Cow genome map


           Conread name:
           Ss1.1-Pig4-TMW8031F14.3
        

               Conread position:
               10-631
               

               Cow position:
               chr1:52487551-52488165 (view UCSC Genome Browser custom track)
               

               Alignm length:
               636
               

               Alignm identity:
               266
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               311, 341
               

               Conread position:
               192-631
               

               Cow position:
               chr1:99570254-99570667 (view UCSC Genome Browser custom track)
               

               Alignm length:
               446
               

               Alignm identity:
               303
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               121, 38
               

               Conread position:
               195-631
               

               Cow position:
               chr1:50930732-50931171 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 211
               

               Conread position:
               196-632
               

               Cow position:
               chr1:25281440-25281879 (view UCSC Genome Browser custom track)
               

               Alignm length:
               458
               

               Alignm identity:
               292
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               215, 29
               

               Conread position:
               198-630
               

               Cow position:
               chr1:25383907-25383461 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               288
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               120, 34
               

               Conread position:
               198-632
               

               Cow position:
               chr1:61565017-61564589 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               286
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               319, 24
               

               Conread position:
               200-631
               

               Cow position:
               chr1:76470888-76470457 (view UCSC Genome Browser custom track)
               

               Alignm length:
               451
               

               Alignm identity:
               307
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               51, 24
               

               Conread position:
               202-389
               

               Cow position:
               chr1:69442280-69442476 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               143
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               123, 148
               

               Conread position:
               202-438
               

               Cow position:
               chr1:81481151-81481393 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               162
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               105, 37
               

               Conread position:
               204-413
               

               Cow position:
               chr1:22637191-22637404 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               153
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               12, 40
               

               Conread position:
               204-631
               

               Cow position:
               chr1:92963609-92963196 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 28
               

               Conread position:
               204-645
               

               Cow position:
               chr1:21578041-21577588 (view UCSC Genome Browser custom track)
               

               Alignm length:
               461
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 27
               

               Conread position:
               206-438
               

               Cow position:
               chr1:17056219-17055983 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               166
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               103, 25
               

               Conread position:
               206-611
               

               Cow position:
               chr1:65318808-65318399 (view UCSC Genome Browser custom track)
               

               Alignm length:
               423
               

               Alignm identity:
               286
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               31, 22
               

               Conread position:
               206-645
               

               Cow position:
               chr1:95177154-95176719 (view UCSC Genome Browser custom track)
               

               Alignm length:
               455
               

               Alignm identity:
               308
               

               Alignm E-value:
               7.9874e-44
               

               Alignm gaps (pig, cow):
               28, 101
               

               Conread position:
               207-536
               

               Cow position:
               chr1:4391037-4391390 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               236
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               29, 144
               

               Conread position:
               207-632
               

               Cow position:
               chr1:89381506-89381075 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               273
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               40, 234
               

               Conread position:
               208-326
               

               Cow position:
               chr1:57088080-57087963 (view UCSC Genome Browser custom track)
               

               Alignm length:
               119
               

               Alignm identity:
               94
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               208-403
               

               Cow position:
               chr1:25021848-25022047 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               146
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               22, 107
               

               Conread position:
               208-546
               

               Cow position:
               chr1:42541818-42541478 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               232
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               104, 19
               

               Conread position:
               209-421
               

               Cow position:
               chr1:89835937-89835727 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               148
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               21, 0
               

               Conread position:
               209-630
               

               Cow position:
               chr1:5596984-5597400 (view UCSC Genome Browser custom track)
               

               Alignm length:
               431
               

               Alignm identity:
               288
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               104, 237
               

               Conread position:
               209-632
               

               Cow position:
               chr1:74083962-74084395 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               120, 19
               

               Conread position:
               210-617
               

               Cow position:
               chr1:33206651-33207063 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               97, 21
               

               Conread position:
               210-632
               

               Cow position:
               chr1:87888617-87888199 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               297
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               109, 198
               

               Conread position:
               211-420
               

               Cow position:
               chr1:34001270-34001058 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               159
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               14, 142
               

               Conread position:
               211-420
               

               Cow position:
               chr1:98556889-98557110 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               158
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               19, 140
               

               Conread position:
               211-538
               

               Cow position:
               chr1:628194-627853 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               228
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               108, 147
               

               Conread position:
               211-539
               

               Cow position:
               chr1:635458-635795 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               233
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               105, 147
               

               Conread position:
               212-425
               

               Cow position:
               chr1:45099981-45099764 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               156
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               34, 20
               

               Conread position:
               212-455
               

               Cow position:
               chr1:527863-528099 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               165
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               192, 14
               

               Conread position:
               212-490
               

               Cow position:
               chr1:22035832-22035549 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               188
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               97, 20
               

               Conread position:
               212-613
               

               Cow position:
               chr1:86579198-86578764 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               289
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               47, 147
               

               Conread position:
               212-630
               

               Cow position:
               chr1:70379944-70380347 (view UCSC Genome Browser custom track)
               

               Alignm length:
               426
               

               Alignm identity:
               275
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               202, 17
               

               Conread position:
               212-631
               

               Cow position:
               chr1:96365874-96365473 (view UCSC Genome Browser custom track)
               

               Alignm length:
               424
               

               Alignm identity:
               293
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               82, 52
               

               Conread position:
               212-632
               

               Cow position:
               chr1:6304654-6305072 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               293
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               138, 19
               

               Conread position:
               212-632
               

               Cow position:
               chr1:11853458-11853893 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               302
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               19, 62
               

               Conread position:
               213-419
               

               Cow position:
               chr1:15875880-15875672 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               154
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               108, 15
               

               Conread position:
               213-449
               

               Cow position:
               chr1:67529281-67529033 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               170
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               7, 21
               

               Conread position:
               213-581
               

               Cow position:
               chr1:76740448-76740840 (view UCSC Genome Browser custom track)
               

               Alignm length:
               396
               

               Alignm identity:
               257
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               88, 149
               

               Conread position:
               213-582
               

               Cow position:
               chr1:86682341-86682716 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               232
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               35, 138
               

               Conread position:
               213-620
               

               Cow position:
               chr1:73545687-73546098 (view UCSC Genome Browser custom track)
               

               Alignm length:
               426
               

               Alignm identity:
               292
               

               Alignm E-value:
               7.9874e-44
               

               Alignm gaps (pig, cow):
               106, 18
               

               Conread position:
               213-627
               

               Cow position:
               chr1:70422525-70422102 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               285
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               115, 15
               

               Conread position:
               213-631
               

               Cow position:
               chr1:3429289-3429710 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               280
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               23, 143
               

               Conread position:
               213-632
               

               Cow position:
               chr1:10778778-10778370 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               100, 56
               

               Conread position:
               213-632
               

               Cow position:
               chr1:63390542-63390977 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               283
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               111, 18
               

               Conread position:
               213-645
               

               Cow position:
               chr1:90864063-90864516 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               300
               

               Alignm E-value:
               9e-35
               

               Alignm gaps (pig, cow):
               21, 73
               

               Conread position:
               214-404
               

               Cow position:
               chr1:84787482-84787297 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               134
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               214-404
               

               Cow position:
               chr1:94712939-94713138 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               147
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               22, 145
               

               Conread position:
               214-624
               

               Cow position:
               chr1:12222381-12222800 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               103, 145
               

               Conread position:
               214-624
               

               Cow position:
               chr1:66138545-66138121 (view UCSC Genome Browser custom track)
               

               Alignm length:
               430
               

               Alignm identity:
               278
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               88, 147
               

               Conread position:
               214-630
               

               Cow position:
               chr1:43340406-43340824 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               301
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               6, 106
               

               Conread position:
               214-631
               

               Cow position:
               chr1:81515463-81515037 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               298
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               10, 140
               

               Conread position:
               214-632
               

               Cow position:
               chr1:63434573-63435013 (view UCSC Genome Browser custom track)
               

               Alignm length:
               446
               

               Alignm identity:
               298
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               6, 146
               

               Conread position:
               214-632
               

               Cow position:
               chr1:78092268-78091833 (view UCSC Genome Browser custom track)
               

               Alignm length:
               445
               

               Alignm identity:
               299
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               9, 152
               

               Conread position:
               214-633
               

               Cow position:
               chr1:46839809-46839390 (view UCSC Genome Browser custom track)
               

               Alignm length:
               433
               

               Alignm identity:
               279
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               194, 13
               

               Conread position:
               215-325
               

               Cow position:
               chr1:24876740-24876628 (view UCSC Genome Browser custom track)
               

               Alignm length:
               113
               

               Alignm identity:
               90
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               24, 0
               

               Conread position:
               215-404
               

               Cow position:
               chr1:81471573-81471382 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               134
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               94, 129
               

               Conread position:
               215-418
               

               Cow position:
               chr1:40303772-40303562 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               150
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               12, 131
               

               Conread position:
               215-420
               

               Cow position:
               chr1:49297873-49297660 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               161
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               106, 141
               

               Conread position:
               215-428
               

               Cow position:
               chr1:63994333-63994551 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               174
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               106, 141
               

               Conread position:
               215-428
               

               Cow position:
               chr1:72422183-72422409 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               163
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               21, 145
               

               Conread position:
               215-438
               

               Cow position:
               chr1:97144247-97144475 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               159
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               22, 129
               

               Conread position:
               215-451
               

               Cow position:
               chr1:50432261-50432502 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               181
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               102, 16
               

               Conread position:
               215-452
               

               Cow position:
               chr1:17875490-17875734 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               164
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               19, 128
               

               Conread position:
               215-477
               

               Cow position:
               chr1:67919353-67919085 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               190
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               22, 101
               

               Conread position:
               215-539
               

               Cow position:
               chr1:56226004-56225683 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               213
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               77, 129
               

               Conread position:
               215-561
               

               Cow position:
               chr1:5010611-5010972 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               249
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               102, 145
               

               Conread position:
               215-620
               

               Cow position:
               chr1:724960-724543 (view UCSC Genome Browser custom track)
               

               Alignm length:
               423
               

               Alignm identity:
               284
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               84, 22
               

               Conread position:
               215-624
               

               Cow position:
               chr1:4691810-4691397 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               282
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               110, 140
               

               Conread position:
               215-624
               

               Cow position:
               chr1:97820903-97820490 (view UCSC Genome Browser custom track)
               

               Alignm length:
               425
               

               Alignm identity:
               275
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               47, 16
               

               Conread position:
               215-630
               

               Cow position:
               chr1:36998406-36997991 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 57
               

               Conread position:
               215-631
               

               Cow position:
               chr1:4414008-4414410 (view UCSC Genome Browser custom track)
               

               Alignm length:
               422
               

               Alignm identity:
               281
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               159, 17
               

               Conread position:
               215-631
               

               Cow position:
               chr1:96304750-96305171 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               292
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               16, 37
               

               Conread position:
               215-632
               

               Cow position:
               chr1:7971624-7971227 (view UCSC Genome Browser custom track)
               

               Alignm length:
               419
               

               Alignm identity:
               272
               

               Alignm E-value:
               9e-35
               

               Alignm gaps (pig, cow):
               73, 16
               

               Conread position:
               215-632
               

               Cow position:
               chr1:19481880-19482276 (view UCSC Genome Browser custom track)
               

               Alignm length:
               423
               

               Alignm identity:
               284
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               183, 13
               

               Conread position:
               215-632
               

               Cow position:
               chr1:36880510-36880075 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               285
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               24, 147
               

               Conread position:
               215-632
               

               Cow position:
               chr1:51628279-51628705 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               296
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               21, 208
               

               Conread position:
               215-632
               

               Cow position:
               chr1:52435499-52435067 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               296
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               24, 140
               

               Conread position:
               215-632
               

               Cow position:
               chr1:61885133-61884712 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               283
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               97, 17
               

               Conread position:
               215-632
               

               Cow position:
               chr1:72068611-72069030 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 35
               

               Conread position:
               215-632
               

               Cow position:
               chr1:94226321-94226751 (view UCSC Genome Browser custom track)
               

               Alignm length:
               442
               

               Alignm identity:
               297
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               16, 145
               

               Conread position:
               215-633
               

               Cow position:
               chr1:68276645-68276202 (view UCSC Genome Browser custom track)
               

               Alignm length:
               449
               

               Alignm identity:
               291
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               16, 155
               

               Conread position:
               215-645
               

               Cow position:
               chr1:52329295-52329745 (view UCSC Genome Browser custom track)
               

               Alignm length:
               458
               

               Alignm identity:
               297
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               16, 111
               

               Conread position:
               216-326
               

               Cow position:
               chr1:34767517-34767404 (view UCSC Genome Browser custom track)
               

               Alignm length:
               114
               

               Alignm identity:
               94
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               216-390
               

               Cow position:
               chr1:43379142-43379321 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               134
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               98, 15
               

               Conread position:
               216-405
               

               Cow position:
               chr1:1380224-1380023 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               147
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               15, 145
               

               Conread position:
               216-405
               

               Cow position:
               chr1:20537425-20537231 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               140
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               15, 138
               

               Conread position:
               216-420
               

               Cow position:
               chr1:1496306-1496521 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               158
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               85, 145
               

               Conread position:
               216-420
               

               Cow position:
               chr1:4444616-4444833 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               152
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               23, 146
               

               Conread position:
               216-420
               

               Cow position:
               chr1:91912554-91912349 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               147
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               123, 97
               

               Conread position:
               216-420
               

               Cow position:
               chr1:100823262-100823047 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               160
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               15, 135
               

               Conread position:
               216-421
               

               Cow position:
               chr1:47969460-47969259 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               146
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               123, 16
               

               Conread position:
               216-422
               

               Cow position:
               chr1:89437505-89437709 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               151
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               23, 130
               

               Conread position:
               216-423
               

               Cow position:
               chr1:67674387-67674596 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               146
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               97, 124
               

               Conread position:
               216-425
               

               Cow position:
               chr1:52450984-52450775 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               151
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               20, 36
               

               Conread position:
               216-437
               

               Cow position:
               chr1:95153096-95152861 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               20, 135
               

               Conread position:
               216-438
               

               Cow position:
               chr1:95835572-95835809 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               171
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               22, 136
               

               Conread position:
               216-450
               

               Cow position:
               chr1:49334168-49334415 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               180
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               17, 50
               

               Conread position:
               216-488
               

               Cow position:
               chr1:101507569-101507301 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               182
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               180, 16
               

               Conread position:
               216-510
               

               Cow position:
               chr1:29474130-29474429 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               206
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               22, 59
               

               Conread position:
               216-527
               

               Cow position:
               chr1:38419252-38418934 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               228
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               15, 55
               

               Conread position:
               216-539
               

               Cow position:
               chr1:5876242-5876570 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               218
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               112, 145
               

               Conread position:
               216-539
               

               Cow position:
               chr1:42482421-42482093 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               223
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               46, 96
               

               Conread position:
               216-539
               

               Cow position:
               chr1:91651126-91651470 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               232
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               31, 146
               

               Conread position:
               216-585
               

               Cow position:
               chr1:96081696-96081328 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               259
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               79, 26
               

               Conread position:
               216-597
               

               Cow position:
               chr1:16060787-16061187 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               271
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               98, 128
               

               Conread position:
               216-610
               

               Cow position:
               chr1:97232191-97231782 (view UCSC Genome Browser custom track)
               

               Alignm length:
               422
               

               Alignm identity:
               281
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               88, 20
               

               Conread position:
               216-620
               

               Cow position:
               chr1:13810876-13810457 (view UCSC Genome Browser custom track)
               

               Alignm length:
               431
               

               Alignm identity:
               282
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               15, 150
               

               Conread position:
               216-622
               

               Cow position:
               chr1:86110525-86110914 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               280
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               104, 16
               

               Conread position:
               216-624
               

               Cow position:
               chr1:5423512-5423930 (view UCSC Genome Browser custom track)
               

               Alignm length:
               423
               

               Alignm identity:
               276
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               105, 193
               

               Conread position:
               216-624
               

               Cow position:
               chr1:22836619-22836207 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               278
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               101, 12
               

               Conread position:
               216-625
               

               Cow position:
               chr1:31934722-31934317 (view UCSC Genome Browser custom track)
               

               Alignm length:
               418
               

               Alignm identity:
               277
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               97, 12
               

               Conread position:
               216-628
               

               Cow position:
               chr1:84905835-84906267 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               286
               

               Alignm E-value:
               9e-35
               

               Alignm gaps (pig, cow):
               15, 149
               

               Conread position:
               216-629
               

               Cow position:
               chr1:64189709-64189302 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               273
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               11, 83
               

               Conread position:
               216-629
               

               Cow position:
               chr1:95386456-95386871 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               273
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               81, 128
               

               Conread position:
               216-630
               

               Cow position:
               chr1:22628435-22628839 (view UCSC Genome Browser custom track)
               

               Alignm length:
               422
               

               Alignm identity:
               292
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 12
               

               Conread position:
               216-631
               

               Cow position:
               chr1:42139061-42138664 (view UCSC Genome Browser custom track)
               

               Alignm length:
               423
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 87
               

               Conread position:
               216-631
               

               Cow position:
               chr1:43839735-43839325 (view UCSC Genome Browser custom track)
               

               Alignm length:
               426
               

               Alignm identity:
               268
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               17, 97
               

               Conread position:
               216-631
               

               Cow position:
               chr1:78857106-78857525 (view UCSC Genome Browser custom track)
               

               Alignm length:
               430
               

               Alignm identity:
               286
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               110, 16
               

               Conread position:
               216-632
               

               Cow position:
               chr1:19144713-19145122 (view UCSC Genome Browser custom track)
               

               Alignm length:
               422
               

               Alignm identity:
               265
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               28, 123
               

               Conread position:
               216-632
               

               Cow position:
               chr1:23968844-23969240 (view UCSC Genome Browser custom track)
               

               Alignm length:
               423
               

               Alignm identity:
               287
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               31, 12
               

               Conread position:
               216-632
               

               Cow position:
               chr1:26201454-26201017 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               296
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               98, 14
               

               Conread position:
               216-632
               

               Cow position:
               chr1:29935173-29935585 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               281
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               100, 12
               

               Conread position:
               216-632
               

               Cow position:
               chr1:40600246-40599845 (view UCSC Genome Browser custom track)
               

               Alignm length:
               423
               

               Alignm identity:
               280
               

               Alignm E-value:
               9e-35
               

               Alignm gaps (pig, cow):
               205, 55
               

               Conread position:
               216-632
               

               Cow position:
               chr1:53495677-53495260 (view UCSC Genome Browser custom track)
               

               Alignm length:
               430
               

               Alignm identity:
               273
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               105, 39
               

               Conread position:
               216-632
               

               Cow position:
               chr1:61005336-61005769 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               289
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               34, 172
               

               Conread position:
               216-632
               

               Cow position:
               chr1:63595827-63596263 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               288
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               17, 148
               

               Conread position:
               216-632
               

               Cow position:
               chr1:64803876-64804311 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               103, 145
               

               Conread position:
               216-632
               

               Cow position:
               chr1:70538827-70538400 (view UCSC Genome Browser custom track)
               

               Alignm length:
               430
               

               Alignm identity:
               292
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               104, 240
               

               Conread position:
               216-632
               

               Cow position:
               chr1:72011600-72012007 (view UCSC Genome Browser custom track)
               

               Alignm length:
               423
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 91
               

               Conread position:
               216-632
               

               Cow position:
               chr1:77620772-77620347 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               291
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               23, 107
               

               Conread position:
               216-633
               

               Cow position:
               chr1:85867825-85867389 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               302
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               14, 212
               

               Conread position:
               216-637
               

               Cow position:
               chr1:101634920-101634493 (view UCSC Genome Browser custom track)
               

               Alignm length:
               435
               

               Alignm identity:
               282
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               206, 97
               

               Conread position:
               216-645
               

               Cow position:
               chr1:68217141-68217575 (view UCSC Genome Browser custom track)
               

               Alignm length:
               446
               

               Alignm identity:
               279
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               15, 51
               

               Conread position:
               216-645
               

               Cow position:
               chr1:81290727-81290302 (view UCSC Genome Browser custom track)
               

               Alignm length:
               442
               

               Alignm identity:
               291
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               14, 86
               

               Conread position:
               217-314
               

               Cow position:
               chr1:90917039-90916942 (view UCSC Genome Browser custom track)
               

               Alignm length:
               98
               

               Alignm identity:
               82
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               217-326
               

               Cow position:
               chr1:36306898-36306789 (view UCSC Genome Browser custom track)
               

               Alignm length:
               110
               

               Alignm identity:
               88
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               217-389
               

               Cow position:
               chr1:3685811-3685636 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               125
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               217-390
               

               Cow position:
               chr1:90840831-90840662 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               123
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               111, 0
               

               Conread position:
               217-392
               

               Cow position:
               chr1:25956116-25955934 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               131
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               82, 131
               

               Conread position:
               217-410
               

               Cow position:
               chr1:41137924-41138122 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               140
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               9, 196
               

               Conread position:
               217-410
               

               Cow position:
               chr1:60403988-60403788 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               144
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               118, 13
               

               Conread position:
               217-412
               

               Cow position:
               chr1:97536499-97536310 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               141
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               20, 88
               

               Conread position:
               217-418
               

               Cow position:
               chr1:6394777-6394572 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               145
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               95, 128
               

               Conread position:
               217-418
               

               Cow position:
               chr1:77739944-77739733 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               149
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               104, 132
               

               Conread position:
               217-438
               

               Cow position:
               chr1:242770-242546 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               154
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               90, 14
               

               Conread position:
               217-459
               

               Cow position:
               chr1:73904249-73903996 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               176
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               23, 145
               

               Conread position:
               217-557
               

               Cow position:
               chr1:66898273-66898626 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               241
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               13, 137
               

               Conread position:
               217-561
               

               Cow position:
               chr1:35600073-35600429 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               243
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               100, 14
               

               Conread position:
               217-584
               

               Cow position:
               chr1:88913540-88913162 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               250
               

               Alignm E-value:
               9e-35
               

               Alignm gaps (pig, cow):
               99, 166
               

               Conread position:
               217-603
               

               Cow position:
               chr1:90621286-90621689 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               261
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               82, 69
               

               Conread position:
               217-629
               

               Cow position:
               chr1:22827365-22826969 (view UCSC Genome Browser custom track)
               

               Alignm length:
               418
               

               Alignm identity:
               269
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               169, 35
               

               Conread position:
               217-631
               

               Cow position:
               chr1:1878243-1877825 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               292
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               110, 142
               

               Conread position:
               217-632
               

               Cow position:
               chr1:41182055-41181641 (view UCSC Genome Browser custom track)
               

               Alignm length:
               425
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               129, 15
               

               Conread position:
               217-632
               

               Cow position:
               chr1:41289560-41289966 (view UCSC Genome Browser custom track)
               

               Alignm length:
               430
               

               Alignm identity:
               289
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               30, 12
               

               Conread position:
               217-632
               

               Cow position:
               chr1:42256284-42256713 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               299
               

               Alignm E-value:
               7.9874e-44
               

               Alignm gaps (pig, cow):
               20, 50
               

               Conread position:
               217-632
               

               Cow position:
               chr1:82936386-82936785 (view UCSC Genome Browser custom track)
               

               Alignm length:
               422
               

               Alignm identity:
               288
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               175, 15
               

               Conread position:
               217-632
               

               Cow position:
               chr1:100449973-100450388 (view UCSC Genome Browser custom track)
               

               Alignm length:
               430
               

               Alignm identity:
               295
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               172, 15
               

               Conread position:
               217-633
               

               Cow position:
               chr1:73960908-73960497 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               280
               

               Alignm E-value:
               9e-35
               

               Alignm gaps (pig, cow):
               19, 48
               

               Conread position:
               217-645
               

               Cow position:
               chr1:8287411-8287830 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               301
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               103, 15
               

               Conread position:
               218-324
               

               Cow position:
               chr1:4303219-4303326 (view UCSC Genome Browser custom track)
               

               Alignm length:
               108
               

               Alignm identity:
               87
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               218-326
               

               Cow position:
               chr1:1915810-1915915 (view UCSC Genome Browser custom track)
               

               Alignm length:
               109
               

               Alignm identity:
               89
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               218-404
               

               Cow position:
               chr1:83677105-83677297 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               151
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               17, 138
               

               Conread position:
               218-406
               

               Cow position:
               chr1:9637252-9637054 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               141
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               13, 133
               

               Conread position:
               218-422
               

               Cow position:
               chr1:32014414-32014203 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               156
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               19, 128
               

               Conread position:
               218-455
               

               Cow position:
               chr1:81391141-81390900 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               177
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               134, 157
               

               Conread position:
               218-495
               

               Cow position:
               chr1:102768396-102768109 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               201
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               13, 47
               

               Conread position:
               218-530
               

               Cow position:
               chr1:98583965-98583662 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               202
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               89, 11
               

               Conread position:
               218-531
               

               Cow position:
               chr1:71350505-71350825 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               226
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               101, 133
               

               Conread position:
               218-539
               

               Cow position:
               chr1:47790447-47790772 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               227
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               21, 138
               

               Conread position:
               218-540
               

               Cow position:
               chr1:71665714-71666042 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               225
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               19, 238
               

               Conread position:
               218-576
               

               Cow position:
               chr1:91023249-91023615 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               233
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               98, 48
               

               Conread position:
               218-608
               

               Cow position:
               chr1:20667531-20667921 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 49
               

               Conread position:
               218-624
               

               Cow position:
               chr1:23488284-23488708 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               282
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               97, 142
               

               Conread position:
               218-627
               

               Cow position:
               chr1:70094557-70094139 (view UCSC Genome Browser custom track)
               

               Alignm length:
               425
               

               Alignm identity:
               278
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               97, 139
               

               Conread position:
               218-629
               

               Cow position:
               chr1:26178590-26179015 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               280
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               107, 14
               

               Conread position:
               218-629
               

               Cow position:
               chr1:46693427-46693857 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               288
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               13, 148
               

               Conread position:
               218-631
               

               Cow position:
               chr1:46030145-46030555 (view UCSC Genome Browser custom track)
               

               Alignm length:
               423
               

               Alignm identity:
               279
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               79, 73
               

               Conread position:
               218-631
               

               Cow position:
               chr1:51446104-51445677 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 54
               

               Conread position:
               218-632
               

               Cow position:
               chr1:64678896-64678494 (view UCSC Genome Browser custom track)
               

               Alignm length:
               423
               

               Alignm identity:
               281
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               176, 10
               

               Conread position:
               218-632
               

               Cow position:
               chr1:69539901-69539495 (view UCSC Genome Browser custom track)
               

               Alignm length:
               418
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               97, 10
               

               Conread position:
               218-632
               

               Cow position:
               chr1:73584183-73584605 (view UCSC Genome Browser custom track)
               

               Alignm length:
               435
               

               Alignm identity:
               284
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               13, 105
               

               Conread position:
               218-632
               

               Cow position:
               chr1:83083217-83082798 (view UCSC Genome Browser custom track)
               

               Alignm length:
               431
               

               Alignm identity:
               279
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               13, 70
               

               Conread position:
               218-632
               

               Cow position:
               chr1:86279640-86279211 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               286
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               11, 150
               

               Conread position:
               218-632
               

               Cow position:
               chr1:89076406-89076839 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               302
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               68, 13
               

               Conread position:
               218-632
               

               Cow position:
               chr1:94875445-94875882 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               284
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               20, 143
               

               Conread position:
               218-632
               

               Cow position:
               chr1:102349537-102349961 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               286
               

               Alignm E-value:
               7.00649e-43
               

               Alignm gaps (pig, cow):
               18, 69
               

               Conread position:
               218-645
               

               Cow position:
               chr1:100552186-100551754 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               293
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               20, 97
               

               Conread position:
               219-317
               

               Cow position:
               chr1:89831629-89831531 (view UCSC Genome Browser custom track)
               

               Alignm length:
               99
               

               Alignm identity:
               82
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               219-382
               

               Cow position:
               chr1:69250650-69250483 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               125
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               86, 75
               

               Conread position:
               219-397
               

               Cow position:
               chr1:90879523-90879702 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               128
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               107, 28
               

               Conread position:
               219-406
               

               Cow position:
               chr1:52139412-52139603 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               141
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               107, 12
               

               Conread position:
               219-410
               

               Cow position:
               chr1:22828357-22828548 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               144
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               102, 12
               

               Conread position:
               219-420
               

               Cow position:
               chr1:81364480-81364269 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               152
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               101, 13
               

               Conread position:
               219-428
               

               Cow position:
               chr1:86687945-86688157 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               153
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               102, 12
               

               Conread position:
               219-430
               

               Cow position:
               chr1:4294565-4294345 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               160
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               12, 54
               

               Conread position:
               219-451
               

               Cow position:
               chr1:74751410-74751651 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               164
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               96, 141
               

               Conread position:
               219-487
               

               Cow position:
               chr1:50765832-50765558 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               190
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               100, 140
               

               Conread position:
               219-560
               

               Cow position:
               chr1:78079942-78079596 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               242
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               19, 248
               

               Conread position:
               219-582
               

               Cow position:
               chr1:53369416-53369054 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               257
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               15, 45
               

               Conread position:
               219-582
               

               Cow position:
               chr1:76612915-76613285 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               253
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               111, 13
               

               Conread position:
               219-593
               

               Cow position:
               chr1:42175945-42175560 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               255
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               88, 13
               

               Conread position:
               219-624
               

               Cow position:
               chr1:21955154-21955569 (view UCSC Genome Browser custom track)
               

               Alignm length:
               421
               

               Alignm identity:
               292
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               107, 139
               

               Conread position:
               219-628
               

               Cow position:
               chr1:69678108-69678525 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               282
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               48, 9
               

               Conread position:
               219-630
               

               Cow position:
               chr1:44507185-44506766 (view UCSC Genome Browser custom track)
               

               Alignm length:
               421
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               106, 13
               

               Conread position:
               219-630
               

               Cow position:
               chr1:55230191-55229783 (view UCSC Genome Browser custom track)
               

               Alignm length:
               419
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               96, 136
               

               Conread position:
               219-631
               

               Cow position:
               chr1:54258787-54258365 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               108, 140
               

               Conread position:
               219-631
               

               Cow position:
               chr1:56225686-56225273 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               279
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               11, 41
               

               Conread position:
               219-632
               

               Cow position:
               chr1:196791-197211 (view UCSC Genome Browser custom track)
               

               Alignm length:
               430
               

               Alignm identity:
               291
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               87, 9
               

               Conread position:
               219-632
               

               Cow position:
               chr1:33720323-33719910 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 9
               

               Conread position:
               219-632
               

               Cow position:
               chr1:34160044-34159628 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               299
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               150, 12
               

               Conread position:
               219-632
               

               Cow position:
               chr1:45019589-45020007 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               286
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               88, 11
               

               Conread position:
               219-632
               

               Cow position:
               chr1:53370303-53369863 (view UCSC Genome Browser custom track)
               

               Alignm length:
               446
               

               Alignm identity:
               301
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               12, 48
               

               Conread position:
               219-632
               

               Cow position:
               chr1:84811724-84812140 (view UCSC Genome Browser custom track)
               

               Alignm length:
               426
               

               Alignm identity:
               275
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               101, 13
               

               Conread position:
               219-632
               

               Cow position:
               chr1:89509713-89510136 (view UCSC Genome Browser custom track)
               

               Alignm length:
               431
               

               Alignm identity:
               280
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               163, 26
               

               Conread position:
               219-632
               

               Cow position:
               chr1:96964538-96964117 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 141
               

               Conread position:
               219-633
               

               Cow position:
               chr1:81568811-81569239 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               290
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               101, 135
               

               Conread position:
               220-389
               

               Cow position:
               chr1:82538144-82537969 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               124
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               100, 0
               

               Conread position:
               220-395
               

               Cow position:
               chr1:41022634-41022455 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               138
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               16, 95
               

               Conread position:
               220-420
               

               Cow position:
               chr1:31340550-31340762 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               153
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               38, 142
               

               Conread position:
               220-428
               

               Cow position:
               chr1:79719023-79718809 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               159
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               109, 9
               

               Conread position:
               220-565
               

               Cow position:
               chr1:79640072-79640426 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               222
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               101, 229
               

               Conread position:
               220-601
               

               Cow position:
               chr1:95558257-95557865 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               268
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               8, 33
               

               Conread position:
               220-602
               

               Cow position:
               chr1:23186587-23186969 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               270
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               101, 11
               

               Conread position:
               220-612
               

               Cow position:
               chr1:43352439-43352840 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               292
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               108, 8
               

               Conread position:
               220-631
               

               Cow position:
               chr1:13414240-13413824 (view UCSC Genome Browser custom track)
               

               Alignm length:
               430
               

               Alignm identity:
               281
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               17, 44
               

               Conread position:
               220-632
               

               Cow position:
               chr1:1980893-1981313 (view UCSC Genome Browser custom track)
               

               Alignm length:
               431
               

               Alignm identity:
               274
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               7, 18
               

               Conread position:
               220-632
               

               Cow position:
               chr1:32340998-32341411 (view UCSC Genome Browser custom track)
               

               Alignm length:
               424
               

               Alignm identity:
               264
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               92, 79
               

               Conread position:
               220-632
               

               Cow position:
               chr1:54206602-54207022 (view UCSC Genome Browser custom track)
               

               Alignm length:
               424
               

               Alignm identity:
               273
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               101, 125
               

               Conread position:
               220-645
               

               Cow position:
               chr1:53374643-53374219 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               97, 10
               

               Conread position:
               220-645
               

               Cow position:
               chr1:72034710-72035145 (view UCSC Genome Browser custom track)
               

               Alignm length:
               445
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 47
               

               Conread position:
               221-414
               

               Cow position:
               chr1:102754065-102753877 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               139
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               221-418
               

               Cow position:
               chr1:68710499-68710292 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               155
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               98, 9
               

               Conread position:
               221-593
               

               Cow position:
               chr1:7748432-7748053 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               259
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               95, 45
               

               Conread position:
               221-624
               

               Cow position:
               chr1:74929492-74929915 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               288
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               107, 142
               

               Conread position:
               221-628
               

               Cow position:
               chr1:54199180-54199583 (view UCSC Genome Browser custom track)
               

               Alignm length:
               416
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               187, 11
               

               Conread position:
               221-632
               

               Cow position:
               chr1:15547680-15547265 (view UCSC Genome Browser custom track)
               

               Alignm length:
               423
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               101, 22
               

               Conread position:
               221-632
               

               Cow position:
               chr1:41056896-41056481 (view UCSC Genome Browser custom track)
               

               Alignm length:
               425
               

               Alignm identity:
               275
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               17, 31
               

               Conread position:
               221-632
               

               Cow position:
               chr1:68863235-68862832 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               186, 78
               

               Conread position:
               221-643
               

               Cow position:
               chr1:6102684-6103130 (view UCSC Genome Browser custom track)
               

               Alignm length:
               451
               

               Alignm identity:
               291
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               98, 140
               

               Conread position:
               222-397
               

               Cow position:
               chr1:26984228-26984043 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               135
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               15, 125
               

               Conread position:
               222-418
               

               Cow position:
               chr1:71664679-71664883 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               152
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               14, 6
               

               Conread position:
               222-420
               

               Cow position:
               chr1:15628494-15628291 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               141
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               91, 120
               

               Conread position:
               222-452
               

               Cow position:
               chr1:26895593-26895836 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               167
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               10, 128
               

               Conread position:
               223-420
               

               Cow position:
               chr1:58420412-58420212 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               147
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               84, 131
               

               Conread position:
               223-632
               

               Cow position:
               chr1:54478529-54478121 (view UCSC Genome Browser custom track)
               

               Alignm length:
               417
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               179, 9
               

               Conread position:
               223-632
               

               Cow position:
               chr1:68826710-68827109 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               279
               

               Alignm E-value:
               7.9874e-44
               

               Alignm gaps (pig, cow):
               266, 46
               

               Conread position:
               224-412
               

               Cow position:
               chr1:32035500-32035690 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               138
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               6, 40
               

               Conread position:
               224-451
               

               Cow position:
               chr1:57089468-57089703 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               178
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               95, 7
               

               Conread position:
               224-582
               

               Cow position:
               chr1:62519580-62519204 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               254
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               14, 140
               

               Conread position:
               224-585
               

               Cow position:
               chr1:22192981-22192607 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               251
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               76, 7
               

               Conread position:
               224-632
               

               Cow position:
               chr1:37321797-37322208 (view UCSC Genome Browser custom track)
               

               Alignm length:
               416
               

               Alignm identity:
               268
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               45, 74
               

               Conread position:
               224-632
               

               Cow position:
               chr1:101916383-101915963 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               275
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               47, 138
               

               Conread position:
               225-554
               

               Cow position:
               chr1:4701459-4701798 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               230
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               93, 46
               

               Conread position:
               225-632
               

               Cow position:
               chr1:29626699-29627118 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               284
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               100, 22
               

               Conread position:
               226-567
               

               Cow position:
               chr1:39224728-39225063 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               223
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               165, 73
               

               Conread position:
               226-632
               

               Cow position:
               chr1:55705036-55705457 (view UCSC Genome Browser custom track)
               

               Alignm length:
               425
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 49
               

               Conread position:
               227-632
               

               Cow position:
               chr1:22730943-22730558 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               276
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               94, 119
               

               Conread position:
               228-367
               

               Cow position:
               chr1:51626587-51626725 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               105
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               110, 0
               

               Conread position:
               228-403
               

               Cow position:
               chr1:82336881-82336706 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               123
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               9, 94
               

               Conread position:
               228-418
               

               Cow position:
               chr1:84595100-84594899 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               142
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               100, 0
               

               Conread position:
               228-438
               

               Cow position:
               chr1:84120-83921 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               151
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               76, 0
               

               Conread position:
               228-563
               

               Cow position:
               chr1:78838996-78838664 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               221
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               157, 74
               

               Conread position:
               228-597
               

               Cow position:
               chr1:22526084-22525717 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               260
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               15, 116
               

               Conread position:
               228-615
               

               Cow position:
               chr1:42397986-42398383 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 248
               

               Conread position:
               228-618
               

               Cow position:
               chr1:49317291-49317683 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               273
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               9, 118
               

               Conread position:
               228-618
               

               Cow position:
               chr1:71228304-71227887 (view UCSC Genome Browser custom track)
               

               Alignm length:
               421
               

               Alignm identity:
               287
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               76, 122
               

               Conread position:
               228-630
               

               Cow position:
               chr1:71119730-71119310 (view UCSC Genome Browser custom track)
               

               Alignm length:
               426
               

               Alignm identity:
               282
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               78, 120
               

               Conread position:
               228-631
               

               Cow position:
               chr1:10941888-10942294 (view UCSC Genome Browser custom track)
               

               Alignm length:
               416
               

               Alignm identity:
               274
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               8, 126
               

               Conread position:
               228-631
               

               Cow position:
               chr1:10964498-10964092 (view UCSC Genome Browser custom track)
               

               Alignm length:
               416
               

               Alignm identity:
               273
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               8, 126
               

               Conread position:
               228-632
               

               Cow position:
               chr1:18936627-18937037 (view UCSC Genome Browser custom track)
               

               Alignm length:
               422
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 65
               

               Conread position:
               228-632
               

               Cow position:
               chr1:24132854-24133259 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               281
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 114
               

               Conread position:
               228-632
               

               Cow position:
               chr1:48105214-48105637 (view UCSC Genome Browser custom track)
               

               Alignm length:
               425
               

               Alignm identity:
               284
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               9, 237
               

               Conread position:
               228-632
               

               Cow position:
               chr1:52496978-52496578 (view UCSC Genome Browser custom track)
               

               Alignm length:
               418
               

               Alignm identity:
               282
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               8, 37
               

               Conread position:
               228-632
               

               Cow position:
               chr1:79591314-79590897 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               290
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               8, 137
               

               Conread position:
               228-632
               

               Cow position:
               chr1:81228126-81228543 (view UCSC Genome Browser custom track)
               

               Alignm length:
               426
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 32
               

               Conread position:
               228-632
               

               Cow position:
               chr1:83982166-83982579 (view UCSC Genome Browser custom track)
               

               Alignm length:
               425
               

               Alignm identity:
               274
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               16, 190
               

               Conread position:
               228-635
               

               Cow position:
               chr1:98619413-98619000 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               284
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               8, 137
               

               Conread position:
               228-645
               

               Cow position:
               chr1:87072904-87072488 (view UCSC Genome Browser custom track)
               

               Alignm length:
               426
               

               Alignm identity:
               285
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 127
               

               Conread position:
               228-650
               

               Cow position:
               chr1:63139054-63138617 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               290
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               8, 132
               

               Conread position:
               229-377
               

               Cow position:
               chr1:62181931-62182076 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               113
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               86, 0
               

               Conread position:
               229-420
               

               Cow position:
               chr1:6731387-6731189 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               145
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               92, 117
               

               Conread position:
               229-621
               

               Cow position:
               chr1:51394626-51394232 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               281
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 118
               

               Conread position:
               229-629
               

               Cow position:
               chr1:12870802-12871207 (view UCSC Genome Browser custom track)
               

               Alignm length:
               417
               

               Alignm identity:
               277
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               83, 46
               

               Conread position:
               229-632
               

               Cow position:
               chr1:7443190-7442781 (view UCSC Genome Browser custom track)
               

               Alignm length:
               421
               

               Alignm identity:
               291
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               86, 133
               

               Conread position:
               231-631
               

               Cow position:
               chr1:43505730-43505321 (view UCSC Genome Browser custom track)
               

               Alignm length:
               412
               

               Alignm identity:
               270
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               81, 90
               

               Conread position:
               232-399
               

               Cow position:
               chr1:53474353-53474189 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               119
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               80, 0
               

               Conread position:
               232-405
               

               Cow position:
               chr1:90267929-90267746 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               141
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               87, 128
               

               Conread position:
               232-406
               

               Cow position:
               chr1:19599155-19599336 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               139
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               87, 72
               

               Conread position:
               232-412
               

               Cow position:
               chr1:53441910-53442092 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               133
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               122, 178
               

               Conread position:
               232-414
               

               Cow position:
               chr1:63461083-63460893 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               135
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               83, 0
               

               Conread position:
               232-415
               

               Cow position:
               chr1:95704009-95703819 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               140
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               87, 111
               

               Conread position:
               232-420
               

               Cow position:
               chr1:61146322-61146131 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               133
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               95, 178
               

               Conread position:
               232-420
               

               Cow position:
               chr1:71789943-71790139 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               149
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               87, 56
               

               Conread position:
               232-420
               

               Cow position:
               chr1:87149611-87149804 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               139
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               89, 114
               

               Conread position:
               232-420
               

               Cow position:
               chr1:99637046-99637245 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               148
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               74, 119
               

               Conread position:
               232-421
               

               Cow position:
               chr1:56913327-56913521 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               142
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               81, 108
               

               Conread position:
               232-421
               

               Cow position:
               chr1:85622737-85622537 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               147
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               85, 128
               

               Conread position:
               232-451
               

               Cow position:
               chr1:31819308-31819087 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               154
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               87, 50
               

               Conread position:
               232-452
               

               Cow position:
               chr1:85772209-85771982 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               51, 14
               

               Conread position:
               232-539
               

               Cow position:
               chr1:78794031-78794335 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               205
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               75, 176
               

               Conread position:
               232-553
               

               Cow position:
               chr1:20104471-20104144 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               215
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               89, 120
               

               Conread position:
               232-557
               

               Cow position:
               chr1:11172573-11172246 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               220
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               82, 126
               

               Conread position:
               232-561
               

               Cow position:
               chr1:64572719-64572381 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               235
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               79, 224
               

               Conread position:
               232-593
               

               Cow position:
               chr1:7752585-7752219 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               250
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               97, 34
               

               Conread position:
               232-600
               

               Cow position:
               chr1:51417970-51417605 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               258
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               17, 60
               

               Conread position:
               232-608
               

               Cow position:
               chr1:102756231-102756605 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               248
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               80, 12
               

               Conread position:
               232-611
               

               Cow position:
               chr1:70435191-70434817 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               264
               

               Alignm E-value:
               7.9874e-44
               

               Alignm gaps (pig, cow):
               178, 81
               

               Conread position:
               232-613
               

               Cow position:
               chr1:68763479-68763866 (view UCSC Genome Browser custom track)
               

               Alignm length:
               396
               

               Alignm identity:
               272
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               103, 170
               

               Conread position:
               232-614
               

               Cow position:
               chr1:59519116-59518736 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 182
               

               Conread position:
               232-617
               

               Cow position:
               chr1:54156529-54156929 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               282
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               89, 116
               

               Conread position:
               232-620
               

               Cow position:
               chr1:25735073-25734662 (view UCSC Genome Browser custom track)
               

               Alignm length:
               423
               

               Alignm identity:
               293
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               87, 39
               

               Conread position:
               232-621
               

               Cow position:
               chr1:83072645-83072251 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               257
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               83, 17
               

               Conread position:
               232-626
               

               Cow position:
               chr1:90975871-90976280 (view UCSC Genome Browser custom track)
               

               Alignm length:
               417
               

               Alignm identity:
               283
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               67, 208
               

               Conread position:
               232-629
               

               Cow position:
               chr1:61391591-61391992 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               269
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               91, 15
               

               Conread position:
               232-629
               

               Cow position:
               chr1:91065952-91066349 (view UCSC Genome Browser custom track)
               

               Alignm length:
               406
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 110
               

               Conread position:
               232-630
               

               Cow position:
               chr1:6759839-6760219 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               270
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               182, 88
               

               Conread position:
               232-631
               

               Cow position:
               chr1:56477790-56477392 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               175, 108
               

               Conread position:
               232-631
               

               Cow position:
               chr1:64302045-64302436 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               267
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               146, 33
               

               Conread position:
               232-631
               

               Cow position:
               chr1:68817595-68818001 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               281
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 26
               

               Conread position:
               232-631
               

               Cow position:
               chr1:75745065-75744658 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               89, 27
               

               Conread position:
               232-631
               

               Cow position:
               chr1:79164877-79165293 (view UCSC Genome Browser custom track)
               

               Alignm length:
               420
               

               Alignm identity:
               292
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               82, 122
               

               Conread position:
               232-631
               

               Cow position:
               chr1:84283276-84282862 (view UCSC Genome Browser custom track)
               

               Alignm length:
               426
               

               Alignm identity:
               285
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               96, 32
               

               Conread position:
               232-632
               

               Cow position:
               chr1:3324079-3323655 (view UCSC Genome Browser custom track)
               

               Alignm length:
               431
               

               Alignm identity:
               299
               

               Alignm E-value:
               8.40779e-45
               

               Alignm gaps (pig, cow):
               94, 220
               

               Conread position:
               232-632
               

               Cow position:
               chr1:3923599-3923997 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               90, 68
               

               Conread position:
               232-632
               

               Cow position:
               chr1:10655682-10655274 (view UCSC Genome Browser custom track)
               

               Alignm length:
               416
               

               Alignm identity:
               266
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               128, 71
               

               Conread position:
               232-632
               

               Cow position:
               chr1:20000551-20000952 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               267
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               65, 81
               

               Conread position:
               232-632
               

               Cow position:
               chr1:21787529-21787123 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               279
               

               Alignm E-value:
               7.9874e-44
               

               Alignm gaps (pig, cow):
               174, 47
               

               Conread position:
               232-632
               

               Cow position:
               chr1:22729259-22728844 (view UCSC Genome Browser custom track)
               

               Alignm length:
               418
               

               Alignm identity:
               277
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               66, 23
               

               Conread position:
               232-632
               

               Cow position:
               chr1:35162610-35162200 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               285
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 48
               

               Conread position:
               232-632
               

               Cow position:
               chr1:41697259-41696851 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               270
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               33, 221
               

               Conread position:
               232-632
               

               Cow position:
               chr1:46218755-46218380 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               270
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               187, 61
               

               Conread position:
               232-632
               

               Cow position:
               chr1:47658553-47658150 (view UCSC Genome Browser custom track)
               

               Alignm length:
               418
               

               Alignm identity:
               299
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               87, 127
               

               Conread position:
               232-632
               

               Cow position:
               chr1:71747829-71748210 (view UCSC Genome Browser custom track)
               

               Alignm length:
               404
               

               Alignm identity:
               274
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               307, 89
               

               Conread position:
               232-632
               

               Cow position:
               chr1:74955827-74956227 (view UCSC Genome Browser custom track)
               

               Alignm length:
               406
               

               Alignm identity:
               281
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               257, 73
               

               Conread position:
               232-632
               

               Cow position:
               chr1:95101156-95100758 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               278
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               88, 120
               

               Conread position:
               232-632
               

               Cow position:
               chr1:97611468-97611856 (view UCSC Genome Browser custom track)
               

               Alignm length:
               406
               

               Alignm identity:
               271
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               107, 32
               

               Conread position:
               232-632
               

               Cow position:
               chr1:101714321-101713914 (view UCSC Genome Browser custom track)
               

               Alignm length:
               418
               

               Alignm identity:
               271
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               83, 168
               

               Conread position:
               232-632
               

               Cow position:
               chr1:101822299-101822701 (view UCSC Genome Browser custom track)
               

               Alignm length:
               412
               

               Alignm identity:
               265
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               88, 170
               

               Conread position:
               232-632
               

               Cow position:
               chr1:102785151-102784757 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               274
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               37, 68
               

               Conread position:
               232-633
               

               Cow position:
               chr1:34771294-34771708 (view UCSC Genome Browser custom track)
               

               Alignm length:
               422
               

               Alignm identity:
               291
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               82, 31
               

               Conread position:
               232-636
               

               Cow position:
               chr1:1956133-1956535 (view UCSC Genome Browser custom track)
               

               Alignm length:
               417
               

               Alignm identity:
               281
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               20, 33
               

               Conread position:
               232-645
               

               Cow position:
               chr1:6166437-6166036 (view UCSC Genome Browser custom track)
               

               Alignm length:
               420
               

               Alignm identity:
               275
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               207, 84
               

               Conread position:
               232-645
               

               Cow position:
               chr1:7740148-7739753 (view UCSC Genome Browser custom track)
               

               Alignm length:
               421
               

               Alignm identity:
               282
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               35, 111
               

               Conread position:
               232-645
               

               Cow position:
               chr1:92370163-92370577 (view UCSC Genome Browser custom track)
               

               Alignm length:
               430
               

               Alignm identity:
               277
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               96, 71
               

               Conread position:
               232-645
               

               Cow position:
               chr1:102266065-102266483 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               287
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               89, 113
               

               Conread position:
               233-402
               

               Cow position:
               chr1:19384253-19384429 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               128
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               80, 0
               

               Conread position:
               233-405
               

               Cow position:
               chr1:70044548-70044381 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               125
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               233-428
               

               Cow position:
               chr1:51860360-51860562 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               152
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               80, 111
               

               Conread position:
               233-451
               

               Cow position:
               chr1:81858697-81858926 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               167
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               70, 111
               

               Conread position:
               233-540
               

               Cow position:
               chr1:43855493-43855190 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               211
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               80, 108
               

               Conread position:
               233-562
               

               Cow position:
               chr1:47886278-47886622 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               244
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               75, 13
               

               Conread position:
               233-593
               

               Cow position:
               chr1:38754121-38753753 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 117
               

               Conread position:
               233-631
               

               Cow position:
               chr1:61741760-61742169 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               264
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               87, 28
               

               Conread position:
               233-632
               

               Cow position:
               chr1:42555447-42555066 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               279
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               182, 35
               

               Conread position:
               234-517
               

               Cow position:
               chr1:100474442-100474143 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               203
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               65, 118
               

               Conread position:
               234-562
               

               Cow position:
               chr1:6228377-6228718 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               231
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               10, 126
               

               Conread position:
               234-579
               

               Cow position:
               chr1:19970391-19970751 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               241
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               69, 32
               

               Conread position:
               234-632
               

               Cow position:
               chr1:48443988-48444386 (view UCSC Genome Browser custom track)
               

               Alignm length:
               416
               

               Alignm identity:
               289
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               74, 116
               

               Conread position:
               234-632
               

               Cow position:
               chr1:93110429-93110825 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               268
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               150, 78
               

               Conread position:
               234-632
               

               Cow position:
               chr1:100422023-100421640 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               264
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               70, 32
               

               Conread position:
               234-633
               

               Cow position:
               chr1:12464462-12464868 (view UCSC Genome Browser custom track)
               

               Alignm length:
               411
               

               Alignm identity:
               270
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               35, 230
               

               Conread position:
               234-633
               

               Cow position:
               chr1:16855498-16855895 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               260
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               67, 112
               

               Conread position:
               235-438
               

               Cow position:
               chr1:97540841-97540632 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               154
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               82, 129
               

               Conread position:
               235-539
               

               Cow position:
               chr1:22943826-22944136 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               214
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               73, 121
               

               Conread position:
               235-632
               

               Cow position:
               chr1:13547778-13548193 (view UCSC Genome Browser custom track)
               

               Alignm length:
               424
               

               Alignm identity:
               281
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               78, 107
               

               Conread position:
               235-645
               

               Cow position:
               chr1:16766884-16767301 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 123
               

               Conread position:
               236-420
               

               Cow position:
               chr1:67585752-67585571 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               136
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               177, 92
               

               Conread position:
               236-567
               

               Cow position:
               chr1:89449099-89448759 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               219
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               54, 239
               

               Conread position:
               236-623
               

               Cow position:
               chr1:82337579-82337979 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 112
               

               Conread position:
               236-631
               

               Cow position:
               chr1:19466237-19465860 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               265
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               170, 51
               

               Conread position:
               236-631
               

               Cow position:
               chr1:28563360-28563771 (view UCSC Genome Browser custom track)
               

               Alignm length:
               417
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 171
               

               Conread position:
               236-631
               

               Cow position:
               chr1:57575563-57575970 (view UCSC Genome Browser custom track)
               

               Alignm length:
               412
               

               Alignm identity:
               256
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               79, 177
               

               Conread position:
               236-632
               

               Cow position:
               chr1:28177181-28176796 (view UCSC Genome Browser custom track)
               

               Alignm length:
               411
               

               Alignm identity:
               272
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               186, 14
               

               Conread position:
               236-632
               

               Cow position:
               chr1:39426816-39427185 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               279
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               171, 59
               

               Conread position:
               236-632
               

               Cow position:
               chr1:46939676-46940065 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               261
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               309, 74
               

               Conread position:
               236-632
               

               Cow position:
               chr1:69415528-69415921 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               266
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               178, 57
               

               Conread position:
               236-632
               

               Cow position:
               chr1:71045936-71045551 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               268
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               186, 76
               

               Conread position:
               236-632
               

               Cow position:
               chr1:75383164-75382788 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               281
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               186, 71
               

               Conread position:
               236-635
               

               Cow position:
               chr1:43872108-43872541 (view UCSC Genome Browser custom track)
               

               Alignm length:
               435
               

               Alignm identity:
               297
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               63, 157
               

               Conread position:
               236-635
               

               Cow position:
               chr1:45555566-45555157 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               285
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 33
               

               Conread position:
               236-643
               

               Cow position:
               chr1:82880832-82880448 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               279
               

               Alignm E-value:
               9e-35
               

               Alignm gaps (pig, cow):
               169, 66
               

               Conread position:
               236-645
               

               Cow position:
               chr1:2075149-2075544 (view UCSC Genome Browser custom track)
               

               Alignm length:
               420
               

               Alignm identity:
               288
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               84, 121
               

               Conread position:
               237-626
               

               Cow position:
               chr1:22777362-22777748 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               255
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               171, 60
               

               Conread position:
               237-629
               

               Cow position:
               chr1:15334088-15333677 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               280
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               84, 107
               

               Conread position:
               237-630
               

               Cow position:
               chr1:8818-8421 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               274
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               62, 114
               

               Conread position:
               237-630
               

               Cow position:
               chr1:96472615-96472228 (view UCSC Genome Browser custom track)
               

               Alignm length:
               412
               

               Alignm identity:
               278
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               259, 55
               

               Conread position:
               237-632
               

               Cow position:
               chr1:68855366-68854971 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               262
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               90, 271
               

               Conread position:
               237-632
               

               Cow position:
               chr1:94212422-94212030 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               270
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               85, 52
               

               Conread position:
               239-632
               

               Cow position:
               chr1:78810077-78809680 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               299
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 5
               

               Conread position:
               240-632
               

               Cow position:
               chr1:100324561-100324929 (view UCSC Genome Browser custom track)
               

               Alignm length:
               396
               

               Alignm identity:
               266
               

               Alignm E-value:
               9e-35
               

               Alignm gaps (pig, cow):
               174, 100
               

               Conread position:
               241-420
               

               Cow position:
               chr1:45223772-45223592 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               129
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               63, 101
               

               Conread position:
               241-632
               

               Cow position:
               chr1:88910728-88911093 (view UCSC Genome Browser custom track)
               

               Alignm length:
               395
               

               Alignm identity:
               255
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               74, 20
               

               Conread position:
               242-628
               

               Cow position:
               chr1:95764917-95765288 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               260
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               171, 50
               

               Conread position:
               242-631
               

               Cow position:
               chr1:34686360-34685992 (view UCSC Genome Browser custom track)
               

               Alignm length:
               395
               

               Alignm identity:
               272
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               68, 15
               

               Conread position:
               242-631
               

               Cow position:
               chr1:55357094-55357488 (view UCSC Genome Browser custom track)
               

               Alignm length:
               406
               

               Alignm identity:
               277
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               81, 112
               

               Conread position:
               242-632
               

               Cow position:
               chr1:31347739-31348113 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               275
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               79, 171
               

               Conread position:
               243-515
               

               Cow position:
               chr1:95618835-95618555 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               196
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               78, 99
               

               Conread position:
               243-551
               

               Cow position:
               chr1:3607989-3607688 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               204
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               253, 77
               

               Conread position:
               243-631
               

               Cow position:
               chr1:100400010-100400404 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               158, 102
               

               Conread position:
               243-632
               

               Cow position:
               chr1:25793264-25793642 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               261
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               205, 50
               

               Conread position:
               244-645
               

               Cow position:
               chr1:53521109-53520690 (view UCSC Genome Browser custom track)
               

               Alignm length:
               426
               

               Alignm identity:
               299
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 105
               

               Conread position:
               245-418
               

               Cow position:
               chr1:1802362-1802180 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               135
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               76, 106
               

               Conread position:
               245-632
               

               Cow position:
               chr1:99642177-99642573 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               282
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 103
               

               Conread position:
               246-543
               

               Cow position:
               chr1:70416569-70416868 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               204
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               69, 101
               

               Conread position:
               246-549
               

               Cow position:
               chr1:72813808-72813492 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               224
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               75, 33
               

               Conread position:
               246-562
               

               Cow position:
               chr1:79660210-79660533 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               226
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               54, 17
               

               Conread position:
               246-584
               

               Cow position:
               chr1:87095020-87095386 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               251
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               81, 113
               

               Conread position:
               246-624
               

               Cow position:
               chr1:99609558-99609170 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 100
               

               Conread position:
               246-628
               

               Cow position:
               chr1:80764363-80764734 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               255
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               163, 53
               

               Conread position:
               246-631
               

               Cow position:
               chr1:43388863-43389250 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 49
               

               Conread position:
               246-631
               

               Cow position:
               chr1:56229427-56229052 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               266
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               27, 74
               

               Conread position:
               246-631
               

               Cow position:
               chr1:100741473-100741089 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               274
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               47, 103
               

               Conread position:
               246-632
               

               Cow position:
               chr1:6941657-6941262 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 100
               

               Conread position:
               246-632
               

               Cow position:
               chr1:13614552-13614922 (view UCSC Genome Browser custom track)
               

               Alignm length:
               395
               

               Alignm identity:
               265
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               97, 71
               

               Conread position:
               246-632
               

               Cow position:
               chr1:34856434-34856832 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               84, 223
               

               Conread position:
               246-632
               

               Cow position:
               chr1:71078771-71079160 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               270
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               75, 174
               

               Conread position:
               246-632
               

               Cow position:
               chr1:77720069-77720435 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               267
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               246-632
               

               Cow position:
               chr1:86113205-86113616 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               289
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               93, 228
               

               Conread position:
               246-632
               

               Cow position:
               chr1:95499305-95499699 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               254
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               74, 167
               

               Conread position:
               246-632
               

               Cow position:
               chr1:99512072-99512456 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               269
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               39, 17
               

               Conread position:
               246-645
               

               Cow position:
               chr1:11913690-11914094 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               276
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               75, 28
               

               Conread position:
               247-419
               

               Cow position:
               chr1:63905074-63905245 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               131
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               60, 95
               

               Conread position:
               247-632
               

               Cow position:
               chr1:23633737-23634104 (view UCSC Genome Browser custom track)
               

               Alignm length:
               396
               

               Alignm identity:
               276
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               80, 159
               

               Conread position:
               248-632
               

               Cow position:
               chr1:68845317-68845689 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               86, 55
               

               Conread position:
               248-632
               

               Cow position:
               chr1:93528883-93528487 (view UCSC Genome Browser custom track)
               

               Alignm length:
               404
               

               Alignm identity:
               282
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               125, 92
               

               Conread position:
               249-586
               

               Cow position:
               chr1:33409435-33409785 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               225
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               74, 113
               

               Conread position:
               249-631
               

               Cow position:
               chr1:11729359-11728975 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               265
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               72, 44
               

               Conread position:
               250-624
               

               Cow position:
               chr1:1499503-1499896 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               266
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               69, 98
               

               Conread position:
               250-632
               

               Cow position:
               chr1:6959066-6958675 (view UCSC Genome Browser custom track)
               

               Alignm length:
               396
               

               Alignm identity:
               281
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 96
               

               Conread position:
               251-632
               

               Cow position:
               chr1:1053768-1053385 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               275
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               76, 108
               

               Conread position:
               251-632
               

               Cow position:
               chr1:91816582-91816977 (view UCSC Genome Browser custom track)
               

               Alignm length:
               404
               

               Alignm identity:
               273
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               73, 112
               

               Conread position:
               251-632
               

               Cow position:
               chr1:101551638-101551254 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               265
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               96, 39
               

               Conread position:
               252-551
               

               Cow position:
               chr1:43311583-43311898 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               207
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               75, 99
               

               Conread position:
               255-631
               

               Cow position:
               chr1:61735266-61735641 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               249
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               134, 60
               

               Conread position:
               255-632
               

               Cow position:
               chr1:72104036-72103643 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               270
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               71, 109
               

               Conread position:
               255-633
               

               Cow position:
               chr1:43357824-43358219 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               261
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               69, 226
               

               Conread position:
               255-645
               

               Cow position:
               chr1:53398155-53397771 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               257
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               68, 156
               

               Conread position:
               255-645
               

               Cow position:
               chr1:70297464-70297055 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               267
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               31, 109
               

               Conread position:
               259-629
               

               Cow position:
               chr1:13637487-13637871 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               244
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               86, 196
               

               Conread position:
               260-632
               

               Cow position:
               chr1:95057221-95056852 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               257
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               39, 89
               

               Conread position:
               262-579
               

               Cow position:
               chr1:31272275-31272591 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               210
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               146, 35
               

               Conread position:
               262-632
               

               Cow position:
               chr1:49433086-49433468 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               269
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               45, 89
               

               Conread position:
               263-645
               

               Cow position:
               chr1:31348261-31348657 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               268
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               55, 87
               

               Conread position:
               266-625
               

               Cow position:
               chr1:68618764-68619134 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               253
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               38, 86
               

               Conread position:
               266-631
               

               Cow position:
               chr1:76019526-76019884 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               252
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               44, 108
               

               Conread position:
               271-589
               

               Cow position:
               chr1:24534095-24534412 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               218
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               26, 78
               

               Conread position:
               271-632
               

               Cow position:
               chr1:635363-634988 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               253
               

               Alignm E-value:
               9e-35
               

               Alignm gaps (pig, cow):
               50, 92
               

               Conread position:
               271-632
               

               Cow position:
               chr1:48581296-48580928 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               263
               

               Alignm E-value:
               7.00649e-43
               

               Alignm gaps (pig, cow):
               48, 78
               

               Conread position:
               272-631
               

               Cow position:
               chr1:4291319-4290956 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               252
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               142, 12
               

               Conread position:
               276-632
               

               Cow position:
               chr1:52039794-52039433 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               247
               

               Alignm E-value:
               7.00649e-43
               

               Alignm gaps (pig, cow):
               37, 169
               

               Conread position:
               277-628
               

               Cow position:
               chr1:60032439-60032798 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               247
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               39, 69
               

               Conread position:
               279-629
               

               Cow position:
               chr1:45007622-45007266 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               246
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               34, 10
               

               Conread position:
               282-623
               

               Cow position:
               chr1:32001167-32001515 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               241
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               33, 73
               

               Conread position:
               286-632
               

               Cow position:
               chr1:45288725-45289077 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               245
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               41, 170
               

               Conread position:
               288-629
               

               Cow position:
               chr1:36613118-36613475 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               242
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               13, 24
               

               Conread position:
               289-632
               

               Cow position:
               chr1:84238983-84239310 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               233
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               6, 26
               

               Conread position:
               293-655
               

               Cow position:
               chr1:93044154-93043799 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               227
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               294, 42
               

               Conread position:
               294-585
               

               Cow position:
               chr1:93554972-93554687 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               194
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               114, 47
               

               Conread position:
               294-632
               

               Cow position:
               chr1:39068820-39069154 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               231
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               114, 47
               

               Conread position:
               297-584
               

               Cow position:
               chr1:85647647-85647937 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               192
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               28, 52
               

               Conread position:
               298-597
               

               Cow position:
               chr1:101632206-101632507 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               201
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               111, 23
               

               Conread position:
               298-632
               

               Cow position:
               chr1:21461001-21460664 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               237
               

               Alignm E-value:
               9e-35
               

               Alignm gaps (pig, cow):
               88, 12
               

               Conread position:
               298-632
               

               Cow position:
               chr1:52995158-52994820 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               230
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               40, 12
               

               Conread position:
               299-630
               

               Cow position:
               chr1:48730700-48731030 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               228
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               14, 43
               

               Conread position:
               299-631
               

               Cow position:
               chr1:3962555-3962886 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               220
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               35, 43
               

               Conread position:
               299-632
               

               Cow position:
               chr1:37706846-37707172 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               228
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               156, 21
               

               Conread position:
               299-632
               

               Cow position:
               chr1:85162414-85162751 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               222
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               21, 109
               

               Conread position:
               299-632
               

               Cow position:
               chr1:90868310-90868639 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               235
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               105, 42
               

               Conread position:
               299-632
               

               Cow position:
               chr1:98461415-98461087 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               230
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               115, 28
               

               Conread position:
               299-633
               

               Cow position:
               chr1:7142721-7143053 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               211
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               193, 14
               

               Conread position:
               300-632
               

               Cow position:
               chr1:36932285-36931956 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               232
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               101, 116
               

               Conread position:
               300-632
               

               Cow position:
               chr1:98360274-98360612 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               233
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               114, 35
               

               Conread position:
               303-645
               

               Cow position:
               chr1:21836060-21835732 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               229
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               18, 92
               

               Conread position:
               306-630
               

               Cow position:
               chr1:66430415-66430095 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               230
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               28, 14
               

               Conread position:
               308-632
               

               Cow position:
               chr1:10063857-10064182 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               213
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               19, 74
               

               Conread position:
               309-632
               

               Cow position:
               chr1:64250933-64251255 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               222
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               133, 18
               

               Conread position:
               310-562
               

               Cow position:
               chr1:85549958-85550211 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               96, 31
               

               Conread position:
               311-632
               

               Cow position:
               chr1:83582814-83583141 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               211
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               81, 24
               

               Conread position:
               312-593
               

               Cow position:
               chr1:91811894-91811622 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               185
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               268, 15
               

               Conread position:
               314-631
               

               Cow position:
               chr1:89741879-89742214 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               241
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               59, 34
               

               Conread position:
               314-632
               

               Cow position:
               chr1:49796109-49795801 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               211
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               11, 28
               

               Conread position:
               316-630
               

               Cow position:
               chr1:79844579-79844267 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               216
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               67, 19
               

               Conread position:
               316-632
               

               Cow position:
               chr1:26702092-26702411 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               222
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               18, 26
               

               Conread position:
               317-632
               

               Cow position:
               chr1:8349213-8349514 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               220
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               226, 10
               

               Conread position:
               317-632
               

               Cow position:
               chr1:88652750-88652427 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               215
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               66, 140
               

               Conread position:
               318-632
               

               Cow position:
               chr1:52956364-52956056 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               222
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               16, 45
               

               Conread position:
               319-629
               

               Cow position:
               chr1:84255879-84255554 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               207
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               61, 0
               

               Conread position:
               319-631
               

               Cow position:
               chr1:41252298-41252605 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               217
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               90, 136
               

               Conread position:
               319-632
               

               Cow position:
               chr1:98551831-98551510 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               211
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               83, 16
               

               Conread position:
               319-632
               

               Cow position:
               chr1:98594677-98594367 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               220
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               5, 23
               

               Conread position:
               319-645
               

               Cow position:
               chr1:42873838-42874163 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               220
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               73, 140
               

               Conread position:
               320-623
               

               Cow position:
               chr1:9534272-9533980 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               206
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               169, 21
               

               Conread position:
               320-631
               

               Cow position:
               chr1:20099476-20099161 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               216
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               94, 21
               

               Conread position:
               320-632
               

               Cow position:
               chr1:31499736-31499424 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               215
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               14, 22
               

               Conread position:
               320-632
               

               Cow position:
               chr1:95215079-95215389 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               224
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               17, 13
               

               Conread position:
               320-645
               

               Cow position:
               chr1:71253445-71253771 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               208
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               83, 132
               

               Conread position:
               321-624
               

               Cow position:
               chr1:71643551-71643859 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               216
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               40, 30
               

               Conread position:
               321-631
               

               Cow position:
               chr1:16961901-16962216 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               224
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               93, 28
               

               Conread position:
               321-632
               

               Cow position:
               chr1:80336140-80336450 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               226
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               84, 28
               

               Conread position:
               321-632
               

               Cow position:
               chr1:80988455-80988143 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               218
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               73, 12
               

               Conread position:
               322-632
               

               Cow position:
               chr1:75142105-75141803 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               220
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               85, 19
               
323-557UCSC Genome Browser

               Conread position:
               
               

               Cow position:
               chr1:89786016-89785781 (view  custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               175
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               84, 28
               
323-593UCSC Genome Browser

               
               
               
Conread position:

               
               
               
Cow position:chr1:57420629-57420891 (view  custom track)

               
               
               
Alignm length:275

               
               
               
Alignm identity:186

               
               
               
Alignm E-value:9e-24

               
               
               
Alignm gaps (pig, cow):94, 26
323-600UCSC Genome Browser

               
               
               
Conread position:

               
               
               
Cow position:chr1:60281480-60281195 (view  custom track)

               
               
               
Alignm length:289

               
               
               
Alignm identity:188

               
               
               
Alignm E-value:6e-21

               
               
               
Alignm gaps (pig, cow):85, 18

               
               
               Conread position:323-601
               
               
               Cow position:chr1:77880627-77880903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):84, 18

               
               
               Conread position:323-631
               
               
               Cow position:chr1:37309412-37309713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):84, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr1:4027970-4027658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):166, 26

               
               
               Conread position:323-632
               
               
               Cow position:chr1:4032739-4032431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):84, 26

               
               
               Conread position:323-632
               
               
               Cow position:chr1:34300444-34300751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:213
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):91, 26

               
               
               Conread position:323-632
               
               
               Cow position:chr1:40530996-40531313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:230
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):81, 26

               
               
               Conread position:323-632
               
               
               Cow position:chr1:53308287-53308596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:220
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):85, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr1:69264915-69264618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):85, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr1:88618703-88618390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):82, 26

               
               
               Conread position:323-633
               
               
               Cow position:chr1:72285961-72286254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):92, 18

               
               
               Conread position:323-645
               
               
               Cow position:chr1:84240987-84240683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:226
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):38, 21

               
               
               Conread position:324-578
               
               
               Cow position:chr1:23512554-23512804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):84, 17

               
               
               Conread position:324-623
               
               
               Cow position:chr1:7350654-7350344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):65, 11

               
               
               Conread position:324-629
               
               
               Cow position:chr1:94261642-94261347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):85, 17

               
               
               Conread position:324-631
               
               
               Cow position:chr1:100706233-100705930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:199
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):213, 87

               
               
               Conread position:324-632
               
               
               Cow position:chr1:81355596-81355907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:221
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):84, 206

               
               
               Conread position:324-650
               
               
               Cow position:chr1:81868623-81868948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):91, 17

               
               
               Conread position:325-613
               
               
               Cow position:chr1:75933371-75933088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):173, 16

               
               
               Conread position:326-632
               
               
               Cow position:chr1:56635202-56634895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):82, 15

               
               
               Conread position:328-629
               
               
               Cow position:chr1:58825644-58825348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):98, 69

               
               
               Conread position:328-632
               
               
               Cow position:chr1:62291598-62291889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):66, 128

               
               
               Conread position:328-632
               
               
               Cow position:chr1:81563848-81563530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):49, 135

               
               
               Conread position:328-632
               
               
               Cow position:chr1:101867452-101867152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:205
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):77, 21

               
               
               Conread position:329-632
               
               
               Cow position:chr1:90641129-90640821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:224
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):87, 12

               
               
               Conread position:333-632
               
               
               Cow position:chr1:19885478-19885181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:214
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):59, 8

               
               
               Conread position:335-632
               
               
               Cow position:chr1:3166980-3167276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):60, 79

               
               
               Conread position:335-632
               
               
               Cow position:chr1:53425272-53424984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:210
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):61, 6

               
               
               Conread position:336-617
               
               
               Cow position:chr1:43703504-43703226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):72, 126

               
               
               Conread position:339-631
               
               
               Cow position:chr1:70026253-70026545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):65, 131

               
               
               Conread position:344-617
               
               
               Cow position:chr1:57297569-57297293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):70, 63

               
               
               Conread position:346-632
               
               
               Cow position:chr1:89485665-89485382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):68, 115

               
               
               Conread position:351-632
               
               
               Cow position:chr1:1185809-1185536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):63, 56

               
               
               Conread position:351-632
               
               
               Cow position:chr1:39418031-39418322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):57, 248

               
               
               Conread position:351-632
               
               
               Cow position:chr1:52753080-52753369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):79, 71

               
               
               Conread position:351-632
               
               
               Cow position:chr1:85361931-85361652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:203
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):53, 69

               
               
               Conread position:351-632
               
               
               Cow position:chr1:91800520-91800809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:199
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):32, 100

               
               
               Conread position:351-645
               
               
               Cow position:chr1:7186868-7186571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):71, 56

               
               
               Conread position:352-632
               
               
               Cow position:chr1:20002153-20002439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):70, 45

               
               
               Conread position:352-632
               
               
               Cow position:chr1:85597017-85596741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):146, 55

               
               
               Conread position:352-632
               
               
               Cow position:chr1:96478779-96478492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):53, 109

               
               
               Conread position:352-644
               
               
               Cow position:chr1:60707482-60707188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:198
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):53, 104

               
               
               Conread position:356-631
               
               
               Cow position:chr1:4374262-4374541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:213
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):56, 51

               
               
               Conread position:356-631
               
               
               Cow position:chr1:81913080-81913354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):58, 11

               
               
               Conread position:356-632
               
               
               Cow position:chr1:44769034-44769315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):50, 94

               
               
               Conread position:357-632
               
               
               Cow position:chr1:61176252-61175980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):48, 61

               
               
               Conread position:358-632
               
               
               Cow position:chr1:95654639-95654919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):9, 95

               
               
               Conread position:359-623
               
               
               Cow position:chr1:82443383-82443651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):49, 29

               
               
               Conread position:359-633
               
               
               Cow position:chr1:11226174-11226450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:200
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):49, 91

               
               
               Conread position:360-632
               
               
               Cow position:chr1:102647203-102647472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):48, 7

               
               
               Conread position:361-624
               
               
               Cow position:chr1:6788213-6788485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:191
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):47, 106

               
               
               Conread position:361-624
               
               
               Cow position:chr1:89498023-89497770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:183
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):33, 37

               
               
               Conread position:361-632
               
               
               Cow position:chr1:82884322-82884593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):12, 63

               
               
               Conread position:361-635
               
               
               Cow position:chr1:79278377-79278651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):45, 27

               
               
               Conread position:361-645
               
               
               Cow position:chr1:57305889-57305616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):53, 46

               
               
               Conread position:361-645
               
               
               Cow position:chr1:81613459-81613169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):47, 96

               
               
               Conread position:362-624
               
               
               Cow position:chr1:11659716-11659448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):71, 47

               
               
               Conread position:363-645
               
               
               Cow position:chr1:4573593-4573304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:209
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):16, 51

               
               
               Conread position:364-632
               
               
               Cow position:chr1:1916160-1916438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:190
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):38, 73

               
               
               Conread position:366-628
               
               
               Cow position:chr1:1991353-1991624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):29, 89

               
               
               Conread position:366-632
               
               
               Cow position:chr1:98311137-98310858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):7, 92

               
               
               Conread position:368-632
               
               
               Cow position:chr1:55135899-55135630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):53, 44

               
               
               Conread position:368-645
               
               
               Cow position:chr1:57639452-57639737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):31, 91

               
               
               Conread position:369-632
               
               
               Cow position:chr1:24235457-24235724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):34, 87

               
               
               Conread position:369-632
               
               
               Cow position:chr1:55260373-55260634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):45, 28

               
               
               Conread position:369-632
               
               
               Cow position:chr1:57395874-57396130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):45, 38

               
               
               Conread position:370-632
               
               
               Cow position:chr1:26729779-26729524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):38, 82

               
               
               Conread position:372-632
               
               
               Cow position:chr1:57635518-57635263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):44, 23

               
               
               Conread position:373-632
               
               
               Cow position:chr1:73761295-73761555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):22, 91

               
               
               Conread position:378-632
               
               
               Cow position:chr1:31234882-31235135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):31, 35

               
               
               Conread position:379-632
               
               
               Cow position:chr1:43447777-43448026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):25, 70

               
               
               Conread position:379-632
               
               
               Cow position:chr1:98372684-98372425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):67, 30

               
               
               Conread position:382-633
               
               
               Cow position:chr1:45535753-45535497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):50, 13

               
               
               Conread position:383-593
               
               
               Cow position:chr1:20544345-20544131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):24, 20

               
               
               Conread position:384-632
               
               
               Cow position:chr1:57247482-57247234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:176
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):24, 48

               
               
               Conread position:384-632
               
               
               Cow position:chr1:68951674-68951428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):49, 23

               
               
               Conread position:386-631
               
               
               Cow position:chr1:68996227-68995969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):22, 30

               
               
               Conread position:386-632
               
               
               Cow position:chr1:55163961-55163719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):28, 13

               
               
               Conread position:388-645
               
               
               Cow position:chr1:43379981-43380245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):20, 62

               
               
               Conread position:389-632
               
               
               Cow position:chr1:22448539-22448790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:187
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:399-632
               
               
               Cow position:chr1:1802167-1801936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):144, 8

               
               
               Conread position:399-632
               
               
               Cow position:chr1:47009063-47008827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):23, 56

               
               
               Conread position:399-632
               
               
               Cow position:chr1:88971087-88970856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):62, 8

               
               
               Conread position:400-613
               
               
               Cow position:chr1:3243967-3243754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):50, 7

               
               
               Conread position:400-632
               
               
               Cow position:chr1:3340965-3340734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):186, 63

               
               
               Conread position:402-632
               
               
               Cow position:chr1:73561622-73561853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):141, 56

               
               
               Conread position:403-631
               
               
               Cow position:chr1:98557763-98557986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):140, 8

               
               
               Conread position:403-632
               
               
               Cow position:chr1:53540415-53540187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):65, 43

               
               
               Conread position:404-632
               
               
               Cow position:chr1:95050064-95050303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):38, 76

               
               
               Conread position:411-628
               
               
               Cow position:chr1:81471149-81470929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):90, 21

               
               
               Conread position:411-632
               
               
               Cow position:chr1:41954225-41954457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):60, 44

               
               
               Conread position:411-633
               
               
               Cow position:chr1:50679263-50679490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:411-645
               
               
               Cow position:chr1:78783564-78783330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):124, 40

               
               
               Conread position:412-632
               
               
               Cow position:chr1:12595886-12596104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):88, 55

               
               
               Conread position:413-631
               
               
               Cow position:chr1:76222674-76222893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):35, 51

               
               
               Conread position:414-632
               
               
               Cow position:chr1:57263979-57264190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):86, 157

               
               
               Conread position:421-624
               
               
               Cow position:chr1:58419951-58419737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:421-632
               
               
               Cow position:chr1:41004354-41004571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):73, 32

               
               
               Conread position:431-631
               
               
               Cow position:chr1:3137930-3137730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):19, 153

               
               
               Conread position:432-632
               
               
               Cow position:chr1:22467932-22467727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):34, 47

               
               
               Conread position:435-621
               
               
               Cow position:chr1:102113110-102113301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):63, 18

               
               
               Conread position:437-631
               
               
               Cow position:chr1:45673701-45673509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):61, 14

               
               
               Conread position:440-632
               
               
               Cow position:chr1:4027183-4026980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):12, 17

               
               
               Conread position:444-631
               
               
               Cow position:chr1:87216445-87216260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:447-632
               
               
               Cow position:chr1:69940982-69941168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):24, 126

               
               
               Conread position:448-628
               
               
               Cow position:chr1:771841-772022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):16, 120

               
               
               Conread position:448-632
               
               
               Cow position:chr1:53410933-53411113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):46, 86

               
               
               Conread position:448-632
               
               
               Cow position:chr1:75967414-75967233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):50, 138

               
               
               Conread position:455-632
               
               
               Cow position:chr1:49839481-49839304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):43, 87

               
               
               Conread position:458-629
               
               
               Cow position:chr1:49753901-49753730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):42, 85

               
               
               Conread position:458-632
               
               
               Cow position:chr1:11873389-11873560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):36, 91

               
               
               Conread position:458-632
               
               
               Cow position:chr1:36874986-36874812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):42, 73

               
               
               Conread position:458-632
               
               
               Cow position:chr1:56711646-56711825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):42, 118

               
               
               Conread position:458-645
               
               
               Cow position:chr1:19998069-19998252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:459-630
               
               
               Cow position:chr1:89437966-89438137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):38, 17

               
               
               Conread position:462-632
               
               
               Cow position:chr1:71325279-71325450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):34, 125

               
               
               Conread position:463-629
               
               
               Cow position:chr1:15311837-15311668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):26, 54

               
               
               Conread position:463-632
               
               
               Cow position:chr1:52506587-52506748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):52, 92

               
               
               Conread position:463-632
               
               
               Cow position:chr1:68282771-68282593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:463-632
               
               
               Cow position:chr1:100512567-100512392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:463-637
               
               
               Cow position:chr1:98708408-98708235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):48, 112

               
               
               Conread position:465-632
               
               
               Cow position:chr1:21093058-21092888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:470-621
               
               
               Cow position:chr1:83593842-83594000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):30, 133

               
               
               Conread position:470-632
               
               
               Cow position:chr1:34000873-34000702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:470-632
               
               
               Cow position:chr1:55146763-55146598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):19, 73

               
               
               Conread position:470-632
               
               
               Cow position:chr1:95327190-95327356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:470-645
               
               
               Cow position:chr1:20288079-20287898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:471-628
               
               
               Cow position:chr1:7450089-7449933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):27, 6

               
               
               Conread position:471-630
               
               
               Cow position:chr1:67821251-67821411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):27, 88

               
               
               Conread position:471-631
               
               
               Cow position:chr1:82861741-82861572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:471-632
               
               
               Cow position:chr1:3751979-3752145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:471-632
               
               
               Cow position:chr1:32013916-32013753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):25, 118

               
               
               Conread position:471-644
               
               
               Cow position:chr1:99136471-99136646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:475-632
               
               
               Cow position:chr1:44136510-44136665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):23, 94

               
               
               Conread position:476-621
               
               
               Cow position:chr1:97806743-97806596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):18, 5

               
               
               Conread position:476-632
               
               
               Cow position:chr1:61725157-61725316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):20, 60

               
               
               Conread position:476-632
               
               
               Cow position:chr1:89395556-89395389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:477-632
               
               
               Cow position:chr1:666319-666157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):21, 109

               
               
               Conread position:477-632
               
               
               Cow position:chr1:99095316-99095160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):23, 123

               
               
               Conread position:478-630
               
               
               Cow position:chr1:85783477-85783324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):36, 66

               
               
               Conread position:478-632
               
               
               Cow position:chr1:79663715-79663869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):112, 18

               
               
               Conread position:481-632
               
               
               Cow position:chr1:31414011-31414162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):16, 93

               
               
               Conread position:493-632
               
               
               Cow position:chr1:51531703-51531570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):43, 73

               
               
               Conread position:493-632
               
               
               Cow position:chr1:98563098-98562957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):90, 22

               
               
               Conread position:493-645
               
               
               Cow position:chr1:5135758-5135908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):44, 52

               
               
               Conread position:495-615
               
               
               Cow position:chr1:89083044-89082921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:102
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:495-620
               
               
               Cow position:chr1:24413378-24413248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:495-624
               
               
               Cow position:chr1:10030472-10030344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):44, 23

               
               
               Conread position:495-627
               
               
               Cow position:chr1:51654345-51654212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:495-629
               
               
               Cow position:chr1:70282870-70282735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:102
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:495-631
               
               
               Cow position:chr1:4293989-4293860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:495-631
               
               
               Cow position:chr1:5873037-5873174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:495-631
               
               
               Cow position:chr1:24655897-24655757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr1:3035059-3035196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr1:3757890-3757749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr1:6077832-6077691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr1:19545165-19545303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr1:20204962-20204823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr1:20384687-20384824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):89, 8

               
               
               Conread position:495-632
               
               
               Cow position:chr1:30504405-30504267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):92, 70

               
               
               Conread position:495-632
               
               
               Cow position:chr1:32631401-32631263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):48, 95

               
               
               Conread position:495-632
               
               
               Cow position:chr1:33717162-33717018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr1:33811863-33811731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr1:44125713-44125843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr1:56748528-56748386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr1:57900806-57900944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):104, 20

               
               
               Conread position:495-632
               
               
               Cow position:chr1:71818524-71818665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr1:81180040-81180183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr1:84786709-84786567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):39, 34

               
               
               Conread position:495-632
               
               
               Cow position:chr1:92010252-92010110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr1:95017585-95017719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:104
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr1:100800290-100800152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):63, 81

               
               
               Conread position:495-633
               
               
               Cow position:chr1:82504908-82504762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:114
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:495-645
               
               
               Cow position:chr1:62964211-62964063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:495-645
               
               
               Cow position:chr1:94404146-94404000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:496-632
               
               
               Cow position:chr1:11770357-11770497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:496-632
               
               
               Cow position:chr1:98577409-98577274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:497-630
               
               
               Cow position:chr1:8532282-8532417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:497-630
               
               
               Cow position:chr1:39702753-39702629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:107
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:497-631
               
               
               Cow position:chr1:67008810-67008940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:497-632
               
               
               Cow position:chr1:43893857-43893722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):129, 45

               
               
               Conread position:499-631
               
               
               Cow position:chr1:78030549-78030685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:501-630
               
               
               Cow position:chr1:55686289-55686422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:501-632
               
               
               Cow position:chr1:40062380-40062245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:501-632
               
               
               Cow position:chr1:96712883-96713017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:102
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:502-653
               
               
               Cow position:chr1:51044541-51044382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:503-631
               
               
               Cow position:chr1:99543123-99543251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:503-632
               
               
               Cow position:chr1:64099338-64099467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):11, 42

               
               
               Conread position:504-632
               
               
               Cow position:chr1:99792740-99792608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:505-632
               
               
               Cow position:chr1:65638133-65638001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:505-632
               
               
               Cow position:chr1:78794812-78794939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:102
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):38, 14

               
               
               Conread position:508-630
               
               
               Cow position:chr1:95071905-95071784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:103
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:509-632
               
               
               Cow position:chr1:29671599-29671727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:509-632
               
               
               Cow position:chr1:52510325-52510446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:98
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:514-632
               
               
               Cow position:chr1:26159513-26159635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:518-632
               
               
               Cow position:chr1:62996405-62996291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:96
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:521-632
               
               
               Cow position:chr1:3872759-3872648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:92
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:525-632
               
               
               Cow position:chr1:94378936-94378830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:87
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:526-628
               
               
               Cow position:chr1:99104981-99105083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:85
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:71-631
               
               
               Cow position:chr10:38014696-38014140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:567
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):312, 270

               
               
               Conread position:196-645
               
               
               Cow position:chr10:36490229-36489772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 117

               
               
               Conread position:197-645
               
               
               Cow position:chr10:33216005-33215550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:299
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):27, 88

               
               
               Conread position:198-373
               
               
               Cow position:chr10:23493478-23493657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):22, 138

               
               
               Conread position:198-632
               
               
               Cow position:chr10:55123018-55122556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:314
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):33, 8

               
               
               Conread position:199-632
               
               
               Cow position:chr10:65071528-65071077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 28

               
               
               Conread position:201-420
               
               
               Cow position:chr10:31718173-31718404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):30, 148

               
               
               Conread position:203-421
               
               
               Cow position:chr10:37174248-37174472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):17, 61

               
               
               Conread position:204-405
               
               
               Cow position:chr10:28843563-28843354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):95, 145

               
               
               Conread position:205-624
               
               
               Cow position:chr10:55051082-55050644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:291
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):111, 26

               
               
               Conread position:205-632
               
               
               Cow position:chr10:28841153-28840719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:290
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):97, 27

               
               
               Conread position:205-633
               
               
               Cow position:chr10:56475657-56475234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:299
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):32, 91

               
               
               Conread position:206-582
               
               
               Cow position:chr10:4109784-4109409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:270
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):17, 105

               
               
               Conread position:206-632
               
               
               Cow position:chr10:27716632-27717075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:288
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):25, 159

               
               
               Conread position:207-632
               
               
               Cow position:chr10:5151549-5151117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:280
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):92, 21

               
               
               Conread position:207-632
               
               
               Cow position:chr10:13368558-13368117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:304
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):29, 156

               
               
               Conread position:208-476
               
               
               Cow position:chr10:6174103-6174360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):15, 46

               
               
               Conread position:208-557
               
               
               Cow position:chr10:16986531-16986171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:255
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):119, 20

               
               
               Conread position:208-567
               
               
               Cow position:chr10:9656323-9656709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:266
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):23, 139

               
               
               Conread position:208-628
               
               
               Cow position:chr10:49046018-49045614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:292
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):30, 69

               
               
               Conread position:208-632
               
               
               Cow position:chr10:31400700-31401132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:288
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):118, 55

               
               
               Conread position:208-632
               
               
               Cow position:chr10:50558734-50559161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:267
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):107, 19

               
               
               Conread position:209-631
               
               
               Cow position:chr10:16644988-16645427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:301
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):27, 63

               
               
               Conread position:209-632
               
               
               Cow position:chr10:28721970-28721556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):195, 17

               
               
               Conread position:209-632
               
               
               Cow position:chr10:34607759-34607324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:295
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):117, 19

               
               
               Conread position:210-393
               
               
               Cow position:chr10:47430021-47429834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:210-403
               
               
               Cow position:chr10:35637947-35638141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):117, 21

               
               
               Conread position:210-631
               
               
               Cow position:chr10:48462149-48462571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 73

               
               
               Conread position:210-632
               
               
               Cow position:chr10:38942634-38942192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:301
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):26, 15

               
               
               Conread position:210-632
               
               
               Cow position:chr10:49846970-49846542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 21

               
               
               Conread position:210-632
               
               
               Cow position:chr10:64285601-64286030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 134

               
               
               Conread position:210-645
               
               
               Cow position:chr10:8093132-8093562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 18

               
               
               Conread position:211-403
               
               
               Cow position:chr10:18154287-18154083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):117, 153

               
               
               Conread position:211-405
               
               
               Cow position:chr10:35486240-35486442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):11, 22

               
               
               Conread position:211-632
               
               
               Cow position:chr10:37415979-37415551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:279
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):25, 79

               
               
               Conread position:212-623
               
               
               Cow position:chr10:10148843-10148425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:287
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):97, 17

               
               
               Conread position:212-630
               
               
               Cow position:chr10:13311939-13311500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 26

               
               
               Conread position:212-632
               
               
               Cow position:chr10:5543052-5543483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:290
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):12, 139

               
               
               Conread position:212-632
               
               
               Cow position:chr10:6720098-6719668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:298
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):21, 50

               
               
               Conread position:212-632
               
               
               Cow position:chr10:24276537-24276980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:305
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):109, 15

               
               
               Conread position:212-632
               
               
               Cow position:chr10:33890899-33891321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:296
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):9, 119

               
               
               Conread position:212-632
               
               
               Cow position:chr10:37235354-37235787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 16

               
               
               Conread position:212-632
               
               
               Cow position:chr10:40107298-40106882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:293
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):87, 137

               
               
               Conread position:212-632
               
               
               Cow position:chr10:69934591-69935011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:305
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):109, 16

               
               
               Conread position:213-314
               
               
               Cow position:chr10:22810840-22810943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:86
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:213-325
               
               
               Cow position:chr10:32336218-32336103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:92
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:213-418
               
               
               Cow position:chr10:29373180-29373391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):105, 15

               
               
               Conread position:213-447
               
               
               Cow position:chr10:3276161-3275923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):94, 19

               
               
               Conread position:213-457
               
               
               Cow position:chr10:41676221-41676470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):94, 133

               
               
               Conread position:213-460
               
               
               Cow position:chr10:10027769-10027512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):24, 149

               
               
               Conread position:213-601
               
               
               Cow position:chr10:8161702-8161301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:273
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):14, 349

               
               
               Conread position:213-632
               
               
               Cow position:chr10:42313097-42312674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 15

               
               
               Conread position:214-412
               
               
               Cow position:chr10:11060339-11060537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):99, 126

               
               
               Conread position:214-420
               
               
               Cow position:chr10:44513070-44513283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):54, 13

               
               
               Conread position:214-443
               
               
               Cow position:chr10:16830192-16830424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):105, 22

               
               
               Conread position:214-621
               
               
               Cow position:chr10:57059082-57059508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 14

               
               
               Conread position:214-632
               
               
               Cow position:chr10:2462289-2462712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:296
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):113, 14

               
               
               Conread position:214-632
               
               
               Cow position:chr10:2973881-2974322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:318
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):56, 17

               
               
               Conread position:214-632
               
               
               Cow position:chr10:3999084-3998671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:282
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):13, 68

               
               
               Conread position:214-632
               
               
               Cow position:chr10:10048875-10048448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:305
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):21, 153

               
               
               Conread position:215-377
               
               
               Cow position:chr10:22960986-22961148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):18, 93

               
               
               Conread position:215-405
               
               
               Cow position:chr10:38205525-38205714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:215-406
               
               
               Cow position:chr10:4626717-4626519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):102, 145

               
               
               Conread position:215-449
               
               
               Cow position:chr10:41116092-41115853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):98, 77

               
               
               Conread position:215-451
               
               
               Cow position:chr10:59455553-59455325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:215-457
               
               
               Cow position:chr10:22980790-22981040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):98, 16

               
               
               Conread position:215-468
               
               
               Cow position:chr10:27136495-27136752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):78, 14

               
               
               Conread position:215-583
               
               
               Cow position:chr10:2613554-2613182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:243
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:215-629
               
               
               Cow position:chr10:22341768-22341334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 101

               
               
               Conread position:215-630
               
               
               Cow position:chr10:6852457-6852040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:273
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):32, 203

               
               
               Conread position:215-632
               
               
               Cow position:chr10:11081164-11080724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:288
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):84, 243

               
               
               Conread position:215-632
               
               
               Cow position:chr10:14947446-14947033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:277
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):16, 139

               
               
               Conread position:215-632
               
               
               Cow position:chr10:37667990-37668394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:280
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):204, 13

               
               
               Conread position:215-632
               
               
               Cow position:chr10:38370263-38370696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 16

               
               
               Conread position:215-632
               
               
               Cow position:chr10:59151687-59152097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:293
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):13, 83

               
               
               Conread position:215-633
               
               
               Cow position:chr10:41408460-41408052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 115

               
               
               Conread position:215-643
               
               
               Cow position:chr10:42637424-42636979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:309
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):16, 46

               
               
               Conread position:215-645
               
               
               Cow position:chr10:56733220-56732799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:299
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):125, 54

               
               
               Conread position:215-648
               
               
               Cow position:chr10:25150080-25149655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 105

               
               
               Conread position:216-318
               
               
               Cow position:chr10:20996983-20997085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:86
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:216-325
               
               
               Cow position:chr10:36945608-36945717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:88
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:216-326
               
               
               Cow position:chr10:54263416-54263306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:91
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:216-396
               
               
               Cow position:chr10:55069397-55069214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):103, 135

               
               
               Conread position:216-406
               
               
               Cow position:chr10:9959411-9959211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):15, 144

               
               
               Conread position:216-417
               
               
               Cow position:chr10:10488572-10488772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):123, 12

               
               
               Conread position:216-438
               
               
               Cow position:chr10:35248948-35249175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):21, 134

               
               
               Conread position:216-530
               
               
               Cow position:chr10:39124326-39123998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):89, 250

               
               
               Conread position:216-530
               
               
               Cow position:chr10:60446920-60446601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):79, 16

               
               
               Conread position:216-545
               
               
               Cow position:chr10:41132455-41132126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:236
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):15, 38

               
               
               Conread position:216-567
               
               
               Cow position:chr10:51803855-51804200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):21, 143

               
               
               Conread position:216-611
               
               
               Cow position:chr10:7291624-7292009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:276
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):103, 48

               
               
               Conread position:216-621
               
               
               Cow position:chr10:7817311-7816885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:270
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):18, 40

               
               
               Conread position:216-624
               
               
               Cow position:chr10:38944451-38944033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:288
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):17, 144

               
               
               Conread position:216-630
               
               
               Cow position:chr10:45371248-45370823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 208

               
               
               Conread position:216-631
               
               
               Cow position:chr10:21447743-21448126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:280
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):190, 16

               
               
               Conread position:216-631
               
               
               Cow position:chr10:43439042-43438637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:291
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):185, 12

               
               
               Conread position:216-631
               
               
               Cow position:chr10:51306527-51306093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:292
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):100, 108

               
               
               Conread position:216-632
               
               
               Cow position:chr10:16739878-16740291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:271
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):13, 59

               
               
               Conread position:216-632
               
               
               Cow position:chr10:31466934-31466510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:286
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):17, 98

               
               
               Conread position:216-632
               
               
               Cow position:chr10:34661141-34661551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:287
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):75, 46

               
               
               Conread position:216-632
               
               
               Cow position:chr10:35731337-35731760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 204

               
               
               Conread position:216-632
               
               
               Cow position:chr10:37818365-37818794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:284
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):72, 126

               
               
               Conread position:216-632
               
               
               Cow position:chr10:39874965-39875379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:275
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):14, 77

               
               
               Conread position:216-632
               
               
               Cow position:chr10:49168841-49169291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:312
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):89, 13

               
               
               Conread position:216-632
               
               
               Cow position:chr10:49455905-49456310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:279
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):50, 108

               
               
               Conread position:216-632
               
               
               Cow position:chr10:50182865-50183281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 23

               
               
               Conread position:216-632
               
               
               Cow position:chr10:59572083-59571664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:275
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):198, 83

               
               
               Conread position:216-632
               
               
               Cow position:chr10:67442930-67443339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:281
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):103, 134

               
               
               Conread position:216-645
               
               
               Cow position:chr10:15868449-15867988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 146

               
               
               Conread position:217-386
               
               
               Cow position:chr10:18849713-18849538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):81, 139

               
               
               Conread position:217-405
               
               
               Cow position:chr10:14188427-14188614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):104, 15

               
               
               Conread position:217-420
               
               
               Cow position:chr10:10575496-10575296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):92, 12

               
               
               Conread position:217-420
               
               
               Cow position:chr10:38195784-38195993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):109, 198

               
               
               Conread position:217-449
               
               
               Cow position:chr10:61509757-61509996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):103, 97

               
               
               Conread position:217-523
               
               
               Cow position:chr10:34674201-34673896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):96, 12

               
               
               Conread position:217-582
               
               
               Cow position:chr10:11463471-11463850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 13

               
               
               Conread position:217-593
               
               
               Cow position:chr10:40738180-40737808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 136

               
               
               Conread position:217-611
               
               
               Cow position:chr10:37765228-37764804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:283
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):20, 144

               
               
               Conread position:217-614
               
               
               Cow position:chr10:44730284-44730697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 143

               
               
               Conread position:217-627
               
               
               Cow position:chr10:43531455-43531026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:295
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):86, 14

               
               
               Conread position:217-632
               
               
               Cow position:chr10:15817609-15818030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 15

               
               
               Conread position:217-632
               
               
               Cow position:chr10:24560797-24561221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 107

               
               
               Conread position:217-632
               
               
               Cow position:chr10:48259051-48259465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:289
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):14, 138

               
               
               Conread position:217-632
               
               
               Cow position:chr10:59009951-59010375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 15

               
               
               Conread position:217-632
               
               
               Cow position:chr10:61588066-61588495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 129

               
               
               Conread position:217-633
               
               
               Cow position:chr10:44771837-44771421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 128

               
               
               Conread position:217-633
               
               
               Cow position:chr10:64182632-64182215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 19

               
               
               Conread position:217-645
               
               
               Cow position:chr10:2849517-2849108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 14

               
               
               Conread position:218-405
               
               
               Cow position:chr10:9797721-9797914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):23, 53

               
               
               Conread position:218-406
               
               
               Cow position:chr10:33772639-33772443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):85, 142

               
               
               Conread position:218-406
               
               
               Cow position:chr10:43441917-43442110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):19, 137

               
               
               Conread position:218-414
               
               
               Cow position:chr10:42115541-42115349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):104, 13

               
               
               Conread position:218-416
               
               
               Cow position:chr10:6719167-6718957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):19, 143

               
               
               Conread position:218-421
               
               
               Cow position:chr10:57877665-57877449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):13, 145

               
               
               Conread position:218-451
               
               
               Cow position:chr10:19191940-19191706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):102, 13

               
               
               Conread position:218-535
               
               
               Cow position:chr10:45294954-45295276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):89, 11

               
               
               Conread position:218-545
               
               
               Cow position:chr10:23026680-23026357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):125, 18

               
               
               Conread position:218-577
               
               
               Cow position:chr10:45965683-45965322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:255
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):91, 12

               
               
               Conread position:218-624
               
               
               Cow position:chr10:37512050-37512474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 46

               
               
               Conread position:218-627
               
               
               Cow position:chr10:7304754-7304342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:289
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):94, 137

               
               
               Conread position:218-627
               
               
               Cow position:chr10:37224988-37225406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:287
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):80, 142

               
               
               Conread position:218-628
               
               
               Cow position:chr10:62353646-62353236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:269
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):8, 15

               
               
               Conread position:218-629
               
               
               Cow position:chr10:24096175-24096610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:293
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):18, 148

               
               
               Conread position:218-631
               
               
               Cow position:chr10:26013-25596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:288
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):44, 19

               
               
               Conread position:218-632
               
               
               Cow position:chr10:5889570-5890004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 75

               
               
               Conread position:218-632
               
               
               Cow position:chr10:24312700-24313123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 122

               
               
               Conread position:218-632
               
               
               Cow position:chr10:39228351-39227923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:284
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):59, 14

               
               
               Conread position:218-632
               
               
               Cow position:chr10:39398331-39398752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:279
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):93, 12

               
               
               Conread position:218-633
               
               
               Cow position:chr10:35792117-35791698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 211

               
               
               Conread position:218-645
               
               
               Cow position:chr10:6490067-6489619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:298
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):87, 246

               
               
               Conread position:218-645
               
               
               Cow position:chr10:35901510-35901090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:274
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):78, 199

               
               
               Conread position:218-650
               
               
               Cow position:chr10:26731479-26731901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:293
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):298, 77

               
               
               Conread position:218-672
               
               
               Cow position:chr10:25342771-25342318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 127

               
               
               Conread position:219-405
               
               
               Cow position:chr10:36855940-36856135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):107, 17

               
               
               Conread position:219-420
               
               
               Cow position:chr10:28223405-28223195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):18, 141

               
               
               Conread position:219-420
               
               
               Cow position:chr10:44758997-44758788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):9, 138

               
               
               Conread position:219-455
               
               
               Cow position:chr10:1698553-1698800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):97, 141

               
               
               Conread position:219-455
               
               
               Cow position:chr10:35090240-35089999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):79, 141

               
               
               Conread position:219-593
               
               
               Cow position:chr10:10120374-10120004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):102, 13

               
               
               Conread position:219-595
               
               
               Cow position:chr10:35653858-35653467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:264
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):18, 109

               
               
               Conread position:219-603
               
               
               Cow position:chr10:12486432-12486062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:267
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):180, 44

               
               
               Conread position:219-632
               
               
               Cow position:chr10:9288216-9287833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:281
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):137, 88

               
               
               Conread position:219-632
               
               
               Cow position:chr10:22527730-22528135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:273
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):14, 90

               
               
               Conread position:219-632
               
               
               Cow position:chr10:24871357-24870931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 13

               
               
               Conread position:219-632
               
               
               Cow position:chr10:28176214-28176627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):186, 70

               
               
               Conread position:219-632
               
               
               Cow position:chr10:48316754-48317190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 142

               
               
               Conread position:219-632
               
               
               Cow position:chr10:63940958-63940541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 13

               
               
               Conread position:219-632
               
               
               Cow position:chr10:66128038-66127624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:296
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):102, 47

               
               
               Conread position:219-645
               
               
               Cow position:chr10:46151057-46150638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:282
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):17, 96

               
               
               Conread position:220-416
               
               
               Cow position:chr10:49142319-49142522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):113, 195

               
               
               Conread position:220-448
               
               
               Cow position:chr10:10153192-10152959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):93, 120

               
               
               Conread position:220-528
               
               
               Cow position:chr10:31004828-31005148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:220-539
               
               
               Cow position:chr10:15248853-15249186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):97, 16

               
               
               Conread position:220-549
               
               
               Cow position:chr10:6384711-6384385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):162, 8

               
               
               Conread position:220-562
               
               
               Cow position:chr10:38241268-38240920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:239
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):6, 138

               
               
               Conread position:220-621
               
               
               Cow position:chr10:17844952-17844536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 125

               
               
               Conread position:220-632
               
               
               Cow position:chr10:8404393-8403975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:271
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):154, 73

               
               
               Conread position:220-632
               
               
               Cow position:chr10:17073180-17073587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 132

               
               
               Conread position:220-632
               
               
               Cow position:chr10:33666031-33665606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:281
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):17, 242

               
               
               Conread position:220-645
               
               
               Cow position:chr10:19895583-19895152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 75

               
               
               Conread position:221-438
               
               
               Cow position:chr10:32080453-32080234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:221-632
               
               
               Cow position:chr10:1976133-1976554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 21

               
               
               Conread position:221-632
               
               
               Cow position:chr10:22616455-22616877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 48

               
               
               Conread position:221-632
               
               
               Cow position:chr10:37529088-37529503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 93

               
               
               Conread position:221-632
               
               
               Cow position:chr10:56835479-56835045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:282
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):105, 139

               
               
               Conread position:221-633
               
               
               Cow position:chr10:46830054-46829640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:295
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):104, 16

               
               
               Conread position:221-637
               
               
               Cow position:chr10:20371944-20372369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 102

               
               
               Conread position:222-567
               
               
               Cow position:chr10:44764307-44764673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:253
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):99, 21

               
               
               Conread position:222-631
               
               
               Cow position:chr10:35904660-35905063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:276
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):165, 21

               
               
               Conread position:222-632
               
               
               Cow position:chr10:54504787-54504368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 10

               
               
               Conread position:222-632
               
               
               Cow position:chr10:55733427-55733833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:273
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):92, 9

               
               
               Conread position:223-655
               
               
               Cow position:chr10:20391250-20391701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:298
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):86, 147

               
               
               Conread position:224-326
               
               
               Cow position:chr10:42574212-42574110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:88
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:224-632
               
               
               Cow position:chr10:14816978-14817399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 104

               
               
               Conread position:224-632
               
               
               Cow position:chr10:63276573-63276157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 41

               
               
               Conread position:224-633
               
               
               Cow position:chr10:37989475-37989074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:271
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):17, 41

               
               
               Conread position:225-632
               
               
               Cow position:chr10:37286991-37287411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:275
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):101, 137

               
               
               Conread position:226-393
               
               
               Cow position:chr10:60697447-60697618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:227-632
               
               
               Cow position:chr10:20095947-20095520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:284
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):73, 246

               
               
               Conread position:228-428
               
               
               Cow position:chr10:52125512-52125715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):8, 79

               
               
               Conread position:228-626
               
               
               Cow position:chr10:37014816-37014408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 48

               
               
               Conread position:228-627
               
               
               Cow position:chr10:53907547-53907947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:281
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):88, 127

               
               
               Conread position:228-628
               
               
               Cow position:chr10:62220020-62219594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:291
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):8, 135

               
               
               Conread position:228-629
               
               
               Cow position:chr10:19403093-19402704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:279
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):8, 98

               
               
               Conread position:228-631
               
               
               Cow position:chr10:57033617-57034023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:274
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):8, 189

               
               
               Conread position:228-632
               
               
               Cow position:chr10:11966665-11967079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:275
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):41, 178

               
               
               Conread position:228-632
               
               
               Cow position:chr10:16598871-16598455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 122

               
               
               Conread position:228-632
               
               
               Cow position:chr10:41737471-41737072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:282
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):8, 36

               
               
               Conread position:228-632
               
               
               Cow position:chr10:54962543-54962953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:288
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):7, 32

               
               
               Conread position:228-632
               
               
               Cow position:chr10:60961125-60960706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:286
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):77, 131

               
               
               Conread position:228-645
               
               
               Cow position:chr10:23912333-23912743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:287
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):72, 36

               
               
               Conread position:229-377
               
               
               Cow position:chr10:30452008-30451863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:229-632
               
               
               Cow position:chr10:30353028-30352610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:278
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):84, 129

               
               
               Conread position:229-632
               
               
               Cow position:chr10:41984727-41985121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:267
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):185, 64

               
               
               Conread position:230-420
               
               
               Cow position:chr10:50050075-50049889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):77, 36

               
               
               Conread position:231-538
               
               
               Cow position:chr10:37068245-37068552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):92, 119

               
               
               Conread position:232-404
               
               
               Cow position:chr10:15602003-15602184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):89, 118

               
               
               Conread position:232-406
               
               
               Cow position:chr10:36399873-36400055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):86, 127

               
               
               Conread position:232-409
               
               
               Cow position:chr10:3957867-3958050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):54, 125

               
               
               Conread position:232-412
               
               
               Cow position:chr10:14732794-14732619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:232-413
               
               
               Cow position:chr10:58807574-58807757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):66, 110

               
               
               Conread position:232-418
               
               
               Cow position:chr10:34700790-34700612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):175, 70

               
               
               Conread position:232-420
               
               
               Cow position:chr10:48814253-48814446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):89, 34

               
               
               Conread position:232-438
               
               
               Cow position:chr10:47159380-47159174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):75, 31

               
               
               Conread position:232-451
               
               
               Cow position:chr10:25822079-25822298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):151, 84

               
               
               Conread position:232-451
               
               
               Cow position:chr10:36400908-36401137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):86, 127

               
               
               Conread position:232-507
               
               
               Cow position:chr10:48178514-48178245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):182, 39

               
               
               Conread position:232-519
               
               
               Cow position:chr10:19099004-19098717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):141, 87

               
               
               Conread position:232-558
               
               
               Cow position:chr10:37884638-37884953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):264, 70

               
               
               Conread position:232-571
               
               
               Cow position:chr10:60236925-60237266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:231
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):88, 218

               
               
               Conread position:232-622
               
               
               Cow position:chr10:30787450-30787832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 124

               
               
               Conread position:232-629
               
               
               Cow position:chr10:2853466-2853877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:264
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):26, 38

               
               
               Conread position:232-629
               
               
               Cow position:chr10:62286740-62286320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 352

               
               
               Conread position:232-630
               
               
               Cow position:chr10:10751812-10752212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 111

               
               
               Conread position:232-631
               
               
               Cow position:chr10:16093385-16092982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:264
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):80, 187

               
               
               Conread position:232-631
               
               
               Cow position:chr10:22390773-22390356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:284
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):12, 185

               
               
               Conread position:232-631
               
               
               Cow position:chr10:31027466-31027877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:271
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):93, 183

               
               
               Conread position:232-631
               
               
               Cow position:chr10:37708851-37709270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:285
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):156, 76

               
               
               Conread position:232-632
               
               
               Cow position:chr10:10124500-10124111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:264
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):176, 61

               
               
               Conread position:232-632
               
               
               Cow position:chr10:19394391-19394813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:291
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):77, 129

               
               
               Conread position:232-632
               
               
               Cow position:chr10:20553354-20552947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 31

               
               
               Conread position:232-632
               
               
               Cow position:chr10:23576715-23576309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 110

               
               
               Conread position:232-632
               
               
               Cow position:chr10:24753311-24752922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 55

               
               
               Conread position:232-632
               
               
               Cow position:chr10:29627788-29628184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:274
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):92, 129

               
               
               Conread position:232-632
               
               
               Cow position:chr10:34654936-34655345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:271
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):81, 230

               
               
               Conread position:232-632
               
               
               Cow position:chr10:35911606-35911979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:268
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):220, 10

               
               
               Conread position:232-632
               
               
               Cow position:chr10:38133306-38133717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:275
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):83, 20

               
               
               Conread position:232-632
               
               
               Cow position:chr10:40163759-40164163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:275
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):89, 106

               
               
               Conread position:232-632
               
               
               Cow position:chr10:41397650-41397246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:276
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):91, 129

               
               
               Conread position:232-632
               
               
               Cow position:chr10:47773895-47773500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:262
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):75, 31

               
               
               Conread position:232-632
               
               
               Cow position:chr10:51289419-51289020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 110

               
               
               Conread position:232-632
               
               
               Cow position:chr10:62114860-62114464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:270
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):87, 31

               
               
               Conread position:232-632
               
               
               Cow position:chr10:64042259-64041848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:286
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):67, 88

               
               
               Conread position:232-632
               
               
               Cow position:chr10:69544186-69544565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:255
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):67, 47

               
               
               Conread position:232-633
               
               
               Cow position:chr10:43487890-43487476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 15

               
               
               Conread position:232-633
               
               
               Cow position:chr10:48741007-48741392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:276
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):173, 67

               
               
               Conread position:232-645
               
               
               Cow position:chr10:23055918-23056329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:282
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):151, 33

               
               
               Conread position:232-645
               
               
               Cow position:chr10:50332769-50332342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:289
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):93, 27

               
               
               Conread position:232-661
               
               
               Cow position:chr10:45378826-45379269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 127

               
               
               Conread position:233-420
               
               
               Cow position:chr10:47559386-47559571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):80, 26

               
               
               Conread position:233-438
               
               
               Cow position:chr10:38430393-38430605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):74, 121

               
               
               Conread position:233-624
               
               
               Cow position:chr10:8277729-8277316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:277
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):82, 126

               
               
               Conread position:233-630
               
               
               Cow position:chr10:6436231-6435827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 107

               
               
               Conread position:233-632
               
               
               Cow position:chr10:19104008-19104410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:287
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):112, 176

               
               
               Conread position:233-632
               
               
               Cow position:chr10:23506315-23506719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:268
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):49, 31

               
               
               Conread position:233-632
               
               
               Cow position:chr10:39939258-39939664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:269
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):45, 182

               
               
               Conread position:233-632
               
               
               Cow position:chr10:57786510-57786103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:271
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):82, 145

               
               
               Conread position:233-633
               
               
               Cow position:chr10:31362045-31362445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:267
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):78, 88

               
               
               Conread position:234-348
               
               
               Cow position:chr10:8068287-8068174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:91
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:234-532
               
               
               Cow position:chr10:7383444-7383743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):77, 235

               
               
               Conread position:234-632
               
               
               Cow position:chr10:30224844-30224449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:266
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):152, 75

               
               
               Conread position:234-632
               
               
               Cow position:chr10:31528140-31527760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:277
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):87, 110

               
               
               Conread position:235-423
               
               
               Cow position:chr10:17448037-17448220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):179, 28

               
               
               Conread position:235-593
               
               
               Cow position:chr10:29102170-29102526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:249
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):40, 116

               
               
               Conread position:235-593
               
               
               Cow position:chr10:50134647-50135002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:253
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):177, 15

               
               
               Conread position:235-629
               
               
               Cow position:chr10:69564778-69564372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:277
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):46, 127

               
               
               Conread position:235-632
               
               
               Cow position:chr10:56079989-56080408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:293
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):83, 68

               
               
               Conread position:236-416
               
               
               Cow position:chr10:48353771-48353951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):89, 50

               
               
               Conread position:236-505
               
               
               Cow position:chr10:55395808-55396084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):63, 218

               
               
               Conread position:236-539
               
               
               Cow position:chr10:6664201-6663886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:210
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):87, 33

               
               
               Conread position:236-561
               
               
               Cow position:chr10:2201964-2202287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):86, 27

               
               
               Conread position:236-594
               
               
               Cow position:chr10:4184374-4183995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 119

               
               
               Conread position:236-594
               
               
               Cow position:chr10:45658310-45657950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:253
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):71, 35

               
               
               Conread position:236-608
               
               
               Cow position:chr10:29339245-29339598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):57, 75

               
               
               Conread position:236-621
               
               
               Cow position:chr10:52569766-52569369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:277
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):91, 178

               
               
               Conread position:236-625
               
               
               Cow position:chr10:22509006-22509412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:264
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):82, 123

               
               
               Conread position:236-628
               
               
               Cow position:chr10:19372163-19372558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:281
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):7, 114

               
               
               Conread position:236-631
               
               
               Cow position:chr10:35862061-35862463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:274
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):85, 19

               
               
               Conread position:236-631
               
               
               Cow position:chr10:57461524-57461132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:276
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):62, 81

               
               
               Conread position:236-632
               
               
               Cow position:chr10:4311332-4310954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:267
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):172, 38

               
               
               Conread position:236-632
               
               
               Cow position:chr10:6235288-6235657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:271
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):178, 43

               
               
               Conread position:236-632
               
               
               Cow position:chr10:9575878-9576273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:272
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):85, 159

               
               
               Conread position:236-632
               
               
               Cow position:chr10:28152225-28152617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 33

               
               
               Conread position:236-632
               
               
               Cow position:chr10:39387619-39387226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 105

               
               
               Conread position:236-632
               
               
               Cow position:chr10:46195951-46195558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:259
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):75, 181

               
               
               Conread position:236-632
               
               
               Cow position:chr10:50533707-50534107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:273
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):64, 33

               
               
               Conread position:236-632
               
               
               Cow position:chr10:51944529-51944128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:263
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):56, 86

               
               
               Conread position:236-632
               
               
               Cow position:chr10:69567992-69567620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:267
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):173, 56

               
               
               Conread position:236-633
               
               
               Cow position:chr10:10469134-10468743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:275
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):152, 23

               
               
               Conread position:236-633
               
               
               Cow position:chr10:33914897-33915286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:277
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):77, 104

               
               
               Conread position:236-633
               
               
               Cow position:chr10:54947973-54948365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:277
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):146, 86

               
               
               Conread position:237-625
               
               
               Cow position:chr10:63032054-63031654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:263
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):80, 123

               
               
               Conread position:240-632
               
               
               Cow position:chr10:721455-721065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 7

               
               
               Conread position:242-420
               
               
               Cow position:chr10:58149005-58149188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):79, 112

               
               
               Conread position:242-631
               
               
               Cow position:chr10:32417508-32417131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:265
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):91, 21

               
               
               Conread position:242-632
               
               
               Cow position:chr10:21657577-21657186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:262
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):82, 40

               
               
               Conread position:242-632
               
               
               Cow position:chr10:25699826-25699429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:280
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):68, 117

               
               
               Conread position:242-632
               
               
               Cow position:chr10:30522899-30523291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:263
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):79, 243

               
               
               Conread position:242-632
               
               
               Cow position:chr10:52296661-52296263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 163

               
               
               Conread position:242-632
               
               
               Cow position:chr10:54848942-54848544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 160

               
               
               Conread position:242-632
               
               
               Cow position:chr10:56705439-56705818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:255
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):171, 50

               
               
               Conread position:242-632
               
               
               Cow position:chr10:60388616-60388993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:258
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):142, 29

               
               
               Conread position:243-516
               
               
               Cow position:chr10:28194198-28194480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):66, 111

               
               
               Conread position:243-631
               
               
               Cow position:chr10:1423996-1423598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:283
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):70, 114

               
               
               Conread position:243-631
               
               
               Cow position:chr10:26209068-26209494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:295
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):50, 214

               
               
               Conread position:243-632
               
               
               Cow position:chr10:669047-668648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:268
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):50, 176

               
               
               Conread position:243-632
               
               
               Cow position:chr10:40420691-40421079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 84

               
               
               Conread position:243-632
               
               
               Cow position:chr10:48257112-48257513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:275
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):47, 106

               
               
               Conread position:243-632
               
               
               Cow position:chr10:58557331-58556962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:262
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):246, 28

               
               
               Conread position:244-632
               
               
               Cow position:chr10:12392443-12392837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:272
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):76, 15

               
               
               Conread position:244-632
               
               
               Cow position:chr10:23500063-23500450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:268
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):14, 118

               
               
               Conread position:246-437
               
               
               Cow position:chr10:30929724-30929919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):47, 167

               
               
               Conread position:246-438
               
               
               Cow position:chr10:23071581-23071785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):82, 113

               
               
               Conread position:246-452
               
               
               Cow position:chr10:51727265-51727475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):67, 96

               
               
               Conread position:246-506
               
               
               Cow position:chr10:10138021-10137763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):52, 96

               
               
               Conread position:246-584
               
               
               Cow position:chr10:52695566-52695914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:231
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):61, 211

               
               
               Conread position:246-624
               
               
               Cow position:chr10:57142043-57142437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:267
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):56, 238

               
               
               Conread position:246-625
               
               
               Cow position:chr10:52589538-52589919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:257
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):146, 53

               
               
               Conread position:246-632
               
               
               Cow position:chr10:10985351-10985729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:268
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):74, 56

               
               
               Conread position:246-632
               
               
               Cow position:chr10:13390905-13391287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:262
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):155, 48

               
               
               Conread position:246-632
               
               
               Cow position:chr10:21082533-21082161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:263
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):168, 51

               
               
               Conread position:246-632
               
               
               Cow position:chr10:48255081-48255457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:262
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):168, 52

               
               
               Conread position:246-632
               
               
               Cow position:chr10:56828159-56828555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:269
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):69, 200

               
               
               Conread position:246-632
               
               
               Cow position:chr10:58718814-58718419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:280
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):61, 20

               
               
               Conread position:246-632
               
               
               Cow position:chr10:67626840-67627221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:267
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):67, 20

               
               
               Conread position:246-645
               
               
               Cow position:chr10:42746071-42745666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 20

               
               
               Conread position:247-622
               
               
               Cow position:chr10:66194143-66194528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 5

               
               
               Conread position:247-645
               
               
               Cow position:chr10:18042342-18041938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 16

               
               
               Conread position:248-621
               
               
               Cow position:chr10:45476060-45476441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:262
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):80, 119

               
               
               Conread position:248-632
               
               
               Cow position:chr10:6505511-6505127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:260
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):21, 165

               
               
               Conread position:248-632
               
               
               Cow position:chr10:7366633-7367023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:266
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):112, 49

               
               
               Conread position:249-631
               
               
               Cow position:chr10:1488986-1488616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:266
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):63, 94

               
               
               Conread position:249-632
               
               
               Cow position:chr10:35802206-35802603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:280
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):64, 14

               
               
               Conread position:250-419
               
               
               Cow position:chr10:46575663-46575493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):69, 36

               
               
               Conread position:251-632
               
               
               Cow position:chr10:10720516-10720910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:273
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):54, 18

               
               
               Conread position:255-632
               
               
               Cow position:chr10:29188200-29188595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:254
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):70, 106

               
               
               Conread position:260-550
               
               
               Cow position:chr10:42123442-42123746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):59, 99

               
               
               Conread position:262-632
               
               
               Cow position:chr10:52278869-52278493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:254
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):59, 85

               
               
               Conread position:264-632
               
               
               Cow position:chr10:11221832-11221476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:253
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):150, 36

               
               
               Conread position:271-628
               
               
               Cow position:chr10:47543215-47542860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:255
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):56, 80

               
               
               Conread position:271-645
               
               
               Cow position:chr10:53247872-53248254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:261
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):45, 72

               
               
               Conread position:273-632
               
               
               Cow position:chr10:15871747-15872097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:246
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):154, 39

               
               
               Conread position:276-611
               
               
               Cow position:chr10:24375668-24375336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):221, 65

               
               
               Conread position:276-632
               
               
               Cow position:chr10:53674946-53674589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:253
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):138, 40

               
               
               Conread position:285-632
               
               
               Cow position:chr10:23886334-23886683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:247
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):14, 74

               
               
               Conread position:287-593
               
               
               Cow position:chr10:35778789-35779096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):121, 12

               
               
               Conread position:294-632
               
               
               Cow position:chr10:31779162-31779502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):66, 47

               
               
               Conread position:297-632
               
               
               Cow position:chr10:34430122-34430449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:227
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):111, 44

               
               
               Conread position:298-631
               
               
               Cow position:chr10:2304277-2304611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):22, 49

               
               
               Conread position:298-632
               
               
               Cow position:chr10:43509102-43508761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):128, 43

               
               
               Conread position:298-632
               
               
               Cow position:chr10:45770148-45769806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:231
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):22, 49

               
               
               Conread position:298-632
               
               
               Cow position:chr10:59843806-59844157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):112, 43

               
               
               Conread position:298-633
               
               
               Cow position:chr10:22049355-22049018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):200, 36

               
               
               Conread position:299-632
               
               
               Cow position:chr10:15318987-15318654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):65, 42

               
               
               Conread position:299-632
               
               
               Cow position:chr10:24732404-24732076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:237
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):110, 22

               
               
               Conread position:299-633
               
               
               Cow position:chr10:35902853-35903180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):19, 39

               
               
               Conread position:299-633
               
               
               Cow position:chr10:41802791-41803131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:231
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):60, 21

               
               
               Conread position:300-625
               
               
               Cow position:chr10:29919736-29920060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):12, 43

               
               
               Conread position:302-629
               
               
               Cow position:chr10:8923377-8923043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):95, 25

               
               
               Conread position:303-632
               
               
               Cow position:chr10:54477199-54476878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):111, 38

               
               
               Conread position:304-629
               
               
               Cow position:chr10:47412011-47412339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:230
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):108, 23

               
               
               Conread position:305-628
               
               
               Cow position:chr10:8077068-8077381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):193, 22

               
               
               Conread position:305-632
               
               
               Cow position:chr10:29279541-29279208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:223
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):101, 36

               
               
               Conread position:305-632
               
               
               Cow position:chr10:52046966-52046629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):94, 36

               
               
               Conread position:306-632
               
               
               Cow position:chr10:38725752-38725426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):29, 99

               
               
               Conread position:310-632
               
               
               Cow position:chr10:58259435-58259749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:310-632
               
               
               Cow position:chr10:60722070-60722378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):7, 20

               
               
               Conread position:311-627
               
               
               Cow position:chr10:20997196-20997506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:220
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):10, 42

               
               
               Conread position:312-622
               
               
               Cow position:chr10:33732784-33733093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):94, 29

               
               
               Conread position:314-625
               
               
               Cow position:chr10:53934666-53934968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):202, 27

               
               
               Conread position:314-632
               
               
               Cow position:chr10:15462577-15462265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:215
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):93, 19

               
               
               Conread position:314-632
               
               
               Cow position:chr10:20132443-20132761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:227
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):92, 7

               
               
               Conread position:316-632
               
               
               Cow position:chr10:59839205-59839519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):91, 17

               
               
               Conread position:319-624
               
               
               Cow position:chr10:46492913-46493229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:221
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):89, 22

               
               
               Conread position:319-632
               
               
               Cow position:chr10:11213194-11212878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:203
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):150, 88

               
               
               Conread position:319-632
               
               
               Cow position:chr10:22321605-22321285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):89, 145

               
               
               Conread position:319-632
               
               
               Cow position:chr10:23936559-23936249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:221
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):88, 93

               
               
               Conread position:319-632
               
               
               Cow position:chr10:29252246-29251928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):76, 60

               
               
               Conread position:319-632
               
               
               Cow position:chr10:52113591-52113899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 31

               
               
               Conread position:319-635
               
               
               Cow position:chr10:24022201-24022520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:220
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):89, 16

               
               
               Conread position:319-645
               
               
               Cow position:chr10:51696823-51696506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):76, 137

               
               
               Conread position:320-626
               
               
               Cow position:chr10:53357977-53357670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):176, 51

               
               
               Conread position:320-629
               
               
               Cow position:chr10:65423823-65424142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:224
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):79, 21

               
               
               Conread position:320-632
               
               
               Cow position:chr10:39109935-39110228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):14, 22

               
               
               Conread position:320-632
               
               
               Cow position:chr10:53973923-53973610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):244, 131

               
               
               Conread position:321-629
               
               
               Cow position:chr10:10043027-10043324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):105, 71

               
               
               Conread position:321-631
               
               
               Cow position:chr10:15115695-15115382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):59, 146

               
               
               Conread position:321-632
               
               
               Cow position:chr10:24745199-24744894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):147, 28

               
               
               Conread position:323-588
               
               
               Cow position:chr10:68829207-68829470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):91, 18

               
               
               Conread position:323-619
               
               
               Cow position:chr10:55930275-55929976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):82, 18

               
               
               Conread position:323-631
               
               
               Cow position:chr10:22567373-22567671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):23, 18

               
               
               Conread position:323-631
               
               
               Cow position:chr10:28670740-28671055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):85, 18

               
               
               Conread position:323-631
               
               
               Cow position:chr10:29166350-29166045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):194, 18

               
               
               Conread position:323-631
               
               
               Cow position:chr10:30440969-30441278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):91, 18

               
               
               Conread position:323-631
               
               
               Cow position:chr10:59675177-59675487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:229
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):91, 26

               
               
               Conread position:323-632
               
               
               Cow position:chr10:1749662-1749341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):146, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr10:13586781-13586480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):86, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr10:15293343-15293038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:229
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):82, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr10:24132746-24133054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):174, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr10:27749745-27749441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):92, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr10:35752885-35753194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:212
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):91, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr10:36002275-36001969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 30

               
               
               Conread position:323-632
               
               
               Cow position:chr10:53336326-53336637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:217
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):20, 27

               
               
               Conread position:323-632
               
               
               Cow position:chr10:65133021-65132725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:215
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):175, 18

               
               
               Conread position:324-632
               
               
               Cow position:chr10:2449427-2449119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:218
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):79, 17

               
               
               Conread position:324-632
               
               
               Cow position:chr10:28105003-28105306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:219
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):76, 17

               
               
               Conread position:325-624
               
               
               Cow position:chr10:44783422-44783115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):48, 26

               
               
               Conread position:325-631
               
               
               Cow position:chr10:9083377-9083066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):91, 26

               
               
               Conread position:328-632
               
               
               Cow position:chr10:22396326-22396021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):67, 261

               
               
               Conread position:329-631
               
               
               Cow position:chr10:38518555-38518864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:203
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):86, 80

               
               
               Conread position:330-631
               
               
               Cow position:chr10:35887326-35887639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:210
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):83, 11

               
               
               Conread position:331-584
               
               
               Cow position:chr10:42892900-42893150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:169
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:335-631
               
               
               Cow position:chr10:32583978-32583683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):73, 126

               
               
               Conread position:335-632
               
               
               Cow position:chr10:28038868-28039166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):79, 6

               
               
               Conread position:338-620
               
               
               Cow position:chr10:31374023-31374320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):36, 203

               
               
               Conread position:340-632
               
               
               Cow position:chr10:6038278-6038569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):108, 28

               
               
               Conread position:340-632
               
               
               Cow position:chr10:29588778-29589074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):66, 112

               
               
               Conread position:341-632
               
               
               Cow position:chr10:21462303-21462007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):68, 72

               
               
               Conread position:343-632
               
               
               Cow position:chr10:24548308-24548024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:203
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):77, 47

               
               
               Conread position:351-632
               
               
               Cow position:chr10:29360969-29360674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):54, 142

               
               
               Conread position:351-632
               
               
               Cow position:chr10:53084220-53083931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):56, 61

               
               
               Conread position:352-623
               
               
               Cow position:chr10:13163399-13163672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):100, 55

               
               
               Conread position:352-632
               
               
               Cow position:chr10:1428089-1427806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):21, 108

               
               
               Conread position:360-632
               
               
               Cow position:chr10:22520120-22520400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):48, 111

               
               
               Conread position:360-632
               
               
               Cow position:chr10:59588135-59588401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):87, 47

               
               
               Conread position:361-613
               
               
               Cow position:chr10:59164062-59164311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):46, 42

               
               
               Conread position:361-627
               
               
               Cow position:chr10:29070197-29069929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):38, 89

               
               
               Conread position:361-628
               
               
               Cow position:chr10:31791219-31791489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):38, 97

               
               
               Conread position:361-632
               
               
               Cow position:chr10:10964028-10963753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):40, 95

               
               
               Conread position:361-632
               
               
               Cow position:chr10:35767049-35767312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):105, 35

               
               
               Conread position:362-629
               
               
               Cow position:chr10:14098293-14098552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):181, 46

               
               
               Conread position:362-631
               
               
               Cow position:chr10:34906752-34906476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):50, 25

               
               
               Conread position:362-632
               
               
               Cow position:chr10:17176072-17175800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):5, 92

               
               
               Conread position:362-632
               
               
               Cow position:chr10:43287832-43288103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):5, 21

               
               
               Conread position:365-632
               
               
               Cow position:chr10:12315186-12314934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):133, 26

               
               
               Conread position:366-632
               
               
               Cow position:chr10:32029797-32030058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):40, 84

               
               
               Conread position:366-632
               
               
               Cow position:chr10:61839625-61839366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):132, 46

               
               
               Conread position:368-608
               
               
               Cow position:chr10:39303813-39304062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):40, 231

               
               
               Conread position:368-630
               
               
               Cow position:chr10:24744579-24744316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):40, 103

               
               
               Conread position:373-630
               
               
               Cow position:chr10:50609571-50609306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):10, 35

               
               
               Conread position:379-631
               
               
               Cow position:chr10:35857039-35857288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:190
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):35, 28

               
               
               Conread position:380-632
               
               
               Cow position:chr10:1088051-1087785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):28, 175

               
               
               Conread position:384-632
               
               
               Cow position:chr10:6173375-6173126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):25, 78

               
               
               Conread position:390-632
               
               
               Cow position:chr10:60032562-60032811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):76, 61

               
               
               Conread position:393-632
               
               
               Cow position:chr10:6986449-6986215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):108, 14

               
               
               Conread position:399-630
               
               
               Cow position:chr10:25045694-25045914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):99, 8

               
               
               Conread position:399-632
               
               
               Cow position:chr10:19094647-19094414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):23, 54

               
               
               Conread position:399-632
               
               
               Cow position:chr10:37444217-37444450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):23, 59

               
               
               Conread position:402-632
               
               
               Cow position:chr10:37528609-37528839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):5, 10

               
               
               Conread position:402-632
               
               
               Cow position:chr10:41255980-41255754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):91, 50

               
               
               Conread position:402-632
               
               
               Cow position:chr10:57457331-57457098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):95, 45

               
               
               Conread position:402-650
               
               
               Cow position:chr10:32093801-32093551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):41, 54

               
               
               Conread position:410-632
               
               
               Cow position:chr10:20505533-20505305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:411-607
               
               
               Cow position:chr10:28222909-28222719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):133, 35

               
               
               Conread position:411-632
               
               
               Cow position:chr10:17983168-17982949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):78, 9

               
               
               Conread position:411-632
               
               
               Cow position:chr10:20735688-20735474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):87, 37

               
               
               Conread position:411-632
               
               
               Cow position:chr10:34554105-34554322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:167
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):125, 47

               
               
               Conread position:411-632
               
               
               Cow position:chr10:47165855-47165643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:411-632
               
               
               Cow position:chr10:48388284-48388501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):87, 47

               
               
               Conread position:412-631
               
               
               Cow position:chr10:64878004-64878228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):97, 39

               
               
               Conread position:414-629
               
               
               Cow position:chr10:52152512-52152292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):27, 67

               
               
               Conread position:429-645
               
               
               Cow position:chr10:35026448-35026233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):69, 22

               
               
               Conread position:443-628
               
               
               Cow position:chr10:34300457-34300277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):94, 9

               
               
               Conread position:443-632
               
               
               Cow position:chr10:43450957-43451153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):57, 13

               
               
               Conread position:444-632
               
               
               Cow position:chr10:24871845-24871651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:446-632
               
               
               Cow position:chr10:25882373-25882192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:447-632
               
               
               Cow position:chr10:9798244-9798427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):53, 144

               
               
               Conread position:451-631
               
               
               Cow position:chr10:38513125-38512941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:456-632
               
               
               Cow position:chr10:5264641-5264466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:458-629
               
               
               Cow position:chr10:14975853-14976023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):40, 86

               
               
               Conread position:458-632
               
               
               Cow position:chr10:6516240-6516420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:458-632
               
               
               Cow position:chr10:31266390-31266562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):31, 62

               
               
               Conread position:458-632
               
               
               Cow position:chr10:48377698-48377879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:458-632
               
               
               Cow position:chr10:49569144-49568971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):12, 28

               
               
               Conread position:459-632
               
               
               Cow position:chr10:5607585-5607410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):41, 109

               
               
               Conread position:463-628
               
               
               Cow position:chr10:888863-888696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):26, 105

               
               
               Conread position:463-632
               
               
               Cow position:chr10:6346014-6345839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):31, 10

               
               
               Conread position:463-632
               
               
               Cow position:chr10:9445076-9445247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:463-645
               
               
               Cow position:chr10:61305211-61305034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):80, 26

               
               
               Conread position:467-626
               
               
               Cow position:chr10:40645862-40645706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:470-629
               
               
               Cow position:chr10:11060128-11059970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:470-631
               
               
               Cow position:chr10:36896331-36896172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):19, 66

               
               
               Conread position:470-631
               
               
               Cow position:chr10:38223671-38223834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):73, 86

               
               
               Conread position:471-632
               
               
               Cow position:chr10:57736232-57736398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):27, 96

               
               
               Conread position:471-632
               
               
               Cow position:chr10:59141360-59141194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:471-632
               
               
               Cow position:chr10:69698914-69698750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):27, 161

               
               
               Conread position:471-633
               
               
               Cow position:chr10:54936180-54936347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:472-632
               
               
               Cow position:chr10:37822795-37822961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):71, 21

               
               
               Conread position:481-632
               
               
               Cow position:chr10:39646183-39646338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:482-631
               
               
               Cow position:chr10:58935277-58935423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):60, 14

               
               
               Conread position:487-632
               
               
               Cow position:chr10:41916767-41916910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:111
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:492-632
               
               
               Cow position:chr10:22786806-22786666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:492-632
               
               
               Cow position:chr10:47159014-47158873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:110
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):13, 52

               
               
               Conread position:492-632
               
               
               Cow position:chr10:59675698-59675840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:493-625
               
               
               Cow position:chr10:15874529-15874666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:493-630
               
               
               Cow position:chr10:2708286-2708146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:493-632
               
               
               Cow position:chr10:10699602-10699744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:110
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:494-631
               
               
               Cow position:chr10:24153087-24153231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:495-624
               
               
               Cow position:chr10:30106203-30106328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):48, 70

               
               
               Conread position:495-629
               
               
               Cow position:chr10:8923842-8923704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:495-630
               
               
               Cow position:chr10:8934386-8934255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:105
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:495-630
               
               
               Cow position:chr10:23376559-23376695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:495-630
               
               
               Cow position:chr10:32174635-32174496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:495-631
               
               
               Cow position:chr10:32928670-32928534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:106
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):48, 76

               
               
               Conread position:495-632
               
               
               Cow position:chr10:77293-77156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr10:1719621-1719761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):45, 25

               
               
               Conread position:495-632
               
               
               Cow position:chr10:15294268-15294130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr10:16986143-16986005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr10:19678775-19678634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr10:25509605-25509465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr10:32503352-32503216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):42, 90

               
               
               Conread position:495-632
               
               
               Cow position:chr10:32775012-32774882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr10:38015795-38015657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):92, 39

               
               
               Conread position:495-633
               
               
               Cow position:chr10:20446998-20446865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:495-633
               
               
               Cow position:chr10:47976789-47976653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):89, 14

               
               
               Conread position:495-645
               
               
               Cow position:chr10:805100-804948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):91, 46

               
               
               Conread position:495-670
               
               
               Cow position:chr10:35246036-35246215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:497-632
               
               
               Cow position:chr10:35715807-35715944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:498-632
               
               
               Cow position:chr10:28836123-28835995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:109
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:501-632
               
               
               Cow position:chr10:29816490-29816355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:103
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:501-633
               
               
               Cow position:chr10:25475480-25475344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:105
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:503-632
               
               
               Cow position:chr10:5113486-5113352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:107
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:503-632
               
               
               Cow position:chr10:42230556-42230431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:106
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:503-645
               
               
               Cow position:chr10:20897200-20897056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):75, 47

               
               
               Conread position:505-632
               
               
               Cow position:chr10:9586624-9586751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:99
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:505-632
               
               
               Cow position:chr10:26607991-26608122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:505-632
               
               
               Cow position:chr10:30914393-30914263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:506-631
               
               
               Cow position:chr10:49948177-49948306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:509-632
               
               
               Cow position:chr10:20294772-20294900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:101
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:514-632
               
               
               Cow position:chr10:41941692-41941814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:98
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:526-631
               
               
               Cow position:chr10:69998072-69998181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:93
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):11, 19

               
               
               Conread position:191-632
               
               
               Cow position:chr11:18706609-18707042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:283
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):101, 49

               
               
               Conread position:193-419
               
               
               Cow position:chr11:8584538-8584316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):17, 41

               
               
               Conread position:193-580
               
               
               Cow position:chr11:32054967-32055360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:263
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):122, 34

               
               
               Conread position:196-420
               
               
               Cow position:chr11:37099952-37100183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):7, 152

               
               
               Conread position:196-632
               
               
               Cow position:chr11:39115692-39115265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:291
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):187, 103

               
               
               Conread position:197-603
               
               
               Cow position:chr11:65058394-65058814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:275
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):129, 158

               
               
               Conread position:197-614
               
               
               Cow position:chr11:36286921-36286488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:301
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):124, 35

               
               
               Conread position:197-632
               
               
               Cow position:chr11:18699087-18698646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):208, 9

               
               
               Conread position:198-449
               
               
               Cow position:chr11:56311384-56311641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):38, 29

               
               
               Conread position:201-596
               
               
               Cow position:chr11:37804343-37804746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:271
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):116, 25

               
               
               Conread position:202-552
               
               
               Cow position:chr11:49057595-49057255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):14, 30

               
               
               Conread position:202-578
               
               
               Cow position:chr11:8544803-8545186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:262
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):11, 54

               
               
               Conread position:204-395
               
               
               Cow position:chr11:25968638-25968842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):16, 150

               
               
               Conread position:204-420
               
               
               Cow position:chr11:9699041-9699257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):32, 98

               
               
               Conread position:205-631
               
               
               Cow position:chr11:57724611-57725056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:282
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):34, 164

               
               
               Conread position:206-404
               
               
               Cow position:chr11:19657003-19657210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):23, 154

               
               
               Conread position:206-449
               
               
               Cow position:chr11:25119724-25119976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:206-558
               
               
               Cow position:chr11:7273030-7273382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:233
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):224, 30

               
               
               Conread position:206-631
               
               
               Cow position:chr11:20238886-20238445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:287
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):22, 223

               
               
               Conread position:206-632
               
               
               Cow position:chr11:64029059-64029485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:294
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):113, 24

               
               
               Conread position:207-406
               
               
               Cow position:chr11:33374172-33373967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):13, 23

               
               
               Conread position:207-524
               
               
               Cow position:chr11:47310776-47311104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):108, 153

               
               
               Conread position:207-562
               
               
               Cow position:chr11:32693286-32693629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):31, 21

               
               
               Conread position:207-632
               
               
               Cow position:chr11:41549128-41549563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:287
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):21, 58

               
               
               Conread position:207-632
               
               
               Cow position:chr11:47899457-47899048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:295
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):289, 25

               
               
               Conread position:208-420
               
               
               Cow position:chr11:56288753-56288533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):12, 151

               
               
               Conread position:208-563
               
               
               Cow position:chr11:55494871-55494521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):175, 69

               
               
               Conread position:208-632
               
               
               Cow position:chr11:30764695-30764251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:308
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):118, 19

               
               
               Conread position:209-446
               
               
               Cow position:chr11:28078698-28078461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):13, 108

               
               
               Conread position:209-457
               
               
               Cow position:chr11:5231444-5231699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):109, 18

               
               
               Conread position:209-615
               
               
               Cow position:chr11:65607484-65607905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:289
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):29, 141

               
               
               Conread position:209-624
               
               
               Cow position:chr11:31413663-31413230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:284
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):113, 54

               
               
               Conread position:210-325
               
               
               Cow position:chr11:53460903-53460788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:91
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:210-616
               
               
               Cow position:chr11:4207515-4207100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:285
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):83, 26

               
               
               Conread position:210-623
               
               
               Cow position:chr11:10095544-10095125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 18

               
               
               Conread position:210-632
               
               
               Cow position:chr11:52297020-52297452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 21

               
               
               Conread position:211-419
               
               
               Cow position:chr11:69417608-69417390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):25, 140

               
               
               Conread position:211-632
               
               
               Cow position:chr11:38236445-38236015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 17

               
               
               Conread position:211-645
               
               
               Cow position:chr11:77683356-77682930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:276
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):197, 88

               
               
               Conread position:211-658
               
               
               Cow position:chr11:26143899-26144339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:316
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):116, 16

               
               
               Conread position:211-665
               
               
               Cow position:chr11:30638748-30639210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:311
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):110, 135

               
               
               Conread position:212-450
               
               
               Cow position:chr11:3715022-3714778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):109, 16

               
               
               Conread position:212-496
               
               
               Cow position:chr11:30370304-30370018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):11, 31

               
               
               Conread position:212-556
               
               
               Cow position:chr11:6245522-6245170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:242
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):87, 19

               
               
               Conread position:212-621
               
               
               Cow position:chr11:65762382-65762814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:284
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):81, 35

               
               
               Conread position:212-628
               
               
               Cow position:chr11:31866784-31866385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:276
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):14, 206

               
               
               Conread position:212-630
               
               
               Cow position:chr11:40459303-40458894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:303
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):88, 13

               
               
               Conread position:212-632
               
               
               Cow position:chr11:1380886-1380466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:292
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):11, 144

               
               
               Conread position:212-632
               
               
               Cow position:chr11:6399865-6400301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:293
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):119, 17

               
               
               Conread position:212-632
               
               
               Cow position:chr11:16342045-16342470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:289
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):202, 83

               
               
               Conread position:213-402
               
               
               Cow position:chr11:17369727-17369536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):96, 15

               
               
               Conread position:213-405
               
               
               Cow position:chr11:80370318-80370117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):8, 139

               
               
               Conread position:213-630
               
               
               Cow position:chr11:25791491-25791919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:294
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):102, 135

               
               
               Conread position:213-631
               
               
               Cow position:chr11:1485659-1486094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 17

               
               
               Conread position:213-632
               
               
               Cow position:chr11:15504315-15503872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:291
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):21, 138

               
               
               Conread position:214-377
               
               
               Cow position:chr11:51683414-51683246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):105, 14

               
               
               Conread position:214-416
               
               
               Cow position:chr11:36136309-36136102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):126, 199

               
               
               Conread position:214-539
               
               
               Cow position:chr11:27907972-27907659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):23, 129

               
               
               Conread position:214-605
               
               
               Cow position:chr11:68913344-68912941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:274
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):103, 146

               
               
               Conread position:214-615
               
               
               Cow position:chr11:23271806-23272209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:270
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):95, 18

               
               
               Conread position:214-630
               
               
               Cow position:chr11:77546596-77546192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:289
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):9, 18

               
               
               Conread position:214-632
               
               
               Cow position:chr11:46747662-46748095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 17

               
               
               Conread position:214-632
               
               
               Cow position:chr11:47193696-47193295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:271
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):9, 80

               
               
               Conread position:214-632
               
               
               Cow position:chr11:58588529-58588116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:281
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):30, 74

               
               
               Conread position:215-420
               
               
               Cow position:chr11:15366776-15366985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):25, 130

               
               
               Conread position:215-420
               
               
               Cow position:chr11:87171876-87172089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):77, 143

               
               
               Conread position:215-421
               
               
               Cow position:chr11:3797902-3797702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):124, 17

               
               
               Conread position:215-426
               
               
               Cow position:chr11:36521081-36520852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):13, 144

               
               
               Conread position:215-505
               
               
               Cow position:chr11:53817055-53816760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):104, 131

               
               
               Conread position:215-557
               
               
               Cow position:chr11:32254016-32254371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:247
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):101, 132

               
               
               Conread position:215-625
               
               
               Cow position:chr11:55876082-55875670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:264
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):22, 50

               
               
               Conread position:215-626
               
               
               Cow position:chr11:39462821-39462395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 101

               
               
               Conread position:215-631
               
               
               Cow position:chr11:2084347-2083920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 146

               
               
               Conread position:215-631
               
               
               Cow position:chr11:15285424-15285845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:278
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):98, 70

               
               
               Conread position:215-632
               
               
               Cow position:chr11:36182890-36182460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:290
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):104, 16

               
               
               Conread position:215-632
               
               
               Cow position:chr11:55744670-55744245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:290
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):22, 139

               
               
               Conread position:215-632
               
               
               Cow position:chr11:63470055-63469654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:272
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):32, 13

               
               
               Conread position:215-632
               
               
               Cow position:chr11:66734028-66733607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:283
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):87, 14

               
               
               Conread position:216-325
               
               
               Cow position:chr11:24551587-24551481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:89
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:216-326
               
               
               Cow position:chr11:72568267-72568377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:91
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:216-385
               
               
               Cow position:chr11:36847368-36847190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):101, 144

               
               
               Conread position:216-389
               
               
               Cow position:chr11:37565066-37564892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):97, 15

               
               
               Conread position:216-404
               
               
               Cow position:chr11:77227729-77227542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):90, 83

               
               
               Conread position:216-406
               
               
               Cow position:chr11:81065852-81066048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):101, 12

               
               
               Conread position:216-415
               
               
               Cow position:chr11:75915186-75914982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):23, 126

               
               
               Conread position:216-418
               
               
               Cow position:chr11:68883919-68883708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):89, 143

               
               
               Conread position:216-422
               
               
               Cow position:chr11:62742451-62742661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):102, 15

               
               
               Conread position:216-424
               
               
               Cow position:chr11:19578821-19579033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):23, 62

               
               
               Conread position:216-450
               
               
               Cow position:chr11:77013969-77013738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):193, 111

               
               
               Conread position:216-452
               
               
               Cow position:chr11:5218966-5219207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):25, 15

               
               
               Conread position:216-453
               
               
               Cow position:chr11:16315075-16314822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):15, 136

               
               
               Conread position:216-456
               
               
               Cow position:chr11:39060406-39060654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):97, 134

               
               
               Conread position:216-538
               
               
               Cow position:chr11:70756675-70756348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):21, 78

               
               
               Conread position:216-539
               
               
               Cow position:chr11:40395638-40395304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:229
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):18, 142

               
               
               Conread position:216-539
               
               
               Cow position:chr11:70206516-70206189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):22, 131

               
               
               Conread position:216-563
               
               
               Cow position:chr11:45742568-45742223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:247
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):112, 20

               
               
               Conread position:216-567
               
               
               Cow position:chr11:80756588-80756946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):15, 85

               
               
               Conread position:216-578
               
               
               Cow position:chr11:76890239-76889875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:252
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):103, 14

               
               
               Conread position:216-582
               
               
               Cow position:chr11:7874340-7873970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:255
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):25, 148

               
               
               Conread position:216-593
               
               
               Cow position:chr11:13592936-13592548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 15

               
               
               Conread position:216-605
               
               
               Cow position:chr11:64077302-64077703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:259
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):21, 143

               
               
               Conread position:216-613
               
               
               Cow position:chr11:63433867-63434268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:264
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):105, 126

               
               
               Conread position:216-623
               
               
               Cow position:chr11:15772514-15772942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 133

               
               
               Conread position:216-624
               
               
               Cow position:chr11:47351534-47351133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:267
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):100, 148

               
               
               Conread position:216-626
               
               
               Cow position:chr11:42016442-42016861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 15

               
               
               Conread position:216-627
               
               
               Cow position:chr11:59903089-59902664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:271
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):111, 34

               
               
               Conread position:216-627
               
               
               Cow position:chr11:84385440-84385870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:301
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):24, 48

               
               
               Conread position:216-629
               
               
               Cow position:chr11:77758563-77758986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 12

               
               
               Conread position:216-630
               
               
               Cow position:chr11:62490621-62490207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:281
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):11, 48

               
               
               Conread position:216-631
               
               
               Cow position:chr11:48672917-48672474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:298
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):16, 149

               
               
               Conread position:216-632
               
               
               Cow position:chr11:5328985-5328566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:280
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):19, 152

               
               
               Conread position:216-632
               
               
               Cow position:chr11:17278484-17278891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:278
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):27, 50

               
               
               Conread position:216-632
               
               
               Cow position:chr11:17889525-17889955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:293
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):21, 205

               
               
               Conread position:216-632
               
               
               Cow position:chr11:19487280-19487704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:275
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):112, 150

               
               
               Conread position:216-632
               
               
               Cow position:chr11:21549686-21549267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:291
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):15, 216

               
               
               Conread position:216-632
               
               
               Cow position:chr11:30165710-30165280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 143

               
               
               Conread position:216-632
               
               
               Cow position:chr11:33348000-33348413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 48

               
               
               Conread position:216-632
               
               
               Cow position:chr11:34616464-34616040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:296
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):16, 205

               
               
               Conread position:216-632
               
               
               Cow position:chr11:55334117-55333680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:305
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):93, 16

               
               
               Conread position:216-632
               
               
               Cow position:chr11:61203371-61202934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:287
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):20, 81

               
               
               Conread position:216-632
               
               
               Cow position:chr11:70483653-70484090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 12

               
               
               Conread position:216-632
               
               
               Cow position:chr11:81300419-81300841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:296
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):15, 97

               
               
               Conread position:216-633
               
               
               Cow position:chr11:59463442-59463865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:287
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):43, 16

               
               
               Conread position:216-633
               
               
               Cow position:chr11:62663047-62663462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:273
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):104, 32

               
               
               Conread position:216-636
               
               
               Cow position:chr11:62239940-62239517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 148

               
               
               Conread position:216-645
               
               
               Cow position:chr11:30476196-30475757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:293
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):15, 57

               
               
               Conread position:217-371
               
               
               Cow position:chr11:33271623-33271467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):102, 11

               
               
               Conread position:217-406
               
               
               Cow position:chr11:5217262-5217460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):85, 143

               
               
               Conread position:217-406
               
               
               Cow position:chr11:42064027-42064223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):98, 11

               
               
               Conread position:217-420
               
               
               Cow position:chr11:25783909-25783698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):61, 23

               
               
               Conread position:217-436
               
               
               Cow position:chr11:9237650-9237879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):110, 53

               
               
               Conread position:217-519
               
               
               Cow position:chr11:42067062-42066746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):85, 202

               
               
               Conread position:217-536
               
               
               Cow position:chr11:30172498-30172168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):22, 186

               
               
               Conread position:217-570
               
               
               Cow position:chr11:48296222-48295867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):104, 15

               
               
               Conread position:217-574
               
               
               Cow position:chr11:75874574-75874921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):190, 89

               
               
               Conread position:217-608
               
               
               Cow position:chr11:27913484-27913070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:285
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):62, 134

               
               
               Conread position:217-609
               
               
               Cow position:chr11:19591798-19592203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:281
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):111, 46

               
               
               Conread position:217-624
               
               
               Cow position:chr11:15467644-15467249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:268
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):204, 48

               
               
               Conread position:217-627
               
               
               Cow position:chr11:42835757-42836184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:286
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):111, 15

               
               
               Conread position:217-628
               
               
               Cow position:chr11:18484003-18484384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:217-628
               
               
               Cow position:chr11:56729137-56728722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:279
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):14, 90

               
               
               Conread position:217-630
               
               
               Cow position:chr11:77745048-77745477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 138

               
               
               Conread position:217-631
               
               
               Cow position:chr11:82940426-82940845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:290
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):37, 135

               
               
               Conread position:217-632
               
               
               Cow position:chr11:13500210-13499786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 44

               
               
               Conread position:217-632
               
               
               Cow position:chr11:19247006-19247423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 55

               
               
               Conread position:217-632
               
               
               Cow position:chr11:44032204-44031771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 46

               
               
               Conread position:217-632
               
               
               Cow position:chr11:62620574-62620156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:281
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):88, 132

               
               
               Conread position:217-632
               
               
               Cow position:chr11:63065850-63065425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 48

               
               
               Conread position:217-632
               
               
               Cow position:chr11:63519195-63518786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:287
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):14, 35

               
               
               Conread position:217-632
               
               
               Cow position:chr11:70304278-70303853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:288
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):14, 155

               
               
               Conread position:217-645
               
               
               Cow position:chr11:2917395-2917821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:278
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):96, 106

               
               
               Conread position:217-645
               
               
               Cow position:chr11:79728474-79728915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 77

               
               
               Conread position:217-645
               
               
               Cow position:chr11:81162250-81162673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:271
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):191, 26

               
               
               Conread position:218-385
               
               
               Cow position:chr11:44176789-44176618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):99, 18

               
               
               Conread position:218-389
               
               
               Cow position:chr11:8421928-8422099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:218-389
               
               
               Cow position:chr11:42206613-42206440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):103, 45

               
               
               Conread position:218-405
               
               
               Cow position:chr11:7571821-7571627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):11, 128

               
               
               Conread position:218-406
               
               
               Cow position:chr11:6353005-6352810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):85, 161

               
               
               Conread position:218-406
               
               
               Cow position:chr11:42498041-42497846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):98, 141

               
               
               Conread position:218-409
               
               
               Cow position:chr11:41278381-41278183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:149
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):101, 13

               
               
               Conread position:218-412
               
               
               Cow position:chr11:33368269-33368079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):22, 46

               
               
               Conread position:218-420
               
               
               Cow position:chr11:21124413-21124621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):101, 12

               
               
               Conread position:218-437
               
               
               Cow position:chr11:66939395-66939626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):101, 10

               
               
               Conread position:218-450
               
               
               Cow position:chr11:10956676-10956919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):15, 140

               
               
               Conread position:218-450
               
               
               Cow position:chr11:18447304-18447538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):165, 94

               
               
               Conread position:218-451
               
               
               Cow position:chr11:34010547-34010317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):205, 110

               
               
               Conread position:218-488
               
               
               Cow position:chr11:67911970-67912233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):185, 13

               
               
               Conread position:218-537
               
               
               Cow position:chr11:7460429-7460747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):39, 25

               
               
               Conread position:218-624
               
               
               Cow position:chr11:6594032-6594469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:288
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):91, 152

               
               
               Conread position:218-624
               
               
               Cow position:chr11:35347554-35347978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:294
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):101, 143

               
               
               Conread position:218-624
               
               
               Cow position:chr11:42884588-42884991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:282
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):107, 142

               
               
               Conread position:218-627
               
               
               Cow position:chr11:5961502-5961089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 13

               
               
               Conread position:218-628
               
               
               Cow position:chr11:26117542-26117941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:278
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):91, 46

               
               
               Conread position:218-628
               
               
               Cow position:chr11:53778817-53778388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 135

               
               
               Conread position:218-629
               
               
               Cow position:chr11:67804934-67804523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:291
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):35, 54

               
               
               Conread position:218-632
               
               
               Cow position:chr11:2788593-2788151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:299
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):18, 140

               
               
               Conread position:218-632
               
               
               Cow position:chr11:4436527-4436104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:302
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):103, 13

               
               
               Conread position:218-632
               
               
               Cow position:chr11:53773880-53773444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 145

               
               
               Conread position:218-632
               
               
               Cow position:chr11:75479828-75480255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 11

               
               
               Conread position:218-632
               
               
               Cow position:chr11:80923127-80923563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:288
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):19, 47

               
               
               Conread position:218-636
               
               
               Cow position:chr11:5433464-5433035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:274
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):19, 89

               
               
               Conread position:219-415
               
               
               Cow position:chr11:5176187-5176384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):90, 12

               
               
               Conread position:219-420
               
               
               Cow position:chr11:1980069-1980280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):100, 141

               
               
               Conread position:219-428
               
               
               Cow position:chr11:18119698-18119482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):100, 52

               
               
               Conread position:219-434
               
               
               Cow position:chr11:63382002-63382221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):93, 18

               
               
               Conread position:219-451
               
               
               Cow position:chr11:7500944-7500703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):107, 11

               
               
               Conread position:219-531
               
               
               Cow position:chr11:81167835-81168158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:219-584
               
               
               Cow position:chr11:81611944-81611590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):189, 111

               
               
               Conread position:219-621
               
               
               Cow position:chr11:16232761-16233148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:266
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):97, 9

               
               
               Conread position:219-624
               
               
               Cow position:chr11:26066996-26067400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:287
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):102, 12

               
               
               Conread position:219-624
               
               
               Cow position:chr11:76369334-76369742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:274
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):54, 77

               
               
               Conread position:219-631
               
               
               Cow position:chr11:77750564-77750995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 150

               
               
               Conread position:219-632
               
               
               Cow position:chr11:17227458-17227868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 13

               
               
               Conread position:219-632
               
               
               Cow position:chr11:23251403-23251832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:292
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):94, 51

               
               
               Conread position:219-632
               
               
               Cow position:chr11:54856805-54856406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:276
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):12, 54

               
               
               Conread position:219-632
               
               
               Cow position:chr11:74316902-74316477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:280
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):80, 121

               
               
               Conread position:219-632
               
               
               Cow position:chr11:85723890-85723473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:279
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):124, 192

               
               
               Conread position:219-657
               
               
               Cow position:chr11:28367906-28367446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:303
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):50, 11

               
               
               Conread position:220-449
               
               
               Cow position:chr11:62789321-62789085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):101, 12

               
               
               Conread position:220-452
               
               
               Cow position:chr11:54741884-54742121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):37, 77

               
               
               Conread position:220-593
               
               
               Cow position:chr11:84228528-84228905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:251
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):101, 94

               
               
               Conread position:220-624
               
               
               Cow position:chr11:35724165-35723756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:281
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):87, 140

               
               
               Conread position:220-625
               
               
               Cow position:chr11:2925112-2925512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:269
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):14, 61

               
               
               Conread position:220-632
               
               
               Cow position:chr11:7924413-7924818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:284
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):44, 8

               
               
               Conread position:220-632
               
               
               Cow position:chr11:11125862-11125435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 45

               
               
               Conread position:220-632
               
               
               Cow position:chr11:17321860-17321429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:308
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):27, 11

               
               
               Conread position:220-632
               
               
               Cow position:chr11:78380874-78381275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 122

               
               
               Conread position:221-405
               
               
               Cow position:chr11:30322300-30322490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):98, 63

               
               
               Conread position:221-561
               
               
               Cow position:chr11:32126810-32126454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):82, 142

               
               
               Conread position:221-580
               
               
               Cow position:chr11:30830430-30830791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):94, 10

               
               
               Conread position:221-602
               
               
               Cow position:chr11:34646789-34646395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:263
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):84, 236

               
               
               Conread position:221-632
               
               
               Cow position:chr11:51687543-51687954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:275
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):99, 9

               
               
               Conread position:222-632
               
               
               Cow position:chr11:40466929-40467352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:282
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):14, 139

               
               
               Conread position:222-632
               
               
               Cow position:chr11:50152620-50153047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 243

               
               
               Conread position:224-454
               
               
               Cow position:chr11:18924938-18924695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):96, 136

               
               
               Conread position:224-500
               
               
               Cow position:chr11:51195906-51196173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:186
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):231, 68

               
               
               Conread position:225-632
               
               
               Cow position:chr11:21728099-21728496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:269
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:225-632
               
               
               Cow position:chr11:46580537-46580138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:267
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):46, 7

               
               
               Conread position:227-632
               
               
               Cow position:chr11:49149234-49148820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:279
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):78, 185

               
               
               Conread position:228-416
               
               
               Cow position:chr11:77241889-77241696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):95, 118

               
               
               Conread position:228-449
               
               
               Cow position:chr11:62811484-62811252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):8, 122

               
               
               Conread position:228-534
               
               
               Cow position:chr11:49872700-49873017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):86, 117

               
               
               Conread position:228-584
               
               
               Cow position:chr11:48383718-48383350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:262
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):8, 178

               
               
               Conread position:228-604
               
               
               Cow position:chr11:73796981-73797375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:255
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):97, 124

               
               
               Conread position:228-631
               
               
               Cow position:chr11:32595647-32595239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:277
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):9, 42

               
               
               Conread position:228-632
               
               
               Cow position:chr11:3726478-3726057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:283
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):8, 134

               
               
               Conread position:228-632
               
               
               Cow position:chr11:30708692-30708274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 245

               
               
               Conread position:228-632
               
               
               Cow position:chr11:33293591-33294020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:286
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):8, 126

               
               
               Conread position:228-632
               
               
               Cow position:chr11:45276961-45277385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:289
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):71, 133

               
               
               Conread position:228-632
               
               
               Cow position:chr11:49153128-49152725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 72

               
               
               Conread position:228-632
               
               
               Cow position:chr11:66041460-66041045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:282
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):8, 115

               
               
               Conread position:228-632
               
               
               Cow position:chr11:70382501-70382924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:269
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):8, 134

               
               
               Conread position:229-632
               
               
               Cow position:chr11:866466-866071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):308, 106

               
               
               Conread position:229-637
               
               
               Cow position:chr11:27248674-27248259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:265
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):89, 240

               
               
               Conread position:230-632
               
               
               Cow position:chr11:31417609-31417207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:278
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):6, 134

               
               
               Conread position:232-325
               
               
               Cow position:chr11:83042057-83042150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:94
               
               
               Alignm identity:79
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:232-404
               
               
               Cow position:chr11:46784646-46784478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:232-405
               
               
               Cow position:chr11:58186055-58185885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:232-405
               
               
               Cow position:chr11:79548750-79548935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):33, 130

               
               
               Conread position:232-406
               
               
               Cow position:chr11:6006492-6006314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):80, 124

               
               
               Conread position:232-406
               
               
               Cow position:chr11:29677390-29677208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):92, 126

               
               
               Conread position:232-411
               
               
               Cow position:chr11:36300401-36300580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):87, 31

               
               
               Conread position:232-420
               
               
               Cow position:chr11:10563188-10562994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:232-421
               
               
               Cow position:chr11:77017413-77017226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):171, 74

               
               
               Conread position:232-438
               
               
               Cow position:chr11:15369572-15369353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):96, 127

               
               
               Conread position:232-438
               
               
               Cow position:chr11:57608283-57608490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):92, 50

               
               
               Conread position:232-531
               
               
               Cow position:chr11:27719156-27719449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):29, 87

               
               
               Conread position:232-539
               
               
               Cow position:chr11:72443297-72442979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):85, 128

               
               
               Conread position:232-585
               
               
               Cow position:chr11:70600644-70601001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:247
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):89, 127

               
               
               Conread position:232-586
               
               
               Cow position:chr11:9270555-9270909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 37

               
               
               Conread position:232-608
               
               
               Cow position:chr11:38334704-38334310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:269
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):87, 56

               
               
               Conread position:232-620
               
               
               Cow position:chr11:11558357-11557952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:264
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):14, 49

               
               
               Conread position:232-624
               
               
               Cow position:chr11:41985865-41986264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 115

               
               
               Conread position:232-629
               
               
               Cow position:chr11:81138395-81138000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:274
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):94, 119

               
               
               Conread position:232-630
               
               
               Cow position:chr11:66188138-66188547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 34

               
               
               Conread position:232-631
               
               
               Cow position:chr11:42083636-42083252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):313, 61

               
               
               Conread position:232-632
               
               
               Cow position:chr11:4732527-4732110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:273
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):95, 130

               
               
               Conread position:232-632
               
               
               Cow position:chr11:6233695-6234107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 117

               
               
               Conread position:232-632
               
               
               Cow position:chr11:15632377-15632788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:256
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):88, 55

               
               
               Conread position:232-632
               
               
               Cow position:chr11:21893966-21894382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:283
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):67, 170

               
               
               Conread position:232-632
               
               
               Cow position:chr11:27404888-27405297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:273
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):83, 139

               
               
               Conread position:232-632
               
               
               Cow position:chr11:35153637-35154056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:270
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):56, 39

               
               
               Conread position:232-632
               
               
               Cow position:chr11:35580444-35580025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:272
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):85, 248

               
               
               Conread position:232-632
               
               
               Cow position:chr11:42359276-42358896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:276
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):183, 32

               
               
               Conread position:232-632
               
               
               Cow position:chr11:43646247-43646646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:284
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):42, 67

               
               
               Conread position:232-632
               
               
               Cow position:chr11:45283110-45282708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:266
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):63, 124

               
               
               Conread position:232-632
               
               
               Cow position:chr11:48932406-48932812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 230

               
               
               Conread position:232-632
               
               
               Cow position:chr11:52380689-52381099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:275
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):77, 246

               
               
               Conread position:232-632
               
               
               Cow position:chr11:65157222-65157636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:264
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):75, 250

               
               
               Conread position:232-632
               
               
               Cow position:chr11:65495161-65495556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:282
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):82, 113

               
               
               Conread position:232-632
               
               
               Cow position:chr11:67600961-67600539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 110

               
               
               Conread position:232-632
               
               
               Cow position:chr11:68909669-68910076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 120

               
               
               Conread position:232-632
               
               
               Cow position:chr11:83043184-83043589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:267
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):75, 231

               
               
               Conread position:232-636
               
               
               Cow position:chr11:27747101-27746688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:280
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):77, 214

               
               
               Conread position:232-645
               
               
               Cow position:chr11:17859970-17860395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 82

               
               
               Conread position:232-645
               
               
               Cow position:chr11:72871080-72870683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:278
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):81, 34

               
               
               Conread position:233-418
               
               
               Cow position:chr11:17559297-17559118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):174, 61

               
               
               Conread position:233-420
               
               
               Cow position:chr11:21830029-21830224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):86, 70

               
               
               Conread position:233-539
               
               
               Cow position:chr11:48660112-48659797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):76, 111

               
               
               Conread position:233-631
               
               
               Cow position:chr11:41272300-41271911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:265
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):176, 66

               
               
               Conread position:233-632
               
               
               Cow position:chr11:258991-259407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:273
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):22, 110

               
               
               Conread position:233-632
               
               
               Cow position:chr11:30192360-30191941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:287
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):101, 42

               
               
               Conread position:235-392
               
               
               Cow position:chr11:33369332-33369166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):86, 115

               
               
               Conread position:235-631
               
               
               Cow position:chr11:8524938-8525341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:270
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):86, 222

               
               
               Conread position:236-449
               
               
               Cow position:chr11:63485111-63484901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):65, 107

               
               
               Conread position:236-515
               
               
               Cow position:chr11:30808418-30808712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):63, 29

               
               
               Conread position:236-560
               
               
               Cow position:chr11:63435701-63435362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:238
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):84, 114

               
               
               Conread position:236-562
               
               
               Cow position:chr11:51729453-51729131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:233
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):214, 57

               
               
               Conread position:236-627
               
               
               Cow position:chr11:36647506-36647137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:273
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):180, 35

               
               
               Conread position:236-628
               
               
               Cow position:chr11:46746815-46746410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:274
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):54, 231

               
               
               Conread position:236-632
               
               
               Cow position:chr11:25620211-25620624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:290
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):74, 110

               
               
               Conread position:236-643
               
               
               Cow position:chr11:6581013-6580571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:295
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):81, 124

               
               
               Conread position:236-645
               
               
               Cow position:chr11:35882070-35881670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:278
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):172, 63

               
               
               Conread position:237-539
               
               
               Cow position:chr11:35980963-35981278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):81, 120

               
               
               Conread position:238-627
               
               
               Cow position:chr11:81405990-81406381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 119

               
               
               Conread position:241-624
               
               
               Cow position:chr11:32199117-32198719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:264
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):77, 107

               
               
               Conread position:242-626
               
               
               Cow position:chr11:14470534-14470144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:261
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):67, 158

               
               
               Conread position:242-629
               
               
               Cow position:chr11:48544609-48544217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:276
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):79, 243

               
               
               Conread position:242-631
               
               
               Cow position:chr11:56821089-56821484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:269
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):166, 51

               
               
               Conread position:242-632
               
               
               Cow position:chr11:43360614-43361025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:281
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):77, 103

               
               
               Conread position:243-631
               
               
               Cow position:chr11:8988058-8988457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 60

               
               
               Conread position:243-632
               
               
               Cow position:chr11:13042976-13043370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 103

               
               
               Conread position:243-632
               
               
               Cow position:chr11:38639271-38638892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:269
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):94, 64

               
               
               Conread position:243-632
               
               
               Cow position:chr11:71868433-71868832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:273
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):51, 14

               
               
               Conread position:243-632
               
               
               Cow position:chr11:77705922-77705537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:262
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):111, 73

               
               
               Conread position:243-645
               
               
               Cow position:chr11:45646425-45646835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:267
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):78, 12

               
               
               Conread position:243-645
               
               
               Cow position:chr11:48474881-48474467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:287
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):47, 112

               
               
               Conread position:246-412
               
               
               Cow position:chr11:2836029-2835855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):75, 113

               
               
               Conread position:246-416
               
               
               Cow position:chr11:27760687-27760507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):72, 25

               
               
               Conread position:246-417
               
               
               Cow position:chr11:62566997-62566832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:246-567
               
               
               Cow position:chr11:28993579-28993894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:227
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):250, 73

               
               
               Conread position:246-612
               
               
               Cow position:chr11:68904919-68905277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:242
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):113, 45

               
               
               Conread position:246-625
               
               
               Cow position:chr11:34144750-34145138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 109

               
               
               Conread position:246-627
               
               
               Cow position:chr11:56676094-56675694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:263
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):57, 113

               
               
               Conread position:246-632
               
               
               Cow position:chr11:18572952-18572575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:257
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):163, 56

               
               
               Conread position:246-632
               
               
               Cow position:chr11:30355215-30354838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:264
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):21, 55

               
               
               Conread position:246-632
               
               
               Cow position:chr11:40818463-40818867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:246-632
               
               
               Cow position:chr11:45631611-45631993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):254, 52

               
               
               Conread position:246-632
               
               
               Cow position:chr11:45872141-45872547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:277
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):80, 114

               
               
               Conread position:246-632
               
               
               Cow position:chr11:55762026-55761650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:269
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):168, 73

               
               
               Conread position:246-632
               
               
               Cow position:chr11:60301808-60302186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 36

               
               
               Conread position:246-643
               
               
               Cow position:chr11:4674275-4674693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:290
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):80, 33

               
               
               Conread position:246-645
               
               
               Cow position:chr11:21843970-21844377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 114

               
               
               Conread position:247-434
               
               
               Cow position:chr11:64409134-64408946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):74, 106

               
               
               Conread position:247-579
               
               
               Cow position:chr11:71009275-71008961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):294, 46

               
               
               Conread position:247-626
               
               
               Cow position:chr11:17661231-17660872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:251
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):290, 19

               
               
               Conread position:247-628
               
               
               Cow position:chr11:69811049-69810679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:257
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):112, 52

               
               
               Conread position:247-632
               
               
               Cow position:chr11:22977714-22978088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:265
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):46, 18

               
               
               Conread position:247-632
               
               
               Cow position:chr11:50951703-50951322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:257
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):167, 46

               
               
               Conread position:247-632
               
               
               Cow position:chr11:73353899-73354282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 94

               
               
               Conread position:248-632
               
               
               Cow position:chr11:34121362-34120969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:263
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):57, 21

               
               
               Conread position:248-632
               
               
               Cow position:chr11:83066659-83066267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:272
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):51, 170

               
               
               Conread position:249-624
               
               
               Cow position:chr11:2907368-2907743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:245
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):78, 14

               
               
               Conread position:249-626
               
               
               Cow position:chr11:36981731-36981345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:264
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):78, 25

               
               
               Conread position:249-631
               
               
               Cow position:chr11:86925797-86926147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:266
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):247, 68

               
               
               Conread position:249-632
               
               
               Cow position:chr11:24602123-24601742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:264
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):114, 15

               
               
               Conread position:250-567
               
               
               Cow position:chr11:31337544-31337218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):73, 48

               
               
               Conread position:250-632
               
               
               Cow position:chr11:3780250-3780653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:266
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):76, 25

               
               
               Conread position:254-392
               
               
               Cow position:chr11:62535065-62534924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:254-586
               
               
               Cow position:chr11:38670851-38670501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:233
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):73, 174

               
               
               Conread position:254-611
               
               
               Cow position:chr11:71492701-71493068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):56, 95

               
               
               Conread position:254-632
               
               
               Cow position:chr11:10992423-10992053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:248
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):61, 157

               
               
               Conread position:260-593
               
               
               Cow position:chr11:17493638-17493292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):70, 28

               
               
               Conread position:260-624
               
               
               Cow position:chr11:87155676-87155294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:262
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):59, 91

               
               
               Conread position:262-447
               
               
               Cow position:chr11:34136394-34136200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):65, 31

               
               
               Conread position:262-627
               
               
               Cow position:chr11:18243793-18244165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:255
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):65, 13

               
               
               Conread position:262-630
               
               
               Cow position:chr11:51756453-51756089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:255
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):43, 28

               
               
               Conread position:262-632
               
               
               Cow position:chr11:11469500-11469862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:244
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):64, 146

               
               
               Conread position:265-632
               
               
               Cow position:chr11:65409021-65409386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:243
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):139, 28

               
               
               Conread position:266-632
               
               
               Cow position:chr11:68206697-68207066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:245
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):55, 197

               
               
               Conread position:271-604
               
               
               Cow position:chr11:63909532-63909853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:220
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):143, 30

               
               
               Conread position:271-631
               
               
               Cow position:chr11:20602362-20602012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:254
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):134, 70

               
               
               Conread position:271-632
               
               
               Cow position:chr11:4662910-4663267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:245
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):42, 71

               
               
               Conread position:271-632
               
               
               Cow position:chr11:36112562-36112189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:256
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):44, 77

               
               
               Conread position:275-632
               
               
               Cow position:chr11:59873063-59872697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:253
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):45, 60

               
               
               Conread position:278-632
               
               
               Cow position:chr11:33414375-33414005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:261
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):43, 73

               
               
               Conread position:281-632
               
               
               Cow position:chr11:54334456-54334106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:246
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):32, 62

               
               
               Conread position:294-632
               
               
               Cow position:chr11:71168476-71168806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):56, 26

               
               
               Conread position:295-578
               
               
               Cow position:chr11:39118873-39118585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:197
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):26, 60

               
               
               Conread position:298-624
               
               
               Cow position:chr11:35684393-35684718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):147, 19

               
               
               Conread position:298-629
               
               
               Cow position:chr11:45897940-45898281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):39, 35

               
               
               Conread position:298-645
               
               
               Cow position:chr11:23232411-23232755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):106, 43

               
               
               Conread position:299-583
               
               
               Cow position:chr11:30955108-30954820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):115, 36

               
               
               Conread position:299-613
               
               
               Cow position:chr11:61958631-61958959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):22, 47

               
               
               Conread position:299-626
               
               
               Cow position:chr11:2092445-2092118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):57, 28

               
               
               Conread position:299-632
               
               
               Cow position:chr11:17831113-17831456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):33, 43

               
               
               Conread position:299-632
               
               
               Cow position:chr11:59702599-59702255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:224
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):12, 22

               
               
               Conread position:299-632
               
               
               Cow position:chr11:63847958-63847621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):25, 47

               
               
               Conread position:304-635
               
               
               Cow position:chr11:38874299-38874633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 41

               
               
               Conread position:305-632
               
               
               Cow position:chr11:30879770-30879451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):19, 37

               
               
               Conread position:309-632
               
               
               Cow position:chr11:44642194-44642514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):113, 28

               
               
               Conread position:309-645
               
               
               Cow position:chr11:56654655-56654305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:243
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):15, 34

               
               
               Conread position:311-631
               
               
               Cow position:chr11:47545226-47544900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):84, 20

               
               
               Conread position:311-632
               
               
               Cow position:chr11:43430360-43430675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:217
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):24, 31

               
               
               Conread position:314-626
               
               
               Cow position:chr11:23586731-23586413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):91, 6

               
               
               Conread position:314-631
               
               
               Cow position:chr11:80530451-80530143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):184, 27

               
               
               Conread position:314-632
               
               
               Cow position:chr11:34963162-34962833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:231
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):73, 27

               
               
               Conread position:314-632
               
               
               Cow position:chr11:62155731-62155398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:236
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):32, 25

               
               
               Conread position:316-632
               
               
               Cow position:chr11:18086257-18086566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):227, 25

               
               
               Conread position:318-632
               
               
               Cow position:chr11:11232366-11232681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):77, 96

               
               
               Conread position:318-632
               
               
               Cow position:chr11:44636664-44636989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):84, 138

               
               
               Conread position:318-645
               
               
               Cow position:chr11:31352462-31352814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:229
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:319-620
               
               
               Cow position:chr11:52983763-52983474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:204
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):87, 22

               
               
               Conread position:319-630
               
               
               Cow position:chr11:1071002-1071318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):84, 152

               
               
               Conread position:319-631
               
               
               Cow position:chr11:29946825-29947154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:240
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):15, 23

               
               
               Conread position:319-632
               
               
               Cow position:chr11:7590277-7589962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):181, 132

               
               
               Conread position:319-632
               
               
               Cow position:chr11:20761931-20761616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):84, 57

               
               
               Conread position:319-632
               
               
               Cow position:chr11:33341056-33341374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):84, 227

               
               
               Conread position:319-632
               
               
               Cow position:chr11:34829697-34830008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):15, 23

               
               
               Conread position:319-632
               
               
               Cow position:chr11:43898227-43897909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):83, 97

               
               
               Conread position:319-632
               
               
               Cow position:chr11:48272289-48271966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:217
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):89, 136

               
               
               Conread position:319-632
               
               
               Cow position:chr11:64090009-64090315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:213
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):64, 16

               
               
               Conread position:319-632
               
               
               Cow position:chr11:69119382-69119071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):95, 88

               
               
               Conread position:319-632
               
               
               Cow position:chr11:73924473-73924787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:211
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):31, 26

               
               
               Conread position:319-632
               
               
               Cow position:chr11:76114731-76114426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:223
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):95, 36

               
               
               Conread position:319-632
               
               
               Cow position:chr11:83230312-83230616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:206
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):89, 137

               
               
               Conread position:319-635
               
               
               Cow position:chr11:44234444-44234123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):5, 23

               
               
               Conread position:320-620
               
               
               Cow position:chr11:42043909-42044207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):264, 13

               
               
               Conread position:320-622
               
               
               Cow position:chr11:36238865-36238563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):93, 71

               
               
               Conread position:320-631
               
               
               Cow position:chr11:40258322-40258629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):10, 69

               
               
               Conread position:320-632
               
               
               Cow position:chr11:377554-377877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):14, 22

               
               
               Conread position:320-632
               
               
               Cow position:chr11:3234163-3233852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):162, 87

               
               
               Conread position:320-632
               
               
               Cow position:chr11:3833276-3833576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:223
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):12, 22

               
               
               Conread position:320-632
               
               
               Cow position:chr11:26483793-26483490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:223
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):83, 31

               
               
               Conread position:320-632
               
               
               Cow position:chr11:35363568-35363266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):94, 21

               
               
               Conread position:321-632
               
               
               Cow position:chr11:56518225-56518541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):177, 12

               
               
               Conread position:321-632
               
               
               Cow position:chr11:60470112-60470408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):219, 20

               
               
               Conread position:321-645
               
               
               Cow position:chr11:23128453-23128781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:219
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):77, 151

               
               
               Conread position:322-588
               
               
               Cow position:chr11:15373923-15373668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):73, 15

               
               
               Conread position:322-593
               
               
               Cow position:chr11:60143218-60143488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):83, 17

               
               
               Conread position:322-632
               
               
               Cow position:chr11:36658737-36659041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):176, 136

               
               
               Conread position:323-531
               
               
               Cow position:chr11:33345529-33345317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):91, 18

               
               
               Conread position:323-585
               
               
               Cow position:chr11:70086416-70086144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):80, 18

               
               
               Conread position:323-607
               
               
               Cow position:chr11:27932365-27932062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):56, 26

               
               
               Conread position:323-629
               
               
               Cow position:chr11:8147815-8148113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):79, 18

               
               
               Conread position:323-629
               
               
               Cow position:chr11:76606756-76606460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):82, 18

               
               
               Conread position:323-630
               
               
               Cow position:chr11:80761294-80761606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):82, 20

               
               
               Conread position:323-631
               
               
               Cow position:chr11:30925238-30924925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):84, 18

               
               
               Conread position:323-631
               
               
               Cow position:chr11:36799224-36799526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):95, 14

               
               
               Conread position:323-632
               
               
               Cow position:chr11:1362384-1362709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):85, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr11:5789816-5790140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):85, 26

               
               
               Conread position:323-632
               
               
               Cow position:chr11:23137970-23138290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 137

               
               
               Conread position:323-632
               
               
               Cow position:chr11:33311061-33310743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):47, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr11:34032115-34032426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:230
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):15, 62

               
               
               Conread position:323-632
               
               
               Cow position:chr11:36849000-36848703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):173, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr11:36987033-36986733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:222
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):80, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr11:40792621-40792922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):82, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr11:58400332-58400035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):268, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr11:61454433-61454763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):99, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr11:63482346-63482654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:218
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):147, 18

               
               
               Conread position:324-632
               
               
               Cow position:chr11:32436416-32436100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:231
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):90, 17

               
               
               Conread position:324-632
               
               
               Cow position:chr11:64638443-64638752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):79, 17

               
               
               Conread position:324-633
               
               
               Cow position:chr11:9221648-9221955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):9, 18

               
               
               Conread position:328-632
               
               
               Cow position:chr11:39809068-39808760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):104, 39

               
               
               Conread position:334-632
               
               
               Cow position:chr11:27939555-27939258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):72, 7

               
               
               Conread position:338-632
               
               
               Cow position:chr11:16261955-16262261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:204
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):70, 125

               
               
               Conread position:340-630
               
               
               Cow position:chr11:62880564-62880853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:191
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):203, 48

               
               
               Conread position:343-622
               
               
               Cow position:chr11:61858838-61859118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):63, 109

               
               
               Conread position:344-637
               
               
               Cow position:chr11:18340978-18341271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:223
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):66, 7

               
               
               Conread position:349-577
               
               
               Cow position:chr11:41175890-41176122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):60, 113

               
               
               Conread position:349-632
               
               
               Cow position:chr11:32378246-32377959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):83, 39

               
               
               Conread position:351-629
               
               
               Cow position:chr11:41426958-41426688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):63, 58

               
               
               Conread position:351-632
               
               
               Cow position:chr11:6835590-6835300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:192
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):54, 170

               
               
               Conread position:351-632
               
               
               Cow position:chr11:19755707-19755428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):151, 56

               
               
               Conread position:351-632
               
               
               Cow position:chr11:33753852-33754128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):56, 62

               
               
               Conread position:351-645
               
               
               Cow position:chr11:33349644-33349943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):63, 56

               
               
               Conread position:352-632
               
               
               Cow position:chr11:4323414-4323138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):62, 55

               
               
               Conread position:352-632
               
               
               Cow position:chr11:10620272-10620554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):63, 120

               
               
               Conread position:352-632
               
               
               Cow position:chr11:80787851-80788139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):78, 70

               
               
               Conread position:352-633
               
               
               Cow position:chr11:70273362-70273071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):56, 107

               
               
               Conread position:355-611
               
               
               Cow position:chr11:72375630-72375896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):59, 52

               
               
               Conread position:355-624
               
               
               Cow position:chr11:77766542-77766822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:202
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):52, 147

               
               
               Conread position:356-628
               
               
               Cow position:chr11:38794591-38794329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):142, 64

               
               
               Conread position:356-632
               
               
               Cow position:chr11:8840696-8840969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):47, 100

               
               
               Conread position:356-633
               
               
               Cow position:chr11:24585227-24584951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):58, 11

               
               
               Conread position:356-645
               
               
               Cow position:chr11:30120610-30120903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:209
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):58, 220

               
               
               Conread position:358-632
               
               
               Cow position:chr11:58990547-58990282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):87, 30

               
               
               Conread position:361-632
               
               
               Cow position:chr11:8827826-8827551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):47, 141

               
               
               Conread position:361-632
               
               
               Cow position:chr11:19788169-19787917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):47, 23

               
               
               Conread position:362-624
               
               
               Cow position:chr11:5031729-5031998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):5, 36

               
               
               Conread position:362-645
               
               
               Cow position:chr11:24937712-24937420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):5, 96

               
               
               Conread position:363-632
               
               
               Cow position:chr11:81174929-81174661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):23, 12

               
               
               Conread position:365-625
               
               
               Cow position:chr11:2811687-2811945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:176
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):40, 92

               
               
               Conread position:366-625
               
               
               Cow position:chr11:16226742-16226484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:186
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):43, 93

               
               
               Conread position:366-627
               
               
               Cow position:chr11:36309371-36309633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):112, 65

               
               
               Conread position:366-632
               
               
               Cow position:chr11:48697486-48697219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:196
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):41, 47

               
               
               Conread position:369-597
               
               
               Cow position:chr11:48041994-48042232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):35, 90

               
               
               Conread position:369-632
               
               
               Cow position:chr11:14094381-14094653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):38, 180

               
               
               Conread position:372-631
               
               
               Cow position:chr11:35276335-35276073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:172
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):205, 170

               
               
               Conread position:372-632
               
               
               Cow position:chr11:10076804-10076547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):36, 90

               
               
               Conread position:373-645
               
               
               Cow position:chr11:8339371-8339646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):35, 90

               
               
               Conread position:379-623
               
               
               Cow position:chr11:82107866-82108107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):35, 82

               
               
               Conread position:382-632
               
               
               Cow position:chr11:2309896-2309645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):7, 72

               
               
               Conread position:382-632
               
               
               Cow position:chr11:18591411-18591662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):13, 23

               
               
               Conread position:382-632
               
               
               Cow position:chr11:40485909-40486162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:175
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):36, 27

               
               
               Conread position:389-632
               
               
               Cow position:chr11:51043909-51044165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):19, 74

               
               
               Conread position:394-632
               
               
               Cow position:chr11:9837087-9837325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):27, 65

               
               
               Conread position:394-632
               
               
               Cow position:chr11:83196511-83196270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:178
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):13, 60

               
               
               Conread position:402-631
               
               
               Cow position:chr11:71846346-71846576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):98, 5

               
               
               Conread position:402-643
               
               
               Cow position:chr11:2514590-2514832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):12, 58

               
               
               Conread position:405-631
               
               
               Cow position:chr11:12555407-12555648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):47, 15

               
               
               Conread position:411-624
               
               
               Cow position:chr11:21830355-21830573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:411-630
               
               
               Cow position:chr11:17112639-17112853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):132, 35

               
               
               Conread position:411-631
               
               
               Cow position:chr11:63516820-63516596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):87, 44

               
               
               Conread position:411-632
               
               
               Cow position:chr11:8105778-8105554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):32, 69

               
               
               Conread position:411-632
               
               
               Cow position:chr11:47586357-47586574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):83, 40

               
               
               Conread position:411-632
               
               
               Cow position:chr11:53130806-53130583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):60, 36

               
               
               Conread position:411-632
               
               
               Cow position:chr11:62979483-62979249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):87, 44

               
               
               Conread position:411-632
               
               
               Cow position:chr11:81614647-81614861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):123, 40

               
               
               Conread position:412-632
               
               
               Cow position:chr11:65857852-65857629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):77, 42

               
               
               Conread position:412-645
               
               
               Cow position:chr11:71455784-71455546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):86, 20

               
               
               Conread position:426-632
               
               
               Cow position:chr11:952247-952040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):160, 22

               
               
               Conread position:440-645
               
               
               Cow position:chr11:74929751-74929538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:449-633
               
               
               Cow position:chr11:57769402-57769580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):17, 94

               
               
               Conread position:456-632
               
               
               Cow position:chr11:68570715-68570900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):36, 162

               
               
               Conread position:458-628
               
               
               Cow position:chr11:49106006-49105833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):40, 112

               
               
               Conread position:458-631
               
               
               Cow position:chr11:41577065-41577236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):40, 135

               
               
               Conread position:458-632
               
               
               Cow position:chr11:21819496-21819673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:458-632
               
               
               Cow position:chr11:32609951-32609763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:458-632
               
               
               Cow position:chr11:48901132-48901306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:458-632
               
               
               Cow position:chr11:75748382-75748206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:458-633
               
               
               Cow position:chr11:57111358-57111538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):40, 86

               
               
               Conread position:460-627
               
               
               Cow position:chr11:37100408-37100583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:460-632
               
               
               Cow position:chr11:81066638-81066810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):43, 109

               
               
               Conread position:461-632
               
               
               Cow position:chr11:24967401-24967232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):9, 22

               
               
               Conread position:462-631
               
               
               Cow position:chr11:77241315-77241146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):38, 94

               
               
               Conread position:463-626
               
               
               Cow position:chr11:40860765-40860939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:463-632
               
               
               Cow position:chr11:6329192-6329017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):37, 5

               
               
               Conread position:470-624
               
               
               Cow position:chr11:62808712-62808869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:470-630
               
               
               Cow position:chr11:77207983-77207822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:470-632
               
               
               Cow position:chr11:2050520-2050351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:470-632
               
               
               Cow position:chr11:4384558-4384396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):28, 92

               
               
               Conread position:470-632
               
               
               Cow position:chr11:31900983-31900820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):41, 54

               
               
               Conread position:470-632
               
               
               Cow position:chr11:43914150-43913993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):28, 95

               
               
               Conread position:470-632
               
               
               Cow position:chr11:84890813-84890981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:470-633
               
               
               Cow position:chr11:38194091-38193922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:471-632
               
               
               Cow position:chr11:41239335-41239503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:471-632
               
               
               Cow position:chr11:41438284-41438453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:471-645
               
               
               Cow position:chr11:62965616-62965795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:472-632
               
               
               Cow position:chr11:27462457-27462613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):73, 103

               
               
               Conread position:476-631
               
               
               Cow position:chr11:7315196-7315354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:477-632
               
               
               Cow position:chr11:2281361-2281518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):71, 91

               
               
               Conread position:486-635
               
               
               Cow position:chr11:81042477-81042327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):51, 89

               
               
               Conread position:487-632
               
               
               Cow position:chr11:22103674-22103526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:490-632
               
               
               Cow position:chr11:55117397-55117244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:491-628
               
               
               Cow position:chr11:71309612-71309753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:492-643
               
               
               Cow position:chr11:37118402-37118243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:493-628
               
               
               Cow position:chr11:63520684-63520548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:493-632
               
               
               Cow position:chr11:84775020-84774887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):50, 24

               
               
               Conread position:493-633
               
               
               Cow position:chr11:58600776-58600631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:494-650
               
               
               Cow position:chr11:11533989-11534150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):23, 73

               
               
               Conread position:495-624
               
               
               Cow position:chr11:70709643-70709775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:106
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):47, 24

               
               
               Conread position:495-628
               
               
               Cow position:chr11:30934334-30934200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:495-629
               
               
               Cow position:chr11:17192372-17192507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:105
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:495-630
               
               
               Cow position:chr11:65430969-65430835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:495-630
               
               
               Cow position:chr11:84924184-84924325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:495-631
               
               
               Cow position:chr11:35874082-35874213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:109
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:495-631
               
               
               Cow position:chr11:50778283-50778143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:109
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:495-631
               
               
               Cow position:chr11:73478529-73478393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr11:1485445-1485589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr11:1668586-1668449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):19, 35

               
               
               Conread position:495-632
               
               
               Cow position:chr11:4412105-4412246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr11:16251337-16251477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):91, 75

               
               
               Conread position:495-632
               
               
               Cow position:chr11:18210436-18210577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr11:18388952-18389091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:109
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):71, 90

               
               
               Conread position:495-632
               
               
               Cow position:chr11:19508205-19508069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr11:25165352-25165215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr11:31885428-31885292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):34, 71

               
               
               Conread position:495-632
               
               
               Cow position:chr11:47165230-47165366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr11:51144625-51144489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):76, 22

               
               
               Conread position:495-632
               
               
               Cow position:chr11:62376526-62376666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):88, 73

               
               
               Conread position:495-633
               
               
               Cow position:chr11:34413008-34412867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:495-645
               
               
               Cow position:chr11:42793063-42793217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:496-632
               
               
               Cow position:chr11:41983544-41983675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:108
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:497-632
               
               
               Cow position:chr11:54134342-54134474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:497-632
               
               
               Cow position:chr11:75355518-75355381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:500-630
               
               
               Cow position:chr11:3282956-3282825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:103
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:503-631
               
               
               Cow position:chr11:6639412-6639283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:102
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):40, 73

               
               
               Conread position:503-632
               
               
               Cow position:chr11:10294493-10294367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:503-632
               
               
               Cow position:chr11:15608389-15608522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:504-632
               
               
               Cow position:chr11:26277190-26277319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):82, 59

               
               
               Conread position:505-624
               
               
               Cow position:chr11:81931184-81931302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:97
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):38, 51

               
               
               Conread position:505-627
               
               
               Cow position:chr11:46451513-46451393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:99
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):37, 86

               
               
               Conread position:505-630
               
               
               Cow position:chr11:37068409-37068530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):21, 60

               
               
               Conread position:505-632
               
               
               Cow position:chr11:17968677-17968804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:96
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:505-632
               
               
               Cow position:chr11:39057534-39057410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:104
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:505-632
               
               
               Cow position:chr11:58102871-58103003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:505-645
               
               
               Cow position:chr11:16795252-16795393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:115
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):79, 37

               
               
               Conread position:508-632
               
               
               Cow position:chr11:75510334-75510462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:99
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:509-617
               
               
               Cow position:chr11:83033802-83033914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:94
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:509-632
               
               
               Cow position:chr11:40608823-40608949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:102
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):22, 57

               
               
               Conread position:515-624
               
               
               Cow position:chr11:375057-374948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:90
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:518-632
               
               
               Cow position:chr11:9234517-9234399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:96
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:521-630
               
               
               Cow position:chr11:17036665-17036779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:93
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:522-633
               
               
               Cow position:chr11:64405451-64405566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:184-404
               
               
               Cow position:chr12:25528352-25528577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):22, 77

               
               
               Conread position:197-632
               
               
               Cow position:chr12:6241527-6241061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 373

               
               
               Conread position:197-632
               
               
               Cow position:chr12:30745912-30745465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:294
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):116, 142

               
               
               Conread position:201-537
               
               
               Cow position:chr12:24639821-24639501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):37, 123

               
               
               Conread position:203-645
               
               
               Cow position:chr12:42967189-42966739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 94

               
               
               Conread position:207-445
               
               
               Cow position:chr12:22291303-22291548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):100, 147

               
               
               Conread position:207-562
               
               
               Cow position:chr12:12636996-12637366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):21, 261

               
               
               Conread position:208-593
               
               
               Cow position:chr12:13643423-13643027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:261
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):23, 155

               
               
               Conread position:209-529
               
               
               Cow position:chr12:3371668-3372004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:225
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):27, 143

               
               
               Conread position:209-539
               
               
               Cow position:chr12:46714558-46714218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:242
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):90, 19

               
               
               Conread position:212-404
               
               
               Cow position:chr12:3057270-3057070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):107, 135

               
               
               Conread position:213-405
               
               
               Cow position:chr12:8143636-8143829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):130, 19

               
               
               Conread position:213-428
               
               
               Cow position:chr12:35469270-35469492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):23, 131

               
               
               Conread position:213-632
               
               
               Cow position:chr12:26868638-26869047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:307
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):108, 18

               
               
               Conread position:214-470
               
               
               Cow position:chr12:15496075-15495811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):88, 18

               
               
               Conread position:214-488
               
               
               Cow position:chr12:42286143-42285867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):93, 127

               
               
               Conread position:214-561
               
               
               Cow position:chr12:23917021-23916665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):8, 133

               
               
               Conread position:214-602
               
               
               Cow position:chr12:15205010-15204612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:268
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):193, 92

               
               
               Conread position:214-632
               
               
               Cow position:chr12:3056298-3055889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:286
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):17, 70

               
               
               Conread position:214-632
               
               
               Cow position:chr12:15429416-15429848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:280
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):23, 51

               
               
               Conread position:215-395
               
               
               Cow position:chr12:14396614-14396793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):22, 12

               
               
               Conread position:215-395
               
               
               Cow position:chr12:18413333-18413512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):132, 50

               
               
               Conread position:215-405
               
               
               Cow position:chr12:6958397-6958201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):106, 132

               
               
               Conread position:215-405
               
               
               Cow position:chr12:23714849-23714657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):105, 17

               
               
               Conread position:215-414
               
               
               Cow position:chr12:31602644-31602849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):101, 28

               
               
               Conread position:215-420
               
               
               Cow position:chr12:23106118-23105902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):23, 135

               
               
               Conread position:215-440
               
               
               Cow position:chr12:25823049-25823284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):23, 50

               
               
               Conread position:215-445
               
               
               Cow position:chr12:12530900-12531138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:166
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):86, 16

               
               
               Conread position:215-624
               
               
               Cow position:chr12:1005672-1006072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:266
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):235, 113

               
               
               Conread position:215-629
               
               
               Cow position:chr12:44602684-44602258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:283
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):19, 13

               
               
               Conread position:215-632
               
               
               Cow position:chr12:5635271-5635696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 137

               
               
               Conread position:215-632
               
               
               Cow position:chr12:27802879-27803298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 103

               
               
               Conread position:216-327
               
               
               Cow position:chr12:39738120-39738231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:89
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:216-333
               
               
               Cow position:chr12:31711705-31711822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:93
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:216-366
               
               
               Cow position:chr12:35217856-35218003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:216-389
               
               
               Cow position:chr12:41684682-41684505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):21, 138

               
               
               Conread position:216-405
               
               
               Cow position:chr12:7884502-7884699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:216-405
               
               
               Cow position:chr12:22048101-22047904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):103, 132

               
               
               Conread position:216-405
               
               
               Cow position:chr12:38343728-38343532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):101, 134

               
               
               Conread position:216-418
               
               
               Cow position:chr12:21780344-21780129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):23, 136

               
               
               Conread position:216-419
               
               
               Cow position:chr12:25343961-25343747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):102, 144

               
               
               Conread position:216-425
               
               
               Cow position:chr12:45782402-45782190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):21, 130

               
               
               Conread position:216-438
               
               
               Cow position:chr12:6206513-6206278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):15, 146

               
               
               Conread position:216-451
               
               
               Cow position:chr12:11547218-11546974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):100, 142

               
               
               Conread position:216-452
               
               
               Cow position:chr12:6187932-6188183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):99, 145

               
               
               Conread position:216-456
               
               
               Cow position:chr12:18563340-18563098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):21, 138

               
               
               Conread position:216-487
               
               
               Cow position:chr12:4954998-4954729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:192
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):97, 124

               
               
               Conread position:216-488
               
               
               Cow position:chr12:35240928-35241204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):76, 15

               
               
               Conread position:216-517
               
               
               Cow position:chr12:26749774-26750095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):105, 16

               
               
               Conread position:216-624
               
               
               Cow position:chr12:31530475-31530044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:287
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):105, 144

               
               
               Conread position:216-630
               
               
               Cow position:chr12:9482124-9482545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 203

               
               
               Conread position:216-631
               
               
               Cow position:chr12:25561543-25561123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 171

               
               
               Conread position:216-631
               
               
               Cow position:chr12:26783054-26782634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:294
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):15, 146

               
               
               Conread position:216-632
               
               
               Cow position:chr12:15938096-15938515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 12

               
               
               Conread position:216-632
               
               
               Cow position:chr12:18123843-18123438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:280
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):105, 210

               
               
               Conread position:216-633
               
               
               Cow position:chr12:40910110-40910540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 15

               
               
               Conread position:217-326
               
               
               Cow position:chr12:27663814-27663923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:91
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:217-387
               
               
               Cow position:chr12:38031965-38032140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):14, 129

               
               
               Conread position:217-397
               
               
               Cow position:chr12:1089214-1089403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):111, 131

               
               
               Conread position:217-405
               
               
               Cow position:chr12:2964222-2964030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):101, 183

               
               
               Conread position:217-406
               
               
               Cow position:chr12:15103453-15103254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):109, 143

               
               
               Conread position:217-406
               
               
               Cow position:chr12:28699604-28699799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):96, 140

               
               
               Conread position:217-416
               
               
               Cow position:chr12:17928903-17929104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):14, 106

               
               
               Conread position:217-416
               
               
               Cow position:chr12:26357195-26357402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):76, 12

               
               
               Conread position:217-450
               
               
               Cow position:chr12:43974469-43974226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:177
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):19, 142

               
               
               Conread position:217-516
               
               
               Cow position:chr12:25193219-25192921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):13, 106

               
               
               Conread position:217-535
               
               
               Cow position:chr12:10942471-10942135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):21, 147

               
               
               Conread position:217-561
               
               
               Cow position:chr12:4720122-4719768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:249
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):14, 129

               
               
               Conread position:217-631
               
               
               Cow position:chr12:44622535-44622112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:278
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):53, 15

               
               
               Conread position:217-632
               
               
               Cow position:chr12:40110527-40110141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:271
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):324, 15

               
               
               Conread position:217-632
               
               
               Cow position:chr12:42282663-42283085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 136

               
               
               Conread position:217-645
               
               
               Cow position:chr12:22882226-22881790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:297
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):82, 13

               
               
               Conread position:218-385
               
               
               Cow position:chr12:40043183-40043013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:121
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):95, 136

               
               
               Conread position:218-389
               
               
               Cow position:chr12:11272650-11272828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):16, 130

               
               
               Conread position:218-405
               
               
               Cow position:chr12:7902631-7902817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):94, 14

               
               
               Conread position:218-405
               
               
               Cow position:chr12:36261869-36261671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:218-417
               
               
               Cow position:chr12:3039896-3039695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):133, 45

               
               
               Conread position:218-418
               
               
               Cow position:chr12:41989506-41989719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):100, 143

               
               
               Conread position:218-421
               
               
               Cow position:chr12:29057565-29057353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):89, 132

               
               
               Conread position:218-539
               
               
               Cow position:chr12:13988551-13988216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:221
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):21, 145

               
               
               Conread position:218-539
               
               
               Cow position:chr12:23446892-23446567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:227
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):12, 62

               
               
               Conread position:218-544
               
               
               Cow position:chr12:7539613-7539951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:219
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):127, 13

               
               
               Conread position:218-611
               
               
               Cow position:chr12:25280325-25280719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:273
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):26, 56

               
               
               Conread position:218-617
               
               
               Cow position:chr12:29899246-29899670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:293
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):99, 10

               
               
               Conread position:218-632
               
               
               Cow position:chr12:17624661-17625066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:279
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):70, 102

               
               
               Conread position:218-632
               
               
               Cow position:chr12:19697568-19697167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:285
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):103, 18

               
               
               Conread position:218-632
               
               
               Cow position:chr12:24023639-24024039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):196, 13

               
               
               Conread position:218-633
               
               
               Cow position:chr12:3076445-3076872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:285
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):42, 139

               
               
               Conread position:219-419
               
               
               Cow position:chr12:14223159-14222949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):12, 141

               
               
               Conread position:219-420
               
               
               Cow position:chr12:37480664-37480870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):135, 13

               
               
               Conread position:219-619
               
               
               Cow position:chr12:4162199-4162606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:268
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):131, 72

               
               
               Conread position:219-624
               
               
               Cow position:chr12:15358517-15358088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:291
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):85, 51

               
               
               Conread position:219-624
               
               
               Cow position:chr12:36020309-36020716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:265
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):97, 47

               
               
               Conread position:219-626
               
               
               Cow position:chr12:39465737-39465336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:272
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):191, 10

               
               
               Conread position:220-584
               
               
               Cow position:chr12:17879133-17879502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):83, 10

               
               
               Conread position:220-631
               
               
               Cow position:chr12:35368819-35368396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 78

               
               
               Conread position:220-631
               
               
               Cow position:chr12:35779746-35780174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:287
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):17, 187

               
               
               Conread position:220-632
               
               
               Cow position:chr12:20479171-20479562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:279
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):89, 46

               
               
               Conread position:221-418
               
               
               Cow position:chr12:43619454-43619251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):98, 11

               
               
               Conread position:221-539
               
               
               Cow position:chr12:12301100-12300766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):18, 231

               
               
               Conread position:221-632
               
               
               Cow position:chr12:10895382-10895796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:289
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):98, 34

               
               
               Conread position:221-632
               
               
               Cow position:chr12:17031780-17031373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:276
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):26, 11

               
               
               Conread position:221-632
               
               
               Cow position:chr12:19502240-19502668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:285
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):14, 258

               
               
               Conread position:222-421
               
               
               Cow position:chr12:24396992-24397197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):15, 43

               
               
               Conread position:222-536
               
               
               Cow position:chr12:26217656-26217978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):77, 49

               
               
               Conread position:222-632
               
               
               Cow position:chr12:19714890-19715276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:273
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):190, 37

               
               
               Conread position:223-635
               
               
               Cow position:chr12:27055754-27055354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:272
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):185, 35

               
               
               Conread position:226-414
               
               
               Cow position:chr12:6666728-6666545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:226-421
               
               
               Cow position:chr12:31841737-31841535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):71, 122

               
               
               Conread position:228-326
               
               
               Cow position:chr12:37718603-37718701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:99
               
               
               Alignm identity:83
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:228-326
               
               
               Cow position:chr12:37742466-37742368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:99
               
               
               Alignm identity:82
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:228-590
               
               
               Cow position:chr12:25989049-25989398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):10, 37

               
               
               Conread position:228-620
               
               
               Cow position:chr12:18103451-18103830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:261
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):8, 124

               
               
               Conread position:228-630
               
               
               Cow position:chr12:41084211-41083819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:266
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):10, 36

               
               
               Conread position:228-631
               
               
               Cow position:chr12:21922605-21922188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:289
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):8, 76

               
               
               Conread position:228-631
               
               
               Cow position:chr12:35770858-35771279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:300
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):10, 42

               
               
               Conread position:228-632
               
               
               Cow position:chr12:8943050-8943468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 129

               
               
               Conread position:228-632
               
               
               Cow position:chr12:19508398-19508820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:277
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):8, 126

               
               
               Conread position:228-632
               
               
               Cow position:chr12:31228748-31228326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:287
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):92, 248

               
               
               Conread position:230-406
               
               
               Cow position:chr12:34878001-34877811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:230-421
               
               
               Cow position:chr12:34532909-34533110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):86, 128

               
               
               Conread position:230-635
               
               
               Cow position:chr12:27563216-27563635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 39

               
               
               Conread position:232-414
               
               
               Cow position:chr12:44822443-44822265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):158, 67

               
               
               Conread position:232-443
               
               
               Cow position:chr12:10827947-10827733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):87, 125

               
               
               Conread position:232-539
               
               
               Cow position:chr12:19258437-19258125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):75, 31

               
               
               Conread position:232-547
               
               
               Cow position:chr12:36790652-36790974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):89, 112

               
               
               Conread position:232-550
               
               
               Cow position:chr12:15050464-15050784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:225
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):94, 31

               
               
               Conread position:232-562
               
               
               Cow position:chr12:38774084-38774418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:235
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):81, 113

               
               
               Conread position:232-584
               
               
               Cow position:chr12:4769080-4768726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:231
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):92, 109

               
               
               Conread position:232-604
               
               
               Cow position:chr12:36544483-36544869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:257
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):7, 105

               
               
               Conread position:232-605
               
               
               Cow position:chr12:31948273-31947902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 63

               
               
               Conread position:232-611
               
               
               Cow position:chr12:30210631-30210252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:267
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):171, 72

               
               
               Conread position:232-620
               
               
               Cow position:chr12:5459411-5459027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:276
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):95, 14

               
               
               Conread position:232-621
               
               
               Cow position:chr12:1889419-1889817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:251
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):69, 46

               
               
               Conread position:232-623
               
               
               Cow position:chr12:34333277-34332867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:288
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):49, 130

               
               
               Conread position:232-624
               
               
               Cow position:chr12:30578296-30578699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:261
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):89, 27

               
               
               Conread position:232-626
               
               
               Cow position:chr12:17882016-17881624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 63

               
               
               Conread position:232-631
               
               
               Cow position:chr12:18518833-18518424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:273
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):90, 289

               
               
               Conread position:232-631
               
               
               Cow position:chr12:20776768-20777178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 111

               
               
               Conread position:232-631
               
               
               Cow position:chr12:30170813-30170420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 76

               
               
               Conread position:232-632
               
               
               Cow position:chr12:5714779-5714380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 61

               
               
               Conread position:232-632
               
               
               Cow position:chr12:6410575-6410976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 39

               
               
               Conread position:232-632
               
               
               Cow position:chr12:24559501-24559105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:264
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):182, 66

               
               
               Conread position:232-632
               
               
               Cow position:chr12:30919595-30919184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:285
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):88, 125

               
               
               Conread position:232-632
               
               
               Cow position:chr12:34465857-34466250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:272
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):171, 70

               
               
               Conread position:232-632
               
               
               Cow position:chr12:35310521-35310921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 128

               
               
               Conread position:232-645
               
               
               Cow position:chr12:9229355-9229743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:276
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:232-645
               
               
               Cow position:chr12:36314001-36313604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:279
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):52, 39

               
               
               Conread position:233-631
               
               
               Cow position:chr12:18577987-18577602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:268
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):124, 80

               
               
               Conread position:233-632
               
               
               Cow position:chr12:30806013-30805610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:278
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):14, 57

               
               
               Conread position:234-412
               
               
               Cow position:chr12:20355382-20355191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):64, 121

               
               
               Conread position:234-420
               
               
               Cow position:chr12:43855049-43854859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):87, 80

               
               
               Conread position:234-632
               
               
               Cow position:chr12:21393869-21393457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:297
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):94, 61

               
               
               Conread position:235-632
               
               
               Cow position:chr12:36500789-36501200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 120

               
               
               Conread position:235-632
               
               
               Cow position:chr12:37728287-37727899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:268
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):173, 67

               
               
               Conread position:235-633
               
               
               Cow position:chr12:37732638-37733026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:267
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):155, 67

               
               
               Conread position:236-420
               
               
               Cow position:chr12:26147011-26147203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):74, 122

               
               
               Conread position:236-523
               
               
               Cow position:chr12:37008553-37008843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):85, 78

               
               
               Conread position:236-561
               
               
               Cow position:chr12:15414714-15415050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:222
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):76, 16

               
               
               Conread position:236-575
               
               
               Cow position:chr12:11587926-11587576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:249
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):73, 30

               
               
               Conread position:236-593
               
               
               Cow position:chr12:33851513-33851150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:246
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):79, 181

               
               
               Conread position:236-630
               
               
               Cow position:chr12:34007456-34007053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:262
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):32, 56

               
               
               Conread position:236-632
               
               
               Cow position:chr12:11057023-11056628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:265
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):79, 29

               
               
               Conread position:236-632
               
               
               Cow position:chr12:18420764-18421175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:280
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):33, 118

               
               
               Conread position:236-632
               
               
               Cow position:chr12:32169703-32169288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:269
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):64, 43

               
               
               Conread position:236-632
               
               
               Cow position:chr12:42879856-42879458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:265
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):70, 245

               
               
               Conread position:237-635
               
               
               Cow position:chr12:22515582-22515991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:277
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):70, 108

               
               
               Conread position:240-632
               
               
               Cow position:chr12:9143537-9143145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:264
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):72, 23

               
               
               Conread position:242-452
               
               
               Cow position:chr12:23939370-23939153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):101, 57

               
               
               Conread position:242-632
               
               
               Cow position:chr12:12331377-12331749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:258
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):166, 57

               
               
               Conread position:242-632
               
               
               Cow position:chr12:48415369-48415761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:267
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):71, 29

               
               
               Conread position:243-420
               
               
               Cow position:chr12:15389220-15389036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):66, 101

               
               
               Conread position:243-623
               
               
               Cow position:chr12:9914931-9914552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:262
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):81, 56

               
               
               Conread position:244-630
               
               
               Cow position:chr12:24211549-24211170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:239
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):61, 78

               
               
               Conread position:245-537
               
               
               Cow position:chr12:31517035-31517320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):153, 54

               
               
               Conread position:246-429
               
               
               Cow position:chr12:38552340-38552154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):75, 100

               
               
               Conread position:246-591
               
               
               Cow position:chr12:19400669-19401011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:235
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):67, 110

               
               
               Conread position:246-593
               
               
               Cow position:chr12:30194840-30194500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:229
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):211, 17

               
               
               Conread position:246-628
               
               
               Cow position:chr12:42180981-42181385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 102

               
               
               Conread position:246-630
               
               
               Cow position:chr12:23574917-23574524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 109

               
               
               Conread position:246-630
               
               
               Cow position:chr12:31532262-31532650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:270
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):55, 17

               
               
               Conread position:247-632
               
               
               Cow position:chr12:19866390-19865994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:273
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):43, 24

               
               
               Conread position:247-645
               
               
               Cow position:chr12:37993576-37993987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:278
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):51, 30

               
               
               Conread position:248-419
               
               
               Cow position:chr12:41220868-41221041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):73, 104

               
               
               Conread position:248-632
               
               
               Cow position:chr12:15122470-15122088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:259
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):72, 330

               
               
               Conread position:248-632
               
               
               Cow position:chr12:17001386-17001010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:256
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):144, 45

               
               
               Conread position:248-632
               
               
               Cow position:chr12:27562692-27563085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:251
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):93, 111

               
               
               Conread position:250-637
               
               
               Cow position:chr12:41091678-41091277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:259
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):77, 112

               
               
               Conread position:251-628
               
               
               Cow position:chr12:28559425-28559051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):199, 13

               
               
               Conread position:254-632
               
               
               Cow position:chr12:5631745-5632122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:252
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):55, 28

               
               
               Conread position:254-645
               
               
               Cow position:chr12:4866953-4866553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:269
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):61, 91

               
               
               Conread position:255-612
               
               
               Cow position:chr12:28749082-28748706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:254
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):71, 138

               
               
               Conread position:256-632
               
               
               Cow position:chr12:19154480-19154859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:259
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):10, 97

               
               
               Conread position:258-631
               
               
               Cow position:chr12:42254804-42254411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:270
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):63, 91

               
               
               Conread position:258-632
               
               
               Cow position:chr12:37771001-37770627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):63, 19

               
               
               Conread position:267-632
               
               
               Cow position:chr12:30661823-30662197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 80

               
               
               Conread position:268-631
               
               
               Cow position:chr12:33323369-33323746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:254
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):35, 82

               
               
               Conread position:271-632
               
               
               Cow position:chr12:41159712-41159348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:257
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):28, 79

               
               
               Conread position:285-632
               
               
               Cow position:chr12:6210058-6210405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:242
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):32, 43

               
               
               Conread position:291-632
               
               
               Cow position:chr12:44595713-44596062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:241
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):34, 21

               
               
               Conread position:294-632
               
               
               Cow position:chr12:18765883-18766229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):114, 15

               
               
               Conread position:297-597
               
               
               Cow position:chr12:22540298-22539988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):16, 38

               
               
               Conread position:298-632
               
               
               Cow position:chr12:17774884-17774557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):23, 45

               
               
               Conread position:299-631
               
               
               Cow position:chr12:42698153-42698470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):24, 42

               
               
               Conread position:299-632
               
               
               Cow position:chr12:31959964-31959646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:212
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:300-632
               
               
               Cow position:chr12:30753805-30753474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):34, 20

               
               
               Conread position:303-633
               
               
               Cow position:chr12:32715129-32714793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):17, 82

               
               
               Conread position:304-609
               
               
               Cow position:chr12:25452365-25452667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:214
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):16, 29

               
               
               Conread position:309-630
               
               
               Cow position:chr12:31429494-31429807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:215
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):106, 32

               
               
               Conread position:309-632
               
               
               Cow position:chr12:2711576-2711244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):24, 33

               
               
               Conread position:309-632
               
               
               Cow position:chr12:19869540-19869223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:216
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):21, 39

               
               
               Conread position:310-631
               
               
               Cow position:chr12:29995388-29995708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 31

               
               
               Conread position:312-632
               
               
               Cow position:chr12:12304455-12304151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:315-615
               
               
               Cow position:chr12:12578960-12579256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:209
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):19, 36

               
               
               Conread position:319-612
               
               
               Cow position:chr12:27037382-27037677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):89, 138

               
               
               Conread position:319-628
               
               
               Cow position:chr12:29770511-29770817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):179, 74

               
               
               Conread position:319-632
               
               
               Cow position:chr12:18020925-18020605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):64, 124

               
               
               Conread position:320-630
               
               
               Cow position:chr12:5906123-5905811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):82, 137

               
               
               Conread position:320-632
               
               
               Cow position:chr12:47804223-47803907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):14, 24

               
               
               Conread position:321-632
               
               
               Cow position:chr12:41581175-41580864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:216
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):144, 22

               
               
               Conread position:321-632
               
               
               Cow position:chr12:44517673-44517983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):87, 20

               
               
               Conread position:321-632
               
               
               Cow position:chr12:47929265-47928967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):94, 20

               
               
               Conread position:322-632
               
               
               Cow position:chr12:26222926-26223234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:214
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:322-645
               
               
               Cow position:chr12:6720393-6720059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):81, 162

               
               
               Conread position:323-593
               
               
               Cow position:chr12:45680340-45680062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):23, 18

               
               
               Conread position:323-613
               
               
               Cow position:chr12:18963865-18964158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):126, 18

               
               
               Conread position:323-617
               
               
               Cow position:chr12:28256993-28257287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:196
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):145, 26

               
               
               Conread position:323-631
               
               
               Cow position:chr12:25320977-25320676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):177, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr12:5801106-5800787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):18, 283

               
               
               Conread position:323-632
               
               
               Cow position:chr12:5940404-5940095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):91, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr12:7978100-7977799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:221
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):99, 26

               
               
               Conread position:323-632
               
               
               Cow position:chr12:8868819-8869131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:226
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):175, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr12:11109817-11109521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):91, 26

               
               
               Conread position:323-632
               
               
               Cow position:chr12:30438300-30438002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):72, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr12:40807465-40807148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):65, 18

               
               
               Conread position:323-633
               
               
               Cow position:chr12:29483823-29484139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:232
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):86, 26

               
               
               Conread position:323-635
               
               
               Cow position:chr12:44905690-44905388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):211, 18

               
               
               Conread position:323-645
               
               
               Cow position:chr12:7000542-7000853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):84, 18

               
               
               Conread position:323-645
               
               
               Cow position:chr12:45814199-45814526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):141, 26

               
               
               Conread position:324-632
               
               
               Cow position:chr12:28582447-28582740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):90, 9

               
               
               Conread position:324-632
               
               
               Cow position:chr12:29969641-29969328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):82, 17

               
               
               Conread position:324-632
               
               
               Cow position:chr12:41474151-41473847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):81, 17

               
               
               Conread position:325-624
               
               
               Cow position:chr12:46333406-46333121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):79, 16

               
               
               Conread position:325-628
               
               
               Cow position:chr12:1773600-1773911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):46, 16

               
               
               Conread position:325-631
               
               
               Cow position:chr12:33458208-33457900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:212
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):89, 16

               
               
               Conread position:325-632
               
               
               Cow position:chr12:2286642-2286333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:205
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):136, 28

               
               
               Conread position:325-632
               
               
               Cow position:chr12:18572686-18572393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):9, 17

               
               
               Conread position:325-632
               
               
               Cow position:chr12:18943597-18943892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:219
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):88, 16

               
               
               Conread position:325-632
               
               
               Cow position:chr12:23798160-23797855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:218
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):61, 16

               
               
               Conread position:327-620
               
               
               Cow position:chr12:15163198-15162914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:218
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):77, 22

               
               
               Conread position:327-628
               
               
               Cow position:chr12:5658017-5658320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):10, 23

               
               
               Conread position:328-584
               
               
               Cow position:chr12:10491330-10491077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):86, 50

               
               
               Conread position:328-632
               
               
               Cow position:chr12:18769012-18769322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):80, 39

               
               
               Conread position:341-650
               
               
               Cow position:chr12:17717111-17716817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):124, 55

               
               
               Conread position:346-613
               
               
               Cow position:chr12:3906514-3906239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):57, 70

               
               
               Conread position:351-645
               
               
               Cow position:chr12:3950309-3950612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):52, 101

               
               
               Conread position:352-624
               
               
               Cow position:chr12:31198802-31198526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):54, 83

               
               
               Conread position:361-626
               
               
               Cow position:chr12:40028728-40028997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):47, 108

               
               
               Conread position:361-632
               
               
               Cow position:chr12:20326800-20326522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):47, 96

               
               
               Conread position:366-632
               
               
               Cow position:chr12:24107527-24107786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):56, 29

               
               
               Conread position:367-632
               
               
               Cow position:chr12:12178943-12178673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):37, 68

               
               
               Conread position:369-632
               
               
               Cow position:chr12:28010891-28011147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:199
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):36, 19

               
               
               Conread position:376-632
               
               
               Cow position:chr12:3568952-3568698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):38, 33

               
               
               Conread position:378-631
               
               
               Cow position:chr12:1343101-1343350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):27, 154

               
               
               Conread position:382-632
               
               
               Cow position:chr12:3510563-3510315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):32, 71

               
               
               Conread position:387-624
               
               
               Cow position:chr12:12030828-12031075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):19, 74

               
               
               Conread position:402-622
               
               
               Cow position:chr12:30476463-30476239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):98, 56

               
               
               Conread position:402-632
               
               
               Cow position:chr12:22047453-22047221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):20, 54

               
               
               Conread position:410-609
               
               
               Cow position:chr12:44559561-44559361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):90, 45

               
               
               Conread position:410-627
               
               
               Cow position:chr12:4182716-4182939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):12, 47

               
               
               Conread position:411-609
               
               
               Cow position:chr12:18021564-18021368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):87, 51

               
               
               Conread position:411-632
               
               
               Cow position:chr12:25456091-25455866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):87, 60

               
               
               Conread position:411-632
               
               
               Cow position:chr12:28572659-28572454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):132, 29

               
               
               Conread position:411-632
               
               
               Cow position:chr12:28650929-28650704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):87, 40

               
               
               Conread position:412-632
               
               
               Cow position:chr12:32391819-32391597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):86, 41

               
               
               Conread position:412-632
               
               
               Cow position:chr12:41214350-41214570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:422-632
               
               
               Cow position:chr12:6164062-6164277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):75, 10

               
               
               Conread position:425-632
               
               
               Cow position:chr12:17702268-17702481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):73, 28

               
               
               Conread position:456-630
               
               
               Cow position:chr12:11583325-11583155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):87, 45

               
               
               Conread position:458-617
               
               
               Cow position:chr12:38511910-38512075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:458-632
               
               
               Cow position:chr12:12017806-12017628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:470-623
               
               
               Cow position:chr12:40158322-40158479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:470-630
               
               
               Cow position:chr12:19039693-19039858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:470-632
               
               
               Cow position:chr12:6226734-6226895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):30, 96

               
               
               Conread position:471-632
               
               
               Cow position:chr12:46143739-46143573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:471-672
               
               
               Cow position:chr12:3994871-3994661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):27, 197

               
               
               Conread position:476-631
               
               
               Cow position:chr12:35218494-35218652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):29, 101

               
               
               Conread position:477-632
               
               
               Cow position:chr12:28213426-28213270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:478-632
               
               
               Cow position:chr12:17472317-17472468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):15, 47

               
               
               Conread position:485-635
               
               
               Cow position:chr12:19420030-19420186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):58, 145

               
               
               Conread position:490-630
               
               
               Cow position:chr12:4593999-4593851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:111
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:492-632
               
               
               Cow position:chr12:5135037-5134891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:493-627
               
               
               Cow position:chr12:24755135-24755268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:493-632
               
               
               Cow position:chr12:9465563-9465708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:493-632
               
               
               Cow position:chr12:23154569-23154715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:495-626
               
               
               Cow position:chr12:15240835-15240966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:103
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:495-628
               
               
               Cow position:chr12:731048-731179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:100
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:495-629
               
               
               Cow position:chr12:15232177-15232043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):19, 95

               
               
               Conread position:495-631
               
               
               Cow position:chr12:24032894-24032759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:101
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:495-631
               
               
               Cow position:chr12:46635055-46635192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr12:3579173-3579032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr12:3880363-3880504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:105
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr12:4134560-4134416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr12:8710715-8710583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr12:17008093-17007949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):42, 20

               
               
               Conread position:495-632
               
               
               Cow position:chr12:18388393-18388530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:109
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr12:25805221-25805358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:111
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr12:29161924-29162059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):48, 76

               
               
               Conread position:495-632
               
               
               Cow position:chr12:31841331-31841189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr12:40307587-40307448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr12:42167537-42167397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):91, 61

               
               
               Conread position:495-632
               
               
               Cow position:chr12:44766971-44766836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:495-645
               
               
               Cow position:chr12:34148460-34148612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):69, 105

               
               
               Conread position:497-632
               
               
               Cow position:chr12:36954487-36954623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:497-632
               
               
               Cow position:chr12:37123400-37123265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):9, 49

               
               
               Conread position:502-632
               
               
               Cow position:chr12:31925535-31925402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:503-632
               
               
               Cow position:chr12:12976296-12976434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:505-632
               
               
               Cow position:chr12:39486312-39486181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:509-632
               
               
               Cow position:chr12:7109066-7108940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:509-645
               
               
               Cow position:chr12:17495316-17495453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:514-632
               
               
               Cow position:chr12:26777284-26777401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:96
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):29, 55

               
               
               Conread position:514-639
               
               
               Cow position:chr12:19372232-19372361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:525-632
               
               
               Cow position:chr12:18937249-18937139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:91
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):62, 17

               
               
               Conread position:535-650
               
               
               Cow position:chr12:15699480-15699364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:91
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:544-630
               
               
               Cow position:chr12:3600056-3600142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:87
               
               
               Alignm identity:75
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:143-632
               
               
               Cow position:chr13:6617066-6616553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:315
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):94, 217

               
               
               Conread position:160-615
               
               
               Cow position:chr13:49823737-49824205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:285
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):77, 200

               
               
               Conread position:189-382
               
               
               Cow position:chr13:51106868-51107062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):6, 49

               
               
               Conread position:190-420
               
               
               Cow position:chr13:24094573-24094337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):47, 169

               
               
               Conread position:196-632
               
               
               Cow position:chr13:4552578-4552994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:285
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):338, 10

               
               
               Conread position:199-630
               
               
               Cow position:chr13:57494417-57493990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:283
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):112, 47

               
               
               Conread position:200-632
               
               
               Cow position:chr13:12574387-12574829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:302
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):120, 28

               
               
               Conread position:200-632
               
               
               Cow position:chr13:45023464-45023013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 29

               
               
               Conread position:201-584
               
               
               Cow position:chr13:26698739-26698350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:246
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):112, 28

               
               
               Conread position:203-627
               
               
               Cow position:chr13:15958380-15958811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:283
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):227, 142

               
               
               Conread position:203-632
               
               
               Cow position:chr13:8362987-8362551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 28

               
               
               Conread position:204-412
               
               
               Cow position:chr13:24215919-24215702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):24, 155

               
               
               Conread position:206-519
               
               
               Cow position:chr13:14940559-14940886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:217
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):112, 21

               
               
               Conread position:206-630
               
               
               Cow position:chr13:9587824-9587390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:296
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):25, 52

               
               
               Conread position:207-420
               
               
               Cow position:chr13:55765415-55765198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):33, 128

               
               
               Conread position:208-567
               
               
               Cow position:chr13:11260037-11260399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):16, 139

               
               
               Conread position:208-632
               
               
               Cow position:chr13:61977196-61976768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:284
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):22, 156

               
               
               Conread position:208-645
               
               
               Cow position:chr13:15289154-15288718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:294
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):105, 21

               
               
               Conread position:209-483
               
               
               Cow position:chr13:40541349-40541062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:204
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):20, 145

               
               
               Conread position:209-594
               
               
               Cow position:chr13:25537400-25537789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:259
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):28, 71

               
               
               Conread position:209-632
               
               
               Cow position:chr13:21235902-21235490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:288
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):88, 21

               
               
               Conread position:209-632
               
               
               Cow position:chr13:25696003-25695573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:294
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):72, 138

               
               
               Conread position:210-416
               
               
               Cow position:chr13:33054608-33054395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):109, 134

               
               
               Conread position:210-420
               
               
               Cow position:chr13:16907980-16908197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):89, 18

               
               
               Conread position:210-445
               
               
               Cow position:chr13:7046645-7046879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):174, 80

               
               
               Conread position:211-631
               
               
               Cow position:chr13:34281447-34281874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:275
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):84, 168

               
               
               Conread position:212-453
               
               
               Cow position:chr13:52477877-52477632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):95, 20

               
               
               Conread position:212-539
               
               
               Cow position:chr13:54128829-54128491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:240
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):109, 19

               
               
               Conread position:212-630
               
               
               Cow position:chr13:8245545-8245139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:281
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):209, 15

               
               
               Conread position:212-632
               
               
               Cow position:chr13:5263510-5263091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 19

               
               
               Conread position:213-405
               
               
               Cow position:chr13:50583051-50582859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):23, 128

               
               
               Conread position:213-420
               
               
               Cow position:chr13:9124692-9124906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):9, 133

               
               
               Conread position:213-532
               
               
               Cow position:chr13:28291087-28291420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:213-582
               
               
               Cow position:chr13:18058480-18058104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:249
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):16, 234

               
               
               Conread position:213-609
               
               
               Cow position:chr13:20473906-20473515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:262
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):170, 19

               
               
               Conread position:213-624
               
               
               Cow position:chr13:55582962-55583386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:293
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):106, 134

               
               
               Conread position:213-631
               
               
               Cow position:chr13:13260763-13261202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:283
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):58, 12

               
               
               Conread position:213-632
               
               
               Cow position:chr13:40490986-40491428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:302
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):108, 14

               
               
               Conread position:213-632
               
               
               Cow position:chr13:54094596-54095001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:289
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):196, 15

               
               
               Conread position:214-390
               
               
               Cow position:chr13:26377652-26377466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:214-410
               
               
               Cow position:chr13:37555101-37554905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):107, 18

               
               
               Conread position:214-421
               
               
               Cow position:chr13:34533158-34532949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):93, 13

               
               
               Conread position:214-443
               
               
               Cow position:chr13:25941493-25941264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):93, 43

               
               
               Conread position:214-540
               
               
               Cow position:chr13:46043945-46044260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:232
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):193, 15

               
               
               Conread position:214-593
               
               
               Cow position:chr13:28139350-28139722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:249
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):57, 141

               
               
               Conread position:214-629
               
               
               Cow position:chr13:17745027-17745431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 102

               
               
               Conread position:214-632
               
               
               Cow position:chr13:151740-152146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:284
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):106, 18

               
               
               Conread position:214-632
               
               
               Cow position:chr13:15041706-15041277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 143

               
               
               Conread position:214-632
               
               
               Cow position:chr13:15193119-15192699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 126

               
               
               Conread position:215-374
               
               
               Cow position:chr13:2529180-2529016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):104, 16

               
               
               Conread position:215-418
               
               
               Cow position:chr13:3153518-3153728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):104, 15

               
               
               Conread position:215-422
               
               
               Cow position:chr13:4965170-4965371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):98, 124

               
               
               Conread position:215-623
               
               
               Cow position:chr13:11820930-11821328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:271
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):111, 48

               
               
               Conread position:215-632
               
               
               Cow position:chr13:20271459-20271020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:295
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):85, 16

               
               
               Conread position:215-632
               
               
               Cow position:chr13:37069111-37069544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 136

               
               
               Conread position:215-632
               
               
               Cow position:chr13:46111738-46112162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 78

               
               
               Conread position:215-632
               
               
               Cow position:chr13:48252198-48251797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:288
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):104, 36

               
               
               Conread position:215-633
               
               
               Cow position:chr13:5279433-5278993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:309
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):35, 17

               
               
               Conread position:215-643
               
               
               Cow position:chr13:13501840-13501413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:288
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):175, 13

               
               
               Conread position:216-315
               
               
               Cow position:chr13:54690137-54690236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:100
               
               
               Alignm identity:82
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:216-325
               
               
               Cow position:chr13:8555117-8555225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:91
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):103, 90

               
               
               Conread position:216-326
               
               
               Cow position:chr13:39775719-39775609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:88
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:216-383
               
               
               Cow position:chr13:53847350-53847178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):15, 130

               
               
               Conread position:216-396
               
               
               Cow position:chr13:57322920-57323102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):85, 118

               
               
               Conread position:216-404
               
               
               Cow position:chr13:50565540-50565349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):93, 83

               
               
               Conread position:216-405
               
               
               Cow position:chr13:13780949-13781145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):35, 13

               
               
               Conread position:216-405
               
               
               Cow position:chr13:48126875-48127073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):103, 132

               
               
               Conread position:216-418
               
               
               Cow position:chr13:28605626-28605412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):15, 145

               
               
               Conread position:216-420
               
               
               Cow position:chr13:11410478-11410694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):10, 203

               
               
               Conread position:216-420
               
               
               Cow position:chr13:21981200-21980996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):21, 137

               
               
               Conread position:216-420
               
               
               Cow position:chr13:42302271-42302058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):101, 142

               
               
               Conread position:216-420
               
               
               Cow position:chr13:47340097-47340301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):21, 12

               
               
               Conread position:216-449
               
               
               Cow position:chr13:15083432-15083672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):93, 186

               
               
               Conread position:216-449
               
               
               Cow position:chr13:15996804-15997047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):15, 53

               
               
               Conread position:216-450
               
               
               Cow position:chr13:26960027-26959791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):105, 139

               
               
               Conread position:216-452
               
               
               Cow position:chr13:33962992-33962754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):13, 55

               
               
               Conread position:216-487
               
               
               Cow position:chr13:52641181-52640902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:202
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):21, 62

               
               
               Conread position:216-501
               
               
               Cow position:chr13:17823182-17822889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):31, 141

               
               
               Conread position:216-539
               
               
               Cow position:chr13:620473-620159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):112, 24

               
               
               Conread position:216-561
               
               
               Cow position:chr13:21280730-21280363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:245
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):99, 132

               
               
               Conread position:216-576
               
               
               Cow position:chr13:11321830-11321477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:242
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):22, 49

               
               
               Conread position:216-618
               
               
               Cow position:chr13:5758561-5758164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 48

               
               
               Conread position:216-628
               
               
               Cow position:chr13:57475647-57475225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 138

               
               
               Conread position:216-629
               
               
               Cow position:chr13:11768256-11767850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:273
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):164, 83

               
               
               Conread position:216-631
               
               
               Cow position:chr13:10845386-10845787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 94

               
               
               Conread position:216-632
               
               
               Cow position:chr13:17114612-17114185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 143

               
               
               Conread position:216-632
               
               
               Cow position:chr13:20880056-20879639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 131

               
               
               Conread position:216-632
               
               
               Cow position:chr13:21242302-21241897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):229, 13

               
               
               Conread position:216-632
               
               
               Cow position:chr13:31808293-31808707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:279
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):12, 58

               
               
               Conread position:216-632
               
               
               Cow position:chr13:37775436-37775032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:294
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):20, 130

               
               
               Conread position:216-632
               
               
               Cow position:chr13:45352796-45353241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 145

               
               
               Conread position:216-632
               
               
               Cow position:chr13:47964405-47964006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:277
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):13, 86

               
               
               Conread position:216-632
               
               
               Cow position:chr13:51015416-51014985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:296
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):26, 150

               
               
               Conread position:216-645
               
               
               Cow position:chr13:18989495-18989913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:297
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):50, 13

               
               
               Conread position:217-325
               
               
               Cow position:chr13:50545315-50545423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:87
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:217-386
               
               
               Cow position:chr13:5659995-5659821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):22, 138

               
               
               Conread position:217-404
               
               
               Cow position:chr13:48373544-48373354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):98, 138

               
               
               Conread position:217-412
               
               
               Cow position:chr13:21246941-21246738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):102, 142

               
               
               Conread position:217-413
               
               
               Cow position:chr13:29802400-29802589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):129, 13

               
               
               Conread position:217-577
               
               
               Cow position:chr13:21269811-21269440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):14, 141

               
               
               Conread position:217-582
               
               
               Cow position:chr13:3160174-3160536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:245
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):90, 137

               
               
               Conread position:217-590
               
               
               Cow position:chr13:18999301-18999695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:265
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):19, 135

               
               
               Conread position:217-593
               
               
               Cow position:chr13:54582646-54583033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:246
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):104, 192

               
               
               Conread position:217-619
               
               
               Cow position:chr13:19188085-19188486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 75

               
               
               Conread position:217-632
               
               
               Cow position:chr13:1170229-1170663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:283
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):20, 144

               
               
               Conread position:217-632
               
               
               Cow position:chr13:15868881-15869314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:299
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):78, 135

               
               
               Conread position:217-632
               
               
               Cow position:chr13:19582310-19581892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:263
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):13, 75

               
               
               Conread position:217-632
               
               
               Cow position:chr13:32282898-32283322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 31

               
               
               Conread position:217-632
               
               
               Cow position:chr13:43595331-43594920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:281
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):137, 14

               
               
               Conread position:217-632
               
               
               Cow position:chr13:51528665-51528251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:277
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):115, 15

               
               
               Conread position:217-632
               
               
               Cow position:chr13:51940515-51940926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 54

               
               
               Conread position:217-633
               
               
               Cow position:chr13:26480428-26480018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:287
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):95, 11

               
               
               Conread position:218-325
               
               
               Cow position:chr13:20654091-20653982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:89
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:218-326
               
               
               Cow position:chr13:52929203-52929312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:91
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:218-403
               
               
               Cow position:chr13:20368111-20367916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):19, 143

               
               
               Conread position:218-403
               
               
               Cow position:chr13:24107774-24107585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):19, 136

               
               
               Conread position:218-404
               
               
               Cow position:chr13:17994601-17994409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):15, 139

               
               
               Conread position:218-406
               
               
               Cow position:chr13:41115611-41115808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):11, 143

               
               
               Conread position:218-407
               
               
               Cow position:chr13:3149660-3149462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):96, 139

               
               
               Conread position:218-414
               
               
               Cow position:chr13:45499004-45499205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):103, 96

               
               
               Conread position:218-419
               
               
               Cow position:chr13:30396490-30396688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):19, 124

               
               
               Conread position:218-420
               
               
               Cow position:chr13:54236581-54236785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):21, 50

               
               
               Conread position:218-425
               
               
               Cow position:chr13:23975393-23975183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):136, 118

               
               
               Conread position:218-430
               
               
               Cow position:chr13:28536550-28536333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):21, 142

               
               
               Conread position:218-528
               
               
               Cow position:chr13:20137590-20137915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):103, 140

               
               
               Conread position:218-563
               
               
               Cow position:chr13:49795810-49796144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):20, 105

               
               
               Conread position:218-580
               
               
               Cow position:chr13:20360048-20360413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:260
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):101, 143

               
               
               Conread position:218-586
               
               
               Cow position:chr13:20174512-20174899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 11

               
               
               Conread position:218-605
               
               
               Cow position:chr13:866907-867296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:254
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):105, 13

               
               
               Conread position:218-615
               
               
               Cow position:chr13:49023093-49022692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 240

               
               
               Conread position:218-624
               
               
               Cow position:chr13:9906501-9906930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:291
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):102, 141

               
               
               Conread position:218-627
               
               
               Cow position:chr13:1231415-1231841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:285
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):93, 136

               
               
               Conread position:218-631
               
               
               Cow position:chr13:17021951-17021526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:284
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):39, 11

               
               
               Conread position:218-632
               
               
               Cow position:chr13:9975293-9974873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:288
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):138, 13

               
               
               Conread position:218-632
               
               
               Cow position:chr13:12989632-12990042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:282
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):19, 70

               
               
               Conread position:218-632
               
               
               Cow position:chr13:32017745-32017327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 143

               
               
               Conread position:218-632
               
               
               Cow position:chr13:33256271-33256691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:290
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):101, 14

               
               
               Conread position:218-632
               
               
               Cow position:chr13:52749691-52749293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:287
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):20, 65

               
               
               Conread position:218-632
               
               
               Cow position:chr13:52893921-52894339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 59

               
               
               Conread position:219-402
               
               
               Cow position:chr13:1339371-1339179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):101, 131

               
               
               Conread position:219-405
               
               
               Cow position:chr13:23805248-23805052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):37, 142

               
               
               Conread position:219-412
               
               
               Cow position:chr13:17089739-17089546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):178, 61

               
               
               Conread position:219-412
               
               
               Cow position:chr13:41979364-41979175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):19, 125

               
               
               Conread position:219-414
               
               
               Cow position:chr13:52464513-52464714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):101, 140

               
               
               Conread position:219-420
               
               
               Cow position:chr13:14411665-14411873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):100, 141

               
               
               Conread position:219-420
               
               
               Cow position:chr13:20042490-20042283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):107, 131

               
               
               Conread position:219-421
               
               
               Cow position:chr13:8699967-8699754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):96, 13

               
               
               Conread position:219-421
               
               
               Cow position:chr13:37030122-37030325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):18, 118

               
               
               Conread position:219-612
               
               
               Cow position:chr13:14016784-14016390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:267
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):28, 48

               
               
               Conread position:219-633
               
               
               Cow position:chr13:22115449-22115900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:308
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):102, 52

               
               
               Conread position:220-331
               
               
               Cow position:chr13:10055191-10055302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:89
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:220-406
               
               
               Cow position:chr13:10715637-10715829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):82, 8

               
               
               Conread position:220-444
               
               
               Cow position:chr13:57770208-57769982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):93, 222

               
               
               Conread position:220-534
               
               
               Cow position:chr13:25978420-25978094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):17, 231

               
               
               Conread position:220-590
               
               
               Cow position:chr13:21106920-21107291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:241
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):75, 11

               
               
               Conread position:220-617
               
               
               Cow position:chr13:34375036-34375449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:281
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):36, 11

               
               
               Conread position:220-622
               
               
               Cow position:chr13:10989299-10988885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:281
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):89, 138

               
               
               Conread position:220-632
               
               
               Cow position:chr13:12449207-12448793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:297
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):17, 45

               
               
               Conread position:220-632
               
               
               Cow position:chr13:14063745-14063329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:275
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):95, 12

               
               
               Conread position:220-632
               
               
               Cow position:chr13:37593171-37592743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 45

               
               
               Conread position:220-632
               
               
               Cow position:chr13:43479835-43480256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:284
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):27, 17

               
               
               Conread position:220-632
               
               
               Cow position:chr13:45074127-45073740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:276
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):235, 12

               
               
               Conread position:221-397
               
               
               Cow position:chr13:55007994-55007813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):92, 121

               
               
               Conread position:221-467
               
               
               Cow position:chr13:47243774-47243524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):90, 10

               
               
               Conread position:221-584
               
               
               Cow position:chr13:38697832-38698198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):17, 46

               
               
               Conread position:221-607
               
               
               Cow position:chr13:9800295-9800669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 66

               
               
               Conread position:221-622
               
               
               Cow position:chr13:38329394-38329815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:279
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):94, 226

               
               
               Conread position:221-627
               
               
               Cow position:chr13:16247420-16247843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:283
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):97, 139

               
               
               Conread position:221-632
               
               
               Cow position:chr13:19223426-19223844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 139

               
               
               Conread position:222-445
               
               
               Cow position:chr13:10522715-10522943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):10, 93

               
               
               Conread position:222-539
               
               
               Cow position:chr13:16038508-16038191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):15, 120

               
               
               Conread position:222-631
               
               
               Cow position:chr13:16014581-16015001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:291
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):73, 9

               
               
               Conread position:222-632
               
               
               Cow position:chr13:54701959-54702386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:283
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):99, 10

               
               
               Conread position:224-321
               
               
               Cow position:chr13:5735141-5735238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:98
               
               
               Alignm identity:82
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:224-389
               
               
               Cow position:chr13:21955291-21955116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):95, 136

               
               
               Conread position:224-539
               
               
               Cow position:chr13:13533883-13533568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):97, 118

               
               
               Conread position:224-573
               
               
               Cow position:chr13:2803264-2803604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:234
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):14, 90

               
               
               Conread position:224-627
               
               
               Cow position:chr13:15195422-15195019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:273
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):90, 112

               
               
               Conread position:224-631
               
               
               Cow position:chr13:34507673-34508070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:270
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):12, 65

               
               
               Conread position:224-632
               
               
               Cow position:chr13:12670673-12670250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:273
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):97, 53

               
               
               Conread position:224-632
               
               
               Cow position:chr13:36876845-36877267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:279
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):89, 12

               
               
               Conread position:226-621
               
               
               Cow position:chr13:6540521-6540129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:267
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):11, 67

               
               
               Conread position:227-606
               
               
               Cow position:chr13:29831645-29831265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:275
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):135, 72

               
               
               Conread position:227-619
               
               
               Cow position:chr13:52055811-52055414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:277
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):87, 55

               
               
               Conread position:227-631
               
               
               Cow position:chr13:20839363-20839761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:279
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):107, 16

               
               
               Conread position:227-632
               
               
               Cow position:chr13:54382143-54381739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:270
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):9, 190

               
               
               Conread position:228-434
               
               
               Cow position:chr13:50646846-50646636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):81, 127

               
               
               Conread position:228-556
               
               
               Cow position:chr13:14575997-14576325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 126

               
               
               Conread position:228-580
               
               
               Cow position:chr13:28552368-28552739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:251
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):8, 118

               
               
               Conread position:228-583
               
               
               Cow position:chr13:8374977-8374626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):186, 8

               
               
               Conread position:228-603
               
               
               Cow position:chr13:20579700-20580075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:268
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):8, 42

               
               
               Conread position:228-630
               
               
               Cow position:chr13:40722913-40722516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:270
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):21, 89

               
               
               Conread position:228-631
               
               
               Cow position:chr13:35659537-35659947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:275
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):41, 167

               
               
               Conread position:228-631
               
               
               Cow position:chr13:52283691-52284103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:282
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:228-632
               
               
               Cow position:chr13:1155923-1155513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:275
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):8, 28

               
               
               Conread position:228-632
               
               
               Cow position:chr13:6079620-6079224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 80

               
               
               Conread position:228-632
               
               
               Cow position:chr13:7059240-7059670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:293
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):8, 134

               
               
               Conread position:228-632
               
               
               Cow position:chr13:12876194-12875790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:286
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):8, 132

               
               
               Conread position:228-632
               
               
               Cow position:chr13:34261017-34261427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 116

               
               
               Conread position:228-632
               
               
               Cow position:chr13:42113797-42114216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:283
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):8, 189

               
               
               Conread position:228-632
               
               
               Cow position:chr13:43139417-43139030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:283
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):8, 71

               
               
               Conread position:228-645
               
               
               Cow position:chr13:10925141-10924696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 123

               
               
               Conread position:229-632
               
               
               Cow position:chr13:20821053-20820645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:268
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):76, 200

               
               
               Conread position:232-392
               
               
               Cow position:chr13:34300061-34299907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):105, 60

               
               
               Conread position:232-395
               
               
               Cow position:chr13:37946599-37946434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):77, 120

               
               
               Conread position:232-405
               
               
               Cow position:chr13:28376775-28376595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):87, 114

               
               
               Conread position:232-412
               
               
               Cow position:chr13:16163375-16163553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):75, 34

               
               
               Conread position:232-412
               
               
               Cow position:chr13:20535493-20535670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):14, 84

               
               
               Conread position:232-413
               
               
               Cow position:chr13:28695645-28695832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):87, 32

               
               
               Conread position:232-420
               
               
               Cow position:chr13:49356262-49356069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):75, 123

               
               
               Conread position:232-421
               
               
               Cow position:chr13:27028118-27027915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):72, 115

               
               
               Conread position:232-438
               
               
               Cow position:chr13:47676150-47675941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):87, 125

               
               
               Conread position:232-474
               
               
               Cow position:chr13:17813258-17813504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):55, 119

               
               
               Conread position:232-505
               
               
               Cow position:chr13:62007894-62008178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):89, 114

               
               
               Conread position:232-513
               
               
               Cow position:chr13:7149712-7149437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):175, 35

               
               
               Conread position:232-531
               
               
               Cow position:chr13:56035070-56034765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):77, 110

               
               
               Conread position:232-563
               
               
               Cow position:chr13:17438075-17437742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):49, 115

               
               
               Conread position:232-582
               
               
               Cow position:chr13:44003486-44003864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:269
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):67, 31

               
               
               Conread position:232-588
               
               
               Cow position:chr13:25604818-25604475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:242
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):266, 11

               
               
               Conread position:232-590
               
               
               Cow position:chr13:45593710-45594056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:259
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):81, 121

               
               
               Conread position:232-613
               
               
               Cow position:chr13:607476-607085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:259
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):95, 200

               
               
               Conread position:232-628
               
               
               Cow position:chr13:22085945-22085560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:275
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):151, 29

               
               
               Conread position:232-631
               
               
               Cow position:chr13:21275643-21276049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 47

               
               
               Conread position:232-631
               
               
               Cow position:chr13:23667044-23667453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:274
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):81, 29

               
               
               Conread position:232-631
               
               
               Cow position:chr13:55674423-55674011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:271
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):76, 230

               
               
               Conread position:232-631
               
               
               Cow position:chr13:60509338-60508922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:291
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):20, 128

               
               
               Conread position:232-632
               
               
               Cow position:chr13:2192524-2192903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:268
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):180, 39

               
               
               Conread position:232-632
               
               
               Cow position:chr13:2773902-2774319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:283
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):88, 127

               
               
               Conread position:232-632
               
               
               Cow position:chr13:7076027-7076451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 132

               
               
               Conread position:232-632
               
               
               Cow position:chr13:13088819-13089219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:266
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):89, 221

               
               
               Conread position:232-632
               
               
               Cow position:chr13:17855154-17855569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:286
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):92, 130

               
               
               Conread position:232-632
               
               
               Cow position:chr13:18166519-18166925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 180

               
               
               Conread position:232-632
               
               
               Cow position:chr13:19033342-19033741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 126

               
               
               Conread position:232-632
               
               
               Cow position:chr13:19883247-19882840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 132

               
               
               Conread position:232-632
               
               
               Cow position:chr13:20497429-20497847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:280
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):86, 128

               
               
               Conread position:232-632
               
               
               Cow position:chr13:21288298-21287895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:273
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):83, 141

               
               
               Conread position:232-632
               
               
               Cow position:chr13:23512167-23512554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:285
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):34, 91

               
               
               Conread position:232-632
               
               
               Cow position:chr13:24715036-24715437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 80

               
               
               Conread position:232-632
               
               
               Cow position:chr13:25817316-25817708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:271
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):83, 155

               
               
               Conread position:232-632
               
               
               Cow position:chr13:30650972-30651370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:280
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):92, 128

               
               
               Conread position:232-632
               
               
               Cow position:chr13:33875459-33875857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 128

               
               
               Conread position:232-632
               
               
               Cow position:chr13:42200407-42200814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 109

               
               
               Conread position:232-632
               
               
               Cow position:chr13:42860780-42860375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:264
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):83, 37

               
               
               Conread position:232-632
               
               
               Cow position:chr13:60600149-60599747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:269
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):94, 130

               
               
               Conread position:232-633
               
               
               Cow position:chr13:18851875-18852272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:270
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):88, 67

               
               
               Conread position:232-650
               
               
               Cow position:chr13:17159095-17158658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:286
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):96, 119

               
               
               Conread position:233-403
               
               
               Cow position:chr13:16476641-16476820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):86, 115

               
               
               Conread position:233-435
               
               
               Cow position:chr13:24796671-24796871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):90, 30

               
               
               Conread position:233-472
               
               
               Cow position:chr13:52341745-52341989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):45, 38

               
               
               Conread position:233-624
               
               
               Cow position:chr13:20509515-20509919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 131

               
               
               Conread position:233-631
               
               
               Cow position:chr13:311220-311624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:273
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):83, 174

               
               
               Conread position:233-632
               
               
               Cow position:chr13:15445837-15446241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:288
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):159, 58

               
               
               Conread position:233-632
               
               
               Cow position:chr13:34729053-34728642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:284
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):76, 33

               
               
               Conread position:234-392
               
               
               Cow position:chr13:40483191-40483026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):85, 122

               
               
               Conread position:234-405
               
               
               Cow position:chr13:17958629-17958801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):89, 121

               
               
               Conread position:234-487
               
               
               Cow position:chr13:1147362-1147103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):93, 226

               
               
               Conread position:234-632
               
               
               Cow position:chr13:20784383-20784783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 223

               
               
               Conread position:234-632
               
               
               Cow position:chr13:47007924-47007541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:271
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):87, 80

               
               
               Conread position:235-632
               
               
               Cow position:chr13:27525469-27525066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:270
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):61, 28

               
               
               Conread position:235-632
               
               
               Cow position:chr13:53195485-53195097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:273
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):86, 30

               
               
               Conread position:235-632
               
               
               Cow position:chr13:60966569-60966959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:272
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):89, 48

               
               
               Conread position:236-560
               
               
               Cow position:chr13:1568725-1569046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):57, 96

               
               
               Conread position:236-621
               
               
               Cow position:chr13:13320588-13320964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:258
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):85, 221

               
               
               Conread position:236-629
               
               
               Cow position:chr13:12233645-12233265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:256
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):178, 56

               
               
               Conread position:236-630
               
               
               Cow position:chr13:25926579-25926985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 121

               
               
               Conread position:236-630
               
               
               Cow position:chr13:44201800-44202182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:271
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):71, 102

               
               
               Conread position:236-631
               
               
               Cow position:chr13:6973953-6974354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 109

               
               
               Conread position:236-631
               
               
               Cow position:chr13:35526403-35526023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:265
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):120, 29

               
               
               Conread position:236-632
               
               
               Cow position:chr13:4665059-4664667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:273
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):257, 84

               
               
               Conread position:236-632
               
               
               Cow position:chr13:15621600-15622002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:270
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):61, 110

               
               
               Conread position:236-632
               
               
               Cow position:chr13:19393087-19393482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 33

               
               
               Conread position:236-632
               
               
               Cow position:chr13:25435315-25434934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:275
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):169, 63

               
               
               Conread position:236-632
               
               
               Cow position:chr13:59170435-59170852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:292
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):69, 132

               
               
               Conread position:236-633
               
               
               Cow position:chr13:19022055-19022474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:285
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):77, 185

               
               
               Conread position:236-633
               
               
               Cow position:chr13:34995521-34995130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:277
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):160, 56

               
               
               Conread position:237-585
               
               
               Cow position:chr13:6442315-6441952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:247
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):57, 120

               
               
               Conread position:237-632
               
               
               Cow position:chr13:48165630-48165234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:260
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):78, 7

               
               
               Conread position:238-622
               
               
               Cow position:chr13:17338218-17338619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:272
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):88, 123

               
               
               Conread position:238-627
               
               
               Cow position:chr13:16343503-16343877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:260
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):210, 61

               
               
               Conread position:240-412
               
               
               Cow position:chr13:57986137-57985964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):80, 66

               
               
               Conread position:240-632
               
               
               Cow position:chr13:26848034-26847629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:286
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):81, 7

               
               
               Conread position:241-420
               
               
               Cow position:chr13:20217602-20217418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):79, 171

               
               
               Conread position:242-421
               
               
               Cow position:chr13:33974543-33974714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):170, 64

               
               
               Conread position:242-473
               
               
               Cow position:chr13:12673491-12673260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):160, 74

               
               
               Conread position:242-624
               
               
               Cow position:chr13:59688066-59687692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:259
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):164, 76

               
               
               Conread position:242-630
               
               
               Cow position:chr13:48597706-48598097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:273
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):71, 113

               
               
               Conread position:242-632
               
               
               Cow position:chr13:972100-971703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:266
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):61, 150

               
               
               Conread position:242-635
               
               
               Cow position:chr13:47186027-47186422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:278
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):32, 224

               
               
               Conread position:243-627
               
               
               Cow position:chr13:24753691-24754074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 98

               
               
               Conread position:243-632
               
               
               Cow position:chr13:12206859-12207238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:261
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):195, 63

               
               
               Conread position:243-632
               
               
               Cow position:chr13:17821460-17821064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:266
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):158, 60

               
               
               Conread position:243-632
               
               
               Cow position:chr13:23270395-23270018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:269
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):17, 60

               
               
               Conread position:243-632
               
               
               Cow position:chr13:33281821-33282209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:258
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):167, 41

               
               
               Conread position:246-412
               
               
               Cow position:chr13:6465882-6465719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):76, 47

               
               
               Conread position:246-424
               
               
               Cow position:chr13:38012140-38012317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):168, 75

               
               
               Conread position:246-478
               
               
               Cow position:chr13:56958778-56959010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):97, 75

               
               
               Conread position:246-547
               
               
               Cow position:chr13:19779054-19778737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):70, 111

               
               
               Conread position:246-627
               
               
               Cow position:chr13:20570529-20570922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:258
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):94, 157

               
               
               Conread position:246-629
               
               
               Cow position:chr13:49804789-49805167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):168, 23

               
               
               Conread position:246-631
               
               
               Cow position:chr13:24369386-24369778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:264
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):69, 14

               
               
               Conread position:246-632
               
               
               Cow position:chr13:15974419-15974805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:269
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):70, 166

               
               
               Conread position:246-632
               
               
               Cow position:chr13:26261991-26261599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 113

               
               
               Conread position:246-632
               
               
               Cow position:chr13:30025930-30026307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:257
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):139, 20

               
               
               Conread position:246-632
               
               
               Cow position:chr13:37521948-37521537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:281
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):32, 103

               
               
               Conread position:248-409
               
               
               Cow position:chr13:57446310-57446152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:248-628
               
               
               Cow position:chr13:15991428-15991031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:273
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):51, 100

               
               
               Conread position:248-632
               
               
               Cow position:chr13:44626168-44626575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:266
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):78, 113

               
               
               Conread position:249-632
               
               
               Cow position:chr13:52637101-52637477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:262
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):75, 112

               
               
               Conread position:251-632
               
               
               Cow position:chr13:34263567-34263178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:249
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):70, 99

               
               
               Conread position:251-632
               
               
               Cow position:chr13:52228292-52227905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):64, 104

               
               
               Conread position:253-629
               
               
               Cow position:chr13:12282644-12283030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:263
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):169, 61

               
               
               Conread position:254-632
               
               
               Cow position:chr13:24230018-24230408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:273
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):61, 98

               
               
               Conread position:255-631
               
               
               Cow position:chr13:20606311-20605925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:258
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):71, 107

               
               
               Conread position:255-632
               
               
               Cow position:chr13:34035183-34035563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:250
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):193, 98

               
               
               Conread position:258-632
               
               
               Cow position:chr13:58043438-58043824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:257
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):62, 94

               
               
               Conread position:266-632
               
               
               Cow position:chr13:23478849-23479224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:255
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):41, 222

               
               
               Conread position:266-645
               
               
               Cow position:chr13:20666565-20666178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:259
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):55, 144

               
               
               Conread position:269-632
               
               
               Cow position:chr13:3315844-3315479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):19, 51

               
               
               Conread position:271-626
               
               
               Cow position:chr13:25547760-25547404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:250
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):50, 88

               
               
               Conread position:272-632
               
               
               Cow position:chr13:18491425-18491789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:251
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):43, 73

               
               
               Conread position:280-589
               
               
               Cow position:chr13:46736053-46736365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):22, 64

               
               
               Conread position:286-632
               
               
               Cow position:chr13:1043121-1042761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:251
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):122, 32

               
               
               Conread position:287-631
               
               
               Cow position:chr13:11096023-11096366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):39, 10

               
               
               Conread position:287-632
               
               
               Cow position:chr13:9246581-9246909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):141, 12

               
               
               Conread position:288-631
               
               
               Cow position:chr13:60973928-60974272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:242
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):11, 33

               
               
               Conread position:295-645
               
               
               Cow position:chr13:52586182-52585812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:251
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):106, 155

               
               
               Conread position:297-628
               
               
               Cow position:chr13:20562849-20563188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:233
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):23, 54

               
               
               Conread position:298-630
               
               
               Cow position:chr13:8609692-8609354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):17, 83

               
               
               Conread position:298-632
               
               
               Cow position:chr13:13465907-13465595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:227
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):248, 43

               
               
               Conread position:298-632
               
               
               Cow position:chr13:23856066-23856410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):17, 160

               
               
               Conread position:298-632
               
               
               Cow position:chr13:60430222-60429883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:245
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):25, 54

               
               
               Conread position:299-624
               
               
               Cow position:chr13:2404616-2404930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:222
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):218, 31

               
               
               Conread position:299-629
               
               
               Cow position:chr13:51822014-51821700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:225
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):14, 43

               
               
               Conread position:299-632
               
               
               Cow position:chr13:23167245-23166901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 54

               
               
               Conread position:301-628
               
               
               Cow position:chr13:17622149-17622475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):14, 46

               
               
               Conread position:302-631
               
               
               Cow position:chr13:9593369-9593701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 33

               
               
               Conread position:302-632
               
               
               Cow position:chr13:43185021-43184678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:240
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):19, 42

               
               
               Conread position:303-627
               
               
               Cow position:chr13:61990460-61990144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):197, 42

               
               
               Conread position:304-631
               
               
               Cow position:chr13:15885158-15884819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):98, 167

               
               
               Conread position:305-632
               
               
               Cow position:chr13:37484413-37484075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):96, 15

               
               
               Conread position:307-614
               
               
               Cow position:chr13:15110182-15110501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:220
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):107, 34

               
               
               Conread position:308-631
               
               
               Cow position:chr13:890302-889985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:219
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):38, 19

               
               
               Conread position:308-632
               
               
               Cow position:chr13:43194038-43194370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:226
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):26, 12

               
               
               Conread position:309-632
               
               
               Cow position:chr13:7663551-7663234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:223
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):99, 11

               
               
               Conread position:310-647
               
               
               Cow position:chr13:5082521-5082865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):73, 133

               
               
               Conread position:316-628
               
               
               Cow position:chr13:31813752-31814058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):92, 126

               
               
               Conread position:316-632
               
               
               Cow position:chr13:13176523-13176844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):6, 144

               
               
               Conread position:318-633
               
               
               Cow position:chr13:6061129-6060811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:219
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):96, 23

               
               
               Conread position:319-632
               
               
               Cow position:chr13:12202241-12202560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:215
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):76, 253

               
               
               Conread position:319-632
               
               
               Cow position:chr13:17439889-17439571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:216
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):84, 122

               
               
               Conread position:319-632
               
               
               Cow position:chr13:17971150-17970839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:210
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):91, 48

               
               
               Conread position:319-632
               
               
               Cow position:chr13:37803770-37804074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):69, 89

               
               
               Conread position:320-588
               
               
               Cow position:chr13:37640470-37640737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):178, 21

               
               
               Conread position:320-602
               
               
               Cow position:chr13:9265946-9265668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):119, 21

               
               
               Conread position:320-626
               
               
               Cow position:chr13:14771332-14771650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):9, 30

               
               
               Conread position:320-631
               
               
               Cow position:chr13:38278267-38277943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):88, 23

               
               
               Conread position:320-631
               
               
               Cow position:chr13:54344661-54344970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):94, 29

               
               
               Conread position:320-632
               
               
               Cow position:chr13:6153903-6153584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):88, 21

               
               
               Conread position:320-632
               
               
               Cow position:chr13:43762047-43762360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):9, 136

               
               
               Conread position:320-632
               
               
               Cow position:chr13:43869232-43868923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):83, 21

               
               
               Conread position:320-645
               
               
               Cow position:chr13:56148401-56148748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:240
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):14, 22

               
               
               Conread position:320-645
               
               
               Cow position:chr13:56160566-56160219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:241
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):14, 22

               
               
               Conread position:321-632
               
               
               Cow position:chr13:11460514-11460820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):82, 123

               
               
               Conread position:321-632
               
               
               Cow position:chr13:50690517-50690197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:214
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):25, 31

               
               
               Conread position:323-582
               
               
               Cow position:chr13:49520938-49520677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):102, 27

               
               
               Conread position:323-615
               
               
               Cow position:chr13:20231306-20231022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):91, 26

               
               
               Conread position:323-620
               
               
               Cow position:chr13:11643823-11644116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):85, 26

               
               
               Conread position:323-628
               
               
               Cow position:chr13:21283820-21283515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:220
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):57, 18

               
               
               Conread position:323-628
               
               
               Cow position:chr13:28683246-28683550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):84, 18

               
               
               Conread position:323-630
               
               
               Cow position:chr13:21155602-21155296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):143, 18

               
               
               Conread position:323-631
               
               
               Cow position:chr13:12614137-12614454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):41, 26

               
               
               Conread position:323-631
               
               
               Cow position:chr13:37981860-37981558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):64, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr13:5713199-5713489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):134, 26

               
               
               Conread position:323-632
               
               
               Cow position:chr13:8652558-8652242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:227
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):85, 26

               
               
               Conread position:323-632
               
               
               Cow position:chr13:12547024-12546710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):123, 26

               
               
               Conread position:323-632
               
               
               Cow position:chr13:15282051-15281741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):72, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr13:36771536-36771230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:227
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):84, 18

               
               
               Conread position:323-645
               
               
               Cow position:chr13:11060871-11061195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:231
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):44, 26

               
               
               Conread position:324-632
               
               
               Cow position:chr13:26369409-26369721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:223
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):82, 15

               
               
               Conread position:324-632
               
               
               Cow position:chr13:37381686-37382005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):90, 17

               
               
               Conread position:325-619
               
               
               Cow position:chr13:23651330-23651614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):68, 8

               
               
               Conread position:325-624
               
               
               Cow position:chr13:12408403-12408096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):21, 14

               
               
               Conread position:325-630
               
               
               Cow position:chr13:15529151-15528835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:207
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):35, 10

               
               
               Conread position:325-631
               
               
               Cow position:chr13:20650101-20649789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:228
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):39, 24

               
               
               Conread position:326-632
               
               
               Cow position:chr13:39952527-39952217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:210
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):21, 15

               
               
               Conread position:327-632
               
               
               Cow position:chr13:25531902-25531593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 14

               
               
               Conread position:329-632
               
               
               Cow position:chr13:5658838-5658535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):20, 44

               
               
               Conread position:333-600
               
               
               Cow position:chr13:45725786-45726059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):45, 6

               
               
               Conread position:333-632
               
               
               Cow position:chr13:9643993-9643687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:224
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):66, 8

               
               
               Conread position:336-632
               
               
               Cow position:chr13:8201587-8201291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:213
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):68, 87

               
               
               Conread position:337-632
               
               
               Cow position:chr13:29630754-29631053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):77, 31

               
               
               Conread position:340-632
               
               
               Cow position:chr13:2413930-2414221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):68, 27

               
               
               Conread position:340-632
               
               
               Cow position:chr13:18243762-18244051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):68, 104

               
               
               Conread position:342-635
               
               
               Cow position:chr13:13306001-13306301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):63, 7

               
               
               Conread position:346-631
               
               
               Cow position:chr13:11955211-11954919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:203
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):37, 116

               
               
               Conread position:351-590
               
               
               Cow position:chr13:52929622-52929862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):55, 100

               
               
               Conread position:351-631
               
               
               Cow position:chr13:32950081-32949809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):54, 67

               
               
               Conread position:351-632
               
               
               Cow position:chr13:45604505-45604223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):63, 56

               
               
               Conread position:351-645
               
               
               Cow position:chr13:17613251-17613554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:211
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):42, 110

               
               
               Conread position:351-645
               
               
               Cow position:chr13:34941739-34941448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):54, 73

               
               
               Conread position:352-633
               
               
               Cow position:chr13:19138352-19138633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):62, 79

               
               
               Conread position:356-632
               
               
               Cow position:chr13:26383319-26383036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):58, 51

               
               
               Conread position:356-632
               
               
               Cow position:chr13:55316275-55315994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):41, 101

               
               
               Conread position:356-645
               
               
               Cow position:chr13:61166534-61166250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):59, 32

               
               
               Conread position:357-632
               
               
               Cow position:chr13:48037540-48037815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):38, 97

               
               
               Conread position:357-645
               
               
               Cow position:chr13:40651851-40652141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:196
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):48, 117

               
               
               Conread position:361-632
               
               
               Cow position:chr13:46181713-46181984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):45, 94

               
               
               Conread position:364-632
               
               
               Cow position:chr13:8839066-8838799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:186
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):42, 69

               
               
               Conread position:366-632
               
               
               Cow position:chr13:21039673-21039403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:195
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):60, 31

               
               
               Conread position:368-635
               
               
               Cow position:chr13:41253549-41253816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):39, 72

               
               
               Conread position:369-632
               
               
               Cow position:chr13:4463941-4464202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):174, 86

               
               
               Conread position:374-632
               
               
               Cow position:chr13:2463301-2463034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):27, 88

               
               
               Conread position:376-607
               
               
               Cow position:chr13:4420278-4420517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):32, 86

               
               
               Conread position:376-632
               
               
               Cow position:chr13:16024525-16024784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):38, 31

               
               
               Conread position:379-632
               
               
               Cow position:chr13:17800011-17800267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):23, 103

               
               
               Conread position:384-632
               
               
               Cow position:chr13:60329702-60329945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):124, 47

               
               
               Conread position:385-632
               
               
               Cow position:chr13:33517978-33517729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):44, 70

               
               
               Conread position:395-654
               
               
               Cow position:chr13:62474842-62474583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):27, 55

               
               
               Conread position:402-631
               
               
               Cow position:chr13:52879378-52879606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):141, 49

               
               
               Conread position:404-632
               
               
               Cow position:chr13:5752460-5752228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):94, 47

               
               
               Conread position:411-631
               
               
               Cow position:chr13:9548668-9548888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):48, 113

               
               
               Conread position:411-631
               
               
               Cow position:chr13:51108466-51108685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):91, 37

               
               
               Conread position:411-632
               
               
               Cow position:chr13:6975820-6975595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):55, 162

               
               
               Conread position:411-632
               
               
               Cow position:chr13:20041995-20041766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):35, 48

               
               
               Conread position:412-632
               
               
               Cow position:chr13:13265782-13265997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):77, 39

               
               
               Conread position:414-631
               
               
               Cow position:chr13:11147281-11147500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):91, 34

               
               
               Conread position:414-632
               
               
               Cow position:chr13:563165-562943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):84, 44

               
               
               Conread position:427-629
               
               
               Cow position:chr13:22277183-22276974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:441-632
               
               
               Cow position:chr13:20531142-20530946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):99, 12

               
               
               Conread position:442-631
               
               
               Cow position:chr13:21904669-21904856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):56, 13

               
               
               Conread position:443-632
               
               
               Cow position:chr13:37517131-37516941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:154
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):55, 11

               
               
               Conread position:446-636
               
               
               Cow position:chr13:50823543-50823354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):30, 5

               
               
               Conread position:446-645
               
               
               Cow position:chr13:1779835-1780041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):52, 12

               
               
               Conread position:448-632
               
               
               Cow position:chr13:60690718-60690527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:456-632
               
               
               Cow position:chr13:6607006-6606826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):42, 75

               
               
               Conread position:458-632
               
               
               Cow position:chr13:5091647-5091466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:458-632
               
               
               Cow position:chr13:54093763-54093935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):42, 98

               
               
               Conread position:458-645
               
               
               Cow position:chr13:61170702-61170507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:463-632
               
               
               Cow position:chr13:2339458-2339625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):80, 56

               
               
               Conread position:470-629
               
               
               Cow position:chr13:5079192-5079033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):24, 147

               
               
               Conread position:470-632
               
               
               Cow position:chr13:21209891-21210057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:470-632
               
               
               Cow position:chr13:27027744-27027573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:471-632
               
               
               Cow position:chr13:18551476-18551643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:471-632
               
               
               Cow position:chr13:25261778-25261613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):27, 40

               
               
               Conread position:471-632
               
               
               Cow position:chr13:60393669-60393504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:476-632
               
               
               Cow position:chr13:14544154-14544317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:477-625
               
               
               Cow position:chr13:22025671-22025521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:480-630
               
               
               Cow position:chr13:54237394-54237539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):16, 63

               
               
               Conread position:485-633
               
               
               Cow position:chr13:24155590-24155737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):9, 75

               
               
               Conread position:492-643
               
               
               Cow position:chr13:53566650-53566806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:493-629
               
               
               Cow position:chr13:6894149-6894286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):34, 90

               
               
               Conread position:493-630
               
               
               Cow position:chr13:547539-547681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):46, 110

               
               
               Conread position:493-630
               
               
               Cow position:chr13:12682489-12682348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:493-631
               
               
               Cow position:chr13:47356690-47356821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:493-632
               
               
               Cow position:chr13:15740119-15740264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:493-632
               
               
               Cow position:chr13:44322956-44323097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:493-632
               
               
               Cow position:chr13:46525390-46525247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:117
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):62, 113

               
               
               Conread position:493-645
               
               
               Cow position:chr13:1011381-1011540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:494-632
               
               
               Cow position:chr13:20706149-20706007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:112
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:494-632
               
               
               Cow position:chr13:37521323-37521185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:494-632
               
               
               Cow position:chr13:60436829-60436688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:495-607
               
               
               Cow position:chr13:7790073-7790184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:90
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:495-628
               
               
               Cow position:chr13:46458680-46458813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):19, 50

               
               
               Conread position:495-631
               
               
               Cow position:chr13:4037937-4038074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):43, 14

               
               
               Conread position:495-631
               
               
               Cow position:chr13:15172353-15172213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr13:3003499-3003642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr13:11290763-11290625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):19, 48

               
               
               Conread position:495-632
               
               
               Cow position:chr13:14927293-14927434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr13:16155664-16155522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr13:17815826-17815966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):95, 78

               
               
               Conread position:495-632
               
               
               Cow position:chr13:25062466-25062605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):91, 69

               
               
               Conread position:495-632
               
               
               Cow position:chr13:38484889-38485026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):44, 96

               
               
               Conread position:495-632
               
               
               Cow position:chr13:40943302-40943443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr13:55295565-55295430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):93, 78

               
               
               Conread position:495-645
               
               
               Cow position:chr13:9884826-9884976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):95, 23

               
               
               Conread position:495-645
               
               
               Cow position:chr13:37947945-37947803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):44, 74

               
               
               Conread position:495-645
               
               
               Cow position:chr13:38012413-38012569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:497-632
               
               
               Cow position:chr13:20684061-20683927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:103
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:499-645
               
               
               Cow position:chr13:34052540-34052393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:502-632
               
               
               Cow position:chr13:27985364-27985234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:503-646
               
               
               Cow position:chr13:33054330-33054183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):40, 125

               
               
               Conread position:505-627
               
               
               Cow position:chr13:33352295-33352177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:505-632
               
               
               Cow position:chr13:24376557-24376685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:506-637
               
               
               Cow position:chr13:30693774-30693900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):79, 57

               
               
               Conread position:507-632
               
               
               Cow position:chr13:43839482-43839350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:507-645
               
               
               Cow position:chr13:43812147-43812292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:509-632
               
               
               Cow position:chr13:21524497-21524624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:517-632
               
               
               Cow position:chr13:26098225-26098340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:94
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:535-632
               
               
               Cow position:chr13:21989007-21988911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:98
               
               
               Alignm identity:82
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:544-632
               
               
               Cow position:chr13:14576777-14576865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:89
               
               
               Alignm identity:77
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:189-451
               
               
               Cow position:chr14:10937466-10937743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:200
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):37, 16

               
               
               Conread position:196-632
               
               
               Cow position:chr14:24981261-24981707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:305
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):72, 32

               
               
               Conread position:200-630
               
               
               Cow position:chr14:28378167-28378615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 80

               
               
               Conread position:200-632
               
               
               Cow position:chr14:14466655-14466226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:304
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):14, 158

               
               
               Conread position:200-632
               
               
               Cow position:chr14:41809847-41809399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:296
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):29, 56

               
               
               Conread position:201-524
               
               
               Cow position:chr14:1778036-1777702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):26, 181

               
               
               Conread position:202-625
               
               
               Cow position:chr14:27355206-27355649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:297
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):14, 157

               
               
               Conread position:202-632
               
               
               Cow position:chr14:21691442-21691027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:277
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):206, 29

               
               
               Conread position:206-397
               
               
               Cow position:chr14:29282568-29282769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):16, 143

               
               
               Conread position:206-629
               
               
               Cow position:chr14:8541392-8540966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:292
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):22, 138

               
               
               Conread position:206-631
               
               
               Cow position:chr14:48689345-48689781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:293
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):116, 88

               
               
               Conread position:208-326
               
               
               Cow position:chr14:41755974-41756093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:96
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:209-326
               
               
               Cow position:chr14:27044967-27044852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):92, 22

               
               
               Conread position:210-425
               
               
               Cow position:chr14:29723760-29723549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):9, 94

               
               
               Conread position:210-632
               
               
               Cow position:chr14:39918914-39918510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:270
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):390, 29

               
               
               Conread position:210-653
               
               
               Cow position:chr14:12667549-12668005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:297
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):26, 58

               
               
               Conread position:211-404
               
               
               Cow position:chr14:1771138-1770940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):49, 143

               
               
               Conread position:211-406
               
               
               Cow position:chr14:15470164-15469959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):88, 183

               
               
               Conread position:211-406
               
               
               Cow position:chr14:33229578-33229379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):27, 16

               
               
               Conread position:212-568
               
               
               Cow position:chr14:4203270-4202905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:247
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):18, 44

               
               
               Conread position:212-632
               
               
               Cow position:chr14:6541904-6541468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:289
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):97, 164

               
               
               Conread position:212-632
               
               
               Cow position:chr14:18345902-18345477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 89

               
               
               Conread position:212-632
               
               
               Cow position:chr14:26442525-26442085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:284
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):11, 271

               
               
               Conread position:213-388
               
               
               Cow position:chr14:31342033-31342217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):115, 146

               
               
               Conread position:213-418
               
               
               Cow position:chr14:15428302-15428513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):79, 200

               
               
               Conread position:213-621
               
               
               Cow position:chr14:47252409-47251980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:273
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):104, 205

               
               
               Conread position:213-632
               
               
               Cow position:chr14:38144286-38143860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 15

               
               
               Conread position:214-537
               
               
               Cow position:chr14:23424090-23424414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:228
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):101, 78

               
               
               Conread position:214-537
               
               
               Cow position:chr14:23442849-23443175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:231
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):14, 80

               
               
               Conread position:214-556
               
               
               Cow position:chr14:33341575-33341934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:245
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):33, 16

               
               
               Conread position:214-565
               
               
               Cow position:chr14:12512065-12511714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:242
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):93, 16

               
               
               Conread position:214-621
               
               
               Cow position:chr14:49022051-49021657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:280
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):189, 18

               
               
               Conread position:214-632
               
               
               Cow position:chr14:13845818-13846239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:290
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):24, 43

               
               
               Conread position:214-632
               
               
               Cow position:chr14:35420938-35420504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 72

               
               
               Conread position:214-632
               
               
               Cow position:chr14:42155141-42154708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 18

               
               
               Conread position:215-326
               
               
               Cow position:chr14:19988235-19988125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:90
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:215-405
               
               
               Cow position:chr14:33468610-33468792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):22, 50

               
               
               Conread position:215-421
               
               
               Cow position:chr14:19832565-19832353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):89, 16

               
               
               Conread position:215-421
               
               
               Cow position:chr14:48829910-48829701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):98, 60

               
               
               Conread position:215-424
               
               
               Cow position:chr14:18270182-18270400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):19, 137

               
               
               Conread position:215-615
               
               
               Cow position:chr14:13809778-13810170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 86

               
               
               Conread position:215-624
               
               
               Cow position:chr14:48447339-48446915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:277
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):111, 144

               
               
               Conread position:215-632
               
               
               Cow position:chr14:109655-109240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:268
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):17, 80

               
               
               Conread position:215-632
               
               
               Cow position:chr14:5835756-5836153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:281
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:215-632
               
               
               Cow position:chr14:6600128-6599701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:287
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):24, 129

               
               
               Conread position:215-632
               
               
               Cow position:chr14:16237684-16237253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 64

               
               
               Conread position:215-632
               
               
               Cow position:chr14:37103031-37103463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:293
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):22, 140

               
               
               Conread position:215-632
               
               
               Cow position:chr14:41210690-41211109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:279
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):180, 78

               
               
               Conread position:215-645
               
               
               Cow position:chr14:28304962-28304520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 133

               
               
               Conread position:216-383
               
               
               Cow position:chr14:45955113-45955291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):18, 144

               
               
               Conread position:216-412
               
               
               Cow position:chr14:24428876-24428679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):91, 16

               
               
               Conread position:216-420
               
               
               Cow position:chr14:35651952-35651748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):97, 21

               
               
               Conread position:216-434
               
               
               Cow position:chr14:18559228-18559005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):97, 15

               
               
               Conread position:216-451
               
               
               Cow position:chr14:12073129-12072887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):100, 141

               
               
               Conread position:216-562
               
               
               Cow position:chr14:33457219-33456858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:242
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):21, 132

               
               
               Conread position:216-584
               
               
               Cow position:chr14:16256600-16256970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:246
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):21, 91

               
               
               Conread position:216-620
               
               
               Cow position:chr14:20110892-20110479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 13

               
               
               Conread position:216-625
               
               
               Cow position:chr14:23090553-23090132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:277
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):82, 12

               
               
               Conread position:216-628
               
               
               Cow position:chr14:27919909-27919489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:287
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):22, 143

               
               
               Conread position:216-629
               
               
               Cow position:chr14:19618914-19618516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:287
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):88, 12

               
               
               Conread position:216-629
               
               
               Cow position:chr14:23682094-23682514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:277
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):104, 193

               
               
               Conread position:216-632
               
               
               Cow position:chr14:20932449-20932871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 37

               
               
               Conread position:216-632
               
               
               Cow position:chr14:45677058-45677476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:274
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):75, 273

               
               
               Conread position:216-645
               
               
               Cow position:chr14:24921922-24922372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 136

               
               
               Conread position:217-386
               
               
               Cow position:chr14:12071699-12071521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):107, 142

               
               
               Conread position:217-397
               
               
               Cow position:chr14:36559399-36559212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):20, 55

               
               
               Conread position:217-405
               
               
               Cow position:chr14:11472403-11472206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):18, 11

               
               
               Conread position:217-424
               
               
               Cow position:chr14:35421260-35421041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):20, 135

               
               
               Conread position:217-451
               
               
               Cow position:chr14:12081299-12081062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:170
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):17, 90

               
               
               Conread position:217-538
               
               
               Cow position:chr14:15944840-15944511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):19, 129

               
               
               Conread position:217-584
               
               
               Cow position:chr14:15997924-15997563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:250
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):26, 83

               
               
               Conread position:217-627
               
               
               Cow position:chr14:26115886-26116311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 144

               
               
               Conread position:217-630
               
               
               Cow position:chr14:31130551-31130138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:293
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):22, 135

               
               
               Conread position:217-631
               
               
               Cow position:chr14:12244555-12244130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:285
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):14, 128

               
               
               Conread position:217-632
               
               
               Cow position:chr14:13006352-13006759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:283
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):189, 110

               
               
               Conread position:217-632
               
               
               Cow position:chr14:20010484-20010058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:281
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):109, 14

               
               
               Conread position:217-632
               
               
               Cow position:chr14:20640800-20640371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:277
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):103, 15

               
               
               Conread position:217-632
               
               
               Cow position:chr14:33774197-33773798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:288
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):13, 61

               
               
               Conread position:217-632
               
               
               Cow position:chr14:40230809-40230384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 51

               
               
               Conread position:217-632
               
               
               Cow position:chr14:48492975-48492531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:295
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):14, 147

               
               
               Conread position:217-645
               
               
               Cow position:chr14:38168532-38168949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 82

               
               
               Conread position:217-646
               
               
               Cow position:chr14:17554665-17554215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:292
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):20, 138

               
               
               Conread position:218-324
               
               
               Cow position:chr14:29011218-29011111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:87
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:218-326
               
               
               Cow position:chr14:30050118-30050011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:88
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:218-377
               
               
               Cow position:chr14:15796094-15795926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):101, 141

               
               
               Conread position:218-385
               
               
               Cow position:chr14:40107284-40107113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):19, 121

               
               
               Conread position:218-389
               
               
               Cow position:chr14:21593174-21592997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):21, 34

               
               
               Conread position:218-405
               
               
               Cow position:chr14:11079283-11079474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):18, 97

               
               
               Conread position:218-414
               
               
               Cow position:chr14:20245340-20245136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):18, 129

               
               
               Conread position:218-416
               
               
               Cow position:chr14:4481504-4481703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):89, 14

               
               
               Conread position:218-418
               
               
               Cow position:chr14:36425576-36425370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):13, 127

               
               
               Conread position:218-420
               
               
               Cow position:chr14:23005504-23005708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):17, 189

               
               
               Conread position:218-420
               
               
               Cow position:chr14:27364406-27364614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):103, 128

               
               
               Conread position:218-436
               
               
               Cow position:chr14:23419624-23419855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):85, 13

               
               
               Conread position:218-451
               
               
               Cow position:chr14:7198327-7198570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):110, 13

               
               
               Conread position:218-488
               
               
               Cow position:chr14:23104167-23103890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):91, 136

               
               
               Conread position:218-530
               
               
               Cow position:chr14:11470323-11469998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:231
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):18, 133

               
               
               Conread position:218-577
               
               
               Cow position:chr14:4877399-4877034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:243
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):20, 234

               
               
               Conread position:218-616
               
               
               Cow position:chr14:14949384-14948973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:273
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):96, 19

               
               
               Conread position:218-632
               
               
               Cow position:chr14:10609510-10609942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:304
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):103, 11

               
               
               Conread position:218-632
               
               
               Cow position:chr14:12036997-12036589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:277
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):280, 10

               
               
               Conread position:218-632
               
               
               Cow position:chr14:36555298-36554899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:288
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):116, 12

               
               
               Conread position:218-632
               
               
               Cow position:chr14:39770390-39769977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:276
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):51, 14

               
               
               Conread position:219-389
               
               
               Cow position:chr14:8949483-8949656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):84, 12

               
               
               Conread position:219-631
               
               
               Cow position:chr14:14327293-14326852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:298
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):91, 12

               
               
               Conread position:219-632
               
               
               Cow position:chr14:18941458-18941051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 158

               
               
               Conread position:219-632
               
               
               Cow position:chr14:28987519-28987945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:295
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):96, 193

               
               
               Conread position:219-645
               
               
               Cow position:chr14:20016883-20016441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:304
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):14, 143

               
               
               Conread position:220-542
               
               
               Cow position:chr14:26655305-26654969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:232
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):99, 8

               
               
               Conread position:220-595
               
               
               Cow position:chr14:38747512-38747878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:257
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):85, 11

               
               
               Conread position:220-597
               
               
               Cow position:chr14:25986343-25986738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:275
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):99, 141

               
               
               Conread position:220-605
               
               
               Cow position:chr14:25979101-25979493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:257
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):98, 139

               
               
               Conread position:220-632
               
               
               Cow position:chr14:10858272-10858684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):183, 12

               
               
               Conread position:220-632
               
               
               Cow position:chr14:20667174-20666768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:278
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):101, 163

               
               
               Conread position:221-389
               
               
               Cow position:chr14:25912485-25912657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):9, 94

               
               
               Conread position:221-624
               
               
               Cow position:chr14:50362625-50363050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 9

               
               
               Conread position:222-405
               
               
               Cow position:chr14:23465220-23465027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):16, 49

               
               
               Conread position:223-420
               
               
               Cow position:chr14:7127694-7127895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):90, 118

               
               
               Conread position:224-632
               
               
               Cow position:chr14:5222451-5222034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:287
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):12, 97

               
               
               Conread position:225-458
               
               
               Cow position:chr14:20466771-20467009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):13, 124

               
               
               Conread position:226-632
               
               
               Cow position:chr14:8786703-8786296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 75

               
               
               Conread position:227-597
               
               
               Cow position:chr14:2975248-2974878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 124

               
               
               Conread position:227-632
               
               
               Cow position:chr14:36437652-36437233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:285
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):9, 127

               
               
               Conread position:227-632
               
               
               Cow position:chr14:38355046-38355435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:276
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):212, 60

               
               
               Conread position:227-632
               
               
               Cow position:chr14:45052276-45052691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:290
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):90, 134

               
               
               Conread position:228-405
               
               
               Cow position:chr14:23078953-23078770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):93, 119

               
               
               Conread position:228-420
               
               
               Cow position:chr14:145672-145474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):35, 68

               
               
               Conread position:228-421
               
               
               Cow position:chr14:8083034-8083237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):8, 122

               
               
               Conread position:228-425
               
               
               Cow position:chr14:30023362-30023158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):9, 134

               
               
               Conread position:228-539
               
               
               Cow position:chr14:49817847-49817542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):86, 128

               
               
               Conread position:228-590
               
               
               Cow position:chr14:7799756-7800125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):79, 38

               
               
               Conread position:228-618
               
               
               Cow position:chr14:24236661-24237064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 239

               
               
               Conread position:228-631
               
               
               Cow position:chr14:35381426-35381840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 125

               
               
               Conread position:228-632
               
               
               Cow position:chr14:6490865-6490451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 136

               
               
               Conread position:228-632
               
               
               Cow position:chr14:11043656-11043237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:284
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):7, 134

               
               
               Conread position:228-632
               
               
               Cow position:chr14:11508400-11507990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:280
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):8, 132

               
               
               Conread position:228-632
               
               
               Cow position:chr14:12961436-12961821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:268
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):8, 88

               
               
               Conread position:228-632
               
               
               Cow position:chr14:13385204-13385626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 122

               
               
               Conread position:228-632
               
               
               Cow position:chr14:20712844-20712429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:282
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):8, 124

               
               
               Conread position:228-632
               
               
               Cow position:chr14:41749917-41749510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:275
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):85, 179

               
               
               Conread position:231-632
               
               
               Cow position:chr14:21357399-21357805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 171

               
               
               Conread position:232-410
               
               
               Cow position:chr14:41267880-41267705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:232-420
               
               
               Cow position:chr14:50519334-50519142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):88, 27

               
               
               Conread position:232-454
               
               
               Cow position:chr14:49940856-49941083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):81, 122

               
               
               Conread position:232-495
               
               
               Cow position:chr14:36443174-36442904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):73, 114

               
               
               Conread position:232-531
               
               
               Cow position:chr14:37422930-37422637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):181, 74

               
               
               Conread position:232-540
               
               
               Cow position:chr14:35503206-35503524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:230
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):77, 112

               
               
               Conread position:232-562
               
               
               Cow position:chr14:44084633-44084297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:235
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):171, 60

               
               
               Conread position:232-580
               
               
               Cow position:chr14:36289949-36289600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 98

               
               
               Conread position:232-600
               
               
               Cow position:chr14:48741023-48740657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:254
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):103, 27

               
               
               Conread position:232-612
               
               
               Cow position:chr14:19852093-19851695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:274
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):75, 128

               
               
               Conread position:232-618
               
               
               Cow position:chr14:1803276-1802873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:286
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):96, 45

               
               
               Conread position:232-624
               
               
               Cow position:chr14:38529822-38530210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:266
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):81, 54

               
               
               Conread position:232-626
               
               
               Cow position:chr14:9019884-9020274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:282
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):182, 60

               
               
               Conread position:232-627
               
               
               Cow position:chr14:26620465-26620867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:262
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):105, 185

               
               
               Conread position:232-629
               
               
               Cow position:chr14:21017978-21018362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:258
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):219, 9

               
               
               Conread position:232-631
               
               
               Cow position:chr14:42330189-42330606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:284
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):71, 266

               
               
               Conread position:232-632
               
               
               Cow position:chr14:6736025-6735613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:281
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):28, 51

               
               
               Conread position:232-632
               
               
               Cow position:chr14:14622325-14621932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:276
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):193, 74

               
               
               Conread position:232-632
               
               
               Cow position:chr14:14979865-14979450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:272
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):31, 122

               
               
               Conread position:232-632
               
               
               Cow position:chr14:21284496-21284883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:276
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):266, 61

               
               
               Conread position:232-632
               
               
               Cow position:chr14:33791036-33791442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:267
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):89, 120

               
               
               Conread position:232-632
               
               
               Cow position:chr14:38920800-38921191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:269
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):36, 98

               
               
               Conread position:232-633
               
               
               Cow position:chr14:37679141-37678744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:276
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):176, 60

               
               
               Conread position:232-645
               
               
               Cow position:chr14:22988878-22989300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 180

               
               
               Conread position:232-645
               
               
               Cow position:chr14:32452094-32452522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 121

               
               
               Conread position:232-646
               
               
               Cow position:chr14:15518560-15518107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:305
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):87, 127

               
               
               Conread position:233-452
               
               
               Cow position:chr14:45312640-45312865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):86, 59

               
               
               Conread position:233-545
               
               
               Cow position:chr14:40754400-40754079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 111

               
               
               Conread position:233-632
               
               
               Cow position:chr14:28115347-28114930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 111

               
               
               Conread position:234-326
               
               
               Cow position:chr14:7386708-7386616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:93
               
               
               Alignm identity:78
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:234-455
               
               
               Cow position:chr14:12884109-12884331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):85, 110

               
               
               Conread position:235-645
               
               
               Cow position:chr14:22381705-22381289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:280
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):88, 12

               
               
               Conread position:236-532
               
               
               Cow position:chr14:12954528-12954231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):167, 83

               
               
               Conread position:236-622
               
               
               Cow position:chr14:16352205-16352565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:255
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):307, 78

               
               
               Conread position:236-629
               
               
               Cow position:chr14:39037086-39037479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:280
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):178, 62

               
               
               Conread position:236-632
               
               
               Cow position:chr14:18309453-18309057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 104

               
               
               Conread position:236-632
               
               
               Cow position:chr14:34200012-34199589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:295
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):54, 193

               
               
               Conread position:236-632
               
               
               Cow position:chr14:47673032-47672630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:280
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):11, 110

               
               
               Conread position:237-631
               
               
               Cow position:chr14:48426920-48427328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 213

               
               
               Conread position:238-538
               
               
               Cow position:chr14:30756690-30757000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):87, 122

               
               
               Conread position:240-537
               
               
               Cow position:chr14:46997903-46998202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:197
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):168, 53

               
               
               Conread position:242-502
               
               
               Cow position:chr14:1796050-1796312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):68, 29

               
               
               Conread position:242-617
               
               
               Cow position:chr14:25001885-25002274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):53, 217

               
               
               Conread position:242-624
               
               
               Cow position:chr14:14182204-14182587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:256
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):40, 100

               
               
               Conread position:242-628
               
               
               Cow position:chr14:24387303-24387700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 22

               
               
               Conread position:242-632
               
               
               Cow position:chr14:5630021-5630414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 213

               
               
               Conread position:242-632
               
               
               Cow position:chr14:19594282-19593887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:279
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):79, 104

               
               
               Conread position:242-632
               
               
               Cow position:chr14:50589537-50589137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:276
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):131, 22

               
               
               Conread position:243-632
               
               
               Cow position:chr14:33247566-33247185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 63

               
               
               Conread position:243-632
               
               
               Cow position:chr14:48496293-48495893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:269
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):52, 118

               
               
               Conread position:244-632
               
               
               Cow position:chr14:34083294-34082902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:261
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):158, 51

               
               
               Conread position:245-632
               
               
               Cow position:chr14:8101653-8102031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:267
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):50, 99

               
               
               Conread position:246-624
               
               
               Cow position:chr14:26941364-26940978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:261
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):72, 111

               
               
               Conread position:246-624
               
               
               Cow position:chr14:49670917-49671309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:251
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):52, 107

               
               
               Conread position:246-630
               
               
               Cow position:chr14:7959655-7960016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:272
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):176, 53

               
               
               Conread position:246-632
               
               
               Cow position:chr14:26433392-26432988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:263
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):47, 238

               
               
               Conread position:246-632
               
               
               Cow position:chr14:27848036-27848453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:274
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):53, 25

               
               
               Conread position:246-632
               
               
               Cow position:chr14:40165286-40165674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:266
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):49, 15

               
               
               Conread position:247-507
               
               
               Cow position:chr14:12127539-12127285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):192, 59

               
               
               Conread position:247-617
               
               
               Cow position:chr14:12520446-12520071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:264
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):56, 111

               
               
               Conread position:247-632
               
               
               Cow position:chr14:23712553-23712939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:260
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):174, 69

               
               
               Conread position:248-631
               
               
               Cow position:chr14:1646325-1645937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:263
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):64, 23

               
               
               Conread position:248-632
               
               
               Cow position:chr14:39434395-39434009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:274
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):61, 92

               
               
               Conread position:248-633
               
               
               Cow position:chr14:17755435-17755812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:275
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):65, 27

               
               
               Conread position:249-632
               
               
               Cow position:chr14:18904728-18904355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 46

               
               
               Conread position:250-632
               
               
               Cow position:chr14:44742511-44742128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:255
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):127, 76

               
               
               Conread position:251-632
               
               
               Cow position:chr14:14187207-14187586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:268
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):156, 10

               
               
               Conread position:253-632
               
               
               Cow position:chr14:7695127-7695503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:250
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):73, 215

               
               
               Conread position:261-412
               
               
               Cow position:chr14:12617622-12617471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):52, 90

               
               
               Conread position:262-630
               
               
               Cow position:chr14:41127779-41128144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:262
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):65, 83

               
               
               Conread position:266-627
               
               
               Cow position:chr14:27305026-27305404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:240
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):79, 185

               
               
               Conread position:268-632
               
               
               Cow position:chr14:106683-106322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:248
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):45, 77

               
               
               Conread position:271-632
               
               
               Cow position:chr14:19188932-19189292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:240
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):181, 151

               
               
               Conread position:271-632
               
               
               Cow position:chr14:41479781-41479406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:255
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):56, 38

               
               
               Conread position:293-632
               
               
               Cow position:chr14:37884498-37884158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:226
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):129, 20

               
               
               Conread position:295-631
               
               
               Cow position:chr14:30661913-30662239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):202, 38

               
               
               Conread position:297-613
               
               
               Cow position:chr14:26490835-26490510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):17, 50

               
               
               Conread position:298-632
               
               
               Cow position:chr14:37131568-37131911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):48, 39

               
               
               Conread position:298-632
               
               
               Cow position:chr14:38338217-38337891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):116, 37

               
               
               Conread position:298-633
               
               
               Cow position:chr14:37884000-37883665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:228
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):109, 45

               
               
               Conread position:299-624
               
               
               Cow position:chr14:8749992-8750319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):21, 76

               
               
               Conread position:299-631
               
               
               Cow position:chr14:26097780-26097435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:232
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):14, 46

               
               
               Conread position:299-632
               
               
               Cow position:chr14:22583066-22583392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):22, 45

               
               
               Conread position:299-632
               
               
               Cow position:chr14:25779018-25779347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:231
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):35, 43

               
               
               Conread position:299-632
               
               
               Cow position:chr14:36709043-36709376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:230
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):109, 31

               
               
               Conread position:299-632
               
               
               Cow position:chr14:45605015-45605343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):151, 44

               
               
               Conread position:300-645
               
               
               Cow position:chr14:34355791-34355436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:242
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):89, 13

               
               
               Conread position:301-632
               
               
               Cow position:chr14:37155797-37156121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):105, 19

               
               
               Conread position:305-632
               
               
               Cow position:chr14:17841368-17841034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:234
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):101, 36

               
               
               Conread position:305-632
               
               
               Cow position:chr14:33309580-33309256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):29, 15

               
               
               Conread position:317-632
               
               
               Cow position:chr14:39778687-39779006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):91, 30

               
               
               Conread position:318-632
               
               
               Cow position:chr14:25403999-25403691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:225
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):96, 23

               
               
               Conread position:319-632
               
               
               Cow position:chr14:9308166-9308478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):103, 88

               
               
               Conread position:319-632
               
               
               Cow position:chr14:15055055-15054733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):83, 133

               
               
               Conread position:319-632
               
               
               Cow position:chr14:16834258-16834583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):84, 131

               
               
               Conread position:319-632
               
               
               Cow position:chr14:34983803-34984117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:218
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):56, 107

               
               
               Conread position:319-632
               
               
               Cow position:chr14:35018817-35018503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:225
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):31, 26

               
               
               Conread position:319-647
               
               
               Cow position:chr14:20385049-20384716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):16, 23

               
               
               Conread position:320-594
               
               
               Cow position:chr14:33830239-33830511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):178, 74

               
               
               Conread position:320-632
               
               
               Cow position:chr14:9901121-9901423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):15, 22

               
               
               Conread position:320-632
               
               
               Cow position:chr14:19372276-19372596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:214
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):32, 24

               
               
               Conread position:320-632
               
               
               Cow position:chr14:19863497-19863187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:213
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):14, 137

               
               
               Conread position:320-632
               
               
               Cow position:chr14:20600322-20600634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:218
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):39, 129

               
               
               Conread position:320-632
               
               
               Cow position:chr14:48412945-48412624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):14, 24

               
               
               Conread position:321-630
               
               
               Cow position:chr14:29632943-29632632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:203
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):73, 25

               
               
               Conread position:321-631
               
               
               Cow position:chr14:27592018-27591703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):101, 50

               
               
               Conread position:322-633
               
               
               Cow position:chr14:39926148-39926445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):87, 19

               
               
               Conread position:323-595
               
               
               Cow position:chr14:19394304-19394575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):91, 26

               
               
               Conread position:323-608
               
               
               Cow position:chr14:44257864-44258156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):82, 28

               
               
               Conread position:323-629
               
               
               Cow position:chr14:39618435-39618126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):84, 26

               
               
               Conread position:323-632
               
               
               Cow position:chr14:4109549-4109221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:232
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):23, 29

               
               
               Conread position:323-632
               
               
               Cow position:chr14:19129447-19129764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 26

               
               
               Conread position:323-632
               
               
               Cow position:chr14:21964078-21964373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:213
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):177, 20

               
               
               Conread position:323-632
               
               
               Cow position:chr14:40033936-40034223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:212
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):60, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr14:49086248-49086558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):92, 26

               
               
               Conread position:324-631
               
               
               Cow position:chr14:10697560-10697274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):98, 27

               
               
               Conread position:325-645
               
               
               Cow position:chr14:18657664-18657333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:224
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):80, 24

               
               
               Conread position:325-670
               
               
               Cow position:chr14:28003911-28004276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:247
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):83, 24

               
               
               Conread position:329-627
               
               
               Cow position:chr14:44793858-44794156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):79, 29

               
               
               Conread position:330-645
               
               
               Cow position:chr14:42784911-42785205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):13, 18

               
               
               Conread position:333-632
               
               
               Cow position:chr14:9837943-9837639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):71, 89

               
               
               Conread position:337-631
               
               
               Cow position:chr14:24796479-24796172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:341-632
               
               
               Cow position:chr14:18449050-18448756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):90, 26

               
               
               Conread position:346-629
               
               
               Cow position:chr14:3564247-3564525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):68, 61

               
               
               Conread position:346-632
               
               
               Cow position:chr14:15913576-15913298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):152, 61

               
               
               Conread position:350-632
               
               
               Cow position:chr14:43249555-43249838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):64, 57

               
               
               Conread position:351-629
               
               
               Cow position:chr14:20468127-20467854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):147, 71

               
               
               Conread position:351-632
               
               
               Cow position:chr14:22966723-22967005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):63, 56

               
               
               Conread position:352-631
               
               
               Cow position:chr14:29029798-29030080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):56, 32

               
               
               Conread position:352-632
               
               
               Cow position:chr14:38378985-38379274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):54, 77

               
               
               Conread position:356-629
               
               
               Cow position:chr14:11615248-11614971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):58, 51

               
               
               Conread position:357-632
               
               
               Cow position:chr14:28795646-28795929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):57, 50

               
               
               Conread position:358-632
               
               
               Cow position:chr14:31784939-31785229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):50, 75

               
               
               Conread position:359-632
               
               
               Cow position:chr14:17238328-17238615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):49, 115

               
               
               Conread position:359-632
               
               
               Cow position:chr14:34221035-34221307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):60, 19

               
               
               Conread position:362-631
               
               
               Cow position:chr14:25231672-25231397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):5, 91

               
               
               Conread position:367-629
               
               
               Cow position:chr14:25362328-25362597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):40, 71

               
               
               Conread position:373-632
               
               
               Cow position:chr14:15032746-15033008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):21, 14

               
               
               Conread position:374-626
               
               
               Cow position:chr14:33643785-33643544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):35, 39

               
               
               Conread position:376-618
               
               
               Cow position:chr14:12324412-12324663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):29, 68

               
               
               Conread position:378-630
               
               
               Cow position:chr14:7558445-7558180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):30, 7

               
               
               Conread position:379-627
               
               
               Cow position:chr14:27362036-27362292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):29, 81

               
               
               Conread position:379-632
               
               
               Cow position:chr14:33326399-33326141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):29, 76

               
               
               Conread position:382-632
               
               
               Cow position:chr14:6175586-6175836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:183
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):32, 13

               
               
               Conread position:393-632
               
               
               Cow position:chr14:38296272-38296023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):12, 80

               
               
               Conread position:394-629
               
               
               Cow position:chr14:35047586-35047824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):15, 49

               
               
               Conread position:394-632
               
               
               Cow position:chr14:8754334-8754579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):48, 179

               
               
               Conread position:406-644
               
               
               Cow position:chr14:35266986-35266746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):128, 40

               
               
               Conread position:410-632
               
               
               Cow position:chr14:11748879-11748668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):133, 43

               
               
               Conread position:410-632
               
               
               Cow position:chr14:11981668-11981906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:411-612
               
               
               Cow position:chr14:37435271-37435063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):28, 50

               
               
               Conread position:411-632
               
               
               Cow position:chr14:24991854-24992065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):87, 47

               
               
               Conread position:411-632
               
               
               Cow position:chr14:27312455-27312677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):60, 40

               
               
               Conread position:412-632
               
               
               Cow position:chr14:19221911-19222134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):86, 211

               
               
               Conread position:414-645
               
               
               Cow position:chr14:23464781-23464549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):91, 41

               
               
               Conread position:431-631
               
               
               Cow position:chr14:46490215-46490003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:431-632
               
               
               Cow position:chr14:3878505-3878705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):112, 54

               
               
               Conread position:432-631
               
               
               Cow position:chr14:41756309-41756511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):66, 157

               
               
               Conread position:442-632
               
               
               Cow position:chr14:26448810-26449001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):47, 16

               
               
               Conread position:442-632
               
               
               Cow position:chr14:34163812-34163622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):58, 69

               
               
               Conread position:443-631
               
               
               Cow position:chr14:24797513-24797325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):9, 16

               
               
               Conread position:445-645
               
               
               Cow position:chr14:33209286-33209093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):21, 6

               
               
               Conread position:455-619
               
               
               Cow position:chr14:22952921-22952758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):34, 117

               
               
               Conread position:455-632
               
               
               Cow position:chr14:7270936-7270763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):11, 65

               
               
               Conread position:455-632
               
               
               Cow position:chr14:8964621-8964796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):131, 54

               
               
               Conread position:458-632
               
               
               Cow position:chr14:19624161-19624343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:463-632
               
               
               Cow position:chr14:10912884-10912720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:463-632
               
               
               Cow position:chr14:12614013-12613849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):24, 127

               
               
               Conread position:463-632
               
               
               Cow position:chr14:33538842-33538673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):29, 111

               
               
               Conread position:467-626
               
               
               Cow position:chr14:42918174-42918337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:470-628
               
               
               Cow position:chr14:12484212-12484054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):28, 78

               
               
               Conread position:470-633
               
               
               Cow position:chr14:44383116-44382945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:471-632
               
               
               Cow position:chr14:46735393-46735565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:471-645
               
               
               Cow position:chr14:41190787-41190614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):46, 114

               
               
               Conread position:475-632
               
               
               Cow position:chr14:24581018-24581177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:476-632
               
               
               Cow position:chr14:5502068-5501899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:476-632
               
               
               Cow position:chr14:7316921-7317089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:476-632
               
               
               Cow position:chr14:46965653-46965812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:477-632
               
               
               Cow position:chr14:12856696-12856849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:477-635
               
               
               Cow position:chr14:8784279-8784435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:479-632
               
               
               Cow position:chr14:16310809-16310652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:481-632
               
               
               Cow position:chr14:11641471-11641322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):17, 84

               
               
               Conread position:481-632
               
               
               Cow position:chr14:24893855-24894013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:481-632
               
               
               Cow position:chr14:35651106-35650953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):8, 51

               
               
               Conread position:493-632
               
               
               Cow position:chr14:24786054-24786186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:493-645
               
               
               Cow position:chr14:34020799-34020956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:494-632
               
               
               Cow position:chr14:30926816-30926957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):89, 107

               
               
               Conread position:494-633
               
               
               Cow position:chr14:43193172-43193313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):93, 45

               
               
               Conread position:495-630
               
               
               Cow position:chr14:27791642-27791781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr14:6234154-6234010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:110
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr14:8495267-8495407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr14:11820008-11819871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:105
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr14:12250082-12249943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):41, 76

               
               
               Conread position:495-632
               
               
               Cow position:chr14:19633294-19633435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr14:19996431-19996571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr14:25695495-25695633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):48, 97

               
               
               Conread position:495-632
               
               
               Cow position:chr14:26470742-26470882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr14:28090861-28090719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr14:37640350-37640485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr14:39518809-39518949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):48, 69

               
               
               Conread position:495-632
               
               
               Cow position:chr14:40433035-40433174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):88, 74

               
               
               Conread position:495-633
               
               
               Cow position:chr14:33462274-33462413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):89, 47

               
               
               Conread position:495-633
               
               
               Cow position:chr14:44237591-44237446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:495-635
               
               
               Cow position:chr14:24840061-24839919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:497-632
               
               
               Cow position:chr14:27866021-27865879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:498-632
               
               
               Cow position:chr14:45068973-45068834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:500-632
               
               
               Cow position:chr14:34096471-34096342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:501-611
               
               
               Cow position:chr14:28924506-28924617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:91
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:502-632
               
               
               Cow position:chr14:21534913-21534787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:103
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:503-632
               
               
               Cow position:chr14:17397481-17397352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:101
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:507-629
               
               
               Cow position:chr14:26960312-26960189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:96
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:510-645
               
               
               Cow position:chr14:29300236-29300099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):31, 57

               
               
               Conread position:535-632
               
               
               Cow position:chr14:19513220-19513124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:98
               
               
               Alignm identity:86
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:197-421
               
               
               Cow position:chr15:52791793-52792022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):19, 126

               
               
               Conread position:197-554
               
               
               Cow position:chr15:10231887-10231521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):209, 33

               
               
               Conread position:197-632
               
               
               Cow position:chr15:35641865-35642319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 164

               
               
               Conread position:199-421
               
               
               Cow position:chr15:21710254-21710020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):17, 54

               
               
               Conread position:202-632
               
               
               Cow position:chr15:12785288-12785735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:303
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):117, 28

               
               
               Conread position:205-632
               
               
               Cow position:chr15:18017790-18018211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:285
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):76, 145

               
               
               Conread position:205-633
               
               
               Cow position:chr15:14505305-14505726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:298
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):39, 53

               
               
               Conread position:206-636
               
               
               Cow position:chr15:24797934-24797510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 34

               
               
               Conread position:207-428
               
               
               Cow position:chr15:39474070-39473839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):14, 26

               
               
               Conread position:207-632
               
               
               Cow position:chr15:23798660-23798221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 108

               
               
               Conread position:208-633
               
               
               Cow position:chr15:38394287-38394720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:289
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):22, 157

               
               
               Conread position:209-620
               
               
               Cow position:chr15:41125690-41125280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:261
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):148, 54

               
               
               Conread position:209-632
               
               
               Cow position:chr15:11658716-11658266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:305
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):94, 172

               
               
               Conread position:209-632
               
               
               Cow position:chr15:37381493-37381930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 148

               
               
               Conread position:209-632
               
               
               Cow position:chr15:43914226-43913785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:300
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):116, 17

               
               
               Conread position:210-305
               
               
               Cow position:chr15:22093189-22093285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:97
               
               
               Alignm identity:82
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:210-630
               
               
               Cow position:chr15:47844217-47843810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:283
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):105, 18

               
               
               Conread position:210-635
               
               
               Cow position:chr15:24411304-24411705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:278
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):11, 92

               
               
               Conread position:211-313
               
               
               Cow position:chr15:33729754-33729856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:86
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:211-326
               
               
               Cow position:chr15:20649435-20649549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:92
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:211-624
               
               
               Cow position:chr15:21608857-21608440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:279
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):16, 152

               
               
               Conread position:211-632
               
               
               Cow position:chr15:4138005-4138436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 17

               
               
               Conread position:211-632
               
               
               Cow position:chr15:32226992-32226587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:279
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):19, 49

               
               
               Conread position:211-632
               
               
               Cow position:chr15:50957938-50957496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:315
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):84, 19

               
               
               Conread position:212-314
               
               
               Cow position:chr15:10737911-10737808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:88
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:212-413
               
               
               Cow position:chr15:48052728-48052528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):101, 51

               
               
               Conread position:212-627
               
               
               Cow position:chr15:38161869-38162302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:287
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):25, 55

               
               
               Conread position:212-632
               
               
               Cow position:chr15:19771009-19771423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 19

               
               
               Conread position:212-643
               
               
               Cow position:chr15:21907813-21908247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:276
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):23, 41

               
               
               Conread position:213-449
               
               
               Cow position:chr15:38652732-38652484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):106, 133

               
               
               Conread position:213-580
               
               
               Cow position:chr15:20290186-20289825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:251
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):12, 19

               
               
               Conread position:213-625
               
               
               Cow position:chr15:4789098-4788679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:278
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):7, 143

               
               
               Conread position:214-630
               
               
               Cow position:chr15:1083500-1083076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 51

               
               
               Conread position:214-631
               
               
               Cow position:chr15:36621269-36621716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 144

               
               
               Conread position:214-632
               
               
               Cow position:chr15:20391403-20390979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:293
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):101, 17

               
               
               Conread position:214-632
               
               
               Cow position:chr15:24967675-24968091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):200, 18

               
               
               Conread position:214-633
               
               
               Cow position:chr15:10088192-10088614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 18

               
               
               Conread position:215-403
               
               
               Cow position:chr15:15177189-15177383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):17, 67

               
               
               Conread position:215-414
               
               
               Cow position:chr15:17124598-17124388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):104, 144

               
               
               Conread position:215-438
               
               
               Cow position:chr15:19554053-19553823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):104, 142

               
               
               Conread position:215-597
               
               
               Cow position:chr15:44377144-44377539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:265
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):86, 42

               
               
               Conread position:215-630
               
               
               Cow position:chr15:5683010-5683431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:278
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):83, 235

               
               
               Conread position:215-631
               
               
               Cow position:chr15:27973332-27972917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 17

               
               
               Conread position:215-631
               
               
               Cow position:chr15:45478870-45479305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:296
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):23, 140

               
               
               Conread position:215-632
               
               
               Cow position:chr15:28924892-28924467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 94

               
               
               Conread position:215-632
               
               
               Cow position:chr15:33284746-33285181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:281
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):16, 67

               
               
               Conread position:216-325
               
               
               Cow position:chr15:18784636-18784745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:88
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:216-401
               
               
               Cow position:chr15:40082861-40083050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):18, 139

               
               
               Conread position:216-406
               
               
               Cow position:chr15:8715308-8715112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):103, 47

               
               
               Conread position:216-412
               
               
               Cow position:chr15:41321078-41320878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):97, 137

               
               
               Conread position:216-420
               
               
               Cow position:chr15:2522490-2522690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):127, 13

               
               
               Conread position:216-421
               
               
               Cow position:chr15:8127782-8127997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):21, 145

               
               
               Conread position:216-437
               
               
               Cow position:chr15:49491529-49491749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):97, 12

               
               
               Conread position:216-537
               
               
               Cow position:chr15:39326626-39326311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:223
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):145, 20

               
               
               Conread position:216-562
               
               
               Cow position:chr15:36353540-36353897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):36, 204

               
               
               Conread position:216-601
               
               
               Cow position:chr15:16657345-16657760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:289
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):104, 21

               
               
               Conread position:216-621
               
               
               Cow position:chr15:7456593-7456985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:272
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):108, 15

               
               
               Conread position:216-626
               
               
               Cow position:chr15:45245668-45245254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:283
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):20, 140

               
               
               Conread position:216-630
               
               
               Cow position:chr15:1804455-1804031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:290
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):82, 25

               
               
               Conread position:216-630
               
               
               Cow position:chr15:36346669-36347066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:285
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):323, 16

               
               
               Conread position:216-632
               
               
               Cow position:chr15:4919193-4918753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:306
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):85, 12

               
               
               Conread position:216-632
               
               
               Cow position:chr15:6227302-6226899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:281
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):97, 47

               
               
               Conread position:216-632
               
               
               Cow position:chr15:12304514-12304940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:282
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):99, 16

               
               
               Conread position:216-632
               
               
               Cow position:chr15:16822823-16823236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:276
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):28, 43

               
               
               Conread position:216-632
               
               
               Cow position:chr15:21893654-21894081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 139

               
               
               Conread position:216-632
               
               
               Cow position:chr15:25667351-25666924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:286
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):112, 147

               
               
               Conread position:216-632
               
               
               Cow position:chr15:38883015-38883455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:298
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):13, 140

               
               
               Conread position:216-633
               
               
               Cow position:chr15:24616441-24616867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:299
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):103, 146

               
               
               Conread position:216-643
               
               
               Cow position:chr15:42142750-42143166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 15

               
               
               Conread position:216-645
               
               
               Cow position:chr15:5499158-5498717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:283
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):15, 115

               
               
               Conread position:216-645
               
               
               Cow position:chr15:17084083-17084524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 12

               
               
               Conread position:216-650
               
               
               Cow position:chr15:52778654-52778212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:279
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):18, 115

               
               
               Conread position:217-389
               
               
               Cow position:chr15:23278376-23278545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):18, 50

               
               
               Conread position:217-389
               
               
               Cow position:chr15:26849657-26849484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:217-420
               
               
               Cow position:chr15:25595652-25595442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):96, 58

               
               
               Conread position:217-420
               
               
               Cow position:chr15:46364649-46364858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):79, 48

               
               
               Conread position:217-482
               
               
               Cow position:chr15:4076205-4076471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):19, 77

               
               
               Conread position:217-539
               
               
               Cow position:chr15:5717592-5717915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):11, 126

               
               
               Conread position:217-539
               
               
               Cow position:chr15:22930479-22930139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):17, 68

               
               
               Conread position:217-562
               
               
               Cow position:chr15:1857601-1857956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:245
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):104, 65

               
               
               Conread position:217-624
               
               
               Cow position:chr15:39373580-39373138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:288
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):78, 157

               
               
               Conread position:217-630
               
               
               Cow position:chr15:23114705-23115132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:288
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):35, 20

               
               
               Conread position:217-632
               
               
               Cow position:chr15:3700407-3699983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:279
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):57, 27

               
               
               Conread position:217-632
               
               
               Cow position:chr15:19402878-19403277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:282
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):20, 116

               
               
               Conread position:218-325
               
               
               Cow position:chr15:30956446-30956341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:88
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:218-396
               
               
               Cow position:chr15:41475950-41475770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):90, 13

               
               
               Conread position:218-402
               
               
               Cow position:chr15:40562804-40562616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):101, 10

               
               
               Conread position:218-403
               
               
               Cow position:chr15:53028237-53028430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):18, 131

               
               
               Conread position:218-405
               
               
               Cow position:chr15:7811655-7811460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):85, 140

               
               
               Conread position:218-419
               
               
               Cow position:chr15:37970680-37970888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):99, 10

               
               
               Conread position:218-532
               
               
               Cow position:chr15:19950362-19950672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):94, 61

               
               
               Conread position:218-539
               
               
               Cow position:chr15:43114844-43114517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):24, 129

               
               
               Conread position:218-541
               
               
               Cow position:chr15:5409019-5408705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):19, 127

               
               
               Conread position:218-560
               
               
               Cow position:chr15:49273836-49274178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:231
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):20, 119

               
               
               Conread position:218-597
               
               
               Cow position:chr15:23572810-23572415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:274
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):109, 10

               
               
               Conread position:218-625
               
               
               Cow position:chr15:45549-45124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:286
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):101, 21

               
               
               Conread position:218-629
               
               
               Cow position:chr15:8665731-8665286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 136

               
               
               Conread position:218-629
               
               
               Cow position:chr15:43827896-43827476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:283
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):101, 140

               
               
               Conread position:218-632
               
               
               Cow position:chr15:17100826-17100415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 13

               
               
               Conread position:218-632
               
               
               Cow position:chr15:20081650-20082059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:277
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):12, 19

               
               
               Conread position:218-632
               
               
               Cow position:chr15:21941974-21941546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 135

               
               
               Conread position:218-632
               
               
               Cow position:chr15:47990890-47990463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:277
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):131, 349

               
               
               Conread position:218-632
               
               
               Cow position:chr15:50340993-50341414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:287
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):16, 133

               
               
               Conread position:218-633
               
               
               Cow position:chr15:6168661-6168215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:301
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):12, 147

               
               
               Conread position:218-633
               
               
               Cow position:chr15:20534577-20534149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 141

               
               
               Conread position:218-645
               
               
               Cow position:chr15:34139870-34140293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:292
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):95, 22

               
               
               Conread position:218-645
               
               
               Cow position:chr15:39405616-39406047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 141

               
               
               Conread position:219-404
               
               
               Cow position:chr15:14880458-14880275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):12, 86

               
               
               Conread position:219-561
               
               
               Cow position:chr15:8604096-8604449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):96, 46

               
               
               Conread position:219-620
               
               
               Cow position:chr15:31137589-31137174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:286
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):19, 137

               
               
               Conread position:219-624
               
               
               Cow position:chr15:29027003-29026587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:285
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):99, 12

               
               
               Conread position:219-631
               
               
               Cow position:chr15:1301023-1301438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:281
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):189, 125

               
               
               Conread position:219-632
               
               
               Cow position:chr15:21366313-21365898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 44

               
               
               Conread position:219-632
               
               
               Cow position:chr15:22939445-22939034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 12

               
               
               Conread position:219-632
               
               
               Cow position:chr15:31857465-31857891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 70

               
               
               Conread position:219-632
               
               
               Cow position:chr15:40798539-40798126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 12

               
               
               Conread position:219-632
               
               
               Cow position:chr15:40957456-40957878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:280
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):101, 13

               
               
               Conread position:219-642
               
               
               Cow position:chr15:53037088-53036672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:270
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):28, 175

               
               
               Conread position:220-325
               
               
               Cow position:chr15:32022442-32022333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:90
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:220-389
               
               
               Cow position:chr15:18941910-18942083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):18, 125

               
               
               Conread position:220-414
               
               
               Cow position:chr15:50162992-50163187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):17, 115

               
               
               Conread position:220-443
               
               
               Cow position:chr15:9978983-9979203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):99, 11

               
               
               Conread position:220-536
               
               
               Cow position:chr15:40379089-40379414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:223
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):25, 10

               
               
               Conread position:220-614
               
               
               Cow position:chr15:17233065-17233475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 12

               
               
               Conread position:220-624
               
               
               Cow position:chr15:35839219-35838799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:273
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):93, 139

               
               
               Conread position:220-630
               
               
               Cow position:chr15:44252265-44252660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:264
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):188, 11

               
               
               Conread position:220-631
               
               
               Cow position:chr15:10246117-10245709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 126

               
               
               Conread position:220-632
               
               
               Cow position:chr15:7192368-7191962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:280
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):17, 93

               
               
               Conread position:220-632
               
               
               Cow position:chr15:44051604-44051198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 96

               
               
               Conread position:221-623
               
               
               Cow position:chr15:30047675-30047249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:279
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):78, 245

               
               
               Conread position:221-624
               
               
               Cow position:chr15:15041549-15041144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:284
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):75, 144

               
               
               Conread position:221-632
               
               
               Cow position:chr15:24128540-24128948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:269
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):16, 45

               
               
               Conread position:222-426
               
               
               Cow position:chr15:19942477-19942681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):82, 131

               
               
               Conread position:222-611
               
               
               Cow position:chr15:32324328-32323927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 131

               
               
               Conread position:222-631
               
               
               Cow position:chr15:20459431-20459002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 137

               
               
               Conread position:222-631
               
               
               Cow position:chr15:22938886-22938479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 10

               
               
               Conread position:223-633
               
               
               Cow position:chr15:49922016-49922440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 124

               
               
               Conread position:224-632
               
               
               Cow position:chr15:795136-794714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 121

               
               
               Conread position:224-632
               
               
               Cow position:chr15:21832564-21832125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:303
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):13, 72

               
               
               Conread position:224-632
               
               
               Cow position:chr15:22532136-22532540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:283
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):75, 8

               
               
               Conread position:225-632
               
               
               Cow position:chr15:43626347-43626761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 127

               
               
               Conread position:227-631
               
               
               Cow position:chr15:11996143-11995727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 121

               
               
               Conread position:227-632
               
               
               Cow position:chr15:20370568-20370164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 127

               
               
               Conread position:227-632
               
               
               Cow position:chr15:39598128-39598537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:267
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):11, 235

               
               
               Conread position:228-412
               
               
               Cow position:chr15:44089279-44089087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):87, 117

               
               
               Conread position:228-618
               
               
               Cow position:chr15:16439949-16439540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:269
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):8, 134

               
               
               Conread position:228-631
               
               
               Cow position:chr15:8006863-8007280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:278
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):8, 134

               
               
               Conread position:228-631
               
               
               Cow position:chr15:17762792-17763198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:271
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):20, 193

               
               
               Conread position:228-632
               
               
               Cow position:chr15:1722955-1722552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):199, 88

               
               
               Conread position:228-632
               
               
               Cow position:chr15:12722970-12723385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 124

               
               
               Conread position:228-632
               
               
               Cow position:chr15:20472659-20472247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:277
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):8, 127

               
               
               Conread position:228-632
               
               
               Cow position:chr15:32980149-32979735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:283
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):8, 44

               
               
               Conread position:228-632
               
               
               Cow position:chr15:36391556-36391971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:291
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):8, 132

               
               
               Conread position:228-632
               
               
               Cow position:chr15:49739131-49738748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:279
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):21, 71

               
               
               Conread position:228-632
               
               
               Cow position:chr15:51427941-51427524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:282
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):8, 128

               
               
               Conread position:228-645
               
               
               Cow position:chr15:26896813-26896399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:289
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):98, 190

               
               
               Conread position:229-562
               
               
               Cow position:chr15:14576217-14576563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):86, 35

               
               
               Conread position:229-632
               
               
               Cow position:chr15:6462606-6462203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:274
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):91, 74

               
               
               Conread position:231-632
               
               
               Cow position:chr15:5571740-5571337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:269
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):95, 38

               
               
               Conread position:232-404
               
               
               Cow position:chr15:19976437-19976619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:232-410
               
               
               Cow position:chr15:28099001-28099185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):6, 32

               
               
               Conread position:232-414
               
               
               Cow position:chr15:20566018-20566207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):87, 127

               
               
               Conread position:232-420
               
               
               Cow position:chr15:6037557-6037371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):6, 61

               
               
               Conread position:232-438
               
               
               Cow position:chr15:26529786-26529996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):81, 15

               
               
               Conread position:232-439
               
               
               Cow position:chr15:42380818-42381027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):73, 37

               
               
               Conread position:232-488
               
               
               Cow position:chr15:38827425-38827172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):177, 74

               
               
               Conread position:232-529
               
               
               Cow position:chr15:36793602-36793297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):89, 28

               
               
               Conread position:232-538
               
               
               Cow position:chr15:31929008-31928694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:223
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):48, 118

               
               
               Conread position:232-539
               
               
               Cow position:chr15:5158261-5158580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:214
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):87, 238

               
               
               Conread position:232-562
               
               
               Cow position:chr15:662574-662243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):69, 111

               
               
               Conread position:232-563
               
               
               Cow position:chr15:4418512-4418171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:244
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):94, 117

               
               
               Conread position:232-574
               
               
               Cow position:chr15:286362-286719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:240
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):88, 68

               
               
               Conread position:232-588
               
               
               Cow position:chr15:4295650-4296019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:246
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):83, 16

               
               
               Conread position:232-621
               
               
               Cow position:chr15:36773791-36773406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:273
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):9, 34

               
               
               Conread position:232-622
               
               
               Cow position:chr15:44658256-44658649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:278
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):81, 113

               
               
               Conread position:232-624
               
               
               Cow position:chr15:36435092-36435501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 131

               
               
               Conread position:232-628
               
               
               Cow position:chr15:36259707-36259307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:263
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):169, 58

               
               
               Conread position:232-630
               
               
               Cow position:chr15:37931845-37931472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:261
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):55, 29

               
               
               Conread position:232-631
               
               
               Cow position:chr15:6905429-6905839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 107

               
               
               Conread position:232-631
               
               
               Cow position:chr15:26912178-26911781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 32

               
               
               Conread position:232-632
               
               
               Cow position:chr15:225913-225504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 96

               
               
               Conread position:232-632
               
               
               Cow position:chr15:7429856-7430280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:281
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):63, 130

               
               
               Conread position:232-632
               
               
               Cow position:chr15:14870645-14871045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:259
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):161, 57

               
               
               Conread position:232-632
               
               
               Cow position:chr15:16112284-16112704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:285
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):65, 121

               
               
               Conread position:232-632
               
               
               Cow position:chr15:19186733-19186316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:284
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):37, 102

               
               
               Conread position:232-632
               
               
               Cow position:chr15:20487311-20486918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:282
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):56, 35

               
               
               Conread position:232-632
               
               
               Cow position:chr15:22531563-22531961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 109

               
               
               Conread position:232-632
               
               
               Cow position:chr15:29810015-29810408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:278
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):74, 109

               
               
               Conread position:232-632
               
               
               Cow position:chr15:39599339-39599739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:275
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):87, 34

               
               
               Conread position:232-632
               
               
               Cow position:chr15:46563587-46563185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:271
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):182, 103

               
               
               Conread position:232-632
               
               
               Cow position:chr15:50322501-50322894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 47

               
               
               Conread position:232-633
               
               
               Cow position:chr15:12170152-12170546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:263
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):83, 91

               
               
               Conread position:232-635
               
               
               Cow position:chr15:20482938-20482532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:276
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):176, 11

               
               
               Conread position:232-638
               
               
               Cow position:chr15:26919379-26918967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 42

               
               
               Conread position:232-645
               
               
               Cow position:chr15:25208869-25208453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:278
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):77, 199

               
               
               Conread position:232-650
               
               
               Cow position:chr15:2145225-2144813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:279
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):157, 56

               
               
               Conread position:233-420
               
               
               Cow position:chr15:4500589-4500789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):60, 119

               
               
               Conread position:233-632
               
               
               Cow position:chr15:5235100-5234705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 45

               
               
               Conread position:234-627
               
               
               Cow position:chr15:18720227-18720608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:265
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):267, 87

               
               
               Conread position:235-420
               
               
               Cow position:chr15:42353290-42353470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):179, 93

               
               
               Conread position:235-613
               
               
               Cow position:chr15:608036-608430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 111

               
               
               Conread position:235-631
               
               
               Cow position:chr15:6647343-6647744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:275
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):39, 121

               
               
               Conread position:235-632
               
               
               Cow position:chr15:5729849-5730236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:265
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):34, 74

               
               
               Conread position:236-419
               
               
               Cow position:chr15:12913605-12913416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):78, 112

               
               
               Conread position:236-511
               
               
               Cow position:chr15:25349868-25350143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):62, 78

               
               
               Conread position:236-576
               
               
               Cow position:chr15:37204964-37205287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):170, 66

               
               
               Conread position:236-624
               
               
               Cow position:chr15:16667604-16667208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 91

               
               
               Conread position:236-624
               
               
               Cow position:chr15:21822033-21821629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:281
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):64, 123

               
               
               Conread position:236-628
               
               
               Cow position:chr15:27863414-27863027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:255
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):185, 57

               
               
               Conread position:236-631
               
               
               Cow position:chr15:50350737-50351115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:268
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):74, 112

               
               
               Conread position:236-632
               
               
               Cow position:chr15:14020391-14020770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:271
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):226, 67

               
               
               Conread position:236-632
               
               
               Cow position:chr15:15214929-15215319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:261
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):178, 68

               
               
               Conread position:236-632
               
               
               Cow position:chr15:17353767-17353351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:278
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):63, 20

               
               
               Conread position:236-632
               
               
               Cow position:chr15:22530975-22531360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:265
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):98, 70

               
               
               Conread position:236-632
               
               
               Cow position:chr15:47821727-47822100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:273
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):178, 63

               
               
               Conread position:236-643
               
               
               Cow position:chr15:5072204-5071789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 134

               
               
               Conread position:236-645
               
               
               Cow position:chr15:30001590-30002002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 174

               
               
               Conread position:237-420
               
               
               Cow position:chr15:21363058-21362869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):70, 118

               
               
               Conread position:237-420
               
               
               Cow position:chr15:37719693-37719510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):84, 105

               
               
               Conread position:238-606
               
               
               Cow position:chr15:85350-84974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:262
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):69, 110

               
               
               Conread position:241-579
               
               
               Cow position:chr15:8353940-8354289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:227
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):66, 110

               
               
               Conread position:242-412
               
               
               Cow position:chr15:16230129-16230297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):71, 57

               
               
               Conread position:242-580
               
               
               Cow position:chr15:22553641-22553299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:234
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):65, 152

               
               
               Conread position:242-632
               
               
               Cow position:chr15:1330209-1329800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:282
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):58, 220

               
               
               Conread position:242-632
               
               
               Cow position:chr15:2953233-2952830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:276
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):73, 113

               
               
               Conread position:243-414
               
               
               Cow position:chr15:9921863-9921688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):62, 14

               
               
               Conread position:243-629
               
               
               Cow position:chr15:8961924-8962296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:247
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):179, 74

               
               
               Conread position:243-632
               
               
               Cow position:chr15:11011692-11011310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:259
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):103, 32

               
               
               Conread position:243-632
               
               
               Cow position:chr15:16583796-16583412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:271
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):77, 221

               
               
               Conread position:243-632
               
               
               Cow position:chr15:21420848-21421241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 23

               
               
               Conread position:243-632
               
               
               Cow position:chr15:33662412-33662793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:273
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):86, 173

               
               
               Conread position:244-624
               
               
               Cow position:chr15:39490759-39490360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:258
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):82, 112

               
               
               Conread position:245-531
               
               
               Cow position:chr15:14888734-14888443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):169, 73

               
               
               Conread position:246-405
               
               
               Cow position:chr15:48351034-48351193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):67, 22

               
               
               Conread position:246-410
               
               
               Cow position:chr15:14964256-14964094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:246-586
               
               
               Cow position:chr15:11559448-11559104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:239
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):56, 20

               
               
               Conread position:246-624
               
               
               Cow position:chr15:9622084-9622484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:267
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):73, 117

               
               
               Conread position:246-625
               
               
               Cow position:chr15:5420978-5420590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:247
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):67, 215

               
               
               Conread position:246-627
               
               
               Cow position:chr15:8579233-8578822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:273
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):57, 116

               
               
               Conread position:246-631
               
               
               Cow position:chr15:17196049-17196443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 113

               
               
               Conread position:246-631
               
               
               Cow position:chr15:21803761-21803359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:272
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):52, 126

               
               
               Conread position:246-632
               
               
               Cow position:chr15:4485052-4485442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:285
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):53, 107

               
               
               Conread position:246-632
               
               
               Cow position:chr15:6969891-6970285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:273
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):74, 17

               
               
               Conread position:246-632
               
               
               Cow position:chr15:26903097-26903493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:275
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):52, 91

               
               
               Conread position:246-632
               
               
               Cow position:chr15:35112969-35112589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:266
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):176, 20

               
               
               Conread position:246-632
               
               
               Cow position:chr15:44436661-44437033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:267
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):67, 23

               
               
               Conread position:246-649
               
               
               Cow position:chr15:25906822-25907228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:286
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):104, 60

               
               
               Conread position:247-603
               
               
               Cow position:chr15:21583022-21582649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:251
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):74, 103

               
               
               Conread position:247-628
               
               
               Cow position:chr15:23696997-23696622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:246
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):66, 122

               
               
               Conread position:247-631
               
               
               Cow position:chr15:1297651-1298035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 12

               
               
               Conread position:248-589
               
               
               Cow position:chr15:10608403-10608049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):21, 102

               
               
               Conread position:248-632
               
               
               Cow position:chr15:26079440-26079072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:243
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):64, 148

               
               
               Conread position:248-632
               
               
               Cow position:chr15:33306026-33306407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:249
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):72, 23

               
               
               Conread position:249-632
               
               
               Cow position:chr15:16603736-16604121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:257
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):53, 95

               
               
               Conread position:249-632
               
               
               Cow position:chr15:52482922-52482528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:273
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):72, 97

               
               
               Conread position:249-632
               
               
               Cow position:chr15:53163927-53164321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:271
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):72, 97

               
               
               Conread position:250-537
               
               
               Cow position:chr15:34284502-34284208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):66, 98

               
               
               Conread position:251-632
               
               
               Cow position:chr15:27123626-27123251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:261
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):77, 107

               
               
               Conread position:253-632
               
               
               Cow position:chr15:26404199-26404568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:221
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):72, 140

               
               
               Conread position:255-605
               
               
               Cow position:chr15:23180358-23180703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:230
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):52, 97

               
               
               Conread position:255-630
               
               
               Cow position:chr15:38806592-38806198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:260
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):72, 161

               
               
               Conread position:257-631
               
               
               Cow position:chr15:25585177-25584791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:257
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):71, 211

               
               
               Conread position:262-631
               
               
               Cow position:chr15:31948923-31949298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:255
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):56, 80

               
               
               Conread position:266-568
               
               
               Cow position:chr15:10512345-10512036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:216
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):38, 93

               
               
               Conread position:266-632
               
               
               Cow position:chr15:362949-363317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):60, 13

               
               
               Conread position:271-630
               
               
               Cow position:chr15:19119664-19119314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):28, 6

               
               
               Conread position:275-632
               
               
               Cow position:chr15:51898158-51898530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:251
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):44, 88

               
               
               Conread position:295-632
               
               
               Cow position:chr15:24941412-24941087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:231
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):52, 32

               
               
               Conread position:299-586
               
               
               Cow position:chr15:10737776-10737496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):150, 28

               
               
               Conread position:299-598
               
               
               Cow position:chr15:39316884-39316570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):22, 48

               
               
               Conread position:299-630
               
               
               Cow position:chr15:16616151-16616491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:239
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):22, 120

               
               
               Conread position:299-631
               
               
               Cow position:chr15:29604738-29604419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:218
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):13, 109

               
               
               Conread position:306-632
               
               
               Cow position:chr15:23768287-23767966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):29, 36

               
               
               Conread position:308-632
               
               
               Cow position:chr15:19280120-19279794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):13, 60

               
               
               Conread position:308-633
               
               
               Cow position:chr15:15573863-15573520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):7, 34

               
               
               Conread position:318-632
               
               
               Cow position:chr15:20351814-20352133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):96, 89

               
               
               Conread position:319-631
               
               
               Cow position:chr15:34207204-34206899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:211
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):158, 89

               
               
               Conread position:319-632
               
               
               Cow position:chr15:10335740-10336054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):58, 85

               
               
               Conread position:319-632
               
               
               Cow position:chr15:46868731-46868414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):89, 48

               
               
               Conread position:319-632
               
               
               Cow position:chr15:50302167-50302484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):125, 50

               
               
               Conread position:320-632
               
               
               Cow position:chr15:22136674-22136981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:218
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):223, 91

               
               
               Conread position:320-632
               
               
               Cow position:chr15:26573364-26573686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):94, 29

               
               
               Conread position:320-645
               
               
               Cow position:chr15:13554337-13554653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):84, 142

               
               
               Conread position:321-632
               
               
               Cow position:chr15:26421612-26421297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):150, 46

               
               
               Conread position:322-632
               
               
               Cow position:chr15:9178217-9177914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):7, 47

               
               
               Conread position:323-545
               
               
               Cow position:chr15:28258469-28258244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):85, 18

               
               
               Conread position:323-571
               
               
               Cow position:chr15:12870876-12870626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):85, 18

               
               
               Conread position:323-588
               
               
               Cow position:chr15:22871602-22871861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):177, 18

               
               
               Conread position:323-627
               
               
               Cow position:chr15:52454419-52454739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):39, 26

               
               
               Conread position:323-628
               
               
               Cow position:chr15:41000082-40999764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):85, 18

               
               
               Conread position:323-631
               
               
               Cow position:chr15:47843263-47842960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:229
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):23, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr15:21389176-21388865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:225
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):99, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr15:33976707-33976394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):86, 28

               
               
               Conread position:323-632
               
               
               Cow position:chr15:39621326-39621637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:229
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):84, 30

               
               
               Conread position:323-645
               
               
               Cow position:chr15:22168060-22168370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):175, 26

               
               
               Conread position:325-632
               
               
               Cow position:chr15:22095128-22095420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):173, 82

               
               
               Conread position:326-632
               
               
               Cow position:chr15:8230576-8230282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):88, 15

               
               
               Conread position:333-607
               
               
               Cow position:chr15:53045879-53045601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):81, 8

               
               
               Conread position:333-631
               
               
               Cow position:chr15:6657097-6657405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):76, 8

               
               
               Conread position:333-632
               
               
               Cow position:chr15:13387075-13387382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):70, 8

               
               
               Conread position:335-631
               
               
               Cow position:chr15:23568128-23567828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):66, 166

               
               
               Conread position:336-628
               
               
               Cow position:chr15:35417625-35417326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):136, 71

               
               
               Conread position:337-632
               
               
               Cow position:chr15:9928360-9928657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):77, 70

               
               
               Conread position:337-637
               
               
               Cow position:chr15:4534912-4535210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:224
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):77, 39

               
               
               Conread position:338-632
               
               
               Cow position:chr15:27732414-27732697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):88, 29

               
               
               Conread position:340-632
               
               
               Cow position:chr15:16639781-16640083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):74, 146

               
               
               Conread position:340-632
               
               
               Cow position:chr15:45322784-45323083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):20, 245

               
               
               Conread position:351-589
               
               
               Cow position:chr15:12655901-12655656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):56, 89

               
               
               Conread position:351-631
               
               
               Cow position:chr15:13515381-13515670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):54, 124

               
               
               Conread position:351-632
               
               
               Cow position:chr15:6530833-6530544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):57, 116

               
               
               Conread position:351-645
               
               
               Cow position:chr15:53101602-53101905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):56, 47

               
               
               Conread position:352-597
               
               
               Cow position:chr15:47280123-47279876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):62, 55

               
               
               Conread position:352-632
               
               
               Cow position:chr15:15880942-15881234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):53, 120

               
               
               Conread position:365-632
               
               
               Cow position:chr15:24045071-24044799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):23, 107

               
               
               Conread position:366-632
               
               
               Cow position:chr15:5632711-5632971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):66, 46

               
               
               Conread position:366-632
               
               
               Cow position:chr15:27280901-27281163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):43, 84

               
               
               Conread position:366-632
               
               
               Cow position:chr15:41620160-41619888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):49, 18

               
               
               Conread position:371-633
               
               
               Cow position:chr15:36782287-36782032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):24, 84

               
               
               Conread position:374-631
               
               
               Cow position:chr15:9871376-9871112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):48, 21

               
               
               Conread position:376-629
               
               
               Cow position:chr15:18206472-18206216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):47, 84

               
               
               Conread position:376-631
               
               
               Cow position:chr15:37716890-37716623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):19, 83

               
               
               Conread position:379-631
               
               
               Cow position:chr15:25306588-25306843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):80, 30

               
               
               Conread position:391-632
               
               
               Cow position:chr15:11646434-11646190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):23, 8

               
               
               Conread position:391-632
               
               
               Cow position:chr15:40009599-40009351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):16, 61

               
               
               Conread position:399-632
               
               
               Cow position:chr15:47105106-47105336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):14, 54

               
               
               Conread position:408-632
               
               
               Cow position:chr15:20725542-20725315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):14, 48

               
               
               Conread position:411-631
               
               
               Cow position:chr15:10845798-10846020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):86, 37

               
               
               Conread position:411-632
               
               
               Cow position:chr15:52740047-52739822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):44, 39

               
               
               Conread position:412-632
               
               
               Cow position:chr15:6586637-6586414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):81, 53

               
               
               Conread position:415-633
               
               
               Cow position:chr15:21522869-21523090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):83, 43

               
               
               Conread position:429-632
               
               
               Cow position:chr15:33678797-33678994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):86, 21

               
               
               Conread position:431-632
               
               
               Cow position:chr15:53680669-53680469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):40, 101

               
               
               Conread position:440-624
               
               
               Cow position:chr15:4350488-4350309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):142, 13

               
               
               Conread position:444-632
               
               
               Cow position:chr15:6046205-6046014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):27, 35

               
               
               Conread position:445-632
               
               
               Cow position:chr15:7827928-7827741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):55, 129

               
               
               Conread position:447-632
               
               
               Cow position:chr15:11363066-11362883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):51, 137

               
               
               Conread position:448-626
               
               
               Cow position:chr15:34145043-34144862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:458-631
               
               
               Cow position:chr15:12316049-12316222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):31, 79

               
               
               Conread position:458-632
               
               
               Cow position:chr15:29792787-29792613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):78, 91

               
               
               Conread position:462-631
               
               
               Cow position:chr15:36422785-36422955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):64, 5

               
               
               Conread position:470-630
               
               
               Cow position:chr15:1128129-1128293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):19, 61

               
               
               Conread position:470-631
               
               
               Cow position:chr15:6082509-6082344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:470-632
               
               
               Cow position:chr15:38846238-38846395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):66, 96

               
               
               Conread position:471-632
               
               
               Cow position:chr15:22751586-22751750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):25, 49

               
               
               Conread position:471-632
               
               
               Cow position:chr15:29340201-29340361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:471-646
               
               
               Cow position:chr15:44256613-44256790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:476-632
               
               
               Cow position:chr15:9267912-9267764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):22, 56

               
               
               Conread position:478-632
               
               
               Cow position:chr15:144094-143932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:480-632
               
               
               Cow position:chr15:34255597-34255448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):34, 51

               
               
               Conread position:492-632
               
               
               Cow position:chr15:18284395-18284541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:493-632
               
               
               Cow position:chr15:39082361-39082500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):91, 63

               
               
               Conread position:493-645
               
               
               Cow position:chr15:47274532-47274685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):50, 24

               
               
               Conread position:495-617
               
               
               Cow position:chr15:5044293-5044171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):44, 70

               
               
               Conread position:495-629
               
               
               Cow position:chr15:9072268-9072134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):19, 121

               
               
               Conread position:495-632
               
               
               Cow position:chr15:241003-241146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr15:4093771-4093625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr15:4501138-4501279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:111
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr15:10456851-10456711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):88, 108

               
               
               Conread position:495-632
               
               
               Cow position:chr15:15707949-15707819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr15:23702936-23703072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr15:24305318-24305179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):90, 20

               
               
               Conread position:495-632
               
               
               Cow position:chr15:26158455-26158318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr15:32287596-32287459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):40, 56

               
               
               Conread position:495-632
               
               
               Cow position:chr15:34104432-34104565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):48, 73

               
               
               Conread position:495-632
               
               
               Cow position:chr15:41583072-41583209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:495-645
               
               
               Cow position:chr15:16307574-16307728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:496-632
               
               
               Cow position:chr15:52683332-52683468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):113, 46

               
               
               Conread position:497-632
               
               
               Cow position:chr15:28038920-28039055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:103
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:497-632
               
               
               Cow position:chr15:39090434-39090562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:498-632
               
               
               Cow position:chr15:33605087-33605221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:500-629
               
               
               Cow position:chr15:34284195-34284065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):24, 8

               
               
               Conread position:500-632
               
               
               Cow position:chr15:23332716-23332582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:501-632
               
               
               Cow position:chr15:24822211-24822076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:501-632
               
               
               Cow position:chr15:31085703-31085833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):42, 65

               
               
               Conread position:502-637
               
               
               Cow position:chr15:21903278-21903144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):130, 44

               
               
               Conread position:505-632
               
               
               Cow position:chr15:13669731-13669604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:98
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:522-632
               
               
               Cow position:chr15:16476560-16476446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:92
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:194-632
               
               
               Cow position:chr16:38708601-38709037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:282
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):136, 34

               
               
               Conread position:196-404
               
               
               Cow position:chr16:48455909-48455701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):31, 68

               
               
               Conread position:198-646
               
               
               Cow position:chr16:47243198-47242725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:322
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):24, 162

               
               
               Conread position:202-613
               
               
               Cow position:chr16:46433096-46433514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:285
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):65, 29

               
               
               Conread position:203-632
               
               
               Cow position:chr16:23681590-23681162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 183

               
               
               Conread position:204-420
               
               
               Cow position:chr16:15407326-15407553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):12, 157

               
               
               Conread position:204-621
               
               
               Cow position:chr16:16552797-16552363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:283
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):25, 215

               
               
               Conread position:204-632
               
               
               Cow position:chr16:41590996-41590569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:286
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):89, 27

               
               
               Conread position:205-628
               
               
               Cow position:chr16:55784518-55784967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:286
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):33, 216

               
               
               Conread position:205-632
               
               
               Cow position:chr16:25839840-25839407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:288
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):32, 94

               
               
               Conread position:205-632
               
               
               Cow position:chr16:52636172-52636592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 26

               
               
               Conread position:206-645
               
               
               Cow position:chr16:33705029-33704576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:298
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):28, 224

               
               
               Conread position:207-539
               
               
               Cow position:chr16:50409474-50409113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:251
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):30, 154

               
               
               Conread position:207-582
               
               
               Cow position:chr16:22380138-22380515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:253
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):108, 30

               
               
               Conread position:207-630
               
               
               Cow position:chr16:6016158-6016601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:287
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):29, 108

               
               
               Conread position:208-643
               
               
               Cow position:chr16:8958835-8959287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:306
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):107, 24

               
               
               Conread position:209-324
               
               
               Cow position:chr16:26550817-26550932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:91
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:209-630
               
               
               Cow position:chr16:56874009-56874427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:283
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):109, 96

               
               
               Conread position:209-632
               
               
               Cow position:chr16:10592658-10592230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:300
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):10, 44

               
               
               Conread position:209-645
               
               
               Cow position:chr16:7136119-7136575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:291
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):13, 146

               
               
               Conread position:210-629
               
               
               Cow position:chr16:11774829-11775257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 20

               
               
               Conread position:210-643
               
               
               Cow position:chr16:35343247-35343699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:297
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):21, 83

               
               
               Conread position:211-397
               
               
               Cow position:chr16:52325378-52325570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):81, 17

               
               
               Conread position:211-405
               
               
               Cow position:chr16:33290609-33290405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):26, 140

               
               
               Conread position:211-607
               
               
               Cow position:chr16:8231143-8231544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:266
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):46, 21

               
               
               Conread position:211-631
               
               
               Cow position:chr16:35195392-35195820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:286
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):117, 24

               
               
               Conread position:211-645
               
               
               Cow position:chr16:15960055-15960518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:313
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):23, 151

               
               
               Conread position:212-326
               
               
               Cow position:chr16:51393165-51393281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:93
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:212-404
               
               
               Cow position:chr16:4615279-4615079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):109, 16

               
               
               Conread position:212-405
               
               
               Cow position:chr16:29311748-29311544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):107, 149

               
               
               Conread position:212-408
               
               
               Cow position:chr16:30646729-30646529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):81, 132

               
               
               Conread position:212-538
               
               
               Cow position:chr16:47852375-47852708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):25, 133

               
               
               Conread position:212-632
               
               
               Cow position:chr16:4971799-4972235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 209

               
               
               Conread position:212-632
               
               
               Cow position:chr16:5654728-5654298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:296
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):16, 157

               
               
               Conread position:212-645
               
               
               Cow position:chr16:42078632-42079065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:286
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):88, 15

               
               
               Conread position:213-403
               
               
               Cow position:chr16:45278752-45278559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):112, 14

               
               
               Conread position:213-419
               
               
               Cow position:chr16:30211667-30211461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):94, 23

               
               
               Conread position:213-420
               
               
               Cow position:chr16:24202641-24202861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):23, 141

               
               
               Conread position:213-539
               
               
               Cow position:chr16:16565326-16565007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):204, 18

               
               
               Conread position:213-548
               
               
               Cow position:chr16:11083214-11082883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 19

               
               
               Conread position:213-581
               
               
               Cow position:chr16:12274292-12273909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:260
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):15, 47

               
               
               Conread position:213-632
               
               
               Cow position:chr16:10148488-10148071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 103

               
               
               Conread position:213-632
               
               
               Cow position:chr16:23483496-23483078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:295
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):114, 14

               
               
               Conread position:214-326
               
               
               Cow position:chr16:31471898-31471785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:90
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:214-405
               
               
               Cow position:chr16:33302400-33302205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):98, 17

               
               
               Conread position:214-405
               
               
               Cow position:chr16:38384274-38384468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):101, 16

               
               
               Conread position:214-627
               
               
               Cow position:chr16:7582933-7582507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:290
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):101, 14

               
               
               Conread position:214-632
               
               
               Cow position:chr16:15370898-15370469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 13

               
               
               Conread position:214-632
               
               
               Cow position:chr16:38663492-38663922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 17

               
               
               Conread position:214-632
               
               
               Cow position:chr16:38905007-38905436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 17

               
               
               Conread position:214-632
               
               
               Cow position:chr16:45139880-45139459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:287
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):101, 22

               
               
               Conread position:214-633
               
               
               Cow position:chr16:51709933-51710339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:277
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:215-399
               
               
               Cow position:chr16:16543069-16542876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):111, 135

               
               
               Conread position:215-404
               
               
               Cow position:chr16:13778711-13778529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:215-413
               
               
               Cow position:chr16:8809880-8810080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):92, 129

               
               
               Conread position:215-419
               
               
               Cow position:chr16:45193592-45193802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):90, 17

               
               
               Conread position:215-449
               
               
               Cow position:chr16:11134770-11135008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):108, 14

               
               
               Conread position:215-516
               
               
               Cow position:chr16:44429096-44428786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):24, 50

               
               
               Conread position:215-556
               
               
               Cow position:chr16:33595731-33596069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):234, 104

               
               
               Conread position:215-561
               
               
               Cow position:chr16:8448440-8448783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):16, 59

               
               
               Conread position:215-631
               
               
               Cow position:chr16:55683516-55683084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 52

               
               
               Conread position:215-632
               
               
               Cow position:chr16:8522173-8522597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 55

               
               
               Conread position:215-632
               
               
               Cow position:chr16:13306654-13307076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 248

               
               
               Conread position:215-632
               
               
               Cow position:chr16:53813431-53813869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:294
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):21, 146

               
               
               Conread position:215-632
               
               
               Cow position:chr16:54579382-54578957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:282
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):98, 206

               
               
               Conread position:216-325
               
               
               Cow position:chr16:17209085-17209197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:93
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:216-325
               
               
               Cow position:chr16:54692995-54692886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:91
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:216-380
               
               
               Cow position:chr16:27117523-27117350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):103, 144

               
               
               Conread position:216-412
               
               
               Cow position:chr16:8288736-8288932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):103, 20

               
               
               Conread position:216-420
               
               
               Cow position:chr16:22776203-22776418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):105, 135

               
               
               Conread position:216-433
               
               
               Cow position:chr16:4321798-4321585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):91, 46

               
               
               Conread position:216-438
               
               
               Cow position:chr16:9596587-9596354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):23, 132

               
               
               Conread position:216-451
               
               
               Cow position:chr16:33236067-33236306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):99, 69

               
               
               Conread position:216-518
               
               
               Cow position:chr16:47835134-47834834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):177, 12

               
               
               Conread position:216-537
               
               
               Cow position:chr16:38244401-38244725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):21, 144

               
               
               Conread position:216-594
               
               
               Cow position:chr16:39682883-39683284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:265
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):106, 142

               
               
               Conread position:216-594
               
               
               Cow position:chr16:42733804-42734185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:268
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):20, 48

               
               
               Conread position:216-631
               
               
               Cow position:chr16:14754114-14754531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 30

               
               
               Conread position:216-632
               
               
               Cow position:chr16:2223177-2223617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 145

               
               
               Conread position:216-632
               
               
               Cow position:chr16:7665858-7665421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 136

               
               
               Conread position:216-632
               
               
               Cow position:chr16:10039630-10040048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:291
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):105, 16

               
               
               Conread position:216-632
               
               
               Cow position:chr16:37117295-37116864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:293
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):15, 88

               
               
               Conread position:216-632
               
               
               Cow position:chr16:39695265-39695687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:292
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):110, 21

               
               
               Conread position:216-632
               
               
               Cow position:chr16:42340393-42339995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:288
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):184, 53

               
               
               Conread position:216-632
               
               
               Cow position:chr16:44743911-44744342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:299
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):16, 148

               
               
               Conread position:216-632
               
               
               Cow position:chr16:52790248-52789851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:273
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):22, 88

               
               
               Conread position:216-632
               
               
               Cow position:chr16:56232030-56231613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 85

               
               
               Conread position:216-635
               
               
               Cow position:chr16:49125306-49125737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 16

               
               
               Conread position:216-638
               
               
               Cow position:chr16:9497043-9497488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:313
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):20, 152

               
               
               Conread position:216-645
               
               
               Cow position:chr16:19644101-19643672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:289
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):105, 20

               
               
               Conread position:216-661
               
               
               Cow position:chr16:50289373-50288918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 364

               
               
               Conread position:217-326
               
               
               Cow position:chr16:47303897-47304007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:217-415
               
               
               Cow position:chr16:21442394-21442600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):102, 33

               
               
               Conread position:217-418
               
               
               Cow position:chr16:43758430-43758640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):13, 47

               
               
               Conread position:217-438
               
               
               Cow position:chr16:6609294-6609520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):92, 69

               
               
               Conread position:217-445
               
               
               Cow position:chr16:48567741-48567510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):27, 14

               
               
               Conread position:217-449
               
               
               Cow position:chr16:31149590-31149351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):104, 146

               
               
               Conread position:217-451
               
               
               Cow position:chr16:34291088-34291320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):191, 14

               
               
               Conread position:217-512
               
               
               Cow position:chr16:889162-889448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):97, 15

               
               
               Conread position:217-539
               
               
               Cow position:chr16:22984967-22984641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):16, 138

               
               
               Conread position:217-593
               
               
               Cow position:chr16:7441885-7442273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 138

               
               
               Conread position:217-593
               
               
               Cow position:chr16:34256820-34257211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:251
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):101, 143

               
               
               Conread position:217-624
               
               
               Cow position:chr16:24128922-24128499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:288
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):113, 145

               
               
               Conread position:217-632
               
               
               Cow position:chr16:14242586-14242166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 133

               
               
               Conread position:217-632
               
               
               Cow position:chr16:15504313-15504736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:295
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):14, 111

               
               
               Conread position:217-632
               
               
               Cow position:chr16:17746058-17745625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 13

               
               
               Conread position:217-632
               
               
               Cow position:chr16:22773189-22772758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:291
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):26, 125

               
               
               Conread position:217-632
               
               
               Cow position:chr16:26610861-26610423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:298
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):14, 146

               
               
               Conread position:217-632
               
               
               Cow position:chr16:43308351-43308779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 15

               
               
               Conread position:218-317
               
               
               Cow position:chr16:42217443-42217542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:100
               
               
               Alignm identity:82
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:218-371
               
               
               Cow position:chr16:4911237-4911391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):89, 124

               
               
               Conread position:218-386
               
               
               Cow position:chr16:30561578-30561411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):103, 134

               
               
               Conread position:218-405
               
               
               Cow position:chr16:7928168-7928364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):101, 128

               
               
               Conread position:218-410
               
               
               Cow position:chr16:31701811-31701621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):103, 134

               
               
               Conread position:218-412
               
               
               Cow position:chr16:24674456-24674663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):12, 28

               
               
               Conread position:218-418
               
               
               Cow position:chr16:11620398-11620590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):194, 19

               
               
               Conread position:218-420
               
               
               Cow position:chr16:258067-258276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):21, 143

               
               
               Conread position:218-438
               
               
               Cow position:chr16:31573458-31573238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):101, 11

               
               
               Conread position:218-450
               
               
               Cow position:chr16:56615288-56615526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):95, 128

               
               
               Conread position:218-452
               
               
               Cow position:chr16:11660257-11660487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):201, 14

               
               
               Conread position:218-539
               
               
               Cow position:chr16:56796442-56796782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:236
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):74, 13

               
               
               Conread position:218-586
               
               
               Cow position:chr16:38243449-38243826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 22

               
               
               Conread position:218-631
               
               
               Cow position:chr16:13689875-13689455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:277
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):97, 13

               
               
               Conread position:218-632
               
               
               Cow position:chr16:3633489-3633082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:289
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):97, 11

               
               
               Conread position:218-632
               
               
               Cow position:chr16:17665866-17665423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:301
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):101, 10

               
               
               Conread position:218-632
               
               
               Cow position:chr16:27261763-27262155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:284
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):18, 48

               
               
               Conread position:218-632
               
               
               Cow position:chr16:29159326-29158918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 14

               
               
               Conread position:219-325
               
               
               Cow position:chr16:47274511-47274617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:87
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:219-326
               
               
               Cow position:chr16:24635999-24636104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:89
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:219-389
               
               
               Cow position:chr16:11775785-11775957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):94, 13

               
               
               Conread position:219-406
               
               
               Cow position:chr16:24672650-24672843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):115, 12

               
               
               Conread position:219-416
               
               
               Cow position:chr16:42253194-42253391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):90, 18

               
               
               Conread position:219-420
               
               
               Cow position:chr16:28199239-28199033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):79, 22

               
               
               Conread position:219-438
               
               
               Cow position:chr16:23718762-23718989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):99, 9

               
               
               Conread position:219-545
               
               
               Cow position:chr16:54226403-54226721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):48, 10

               
               
               Conread position:219-555
               
               
               Cow position:chr16:7583608-7583264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:251
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):100, 12

               
               
               Conread position:219-614
               
               
               Cow position:chr16:20205672-20205260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 33

               
               
               Conread position:219-624
               
               
               Cow position:chr16:8493776-8494194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:277
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):88, 139

               
               
               Conread position:219-627
               
               
               Cow position:chr16:16597770-16597357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:279
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):74, 10

               
               
               Conread position:219-632
               
               
               Cow position:chr16:8065673-8066091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 13

               
               
               Conread position:219-632
               
               
               Cow position:chr16:18353740-18354162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 56

               
               
               Conread position:219-632
               
               
               Cow position:chr16:34168805-34168385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:286
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):15, 32

               
               
               Conread position:219-632
               
               
               Cow position:chr16:35758414-35758003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 56

               
               
               Conread position:219-632
               
               
               Cow position:chr16:48095556-48095974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:279
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):101, 190

               
               
               Conread position:219-632
               
               
               Cow position:chr16:56082151-56082570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 10

               
               
               Conread position:219-645
               
               
               Cow position:chr16:14106856-14106424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 17

               
               
               Conread position:220-406
               
               
               Cow position:chr16:22738968-22739151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:220-624
               
               
               Cow position:chr16:45813487-45813903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:277
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):92, 12

               
               
               Conread position:220-632
               
               
               Cow position:chr16:13698729-13698298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 12

               
               
               Conread position:220-632
               
               
               Cow position:chr16:23822814-23823229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:287
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):11, 59

               
               
               Conread position:220-632
               
               
               Cow position:chr16:49125979-49126394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 12

               
               
               Conread position:220-632
               
               
               Cow position:chr16:53508782-53509200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:297
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):72, 11

               
               
               Conread position:221-539
               
               
               Cow position:chr16:4851903-4852233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):7, 135

               
               
               Conread position:221-572
               
               
               Cow position:chr16:36120783-36121129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):18, 87

               
               
               Conread position:221-614
               
               
               Cow position:chr16:22808363-22808743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:265
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):113, 85

               
               
               Conread position:222-527
               
               
               Cow position:chr16:36286476-36286784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:205
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):16, 132

               
               
               Conread position:222-585
               
               
               Cow position:chr16:27723420-27723053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:252
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):183, 20

               
               
               Conread position:222-620
               
               
               Cow position:chr16:48493374-48492985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:275
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):16, 79

               
               
               Conread position:222-625
               
               
               Cow position:chr16:7542497-7542086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 85

               
               
               Conread position:222-630
               
               
               Cow position:chr16:42241911-42242327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:286
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):25, 123

               
               
               Conread position:222-643
               
               
               Cow position:chr16:50906688-50906245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:294
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):97, 139

               
               
               Conread position:223-624
               
               
               Cow position:chr16:53428464-53428051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:280
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):14, 132

               
               
               Conread position:223-627
               
               
               Cow position:chr16:42444370-42443947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 247

               
               
               Conread position:224-470
               
               
               Cow position:chr16:11359356-11359101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:224-632
               
               
               Cow position:chr16:7151964-7152383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 40

               
               
               Conread position:224-632
               
               
               Cow position:chr16:8322788-8323196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):186, 27

               
               
               Conread position:224-632
               
               
               Cow position:chr16:49229566-49229978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 42

               
               
               Conread position:224-662
               
               
               Cow position:chr16:49336428-49335987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 129

               
               
               Conread position:225-624
               
               
               Cow position:chr16:11815383-11815808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:279
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):58, 134

               
               
               Conread position:226-460
               
               
               Cow position:chr16:28444280-28444528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):24, 134

               
               
               Conread position:227-449
               
               
               Cow position:chr16:18047947-18048182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):92, 124

               
               
               Conread position:227-632
               
               
               Cow position:chr16:45047450-45047834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:279
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):187, 92

               
               
               Conread position:228-403
               
               
               Cow position:chr16:18572850-18573031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):8, 120

               
               
               Conread position:228-406
               
               
               Cow position:chr16:20743111-20743294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):8, 39

               
               
               Conread position:228-412
               
               
               Cow position:chr16:17180363-17180174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):98, 35

               
               
               Conread position:228-420
               
               
               Cow position:chr16:9730000-9730202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):8, 20

               
               
               Conread position:228-428
               
               
               Cow position:chr16:56595183-56595393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:228-597
               
               
               Cow position:chr16:34153365-34153749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:265
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):91, 51

               
               
               Conread position:228-622
               
               
               Cow position:chr16:45554638-45554238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:258
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):180, 86

               
               
               Conread position:228-630
               
               
               Cow position:chr16:19756575-19756996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:297
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):39, 200

               
               
               Conread position:228-631
               
               
               Cow position:chr16:1548677-1549087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 126

               
               
               Conread position:228-631
               
               
               Cow position:chr16:9615010-9615444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:302
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):8, 132

               
               
               Conread position:228-631
               
               
               Cow position:chr16:43661634-43661244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:287
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):178, 16

               
               
               Conread position:228-632
               
               
               Cow position:chr16:8193660-8193235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:299
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):80, 35

               
               
               Conread position:228-632
               
               
               Cow position:chr16:20476739-20476326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 75

               
               
               Conread position:228-632
               
               
               Cow position:chr16:31977981-31978398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:281
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):8, 42

               
               
               Conread position:228-645
               
               
               Cow position:chr16:29557420-29557854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 177

               
               
               Conread position:228-645
               
               
               Cow position:chr16:44210356-44210773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:289
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):93, 23

               
               
               Conread position:229-629
               
               
               Cow position:chr16:16264915-16265309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:278
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):181, 57

               
               
               Conread position:230-631
               
               
               Cow position:chr16:15824239-15824651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:275
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):39, 130

               
               
               Conread position:232-395
               
               
               Cow position:chr16:49252366-49252525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:232-405
               
               
               Cow position:chr16:4102642-4102810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:232-408
               
               
               Cow position:chr16:50569460-50569281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):73, 112

               
               
               Conread position:232-420
               
               
               Cow position:chr16:11653330-11653144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:232-420
               
               
               Cow position:chr16:20614696-20614506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):101, 163

               
               
               Conread position:232-425
               
               
               Cow position:chr16:56912487-56912688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):67, 26

               
               
               Conread position:232-445
               
               
               Cow position:chr16:39516396-39516621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):86, 126

               
               
               Conread position:232-452
               
               
               Cow position:chr16:17283642-17283416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):9, 92

               
               
               Conread position:232-487
               
               
               Cow position:chr16:42432917-42433178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):72, 107

               
               
               Conread position:232-507
               
               
               Cow position:chr16:50931333-50931601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):117, 67

               
               
               Conread position:232-539
               
               
               Cow position:chr16:13483376-13483690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:212
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):89, 53

               
               
               Conread position:232-575
               
               
               Cow position:chr16:42398689-42399052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:241
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):86, 128

               
               
               Conread position:232-580
               
               
               Cow position:chr16:29712616-29712262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:248
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):81, 121

               
               
               Conread position:232-593
               
               
               Cow position:chr16:14974368-14974703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:245
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):182, 29

               
               
               Conread position:232-615
               
               
               Cow position:chr16:24855734-24855347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:246
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):104, 236

               
               
               Conread position:232-622
               
               
               Cow position:chr16:52274935-52275330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 73

               
               
               Conread position:232-624
               
               
               Cow position:chr16:7011272-7010868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:267
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):85, 128

               
               
               Conread position:232-628
               
               
               Cow position:chr16:52170253-52169860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:258
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):89, 66

               
               
               Conread position:232-629
               
               
               Cow position:chr16:50282235-50282638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:270
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):63, 31

               
               
               Conread position:232-630
               
               
               Cow position:chr16:46552993-46552610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:274
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):65, 112

               
               
               Conread position:232-631
               
               
               Cow position:chr16:48385217-48385611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):216, 29

               
               
               Conread position:232-631
               
               
               Cow position:chr16:51697275-51696886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:269
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):176, 68

               
               
               Conread position:232-632
               
               
               Cow position:chr16:820451-820041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 237

               
               
               Conread position:232-632
               
               
               Cow position:chr16:2751174-2750781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:281
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):98, 38

               
               
               Conread position:232-632
               
               
               Cow position:chr16:8025669-8026055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):182, 67

               
               
               Conread position:232-632
               
               
               Cow position:chr16:12360787-12361182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:276
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):150, 39

               
               
               Conread position:232-632
               
               
               Cow position:chr16:21451050-21450638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:282
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):94, 127

               
               
               Conread position:232-632
               
               
               Cow position:chr16:23472942-23472541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 88

               
               
               Conread position:232-632
               
               
               Cow position:chr16:29096117-29095744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:269
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):77, 112

               
               
               Conread position:232-632
               
               
               Cow position:chr16:29655514-29655115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:279
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):169, 60

               
               
               Conread position:232-632
               
               
               Cow position:chr16:33299597-33299181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:276
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):96, 227

               
               
               Conread position:232-632
               
               
               Cow position:chr16:47820774-47820361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:280
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):55, 175

               
               
               Conread position:232-632
               
               
               Cow position:chr16:48956999-48956587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:268
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):28, 180

               
               
               Conread position:232-632
               
               
               Cow position:chr16:51598413-51598813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:271
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):52, 181

               
               
               Conread position:232-632
               
               
               Cow position:chr16:53553516-53553927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:272
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):97, 234

               
               
               Conread position:232-633
               
               
               Cow position:chr16:7429582-7429167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:273
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):34, 127

               
               
               Conread position:232-633
               
               
               Cow position:chr16:22841847-22842264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:296
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):75, 156

               
               
               Conread position:232-635
               
               
               Cow position:chr16:9933360-9932947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 171

               
               
               Conread position:232-636
               
               
               Cow position:chr16:31117419-31117837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:274
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):89, 12

               
               
               Conread position:232-659
               
               
               Cow position:chr16:28395891-28396331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:297
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):171, 31

               
               
               Conread position:233-534
               
               
               Cow position:chr16:20872210-20871915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):91, 26

               
               
               Conread position:233-627
               
               
               Cow position:chr16:16235932-16236333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:275
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):80, 45

               
               
               Conread position:233-631
               
               
               Cow position:chr16:19670159-19670541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:264
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):78, 109

               
               
               Conread position:233-631
               
               
               Cow position:chr16:40333135-40333534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:271
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):10, 67

               
               
               Conread position:233-632
               
               
               Cow position:chr16:8315013-8315387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:268
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):172, 65

               
               
               Conread position:233-632
               
               
               Cow position:chr16:12085610-12085991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:264
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):350, 62

               
               
               Conread position:233-645
               
               
               Cow position:chr16:14361293-14360881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:273
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):181, 7

               
               
               Conread position:234-420
               
               
               Cow position:chr16:40029687-40029878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):90, 58

               
               
               Conread position:234-609
               
               
               Cow position:chr16:51501126-51500749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:253
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):82, 212

               
               
               Conread position:234-632
               
               
               Cow position:chr16:48145207-48145609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 120

               
               
               Conread position:234-645
               
               
               Cow position:chr16:238464-238038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 113

               
               
               Conread position:236-420
               
               
               Cow position:chr16:17474952-17474771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):178, 65

               
               
               Conread position:236-431
               
               
               Cow position:chr16:9959025-9958823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):88, 111

               
               
               Conread position:236-621
               
               
               Cow position:chr16:14685195-14685588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 179

               
               
               Conread position:236-631
               
               
               Cow position:chr16:41530112-41530500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 28

               
               
               Conread position:236-632
               
               
               Cow position:chr16:11008524-11008132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 49

               
               
               Conread position:236-632
               
               
               Cow position:chr16:26372767-26373161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:282
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):172, 54

               
               
               Conread position:236-632
               
               
               Cow position:chr16:29766516-29766133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:276
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):61, 105

               
               
               Conread position:236-632
               
               
               Cow position:chr16:50688703-50688311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:258
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):172, 41

               
               
               Conread position:237-627
               
               
               Cow position:chr16:15761956-15762368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:275
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):61, 126

               
               
               Conread position:238-632
               
               
               Cow position:chr16:29038111-29037703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:292
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):83, 121

               
               
               Conread position:240-643
               
               
               Cow position:chr16:8068642-8069040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:265
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):189, 35

               
               
               Conread position:241-632
               
               
               Cow position:chr16:8841088-8840682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:277
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):36, 120

               
               
               Conread position:242-625
               
               
               Cow position:chr16:27014072-27013699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:264
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):97, 43

               
               
               Conread position:242-631
               
               
               Cow position:chr16:18757645-18758053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:282
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):75, 13

               
               
               Conread position:242-632
               
               
               Cow position:chr16:5415555-5415963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:269
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):25, 167

               
               
               Conread position:242-632
               
               
               Cow position:chr16:16402129-16402537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:276
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):56, 185

               
               
               Conread position:242-632
               
               
               Cow position:chr16:47662916-47662503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:288
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):77, 22

               
               
               Conread position:242-645
               
               
               Cow position:chr16:39165423-39165022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:271
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):70, 99

               
               
               Conread position:243-405
               
               
               Cow position:chr16:33632489-33632654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:243-613
               
               
               Cow position:chr16:41689861-41689516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:254
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):190, 67

               
               
               Conread position:243-628
               
               
               Cow position:chr16:11957389-11957790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 105

               
               
               Conread position:243-631
               
               
               Cow position:chr16:54664610-54665012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:270
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):23, 96

               
               
               Conread position:243-632
               
               
               Cow position:chr16:13712753-13713124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:267
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):70, 20

               
               
               Conread position:243-632
               
               
               Cow position:chr16:17143127-17142722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:284
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):64, 174

               
               
               Conread position:243-632
               
               
               Cow position:chr16:18206144-18205761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 101

               
               
               Conread position:243-632
               
               
               Cow position:chr16:41752392-41752783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:261
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):111, 57

               
               
               Conread position:243-632
               
               
               Cow position:chr16:48398068-48398456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:258
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):76, 245

               
               
               Conread position:246-404
               
               
               Cow position:chr16:51143985-51143821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):74, 101

               
               
               Conread position:246-418
               
               
               Cow position:chr16:15949322-15949500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):73, 109

               
               
               Conread position:246-419
               
               
               Cow position:chr16:9079517-9079346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:246-419
               
               
               Cow position:chr16:18953768-18953591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):57, 165

               
               
               Conread position:246-436
               
               
               Cow position:chr16:31241106-31241304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):73, 112

               
               
               Conread position:246-452
               
               
               Cow position:chr16:7812879-7812668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):73, 113

               
               
               Conread position:246-579
               
               
               Cow position:chr16:12320409-12320065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):78, 233

               
               
               Conread position:246-613
               
               
               Cow position:chr16:42201091-42200699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:270
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):75, 226

               
               
               Conread position:246-621
               
               
               Cow position:chr16:13447455-13447060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:253
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):96, 184

               
               
               Conread position:246-632
               
               
               Cow position:chr16:4910336-4910741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 105

               
               
               Conread position:246-632
               
               
               Cow position:chr16:7702701-7702321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:261
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):61, 25

               
               
               Conread position:246-632
               
               
               Cow position:chr16:14568305-14568695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 108

               
               
               Conread position:246-632
               
               
               Cow position:chr16:22850514-22850118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:275
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):63, 105

               
               
               Conread position:246-632
               
               
               Cow position:chr16:24703036-24702642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:266
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):73, 14

               
               
               Conread position:246-632
               
               
               Cow position:chr16:33646201-33645804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:265
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):67, 204

               
               
               Conread position:246-645
               
               
               Cow position:chr16:29380443-29380031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:281
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):66, 119

               
               
               Conread position:247-632
               
               
               Cow position:chr16:26676504-26676900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 79

               
               
               Conread position:247-632
               
               
               Cow position:chr16:45676689-45677062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:265
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):177, 16

               
               
               Conread position:248-451
               
               
               Cow position:chr16:48917659-48917452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):78, 167

               
               
               Conread position:248-633
               
               
               Cow position:chr16:28192235-28191856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):250, 63

               
               
               Conread position:249-632
               
               
               Cow position:chr16:4192248-4192629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 110

               
               
               Conread position:250-632
               
               
               Cow position:chr16:3614919-3614538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:257
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):65, 32

               
               
               Conread position:251-438
               
               
               Cow position:chr16:13252138-13252322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:251-633
               
               
               Cow position:chr16:5896602-5896208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:271
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):19, 100

               
               
               Conread position:258-622
               
               
               Cow position:chr16:37452440-37452818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 98

               
               
               Conread position:262-632
               
               
               Cow position:chr16:51112711-51113087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:252
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):59, 87

               
               
               Conread position:264-631
               
               
               Cow position:chr16:43505661-43506007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:251
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):158, 35

               
               
               Conread position:265-626
               
               
               Cow position:chr16:17981981-17982348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:257
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):49, 78

               
               
               Conread position:266-631
               
               
               Cow position:chr16:33226372-33226741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:244
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):56, 120

               
               
               Conread position:266-645
               
               
               Cow position:chr16:11615077-11615451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:247
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):49, 149

               
               
               Conread position:269-633
               
               
               Cow position:chr16:48086710-48087082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:260
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):40, 76

               
               
               Conread position:271-624
               
               
               Cow position:chr16:45610149-45609785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:245
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):57, 88

               
               
               Conread position:271-631
               
               
               Cow position:chr16:43105362-43105722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:251
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):24, 58

               
               
               Conread position:271-632
               
               
               Cow position:chr16:5725615-5725264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:244
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):137, 28

               
               
               Conread position:271-632
               
               
               Cow position:chr16:43276170-43275812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 33

               
               
               Conread position:271-632
               
               
               Cow position:chr16:48006333-48006701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):55, 191

               
               
               Conread position:277-624
               
               
               Cow position:chr16:42753000-42752658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:233
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):48, 33

               
               
               Conread position:277-627
               
               
               Cow position:chr16:33482604-33482233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):51, 86

               
               
               Conread position:280-632
               
               
               Cow position:chr16:35188392-35188044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):134, 34

               
               
               Conread position:280-633
               
               
               Cow position:chr16:13195189-13195544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):21, 92

               
               
               Conread position:286-632
               
               
               Cow position:chr16:18402826-18402487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:235
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):17, 12

               
               
               Conread position:286-632
               
               
               Cow position:chr16:23871512-23871861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:246
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):38, 12

               
               
               Conread position:287-632
               
               
               Cow position:chr16:16096873-16096527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):8, 26

               
               
               Conread position:289-623
               
               
               Cow position:chr16:5257131-5256795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:227
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):119, 10

               
               
               Conread position:289-633
               
               
               Cow position:chr16:16548746-16548400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:240
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):11, 53

               
               
               Conread position:297-609
               
               
               Cow position:chr16:17289074-17288754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):92, 20

               
               
               Conread position:297-632
               
               
               Cow position:chr16:19408398-19408722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):23, 113

               
               
               Conread position:297-636
               
               
               Cow position:chr16:12060546-12060198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):17, 146

               
               
               Conread position:298-631
               
               
               Cow position:chr16:32132635-32132319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):34, 46

               
               
               Conread position:298-632
               
               
               Cow position:chr16:13611322-13611660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:244
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):23, 48

               
               
               Conread position:298-645
               
               
               Cow position:chr16:5636711-5636369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):52, 22

               
               
               Conread position:299-597
               
               
               Cow position:chr16:7550096-7549793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:203
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):22, 15

               
               
               Conread position:299-630
               
               
               Cow position:chr16:25965625-25965298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:229
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):110, 50

               
               
               Conread position:299-632
               
               
               Cow position:chr16:5364033-5363682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:299-632
               
               
               Cow position:chr16:24826199-24825860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):115, 42

               
               
               Conread position:299-632
               
               
               Cow position:chr16:40562359-40562017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):14, 23

               
               
               Conread position:299-632
               
               
               Cow position:chr16:56875536-56875863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):24, 44

               
               
               Conread position:300-614
               
               
               Cow position:chr16:46627713-46628028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:210
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):31, 13

               
               
               Conread position:300-632
               
               
               Cow position:chr16:53627300-53627633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):29, 44

               
               
               Conread position:301-593
               
               
               Cow position:chr16:52133392-52133686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:203
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):12, 41

               
               
               Conread position:301-632
               
               
               Cow position:chr16:11105680-11105339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:225
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):9, 107

               
               
               Conread position:303-632
               
               
               Cow position:chr16:11102699-11103035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:231
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):102, 38

               
               
               Conread position:314-605
               
               
               Cow position:chr16:8076391-8076691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:200
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):94, 27

               
               
               Conread position:317-630
               
               
               Cow position:chr16:48494445-48494764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):71, 228

               
               
               Conread position:317-632
               
               
               Cow position:chr16:13969261-13969589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):13, 35

               
               
               Conread position:318-593
               
               
               Cow position:chr16:4902695-4902418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:190
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):87, 31

               
               
               Conread position:319-631
               
               
               Cow position:chr16:9973392-9973711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:212
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):15, 31

               
               
               Conread position:319-631
               
               
               Cow position:chr16:29608616-29608309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):179, 88

               
               
               Conread position:319-632
               
               
               Cow position:chr16:4059462-4059149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:211
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):31, 24

               
               
               Conread position:319-632
               
               
               Cow position:chr16:30715611-30715282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:219
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):82, 166

               
               
               Conread position:319-632
               
               
               Cow position:chr16:32781470-32781152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):84, 137

               
               
               Conread position:319-632
               
               
               Cow position:chr16:48340587-48340902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):7, 23

               
               
               Conread position:320-631
               
               
               Cow position:chr16:23738286-23737974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):88, 21

               
               
               Conread position:320-631
               
               
               Cow position:chr16:37062292-37062604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):113, 78

               
               
               Conread position:320-632
               
               
               Cow position:chr16:4626285-4626605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):82, 147

               
               
               Conread position:320-632
               
               
               Cow position:chr16:5845775-5845460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):98, 21

               
               
               Conread position:320-632
               
               
               Cow position:chr16:7499156-7498858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:211
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):30, 13

               
               
               Conread position:320-632
               
               
               Cow position:chr16:51869745-51869428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:221
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):11, 30

               
               
               Conread position:320-637
               
               
               Cow position:chr16:53830486-53830804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):15, 22

               
               
               Conread position:321-621
               
               
               Cow position:chr16:17627034-17626731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):46, 20

               
               
               Conread position:321-645
               
               
               Cow position:chr16:30096031-30096353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):102, 28

               
               
               Conread position:323-539
               
               
               Cow position:chr16:18052432-18052214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):81, 26

               
               
               Conread position:323-585
               
               
               Cow position:chr16:25380393-25380659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):87, 18

               
               
               Conread position:323-606
               
               
               Cow position:chr16:38119348-38119633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):148, 25

               
               
               Conread position:323-628
               
               
               Cow position:chr16:54342088-54341793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):55, 26

               
               
               Conread position:323-630
               
               
               Cow position:chr16:42633642-42633956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):85, 26

               
               
               Conread position:323-631
               
               
               Cow position:chr16:14758837-14758521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):37, 18

               
               
               Conread position:323-631
               
               
               Cow position:chr16:22804496-22804791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):85, 18

               
               
               Conread position:323-631
               
               
               Cow position:chr16:30036889-30037204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:224
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):86, 18

               
               
               Conread position:323-631
               
               
               Cow position:chr16:52889309-52889619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:230
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):89, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr16:570817-571127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):110, 95

               
               
               Conread position:323-632
               
               
               Cow position:chr16:20633774-20634088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:219
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):50, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr16:43800817-43801119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:215
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):91, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr16:49169279-49169593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 26

               
               
               Conread position:323-632
               
               
               Cow position:chr16:52854920-52855230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):50, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr16:53086239-53086535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:223
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):91, 18

               
               
               Conread position:323-637
               
               
               Cow position:chr16:35623148-35623459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):171, 18

               
               
               Conread position:325-632
               
               
               Cow position:chr16:28922873-28922578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):28, 14

               
               
               Conread position:327-632
               
               
               Cow position:chr16:28833941-28833632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:219
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):79, 22

               
               
               Conread position:331-632
               
               
               Cow position:chr16:12633978-12633683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:218
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):83, 15

               
               
               Conread position:333-632
               
               
               Cow position:chr16:32327750-32327442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):75, 8

               
               
               Conread position:333-632
               
               
               Cow position:chr16:53891695-53891991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):148, 8

               
               
               Conread position:338-588
               
               
               Cow position:chr16:50521564-50521312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):67, 13

               
               
               Conread position:347-632
               
               
               Cow position:chr16:13232872-13233155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:198
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):59, 13

               
               
               Conread position:351-630
               
               
               Cow position:chr16:594149-594437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:191
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:351-631
               
               
               Cow position:chr16:5351767-5352040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):52, 65

               
               
               Conread position:351-632
               
               
               Cow position:chr16:13752057-13752333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):63, 56

               
               
               Conread position:351-632
               
               
               Cow position:chr16:47643489-47643209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):50, 120

               
               
               Conread position:352-590
               
               
               Cow position:chr16:3246131-3246374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):56, 103

               
               
               Conread position:352-613
               
               
               Cow position:chr16:54084110-54083843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):55, 100

               
               
               Conread position:352-627
               
               
               Cow position:chr16:42217616-42217895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):62, 57

               
               
               Conread position:352-632
               
               
               Cow position:chr16:11274977-11274699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):63, 55

               
               
               Conread position:356-645
               
               
               Cow position:chr16:33790768-33791067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):90, 28

               
               
               Conread position:357-631
               
               
               Cow position:chr16:37380339-37380062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):48, 103

               
               
               Conread position:361-615
               
               
               Cow position:chr16:4981312-4981574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):44, 221

               
               
               Conread position:362-631
               
               
               Cow position:chr16:601010-600736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:191
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):52, 43

               
               
               Conread position:364-632
               
               
               Cow position:chr16:22860707-22860969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):101, 43

               
               
               Conread position:366-624
               
               
               Cow position:chr16:56787716-56787980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):39, 85

               
               
               Conread position:366-630
               
               
               Cow position:chr16:29822876-29823134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):38, 60

               
               
               Conread position:367-622
               
               
               Cow position:chr16:39238005-39237743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):36, 85

               
               
               Conread position:367-632
               
               
               Cow position:chr16:3634175-3633905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):41, 224

               
               
               Conread position:367-632
               
               
               Cow position:chr16:11568064-11568323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):41, 27

               
               
               Conread position:368-628
               
               
               Cow position:chr16:24672300-24672567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):40, 16

               
               
               Conread position:370-632
               
               
               Cow position:chr16:45535231-45534973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):25, 44

               
               
               Conread position:371-630
               
               
               Cow position:chr16:11619804-11619546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):34, 96

               
               
               Conread position:371-632
               
               
               Cow position:chr16:30143151-30143423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):38, 81

               
               
               Conread position:373-631
               
               
               Cow position:chr16:21905215-21904953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):36, 81

               
               
               Conread position:375-632
               
               
               Cow position:chr16:26342317-26342067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):94, 32

               
               
               Conread position:379-628
               
               
               Cow position:chr16:24228306-24228556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):29, 6

               
               
               Conread position:380-632
               
               
               Cow position:chr16:46434070-46434329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):34, 27

               
               
               Conread position:385-631
               
               
               Cow position:chr16:4145104-4144855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):29, 22

               
               
               Conread position:388-632
               
               
               Cow position:chr16:27249439-27249199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):26, 7

               
               
               Conread position:392-632
               
               
               Cow position:chr16:13791551-13791303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:185
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):16, 63

               
               
               Conread position:392-632
               
               
               Cow position:chr16:30706139-30705896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):24, 65

               
               
               Conread position:400-585
               
               
               Cow position:chr16:9136203-9136013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:402-631
               
               
               Cow position:chr16:4712920-4712692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):113, 44

               
               
               Conread position:402-632
               
               
               Cow position:chr16:22868158-22868385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:165
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):141, 46

               
               
               Conread position:405-632
               
               
               Cow position:chr16:4503300-4503070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):17, 5

               
               
               Conread position:409-665
               
               
               Cow position:chr16:7928603-7928349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):17, 44

               
               
               Conread position:410-631
               
               
               Cow position:chr16:31159560-31159787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):87, 43

               
               
               Conread position:410-632
               
               
               Cow position:chr16:11620800-11621013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:162
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):87, 41

               
               
               Conread position:411-625
               
               
               Cow position:chr16:26501169-26500957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):85, 45

               
               
               Conread position:411-631
               
               
               Cow position:chr16:42253547-42253782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:411-632
               
               
               Cow position:chr16:44973505-44973286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):89, 40

               
               
               Conread position:412-632
               
               
               Cow position:chr16:16177828-16177608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):53, 39

               
               
               Conread position:413-635
               
               
               Cow position:chr16:14028620-14028832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):76, 33

               
               
               Conread position:414-632
               
               
               Cow position:chr16:9790623-9790841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):84, 39

               
               
               Conread position:431-632
               
               
               Cow position:chr16:16424611-16424814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):38, 9

               
               
               Conread position:437-632
               
               
               Cow position:chr16:53613291-53613088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:444-631
               
               
               Cow position:chr16:43804471-43804288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):99, 14

               
               
               Conread position:447-632
               
               
               Cow position:chr16:51530991-51531183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):51, 11

               
               
               Conread position:448-632
               
               
               Cow position:chr16:4103183-4103367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):57, 175

               
               
               Conread position:450-633
               
               
               Cow position:chr16:10462548-10462728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:451-632
               
               
               Cow position:chr16:30939708-30939523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:455-632
               
               
               Cow position:chr16:47620350-47620170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:458-632
               
               
               Cow position:chr16:33752163-33751988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):40, 114

               
               
               Conread position:463-632
               
               
               Cow position:chr16:39417156-39417327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:463-632
               
               
               Cow position:chr16:51399784-51399956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):35, 76

               
               
               Conread position:469-628
               
               
               Cow position:chr16:24403696-24403524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:470-632
               
               
               Cow position:chr16:25287733-25287901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:470-632
               
               
               Cow position:chr16:30311155-30311319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):28, 128

               
               
               Conread position:473-632
               
               
               Cow position:chr16:29399952-29399784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:476-632
               
               
               Cow position:chr16:589968-590119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):13, 94

               
               
               Conread position:486-635
               
               
               Cow position:chr16:26846169-26846021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):144, 0

               
               
               Conread position:486-645
               
               
               Cow position:chr16:33777748-33777596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:492-645
               
               
               Cow position:chr16:47336662-47336507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:493-623
               
               
               Cow position:chr16:49404222-49404356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:493-630
               
               
               Cow position:chr16:35168658-35168517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:493-632
               
               
               Cow position:chr16:39394506-39394366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):44, 56

               
               
               Conread position:493-635
               
               
               Cow position:chr16:47017315-47017458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:494-614
               
               
               Cow position:chr16:10352799-10352675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:98
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:495-628
               
               
               Cow position:chr16:52182199-52182068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):43, 82

               
               
               Conread position:495-629
               
               
               Cow position:chr16:11422238-11422104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:495-629
               
               
               Cow position:chr16:35937265-35937129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):83, 52

               
               
               Conread position:495-632
               
               
               Cow position:chr16:5293587-5293452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:112
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):88, 23

               
               
               Conread position:495-632
               
               
               Cow position:chr16:7082806-7082943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):43, 88

               
               
               Conread position:495-632
               
               
               Cow position:chr16:25484292-25484157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):100, 68

               
               
               Conread position:495-632
               
               
               Cow position:chr16:33235204-33235345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr16:39514148-39514288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):88, 122

               
               
               Conread position:495-632
               
               
               Cow position:chr16:42092456-42092586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr16:48370023-48370158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):101, 20

               
               
               Conread position:495-632
               
               
               Cow position:chr16:49141637-49141768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr16:51578490-51578630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):88, 12

               
               
               Conread position:495-645
               
               
               Cow position:chr16:901955-902110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:495-645
               
               
               Cow position:chr16:39616670-39616520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):22, 48

               
               
               Conread position:496-632
               
               
               Cow position:chr16:18679123-18678987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):41, 53

               
               
               Conread position:497-629
               
               
               Cow position:chr16:6379182-6379317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:498-632
               
               
               Cow position:chr16:8807166-8807300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):45, 98

               
               
               Conread position:499-624
               
               
               Cow position:chr16:15867805-15867931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:499-632
               
               
               Cow position:chr16:8481164-8481301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:499-632
               
               
               Cow position:chr16:24148081-24147944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:500-632
               
               
               Cow position:chr16:16232009-16231872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:501-646
               
               
               Cow position:chr16:48191080-48191226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):137, 0

               
               
               Conread position:503-632
               
               
               Cow position:chr16:8279867-8279999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):84, 62

               
               
               Conread position:503-632
               
               
               Cow position:chr16:33507986-33507853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:505-631
               
               
               Cow position:chr16:29067086-29066959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:105
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:505-637
               
               
               Cow position:chr16:4277796-4277928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:110
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):38, 129

               
               
               Conread position:528-632
               
               
               Cow position:chr16:54227830-54227936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:88
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:189-420
               
               
               Cow position:chr17:3364874-3364635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):14, 204

               
               
               Conread position:193-593
               
               
               Cow position:chr17:32280947-32280539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:284
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):126, 166

               
               
               Conread position:193-632
               
               
               Cow position:chr17:32278625-32279076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 166

               
               
               Conread position:195-395
               
               
               Cow position:chr17:32978660-32978862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):118, 157

               
               
               Conread position:200-625
               
               
               Cow position:chr17:7143129-7142702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 5

               
               
               Conread position:200-631
               
               
               Cow position:chr17:9854252-9853818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:294
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):118, 31

               
               
               Conread position:200-645
               
               
               Cow position:chr17:12536210-12536650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):205, 32

               
               
               Conread position:206-517
               
               
               Cow position:chr17:7571371-7571048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):115, 26

               
               
               Conread position:206-632
               
               
               Cow position:chr17:8279466-8279878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:283
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):32, 57

               
               
               Conread position:206-632
               
               
               Cow position:chr17:12447140-12447568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:284
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):61, 19

               
               
               Conread position:207-389
               
               
               Cow position:chr17:9932046-9932223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:207-437
               
               
               Cow position:chr17:36712450-36712689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):121, 152

               
               
               Conread position:207-632
               
               
               Cow position:chr17:8836685-8837118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:289
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):30, 52

               
               
               Conread position:207-635
               
               
               Cow position:chr17:38362748-38363146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:292
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):282, 47

               
               
               Conread position:208-411
               
               
               Cow position:chr17:5761887-5762102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):99, 23

               
               
               Conread position:210-420
               
               
               Cow position:chr17:39964141-39963923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):14, 205

               
               
               Conread position:210-443
               
               
               Cow position:chr17:26561874-26562115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):10, 150

               
               
               Conread position:210-631
               
               
               Cow position:chr17:33933485-33933905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:277
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):12, 262

               
               
               Conread position:210-650
               
               
               Cow position:chr17:36203222-36203677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:308
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):20, 27

               
               
               Conread position:211-405
               
               
               Cow position:chr17:32332831-32333030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):115, 58

               
               
               Conread position:211-411
               
               
               Cow position:chr17:6761591-6761792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):20, 126

               
               
               Conread position:211-496
               
               
               Cow position:chr17:18267519-18267224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:204
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):115, 20

               
               
               Conread position:211-589
               
               
               Cow position:chr17:20884789-20884397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:282
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):21, 55

               
               
               Conread position:212-325
               
               
               Cow position:chr17:18673778-18673890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:92
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):24, 15

               
               
               Conread position:212-405
               
               
               Cow position:chr17:13976448-13976650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):6, 75

               
               
               Conread position:212-632
               
               
               Cow position:chr17:25815851-25815440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):142, 20

               
               
               Conread position:213-617
               
               
               Cow position:chr17:3468012-3467615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:262
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):20, 201

               
               
               Conread position:213-629
               
               
               Cow position:chr17:16371519-16371085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 18

               
               
               Conread position:214-496
               
               
               Cow position:chr17:28982435-28982148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):113, 131

               
               
               Conread position:214-519
               
               
               Cow position:chr17:9770764-9770455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):22, 145

               
               
               Conread position:214-611
               
               
               Cow position:chr17:14004087-14003669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 146

               
               
               Conread position:214-632
               
               
               Cow position:chr17:11664321-11664760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:299
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):95, 16

               
               
               Conread position:215-447
               
               
               Cow position:chr17:21718741-21718982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):105, 17

               
               
               Conread position:215-628
               
               
               Cow position:chr17:36454520-36454931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:285
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):22, 145

               
               
               Conread position:215-632
               
               
               Cow position:chr17:5224634-5224234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:288
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):199, 50

               
               
               Conread position:215-632
               
               
               Cow position:chr17:7132166-7132624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:317
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:215-632
               
               
               Cow position:chr17:33288398-33288823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:275
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):32, 109

               
               
               Conread position:216-315
               
               
               Cow position:chr17:12958154-12958254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:83
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:216-327
               
               
               Cow position:chr17:4271101-4271214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:93
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:216-403
               
               
               Cow position:chr17:21236783-21236585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):15, 136

               
               
               Conread position:216-412
               
               
               Cow position:chr17:32220626-32220831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):103, 131

               
               
               Conread position:216-414
               
               
               Cow position:chr17:6978919-6979124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):21, 37

               
               
               Conread position:216-418
               
               
               Cow position:chr17:6787195-6786982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):105, 16

               
               
               Conread position:216-452
               
               
               Cow position:chr17:21039811-21039567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):105, 16

               
               
               Conread position:216-453
               
               
               Cow position:chr17:30194018-30194259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):145, 32

               
               
               Conread position:216-455
               
               
               Cow position:chr17:31559827-31559574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:171
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):103, 142

               
               
               Conread position:216-542
               
               
               Cow position:chr17:36814618-36814281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:238
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):103, 15

               
               
               Conread position:216-553
               
               
               Cow position:chr17:22128179-22127838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):20, 29

               
               
               Conread position:216-585
               
               
               Cow position:chr17:7802919-7803293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:258
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):103, 15

               
               
               Conread position:216-604
               
               
               Cow position:chr17:24928737-24928338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:264
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):12, 148

               
               
               Conread position:216-617
               
               
               Cow position:chr17:5280393-5280797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:280
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):11, 147

               
               
               Conread position:216-618
               
               
               Cow position:chr17:9965767-9966188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:290
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):87, 14

               
               
               Conread position:216-625
               
               
               Cow position:chr17:27058293-27058715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:284
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):96, 251

               
               
               Conread position:216-627
               
               
               Cow position:chr17:21959425-21959847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 139

               
               
               Conread position:216-631
               
               
               Cow position:chr17:17180304-17179868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:313
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):15, 63

               
               
               Conread position:216-632
               
               
               Cow position:chr17:1256239-1256673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:292
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):15, 145

               
               
               Conread position:216-632
               
               
               Cow position:chr17:5898270-5898694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:293
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):99, 15

               
               
               Conread position:216-632
               
               
               Cow position:chr17:6156293-6155872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:283
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):15, 59

               
               
               Conread position:216-632
               
               
               Cow position:chr17:6936420-6936832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:286
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):22, 163

               
               
               Conread position:216-632
               
               
               Cow position:chr17:11618847-11618411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 147

               
               
               Conread position:216-632
               
               
               Cow position:chr17:15102632-15103057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:283
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):21, 219

               
               
               Conread position:216-632
               
               
               Cow position:chr17:18490792-18490364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:277
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):17, 108

               
               
               Conread position:216-632
               
               
               Cow position:chr17:20234450-20234058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:294
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):198, 15

               
               
               Conread position:216-632
               
               
               Cow position:chr17:24587879-24587449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:283
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):105, 260

               
               
               Conread position:216-632
               
               
               Cow position:chr17:25189545-25189110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:294
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):11, 41

               
               
               Conread position:216-632
               
               
               Cow position:chr17:26000377-25999947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 135

               
               
               Conread position:216-632
               
               
               Cow position:chr17:29472716-29472306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:285
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):15, 53

               
               
               Conread position:216-632
               
               
               Cow position:chr17:32418861-32419287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:290
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):11, 17

               
               
               Conread position:216-636
               
               
               Cow position:chr17:42419958-42419558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:296
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):100, 15

               
               
               Conread position:216-638
               
               
               Cow position:chr17:12946103-12946539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:293
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):136, 124

               
               
               Conread position:217-397
               
               
               Cow position:chr17:30108686-30108508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):18, 81

               
               
               Conread position:217-414
               
               
               Cow position:chr17:25875654-25875445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):14, 134

               
               
               Conread position:217-426
               
               
               Cow position:chr17:10016532-10016318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):98, 133

               
               
               Conread position:217-454
               
               
               Cow position:chr17:7959432-7959189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):104, 20

               
               
               Conread position:217-537
               
               
               Cow position:chr17:11994765-11995105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:227
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):20, 11

               
               
               Conread position:217-539
               
               
               Cow position:chr17:1469623-1469301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):13, 83

               
               
               Conread position:217-589
               
               
               Cow position:chr17:32349319-32348948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:248
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):21, 127

               
               
               Conread position:217-611
               
               
               Cow position:chr17:25118138-25117742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:277
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):86, 11

               
               
               Conread position:217-613
               
               
               Cow position:chr17:21599424-21599835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:278
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):20, 144

               
               
               Conread position:217-620
               
               
               Cow position:chr17:18146443-18146025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 14

               
               
               Conread position:217-629
               
               
               Cow position:chr17:32027190-32027628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 137

               
               
               Conread position:217-630
               
               
               Cow position:chr17:40772083-40771663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 15

               
               
               Conread position:217-631
               
               
               Cow position:chr17:21243554-21243955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:270
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):179, 86

               
               
               Conread position:217-632
               
               
               Cow position:chr17:17222595-17222173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:295
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):109, 14

               
               
               Conread position:217-632
               
               
               Cow position:chr17:20932583-20932160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 13

               
               
               Conread position:217-632
               
               
               Cow position:chr17:24824502-24824083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:285
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):20, 47

               
               
               Conread position:218-381
               
               
               Cow position:chr17:243375-243217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):128, 76

               
               
               Conread position:218-386
               
               
               Cow position:chr17:26880288-26880455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):81, 116

               
               
               Conread position:218-412
               
               
               Cow position:chr17:19471522-19471716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):103, 10

               
               
               Conread position:218-420
               
               
               Cow position:chr17:15883927-15883715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):101, 13

               
               
               Conread position:218-420
               
               
               Cow position:chr17:16868021-16868224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):95, 143

               
               
               Conread position:218-420
               
               
               Cow position:chr17:26757190-26757404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):101, 144

               
               
               Conread position:218-438
               
               
               Cow position:chr17:15303719-15303952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):89, 128

               
               
               Conread position:218-450
               
               
               Cow position:chr17:45135660-45135894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):87, 71

               
               
               Conread position:218-451
               
               
               Cow position:chr17:9950401-9950646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):10, 143

               
               
               Conread position:218-451
               
               
               Cow position:chr17:12019305-12019534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):136, 81

               
               
               Conread position:218-483
               
               
               Cow position:chr17:25587210-25587475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):100, 49

               
               
               Conread position:218-552
               
               
               Cow position:chr17:25342488-25342829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:247
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):98, 13

               
               
               Conread position:218-621
               
               
               Cow position:chr17:13940062-13940480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:285
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):9, 145

               
               
               Conread position:218-623
               
               
               Cow position:chr17:26631553-26631976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:279
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):80, 143

               
               
               Conread position:218-629
               
               
               Cow position:chr17:34948891-34948475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:295
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):91, 130

               
               
               Conread position:218-631
               
               
               Cow position:chr17:12289156-12289583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 41

               
               
               Conread position:218-632
               
               
               Cow position:chr17:10458681-10459105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:289
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):75, 12

               
               
               Conread position:218-632
               
               
               Cow position:chr17:18720196-18720617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 67

               
               
               Conread position:218-632
               
               
               Cow position:chr17:20780778-20780341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:290
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):89, 19

               
               
               Conread position:218-632
               
               
               Cow position:chr17:23063978-23063543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:298
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):13, 143

               
               
               Conread position:218-632
               
               
               Cow position:chr17:24077643-24077233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 48

               
               
               Conread position:218-632
               
               
               Cow position:chr17:27274820-27274393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:275
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:218-632
               
               
               Cow position:chr17:30665525-30665103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 35

               
               
               Conread position:218-645
               
               
               Cow position:chr17:26818218-26818635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:288
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):122, 88

               
               
               Conread position:218-645
               
               
               Cow position:chr17:38615219-38614774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:294
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):16, 145

               
               
               Conread position:219-406
               
               
               Cow position:chr17:31570974-31570788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):18, 110

               
               
               Conread position:219-419
               
               
               Cow position:chr17:4817782-4817575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:161
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):88, 11

               
               
               Conread position:219-420
               
               
               Cow position:chr17:26225282-26225073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):19, 130

               
               
               Conread position:219-421
               
               
               Cow position:chr17:15154630-15154844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):18, 146

               
               
               Conread position:219-430
               
               
               Cow position:chr17:15355187-15354968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):107, 140

               
               
               Conread position:219-496
               
               
               Cow position:chr17:18818814-18818537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):86, 11

               
               
               Conread position:219-539
               
               
               Cow position:chr17:17193742-17193418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:220
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:219-541
               
               
               Cow position:chr17:9056445-9056779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:223
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):18, 128

               
               
               Conread position:219-617
               
               
               Cow position:chr17:24559545-24559145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 17

               
               
               Conread position:219-631
               
               
               Cow position:chr17:11277776-11278200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:292
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):108, 12

               
               
               Conread position:219-631
               
               
               Cow position:chr17:27795905-27795480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:302
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):102, 11

               
               
               Conread position:219-632
               
               
               Cow position:chr17:24149446-24149008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:299
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):12, 150

               
               
               Conread position:220-388
               
               
               Cow position:chr17:33154908-33155077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):91, 11

               
               
               Conread position:220-534
               
               
               Cow position:chr17:9824919-9824598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):79, 104

               
               
               Conread position:220-562
               
               
               Cow position:chr17:14652531-14652879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:252
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):17, 44

               
               
               Conread position:220-632
               
               
               Cow position:chr17:21738612-21739053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:305
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):17, 138

               
               
               Conread position:220-633
               
               
               Cow position:chr17:11397919-11397496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 138

               
               
               Conread position:220-635
               
               
               Cow position:chr17:11280836-11281281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:300
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):30, 140

               
               
               Conread position:220-645
               
               
               Cow position:chr17:6424006-6423578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:288
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):181, 86

               
               
               Conread position:221-404
               
               
               Cow position:chr17:26183598-26183406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):76, 129

               
               
               Conread position:221-627
               
               
               Cow position:chr17:20032657-20033080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:292
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):95, 141

               
               
               Conread position:221-632
               
               
               Cow position:chr17:34596179-34595770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:269
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):184, 66

               
               
               Conread position:222-631
               
               
               Cow position:chr17:22775620-22775215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:278
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):87, 49

               
               
               Conread position:222-632
               
               
               Cow position:chr17:924116-923709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:287
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):30, 91

               
               
               Conread position:223-624
               
               
               Cow position:chr17:25917134-25916731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:278
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):90, 9

               
               
               Conread position:223-632
               
               
               Cow position:chr17:25128105-25128518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:270
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):98, 189

               
               
               Conread position:224-405
               
               
               Cow position:chr17:11055918-11056099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):12, 122

               
               
               Conread position:224-621
               
               
               Cow position:chr17:16446179-16446590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:291
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):85, 8

               
               
               Conread position:227-538
               
               
               Cow position:chr17:36275582-36275263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):11, 40

               
               
               Conread position:227-613
               
               
               Cow position:chr17:5143927-5144317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:259
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):154, 72

               
               
               Conread position:227-630
               
               
               Cow position:chr17:12306155-12306563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:280
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):86, 125

               
               
               Conread position:228-406
               
               
               Cow position:chr17:11920918-11921105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):101, 123

               
               
               Conread position:228-555
               
               
               Cow position:chr17:21489386-21489716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):96, 15

               
               
               Conread position:228-632
               
               
               Cow position:chr17:908983-908577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:275
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):93, 213

               
               
               Conread position:228-632
               
               
               Cow position:chr17:11839968-11839529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:302
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):8, 121

               
               
               Conread position:228-632
               
               
               Cow position:chr17:13922726-13922306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 84

               
               
               Conread position:228-632
               
               
               Cow position:chr17:18860500-18860888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 22

               
               
               Conread position:228-632
               
               
               Cow position:chr17:20889609-20889205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:259
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):9, 123

               
               
               Conread position:228-632
               
               
               Cow position:chr17:41289800-41290187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:282
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):188, 86

               
               
               Conread position:228-645
               
               
               Cow position:chr17:1035349-1035783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 132

               
               
               Conread position:228-645
               
               
               Cow position:chr17:21003587-21004013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:274
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):94, 123

               
               
               Conread position:229-456
               
               
               Cow position:chr17:22189674-22189443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):80, 123

               
               
               Conread position:230-643
               
               
               Cow position:chr17:36330725-36331149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:281
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):44, 85

               
               
               Conread position:231-632
               
               
               Cow position:chr17:14049969-14050363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:267
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):95, 38

               
               
               Conread position:232-389
               
               
               Cow position:chr17:36943603-36943446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):82, 110

               
               
               Conread position:232-404
               
               
               Cow position:chr17:18883528-18883697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):111, 59

               
               
               Conread position:232-405
               
               
               Cow position:chr17:1081448-1081265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):87, 128

               
               
               Conread position:232-405
               
               
               Cow position:chr17:20929484-20929302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):93, 118

               
               
               Conread position:232-405
               
               
               Cow position:chr17:38536399-38536575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):97, 54

               
               
               Conread position:232-417
               
               
               Cow position:chr17:9900143-9899954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):70, 113

               
               
               Conread position:232-420
               
               
               Cow position:chr17:14024388-14024587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):83, 128

               
               
               Conread position:232-427
               
               
               Cow position:chr17:28795740-28795942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):87, 127

               
               
               Conread position:232-449
               
               
               Cow position:chr17:25473041-25473266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):88, 217

               
               
               Conread position:232-518
               
               
               Cow position:chr17:25126584-25126297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):91, 109

               
               
               Conread position:232-571
               
               
               Cow position:chr17:11831878-11832227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:243
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):89, 113

               
               
               Conread position:232-611
               
               
               Cow position:chr17:17410540-17410145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:277
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):61, 123

               
               
               Conread position:232-615
               
               
               Cow position:chr17:30713586-30713194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:262
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):83, 236

               
               
               Conread position:232-622
               
               
               Cow position:chr17:13243814-13244190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:267
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):62, 23

               
               
               Conread position:232-625
               
               
               Cow position:chr17:1562551-1562936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:274
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):76, 181

               
               
               Conread position:232-628
               
               
               Cow position:chr17:20092889-20093292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:264
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):92, 110

               
               
               Conread position:232-629
               
               
               Cow position:chr17:17682674-17683064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:265
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):79, 113

               
               
               Conread position:232-630
               
               
               Cow position:chr17:15664916-15664502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 114

               
               
               Conread position:232-630
               
               
               Cow position:chr17:23246426-23246043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:269
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):190, 25

               
               
               Conread position:232-630
               
               
               Cow position:chr17:25612327-25611926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:264
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):89, 82

               
               
               Conread position:232-631
               
               
               Cow position:chr17:11215653-11216051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:276
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):63, 145

               
               
               Conread position:232-631
               
               
               Cow position:chr17:20848768-20848362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 121

               
               
               Conread position:232-631
               
               
               Cow position:chr17:21292798-21293213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:291
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):73, 32

               
               
               Conread position:232-631
               
               
               Cow position:chr17:24883330-24883736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:275
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):80, 182

               
               
               Conread position:232-632
               
               
               Cow position:chr17:11381485-11381889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:282
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):93, 128

               
               
               Conread position:232-632
               
               
               Cow position:chr17:20157848-20157446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:269
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):74, 116

               
               
               Conread position:232-632
               
               
               Cow position:chr17:22032448-22032863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:283
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):63, 191

               
               
               Conread position:232-632
               
               
               Cow position:chr17:29292150-29292536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:272
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):182, 89

               
               
               Conread position:232-632
               
               
               Cow position:chr17:33275519-33275915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:272
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):169, 67

               
               
               Conread position:232-632
               
               
               Cow position:chr17:37163305-37163696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:270
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):266, 75

               
               
               Conread position:232-633
               
               
               Cow position:chr17:20022274-20022687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:264
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:232-633
               
               
               Cow position:chr17:21434488-21434899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:281
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):94, 129

               
               
               Conread position:233-626
               
               
               Cow position:chr17:44146734-44147139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:270
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):37, 57

               
               
               Conread position:233-632
               
               
               Cow position:chr17:1634255-1634651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:264
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):88, 9

               
               
               Conread position:233-632
               
               
               Cow position:chr17:21972888-21973302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:274
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):66, 118

               
               
               Conread position:234-629
               
               
               Cow position:chr17:21414592-21415005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:280
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):64, 29

               
               
               Conread position:234-629
               
               
               Cow position:chr17:21437075-21437488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:277
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):64, 29

               
               
               Conread position:234-632
               
               
               Cow position:chr17:26231203-26230770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 133

               
               
               Conread position:235-456
               
               
               Cow position:chr17:5288401-5288173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):64, 80

               
               
               Conread position:235-539
               
               
               Cow position:chr17:1466179-1466505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:225
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):91, 17

               
               
               Conread position:235-632
               
               
               Cow position:chr17:21114718-21115117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:264
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):86, 249

               
               
               Conread position:236-532
               
               
               Cow position:chr17:26448779-26448473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):71, 112

               
               
               Conread position:236-581
               
               
               Cow position:chr17:31856908-31856545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):81, 104

               
               
               Conread position:236-622
               
               
               Cow position:chr17:28468360-28467977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:267
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):72, 114

               
               
               Conread position:236-624
               
               
               Cow position:chr17:12929292-12929704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:286
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):74, 35

               
               
               Conread position:236-629
               
               
               Cow position:chr17:25901444-25901029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:274
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):73, 185

               
               
               Conread position:236-630
               
               
               Cow position:chr17:5768130-5767747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:260
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):90, 29

               
               
               Conread position:236-631
               
               
               Cow position:chr17:29714978-29715354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:262
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):89, 30

               
               
               Conread position:236-632
               
               
               Cow position:chr17:11101582-11101963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:277
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):107, 70

               
               
               Conread position:236-632
               
               
               Cow position:chr17:11296875-11296466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:283
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):107, 62

               
               
               Conread position:236-632
               
               
               Cow position:chr17:15684739-15684336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:284
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):85, 30

               
               
               Conread position:236-632
               
               
               Cow position:chr17:24786789-24787190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:273
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):72, 185

               
               
               Conread position:236-632
               
               
               Cow position:chr17:27429792-27429409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:268
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):251, 51

               
               
               Conread position:236-632
               
               
               Cow position:chr17:40741890-40741478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:280
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):103, 63

               
               
               Conread position:236-645
               
               
               Cow position:chr17:20992802-20993221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 116

               
               
               Conread position:237-539
               
               
               Cow position:chr17:29026310-29025992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):81, 122

               
               
               Conread position:237-632
               
               
               Cow position:chr17:14033406-14033813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 120

               
               
               Conread position:238-414
               
               
               Cow position:chr17:18775955-18776133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):75, 107

               
               
               Conread position:238-420
               
               
               Cow position:chr17:10414727-10414544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):74, 104

               
               
               Conread position:242-615
               
               
               Cow position:chr17:31037147-31037532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:263
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):63, 13

               
               
               Conread position:242-628
               
               
               Cow position:chr17:5000371-5000741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:259
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):108, 67

               
               
               Conread position:242-628
               
               
               Cow position:chr17:20216378-20216006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:249
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):167, 51

               
               
               Conread position:242-632
               
               
               Cow position:chr17:22564408-22564014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:272
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):56, 37

               
               
               Conread position:242-632
               
               
               Cow position:chr17:33053084-33052694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:275
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):77, 29

               
               
               Conread position:242-632
               
               
               Cow position:chr17:43717110-43717482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:278
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):78, 21

               
               
               Conread position:242-646
               
               
               Cow position:chr17:32989703-32989309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:270
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):79, 19

               
               
               Conread position:242-646
               
               
               Cow position:chr17:32993397-32993797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:273
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):79, 19

               
               
               Conread position:243-635
               
               
               Cow position:chr17:5514986-5514584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:276
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):110, 63

               
               
               Conread position:243-645
               
               
               Cow position:chr17:30529318-30529718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 97

               
               
               Conread position:244-632
               
               
               Cow position:chr17:19891830-19891446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:265
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):163, 15

               
               
               Conread position:245-625
               
               
               Cow position:chr17:14025680-14026078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 114

               
               
               Conread position:246-450
               
               
               Cow position:chr17:24862681-24862470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):75, 68

               
               
               Conread position:246-610
               
               
               Cow position:chr17:6329338-6328961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 68

               
               
               Conread position:246-624
               
               
               Cow position:chr17:18419911-18419511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:264
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):70, 114

               
               
               Conread position:246-627
               
               
               Cow position:chr17:7437397-7437003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:258
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):34, 114

               
               
               Conread position:246-631
               
               
               Cow position:chr17:24773902-24773515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:254
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):59, 102

               
               
               Conread position:246-632
               
               
               Cow position:chr17:1063394-1063020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:256
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):75, 23

               
               
               Conread position:246-632
               
               
               Cow position:chr17:5422852-5423241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:257
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):168, 80

               
               
               Conread position:246-632
               
               
               Cow position:chr17:24580088-24580469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:271
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):160, 37

               
               
               Conread position:246-632
               
               
               Cow position:chr17:29080763-29080392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:274
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):71, 20

               
               
               Conread position:246-632
               
               
               Cow position:chr17:39771628-39771227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:270
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):73, 115

               
               
               Conread position:246-645
               
               
               Cow position:chr17:11156282-11156675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:265
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):36, 9

               
               
               Conread position:248-559
               
               
               Cow position:chr17:36864847-36864535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):158, 70

               
               
               Conread position:248-632
               
               
               Cow position:chr17:11362400-11362014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:275
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):71, 110

               
               
               Conread position:252-632
               
               
               Cow position:chr17:2810853-2810452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:278
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):69, 5

               
               
               Conread position:252-632
               
               
               Cow position:chr17:6566704-6566302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:274
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):57, 355

               
               
               Conread position:253-632
               
               
               Cow position:chr17:13143502-13143859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:266
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):81, 40

               
               
               Conread position:255-631
               
               
               Cow position:chr17:18473380-18473008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:252
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):50, 87

               
               
               Conread position:260-632
               
               
               Cow position:chr17:4611850-4612246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:273
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):39, 5

               
               
               Conread position:260-632
               
               
               Cow position:chr17:34078896-34079267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:276
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):47, 91

               
               
               Conread position:264-632
               
               
               Cow position:chr17:9697472-9697870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:264
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):46, 190

               
               
               Conread position:268-630
               
               
               Cow position:chr17:32273491-32273851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):44, 27

               
               
               Conread position:268-632
               
               
               Cow position:chr17:12219742-12220107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:242
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):164, 73

               
               
               Conread position:271-632
               
               
               Cow position:chr17:14248812-14249192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:265
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):22, 139

               
               
               Conread position:271-632
               
               
               Cow position:chr17:25097654-25097293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 75

               
               
               Conread position:273-553
               
               
               Cow position:chr17:2275664-2275384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):38, 76

               
               
               Conread position:274-632
               
               
               Cow position:chr17:1492948-1493324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:255
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):52, 85

               
               
               Conread position:274-632
               
               
               Cow position:chr17:18495321-18495679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:242
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):41, 65

               
               
               Conread position:277-630
               
               
               Cow position:chr17:18108891-18109253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):32, 66

               
               
               Conread position:294-631
               
               
               Cow position:chr17:8544480-8544138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:246
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):21, 43

               
               
               Conread position:298-632
               
               
               Cow position:chr17:9117813-9117474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 110

               
               
               Conread position:298-632
               
               
               Cow position:chr17:21755267-21755610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:231
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):22, 44

               
               
               Conread position:298-632
               
               
               Cow position:chr17:40288832-40289173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):36, 44

               
               
               Conread position:299-563
               
               
               Cow position:chr17:34751239-34751505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):35, 43

               
               
               Conread position:299-609
               
               
               Cow position:chr17:20874563-20874249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):13, 48

               
               
               Conread position:299-631
               
               
               Cow position:chr17:7698213-7697885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:231
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):104, 42

               
               
               Conread position:299-632
               
               
               Cow position:chr17:24554161-24553835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):115, 18

               
               
               Conread position:303-632
               
               
               Cow position:chr17:30718256-30718588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:225
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):31, 17

               
               
               Conread position:303-633
               
               
               Cow position:chr17:9746674-9746348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):195, 38

               
               
               Conread position:309-630
               
               
               Cow position:chr17:7760317-7760630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:220
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):284, 32

               
               
               Conread position:310-632
               
               
               Cow position:chr17:14848390-14848692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):24, 34

               
               
               Conread position:318-645
               
               
               Cow position:chr17:18592589-18592258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):90, 17

               
               
               Conread position:319-632
               
               
               Cow position:chr17:1410092-1410412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):86, 22

               
               
               Conread position:319-632
               
               
               Cow position:chr17:9911904-9911594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:222
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):95, 80

               
               
               Conread position:319-632
               
               
               Cow position:chr17:12591321-12590994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:225
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):64, 157

               
               
               Conread position:319-632
               
               
               Cow position:chr17:22806396-22806710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):146, 88

               
               
               Conread position:319-632
               
               
               Cow position:chr17:24822008-24821697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):89, 78

               
               
               Conread position:319-633
               
               
               Cow position:chr17:29157563-29157248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:216
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):76, 130

               
               
               Conread position:320-628
               
               
               Cow position:chr17:9565446-9565144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):213, 21

               
               
               Conread position:320-632
               
               
               Cow position:chr17:15299735-15300039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):12, 24

               
               
               Conread position:320-632
               
               
               Cow position:chr17:20990044-20990363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):75, 139

               
               
               Conread position:320-632
               
               
               Cow position:chr17:41030083-41029784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:215
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):169, 21

               
               
               Conread position:321-632
               
               
               Cow position:chr17:21495515-21495205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:219
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):83, 20

               
               
               Conread position:321-635
               
               
               Cow position:chr17:5006343-5006660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:212
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):35, 20

               
               
               Conread position:323-558
               
               
               Cow position:chr17:27202904-27203139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):84, 20

               
               
               Conread position:323-632
               
               
               Cow position:chr17:21335550-21335867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:227
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):82, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr17:21680921-21680599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:225
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):72, 26

               
               
               Conread position:323-632
               
               
               Cow position:chr17:38833185-38832873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:211
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):77, 18

               
               
               Conread position:323-636
               
               
               Cow position:chr17:8079454-8079141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):92, 18

               
               
               Conread position:323-645
               
               
               Cow position:chr17:37479860-37480175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):171, 28

               
               
               Conread position:323-646
               
               
               Cow position:chr17:27048297-27047977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):85, 18

               
               
               Conread position:324-632
               
               
               Cow position:chr17:37481931-37482248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):82, 17

               
               
               Conread position:325-624
               
               
               Cow position:chr17:25796197-25796501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):83, 28

               
               
               Conread position:325-632
               
               
               Cow position:chr17:38200623-38200934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):77, 28

               
               
               Conread position:328-632
               
               
               Cow position:chr17:41891924-41892237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):87, 13

               
               
               Conread position:328-645
               
               
               Cow position:chr17:3503719-3503404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):81, 122

               
               
               Conread position:333-628
               
               
               Cow position:chr17:979035-979318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):164, 8

               
               
               Conread position:337-632
               
               
               Cow position:chr17:3782172-3781876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:203
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):178, 0

               
               
               Conread position:339-596
               
               
               Cow position:chr17:14060646-14060909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):11, 111

               
               
               Conread position:351-589
               
               
               Cow position:chr17:552855-553083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:170
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):63, 56

               
               
               Conread position:351-637
               
               
               Cow position:chr17:11171907-11171622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):57, 16

               
               
               Conread position:352-631
               
               
               Cow position:chr17:21917759-21918042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):62, 55

               
               
               Conread position:352-632
               
               
               Cow position:chr17:38647175-38646895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):51, 91

               
               
               Conread position:353-632
               
               
               Cow position:chr17:21628591-21628313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):55, 105

               
               
               Conread position:356-632
               
               
               Cow position:chr17:4225390-4225660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:180
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):58, 28

               
               
               Conread position:356-632
               
               
               Cow position:chr17:28540138-28539868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):29, 40

               
               
               Conread position:361-632
               
               
               Cow position:chr17:25541712-25541982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):45, 91

               
               
               Conread position:365-645
               
               
               Cow position:chr17:34316616-34316891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):57, 30

               
               
               Conread position:367-621
               
               
               Cow position:chr17:14762023-14762277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):40, 90

               
               
               Conread position:370-605
               
               
               Cow position:chr17:33271587-33271829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):49, 89

               
               
               Conread position:380-631
               
               
               Cow position:chr17:6624339-6624090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):36, 15

               
               
               Conread position:380-632
               
               
               Cow position:chr17:15333624-15333880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):28, 72

               
               
               Conread position:384-632
               
               
               Cow position:chr17:8690363-8690609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):87, 74

               
               
               Conread position:384-632
               
               
               Cow position:chr17:12059011-12059260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):25, 77

               
               
               Conread position:387-632
               
               
               Cow position:chr17:1526275-1526527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):27, 11

               
               
               Conread position:394-567
               
               
               Cow position:chr17:17266819-17266998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):11, 58

               
               
               Conread position:395-615
               
               
               Cow position:chr17:267514-267736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):12, 70

               
               
               Conread position:397-633
               
               
               Cow position:chr17:44232645-44232889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):19, 53

               
               
               Conread position:398-633
               
               
               Cow position:chr17:26881267-26881507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):9, 26

               
               
               Conread position:399-630
               
               
               Cow position:chr17:27306225-27305991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):23, 73

               
               
               Conread position:399-632
               
               
               Cow position:chr17:24550242-24550000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):26, 58

               
               
               Conread position:409-632
               
               
               Cow position:chr17:33926070-33926294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):27, 22

               
               
               Conread position:410-632
               
               
               Cow position:chr17:18884276-18884518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:411-632
               
               
               Cow position:chr17:242689-242467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:162
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):87, 35

               
               
               Conread position:411-646
               
               
               Cow position:chr17:5246945-5246712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):60, 37

               
               
               Conread position:412-632
               
               
               Cow position:chr17:21312759-21312974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):85, 36

               
               
               Conread position:412-632
               
               
               Cow position:chr17:34207765-34207989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):44, 34

               
               
               Conread position:420-632
               
               
               Cow position:chr17:32651667-32651447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):25, 9

               
               
               Conread position:429-632
               
               
               Cow position:chr17:11386549-11386345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):121, 11

               
               
               Conread position:441-633
               
               
               Cow position:chr17:5041657-5041846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:443-632
               
               
               Cow position:chr17:15067605-15067795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):59, 101

               
               
               Conread position:449-631
               
               
               Cow position:chr17:20126630-20126445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):7, 88

               
               
               Conread position:458-632
               
               
               Cow position:chr17:11056363-11056543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:458-632
               
               
               Cow position:chr17:42347219-42347390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):42, 21

               
               
               Conread position:459-631
               
               
               Cow position:chr17:3471427-3471253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):41, 143

               
               
               Conread position:459-632
               
               
               Cow position:chr17:1295562-1295740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:462-632
               
               
               Cow position:chr17:966735-966908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:463-632
               
               
               Cow position:chr17:30539250-30539416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):26, 93

               
               
               Conread position:469-632
               
               
               Cow position:chr17:32221166-32221331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):74, 38

               
               
               Conread position:470-632
               
               
               Cow position:chr17:26183218-26183053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):30, 99

               
               
               Conread position:470-632
               
               
               Cow position:chr17:35311422-35311252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:470-645
               
               
               Cow position:chr17:22781687-22781505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:471-614
               
               
               Cow position:chr17:20358864-20358724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):72, 27

               
               
               Conread position:471-645
               
               
               Cow position:chr17:21207139-21207317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):18, 59

               
               
               Conread position:478-632
               
               
               Cow position:chr17:9778235-9778082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):20, 113

               
               
               Conread position:481-633
               
               
               Cow position:chr17:21412261-21412417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:118
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):17, 61

               
               
               Conread position:482-632
               
               
               Cow position:chr17:21710489-21710336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):18, 68

               
               
               Conread position:485-632
               
               
               Cow position:chr17:36268372-36268227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):54, 81

               
               
               Conread position:492-627
               
               
               Cow position:chr17:43527949-43527813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:493-632
               
               
               Cow position:chr17:1061089-1061231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):90, 123

               
               
               Conread position:493-632
               
               
               Cow position:chr17:1358830-1358968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:493-632
               
               
               Cow position:chr17:3258466-3258327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:110
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):43, 83

               
               
               Conread position:494-632
               
               
               Cow position:chr17:26764987-26764844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:495-621
               
               
               Cow position:chr17:40792191-40792065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:495-629
               
               
               Cow position:chr17:10510690-10510828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:104
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr17:3182616-3182754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):42, 54

               
               
               Conread position:495-632
               
               
               Cow position:chr17:3442700-3442837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr17:3498695-3498833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):47, 67

               
               
               Conread position:495-632
               
               
               Cow position:chr17:4436264-4436400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr17:4601576-4601717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:106
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr17:4606927-4606798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:108
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr17:4824464-4824325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):51, 39

               
               
               Conread position:495-632
               
               
               Cow position:chr17:12216105-12216246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr17:20835565-20835424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr17:20839592-20839730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr17:21017765-21017625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):91, 37

               
               
               Conread position:495-632
               
               
               Cow position:chr17:25168287-25168141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr17:27667220-27667363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:109
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr17:27679268-27679413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr17:31231144-31231283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):90, 11

               
               
               Conread position:495-632
               
               
               Cow position:chr17:32554056-32554195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):91, 27

               
               
               Conread position:495-632
               
               
               Cow position:chr17:32950242-32950103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr17:36817910-36817773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:103
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):19, 94

               
               
               Conread position:495-632
               
               
               Cow position:chr17:40331735-40331596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:495-633
               
               
               Cow position:chr17:24761259-24761396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:496-629
               
               
               Cow position:chr17:23337049-23337179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:496-632
               
               
               Cow position:chr17:25590267-25590405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:103
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:496-643
               
               
               Cow position:chr17:20870133-20870279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):66, 45

               
               
               Conread position:499-631
               
               
               Cow position:chr17:40312691-40312553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:499-632
               
               
               Cow position:chr17:16117458-16117597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:499-645
               
               
               Cow position:chr17:23680945-23680802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:108
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:501-632
               
               
               Cow position:chr17:3306829-3306698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:102
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:502-632
               
               
               Cow position:chr17:21697698-21697563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:503-621
               
               
               Cow position:chr17:20928875-20928752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:503-631
               
               
               Cow position:chr17:12054682-12054551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:503-632
               
               
               Cow position:chr17:20269562-20269433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):15, 5

               
               
               Conread position:505-611
               
               
               Cow position:chr17:21323251-21323141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:90
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:505-632
               
               
               Cow position:chr17:27162613-27162483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:509-632
               
               
               Cow position:chr17:26224476-26224348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:509-632
               
               
               Cow position:chr17:30999727-30999606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:513-632
               
               
               Cow position:chr17:20337741-20337620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:96
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:514-632
               
               
               Cow position:chr17:8644989-8644868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):69, 106

               
               
               Conread position:514-646
               
               
               Cow position:chr17:12325798-12325932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:106
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):23, 31

               
               
               Conread position:517-632
               
               
               Cow position:chr17:7810788-7810908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:518-636
               
               
               Cow position:chr17:39485744-39485626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:521-632
               
               
               Cow position:chr17:7423497-7423610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:90
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:553-632
               
               
               Cow position:chr17:11912790-11912869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:80
               
               
               Alignm identity:72
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:193-602
               
               
               Cow position:chr18:7414831-7415242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:272
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):114, 13

               
               
               Conread position:199-624
               
               
               Cow position:chr18:29356434-29356864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:277
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):206, 117

               
               
               Conread position:201-631
               
               
               Cow position:chr18:26354844-26355274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:299
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):166, 127

               
               
               Conread position:205-325
               
               
               Cow position:chr18:32960273-32960153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:95
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):31, 108

               
               
               Conread position:208-418
               
               
               Cow position:chr18:52251664-52251883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):28, 20

               
               
               Conread position:208-446
               
               
               Cow position:chr18:23630426-23630662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):186, 24

               
               
               Conread position:208-459
               
               
               Cow position:chr18:10051933-10051677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):113, 20

               
               
               Conread position:209-405
               
               
               Cow position:chr18:39860586-39860784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):38, 111

               
               
               Conread position:210-404
               
               
               Cow position:chr18:56463539-56463742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):27, 150

               
               
               Conread position:210-420
               
               
               Cow position:chr18:51395706-51395913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):26, 18

               
               
               Conread position:210-438
               
               
               Cow position:chr18:16659241-16659482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):107, 22

               
               
               Conread position:210-632
               
               
               Cow position:chr18:49100195-49100610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:288
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):16, 99

               
               
               Conread position:211-595
               
               
               Cow position:chr18:23615688-23616086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:263
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):92, 136

               
               
               Conread position:212-403
               
               
               Cow position:chr18:3164327-3164525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):107, 53

               
               
               Conread position:212-632
               
               
               Cow position:chr18:3180596-3180178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 143

               
               
               Conread position:213-541
               
               
               Cow position:chr18:728206-727886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:217
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):82, 72

               
               
               Conread position:213-632
               
               
               Cow position:chr18:55553162-55552723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:284
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):18, 225

               
               
               Conread position:213-632
               
               
               Cow position:chr18:56181275-56181697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:293
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):25, 15

               
               
               Conread position:214-537
               
               
               Cow position:chr18:4264212-4264538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):78, 189

               
               
               Conread position:214-554
               
               
               Cow position:chr18:5632444-5632101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:239
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):99, 14

               
               
               Conread position:214-631
               
               
               Cow position:chr18:27079051-27078608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:306
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):113, 148

               
               
               Conread position:215-405
               
               
               Cow position:chr18:2144752-2144558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):106, 15

               
               
               Conread position:215-414
               
               
               Cow position:chr18:39460397-39460196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):106, 16

               
               
               Conread position:215-420
               
               
               Cow position:chr18:35795037-35795252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):109, 145

               
               
               Conread position:215-452
               
               
               Cow position:chr18:1735415-1735638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):21, 13

               
               
               Conread position:215-607
               
               
               Cow position:chr18:5189508-5189909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 70

               
               
               Conread position:215-620
               
               
               Cow position:chr18:23714708-23715119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:269
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):84, 16

               
               
               Conread position:215-626
               
               
               Cow position:chr18:4495710-4496124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 16

               
               
               Conread position:215-631
               
               
               Cow position:chr18:51443272-51443672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:275
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):274, 25

               
               
               Conread position:215-632
               
               
               Cow position:chr18:17649551-17649978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:290
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):16, 147

               
               
               Conread position:215-632
               
               
               Cow position:chr18:19849591-19849993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):281, 16

               
               
               Conread position:215-632
               
               
               Cow position:chr18:23446881-23447324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 26

               
               
               Conread position:215-632
               
               
               Cow position:chr18:29648962-29648539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:270
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):99, 15

               
               
               Conread position:215-632
               
               
               Cow position:chr18:55701477-55701895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:279
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):24, 149

               
               
               Conread position:215-645
               
               
               Cow position:chr18:20173954-20174385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:296
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):115, 67

               
               
               Conread position:216-375
               
               
               Cow position:chr18:37690333-37690167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):103, 128

               
               
               Conread position:216-396
               
               
               Cow position:chr18:50632264-50632446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):79, 16

               
               
               Conread position:216-401
               
               
               Cow position:chr18:21528831-21528638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):109, 16

               
               
               Conread position:216-405
               
               
               Cow position:chr18:18844192-18844000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):101, 15

               
               
               Conread position:216-405
               
               
               Cow position:chr18:19831757-19831569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:216-406
               
               
               Cow position:chr18:46879978-46880177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):99, 144

               
               
               Conread position:216-419
               
               
               Cow position:chr18:2108430-2108220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):74, 132

               
               
               Conread position:216-419
               
               
               Cow position:chr18:29091911-29091713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):21, 104

               
               
               Conread position:216-430
               
               
               Cow position:chr18:31556975-31557197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):105, 134

               
               
               Conread position:216-438
               
               
               Cow position:chr18:135478-135704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):92, 136

               
               
               Conread position:216-447
               
               
               Cow position:chr18:237932-238173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):103, 16

               
               
               Conread position:216-447
               
               
               Cow position:chr18:32253324-32253568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:177
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):51, 144

               
               
               Conread position:216-539
               
               
               Cow position:chr18:6005317-6005644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:221
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):23, 55

               
               
               Conread position:216-541
               
               
               Cow position:chr18:34813834-34813498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):41, 202

               
               
               Conread position:216-624
               
               
               Cow position:chr18:14586296-14586711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 84

               
               
               Conread position:216-625
               
               
               Cow position:chr18:7487419-7487021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:280
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):15, 113

               
               
               Conread position:216-629
               
               
               Cow position:chr18:48713724-48713314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:267
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):182, 100

               
               
               Conread position:216-629
               
               
               Cow position:chr18:51691282-51691707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:289
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):45, 27

               
               
               Conread position:216-631
               
               
               Cow position:chr18:22120703-22121123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 50

               
               
               Conread position:216-631
               
               
               Cow position:chr18:29957997-29958388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:268
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):18, 49

               
               
               Conread position:216-632
               
               
               Cow position:chr18:4668325-4668734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:275
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):187, 20

               
               
               Conread position:216-632
               
               
               Cow position:chr18:9089871-9089460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:279
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):91, 14

               
               
               Conread position:216-632
               
               
               Cow position:chr18:11233602-11233189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:301
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):67, 16

               
               
               Conread position:216-632
               
               
               Cow position:chr18:20126473-20126059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:277
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):198, 12

               
               
               Conread position:216-632
               
               
               Cow position:chr18:51405736-51406146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 16

               
               
               Conread position:216-632
               
               
               Cow position:chr18:51655870-51656295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:272
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):94, 15

               
               
               Conread position:216-638
               
               
               Cow position:chr18:26001183-26001611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:290
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):192, 112

               
               
               Conread position:216-643
               
               
               Cow position:chr18:55693003-55692565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:298
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):15, 80

               
               
               Conread position:216-645
               
               
               Cow position:chr18:55000554-55000997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:286
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):23, 47

               
               
               Conread position:217-324
               
               
               Cow position:chr18:20391387-20391280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:87
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:217-388
               
               
               Cow position:chr18:36098539-36098370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:217-389
               
               
               Cow position:chr18:44514269-44514089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):102, 14

               
               
               Conread position:217-413
               
               
               Cow position:chr18:23380309-23380108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):17, 63

               
               
               Conread position:217-418
               
               
               Cow position:chr18:33757195-33756989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):96, 123

               
               
               Conread position:217-427
               
               
               Cow position:chr18:21751560-21751341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):102, 11

               
               
               Conread position:217-496
               
               
               Cow position:chr18:1931280-1931559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):82, 14

               
               
               Conread position:217-539
               
               
               Cow position:chr18:50095227-50095543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):11, 90

               
               
               Conread position:217-608
               
               
               Cow position:chr18:381107-380726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:273
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):22, 104

               
               
               Conread position:217-624
               
               
               Cow position:chr18:21252169-21251752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:269
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):101, 49

               
               
               Conread position:217-626
               
               
               Cow position:chr18:42479400-42479828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 15

               
               
               Conread position:217-627
               
               
               Cow position:chr18:44262803-44262385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 11

               
               
               Conread position:217-630
               
               
               Cow position:chr18:11691225-11691652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:281
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):107, 167

               
               
               Conread position:217-632
               
               
               Cow position:chr18:10322979-10322558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:288
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):21, 91

               
               
               Conread position:217-632
               
               
               Cow position:chr18:22789912-22790317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:283
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):96, 11

               
               
               Conread position:217-632
               
               
               Cow position:chr18:29372052-29371626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 132

               
               
               Conread position:217-632
               
               
               Cow position:chr18:31672337-31672749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 125

               
               
               Conread position:217-633
               
               
               Cow position:chr18:12023458-12023876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:278
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):104, 135

               
               
               Conread position:217-633
               
               
               Cow position:chr18:43283575-43284001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 70

               
               
               Conread position:218-390
               
               
               Cow position:chr18:14871424-14871602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):101, 139

               
               
               Conread position:218-420
               
               
               Cow position:chr18:50359502-50359304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):196, 13

               
               
               Conread position:218-483
               
               
               Cow position:chr18:20317884-20318135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):18, 11

               
               
               Conread position:218-533
               
               
               Cow position:chr18:10214011-10214339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:233
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):103, 128

               
               
               Conread position:218-549
               
               
               Cow position:chr18:25601145-25601477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):85, 138

               
               
               Conread position:218-574
               
               
               Cow position:chr18:43951011-43950639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:252
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):19, 141

               
               
               Conread position:218-632
               
               
               Cow position:chr18:7965413-7964989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 267

               
               
               Conread position:218-632
               
               
               Cow position:chr18:16227742-16227319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:284
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):19, 147

               
               
               Conread position:218-632
               
               
               Cow position:chr18:26939154-26938741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:267
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):19, 50

               
               
               Conread position:218-633
               
               
               Cow position:chr18:46452704-46453121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:272
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):95, 14

               
               
               Conread position:219-326
               
               
               Cow position:chr18:38211338-38211231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:89
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:219-342
               
               
               Cow position:chr18:30385334-30385457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):100, 10

               
               
               Conread position:219-418
               
               
               Cow position:chr18:41703013-41702811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):84, 178

               
               
               Conread position:219-452
               
               
               Cow position:chr18:21782864-21782626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):98, 40

               
               
               Conread position:219-620
               
               
               Cow position:chr18:28793901-28794296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:261
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):18, 9

               
               
               Conread position:219-624
               
               
               Cow position:chr18:32873774-32873349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:289
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):34, 11

               
               
               Conread position:219-632
               
               
               Cow position:chr18:11867517-11867105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 126

               
               
               Conread position:219-633
               
               
               Cow position:chr18:17390811-17391217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:287
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):81, 170

               
               
               Conread position:219-648
               
               
               Cow position:chr18:1954400-1954858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:303
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):14, 204

               
               
               Conread position:220-333
               
               
               Cow position:chr18:36526235-36526123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:90
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:220-420
               
               
               Cow position:chr18:34490461-34490252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):9, 138

               
               
               Conread position:220-420
               
               
               Cow position:chr18:42427793-42427590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):89, 16

               
               
               Conread position:220-451
               
               
               Cow position:chr18:37303333-37303091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):7, 140

               
               
               Conread position:220-595
               
               
               Cow position:chr18:7109312-7108920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 140

               
               
               Conread position:220-632
               
               
               Cow position:chr18:50382428-50382015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 195

               
               
               Conread position:220-633
               
               
               Cow position:chr18:52682560-52682976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:272
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):117, 11

               
               
               Conread position:221-451
               
               
               Cow position:chr18:49015291-49015066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):106, 16

               
               
               Conread position:221-507
               
               
               Cow position:chr18:12584665-12584961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):18, 66

               
               
               Conread position:221-579
               
               
               Cow position:chr18:46276120-46276498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:243
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):18, 140

               
               
               Conread position:222-610
               
               
               Cow position:chr18:30341006-30341397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:267
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):84, 210

               
               
               Conread position:222-633
               
               
               Cow position:chr18:52459676-52460101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:292
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):5, 135

               
               
               Conread position:224-632
               
               
               Cow position:chr18:39662956-39662543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 131

               
               
               Conread position:225-420
               
               
               Cow position:chr18:47868769-47868580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:226-629
               
               
               Cow position:chr18:3166336-3166726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:275
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):10, 74

               
               
               Conread position:227-419
               
               
               Cow position:chr18:19765357-19765162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):94, 87

               
               
               Conread position:227-632
               
               
               Cow position:chr18:7650146-7649752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:258
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):262, 51

               
               
               Conread position:227-632
               
               
               Cow position:chr18:47512166-47511753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:271
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):19, 38

               
               
               Conread position:228-405
               
               
               Cow position:chr18:17195175-17195358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):8, 128

               
               
               Conread position:228-418
               
               
               Cow position:chr18:8208253-8208453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):71, 129

               
               
               Conread position:228-420
               
               
               Cow position:chr18:50567074-50566871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):100, 135

               
               
               Conread position:228-421
               
               
               Cow position:chr18:28189564-28189754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):150, 74

               
               
               Conread position:228-449
               
               
               Cow position:chr18:44909223-44908992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):8, 127

               
               
               Conread position:228-454
               
               
               Cow position:chr18:45558313-45558082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):78, 218

               
               
               Conread position:228-632
               
               
               Cow position:chr18:3115627-3115217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:279
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):8, 136

               
               
               Conread position:228-632
               
               
               Cow position:chr18:37023366-37023799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 134

               
               
               Conread position:228-632
               
               
               Cow position:chr18:45104259-45104689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:290
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):65, 120

               
               
               Conread position:228-632
               
               
               Cow position:chr18:49200806-49200398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:273
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):8, 133

               
               
               Conread position:228-645
               
               
               Cow position:chr18:52637356-52637783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:290
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):8, 135

               
               
               Conread position:230-404
               
               
               Cow position:chr18:32992548-32992371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):83, 124

               
               
               Conread position:230-632
               
               
               Cow position:chr18:33300052-33299655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:269
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):173, 9

               
               
               Conread position:231-632
               
               
               Cow position:chr18:51298628-51298239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:268
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):177, 68

               
               
               Conread position:232-404
               
               
               Cow position:chr18:52387052-52387232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):87, 67

               
               
               Conread position:232-405
               
               
               Cow position:chr18:50004540-50004719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:232-420
               
               
               Cow position:chr18:56155682-56155493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):118, 176

               
               
               Conread position:232-438
               
               
               Cow position:chr18:14172047-14172257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):81, 111

               
               
               Conread position:232-452
               
               
               Cow position:chr18:50959655-50959422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):87, 115

               
               
               Conread position:232-456
               
               
               Cow position:chr18:24719475-24719246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):15, 111

               
               
               Conread position:232-538
               
               
               Cow position:chr18:4555998-4556314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):70, 118

               
               
               Conread position:232-539
               
               
               Cow position:chr18:42292896-42293200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):182, 117

               
               
               Conread position:232-540
               
               
               Cow position:chr18:29474904-29474590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):61, 110

               
               
               Conread position:232-565
               
               
               Cow position:chr18:50974122-50974471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:248
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):77, 17

               
               
               Conread position:232-587
               
               
               Cow position:chr18:5072251-5072608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):190, 108

               
               
               Conread position:232-589
               
               
               Cow position:chr18:39811417-39811765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:255
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):24, 124

               
               
               Conread position:232-600
               
               
               Cow position:chr18:3212046-3211658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 127

               
               
               Conread position:232-614
               
               
               Cow position:chr18:16545296-16545690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:270
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):87, 129

               
               
               Conread position:232-629
               
               
               Cow position:chr18:247531-247923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:275
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):61, 113

               
               
               Conread position:232-629
               
               
               Cow position:chr18:1144026-1144434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 27

               
               
               Conread position:232-629
               
               
               Cow position:chr18:12242443-12242041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:255
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):94, 49

               
               
               Conread position:232-629
               
               
               Cow position:chr18:18592630-18592233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:274
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):226, 95

               
               
               Conread position:232-631
               
               
               Cow position:chr18:29796282-29796666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:280
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):174, 34

               
               
               Conread position:232-632
               
               
               Cow position:chr18:2591994-2592415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 123

               
               
               Conread position:232-632
               
               
               Cow position:chr18:7956315-7955900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 34

               
               
               Conread position:232-632
               
               
               Cow position:chr18:9974164-9974568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:269
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):89, 129

               
               
               Conread position:232-632
               
               
               Cow position:chr18:10905013-10904606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:265
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):89, 138

               
               
               Conread position:232-632
               
               
               Cow position:chr18:12059160-12058775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:277
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):81, 112

               
               
               Conread position:232-632
               
               
               Cow position:chr18:18918797-18919195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 112

               
               
               Conread position:232-632
               
               
               Cow position:chr18:19646323-19645933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:272
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):114, 53

               
               
               Conread position:232-632
               
               
               Cow position:chr18:20126960-20127345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:275
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):176, 31

               
               
               Conread position:232-632
               
               
               Cow position:chr18:20270845-20271262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:287
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):94, 127

               
               
               Conread position:232-632
               
               
               Cow position:chr18:21195181-21195580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:270
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):163, 23

               
               
               Conread position:232-632
               
               
               Cow position:chr18:22411464-22411859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:270
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):176, 65

               
               
               Conread position:232-632
               
               
               Cow position:chr18:32410849-32411233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:260
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):86, 103

               
               
               Conread position:232-632
               
               
               Cow position:chr18:45903730-45904134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 223

               
               
               Conread position:232-645
               
               
               Cow position:chr18:51178546-51179001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:303
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):7, 197

               
               
               Conread position:233-420
               
               
               Cow position:chr18:5647973-5647785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):79, 109

               
               
               Conread position:233-628
               
               
               Cow position:chr18:3027177-3027604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:275
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):66, 175

               
               
               Conread position:233-632
               
               
               Cow position:chr18:10576268-10575866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 85

               
               
               Conread position:233-632
               
               
               Cow position:chr18:55505568-55505158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:268
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):83, 38

               
               
               Conread position:234-539
               
               
               Cow position:chr18:51643205-51643515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 103

               
               
               Conread position:234-632
               
               
               Cow position:chr18:37002801-37002387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:272
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):86, 53

               
               
               Conread position:235-629
               
               
               Cow position:chr18:51757257-51756858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:282
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):79, 122

               
               
               Conread position:235-643
               
               
               Cow position:chr18:54572125-54572552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:286
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):80, 124

               
               
               Conread position:236-623
               
               
               Cow position:chr18:10977053-10977444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:258
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):84, 27

               
               
               Conread position:236-632
               
               
               Cow position:chr18:6310242-6309838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:262
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):85, 183

               
               
               Conread position:236-632
               
               
               Cow position:chr18:9366084-9365670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:271
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):89, 241

               
               
               Conread position:236-632
               
               
               Cow position:chr18:46048916-46048519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 114

               
               
               Conread position:236-632
               
               
               Cow position:chr18:55499232-55498820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 130

               
               
               Conread position:237-416
               
               
               Cow position:chr18:49161139-49161329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):58, 116

               
               
               Conread position:237-631
               
               
               Cow position:chr18:4757872-4758269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:288
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):9, 33

               
               
               Conread position:237-632
               
               
               Cow position:chr18:31586233-31586607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:266
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):95, 11

               
               
               Conread position:237-632
               
               
               Cow position:chr18:52695616-52695223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:261
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):87, 119

               
               
               Conread position:237-643
               
               
               Cow position:chr18:13360191-13359806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:288
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):263, 21

               
               
               Conread position:240-395
               
               
               Cow position:chr18:18569136-18568990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:240-632
               
               
               Cow position:chr18:11322741-11322350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:264
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):28, 37

               
               
               Conread position:242-452
               
               
               Cow position:chr18:47125256-47125464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):157, 64

               
               
               Conread position:242-539
               
               
               Cow position:chr18:42290178-42290472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):172, 107

               
               
               Conread position:242-544
               
               
               Cow position:chr18:9846263-9846550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):254, 57

               
               
               Conread position:242-560
               
               
               Cow position:chr18:30586080-30586390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):167, 64

               
               
               Conread position:242-622
               
               
               Cow position:chr18:29065236-29065611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:259
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):160, 77

               
               
               Conread position:242-632
               
               
               Cow position:chr18:16841914-16842308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:256
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):65, 50

               
               
               Conread position:243-405
               
               
               Cow position:chr18:26586457-26586627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):78, 106

               
               
               Conread position:243-412
               
               
               Cow position:chr18:24022770-24022599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):70, 101

               
               
               Conread position:243-457
               
               
               Cow position:chr18:40047349-40047566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):78, 71

               
               
               Conread position:243-632
               
               
               Cow position:chr18:5578450-5578060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:253
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):83, 91

               
               
               Conread position:243-632
               
               
               Cow position:chr18:7945795-7945393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:276
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):68, 23

               
               
               Conread position:243-632
               
               
               Cow position:chr18:32883452-32883059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:272
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):27, 101

               
               
               Conread position:245-580
               
               
               Cow position:chr18:5766561-5766225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):66, 148

               
               
               Conread position:246-387
               
               
               Cow position:chr18:3066487-3066349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:246-451
               
               
               Cow position:chr18:47565967-47565764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):175, 20

               
               
               Conread position:246-551
               
               
               Cow position:chr18:35874230-35873913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):35, 110

               
               
               Conread position:246-632
               
               
               Cow position:chr18:3158431-3158844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:279
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):59, 209

               
               
               Conread position:246-632
               
               
               Cow position:chr18:37381939-37382340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 103

               
               
               Conread position:246-632
               
               
               Cow position:chr18:42747750-42747353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 210

               
               
               Conread position:246-645
               
               
               Cow position:chr18:26999041-26998609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:298
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):75, 114

               
               
               Conread position:247-632
               
               
               Cow position:chr18:2270366-2270746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:272
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):65, 112

               
               
               Conread position:247-632
               
               
               Cow position:chr18:15613713-15614090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:266
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):76, 233

               
               
               Conread position:248-632
               
               
               Cow position:chr18:39001664-39002036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 95

               
               
               Conread position:249-496
               
               
               Cow position:chr18:24759510-24759760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):64, 95

               
               
               Conread position:252-628
               
               
               Cow position:chr18:24855716-24856083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):63, 73

               
               
               Conread position:255-613
               
               
               Cow position:chr18:2863854-2864222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:246
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):153, 86

               
               
               Conread position:255-632
               
               
               Cow position:chr18:33793820-33793466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:256
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):281, 63

               
               
               Conread position:258-631
               
               
               Cow position:chr18:51712578-51712950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:259
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):24, 51

               
               
               Conread position:258-632
               
               
               Cow position:chr18:28101770-28101384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:261
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):49, 113

               
               
               Conread position:262-632
               
               
               Cow position:chr18:28657778-28658156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:257
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):53, 211

               
               
               Conread position:266-558
               
               
               Cow position:chr18:2774004-2774299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):53, 81

               
               
               Conread position:270-621
               
               
               Cow position:chr18:5995599-5995236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:242
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):39, 79

               
               
               Conread position:282-631
               
               
               Cow position:chr18:17005368-17005009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 16

               
               
               Conread position:286-632
               
               
               Cow position:chr18:47517095-47517451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:243
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):13, 59

               
               
               Conread position:295-632
               
               
               Cow position:chr18:25282459-25282797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):97, 26

               
               
               Conread position:299-632
               
               
               Cow position:chr18:21768711-21768385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:243
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):22, 47

               
               
               Conread position:299-643
               
               
               Cow position:chr18:19273002-19273358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:250
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):13, 44

               
               
               Conread position:304-632
               
               
               Cow position:chr18:15025760-15025437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:232
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):43, 12

               
               
               Conread position:309-624
               
               
               Cow position:chr18:43020321-43020624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):25, 33

               
               
               Conread position:317-632
               
               
               Cow position:chr18:36459003-36458692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):56, 16

               
               
               Conread position:318-645
               
               
               Cow position:chr18:13507668-13507987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:215
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):76, 13

               
               
               Conread position:319-593
               
               
               Cow position:chr18:18369289-18369566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:186
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):20, 11

               
               
               Conread position:319-632
               
               
               Cow position:chr18:39875187-39875500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):64, 37

               
               
               Conread position:319-632
               
               
               Cow position:chr18:45571085-45570779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):95, 32

               
               
               Conread position:320-625
               
               
               Cow position:chr18:25984505-25984808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:215
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):118, 21

               
               
               Conread position:320-629
               
               
               Cow position:chr18:56184007-56183698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):132, 87

               
               
               Conread position:320-632
               
               
               Cow position:chr18:1495375-1495063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):89, 47

               
               
               Conread position:320-632
               
               
               Cow position:chr18:11685054-11684746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):94, 87

               
               
               Conread position:320-633
               
               
               Cow position:chr18:5711581-5711910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):102, 274

               
               
               Conread position:322-632
               
               
               Cow position:chr18:3044511-3044188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:218
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):119, 19

               
               
               Conread position:323-586
               
               
               Cow position:chr18:27109224-27109493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):80, 18

               
               
               Conread position:323-624
               
               
               Cow position:chr18:48828707-48829021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:221
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):39, 18

               
               
               Conread position:323-629
               
               
               Cow position:chr18:6609783-6610096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:219
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):18, 90

               
               
               Conread position:323-631
               
               
               Cow position:chr18:56159529-56159223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 25

               
               
               Conread position:323-632
               
               
               Cow position:chr18:7359813-7359492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:226
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):27, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr18:10656507-10656203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:209
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):85, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr18:21192346-21192651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):85, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr18:22214556-22214245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):85, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr18:33157883-33157579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):72, 12

               
               
               Conread position:323-632
               
               
               Cow position:chr18:33506545-33506844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):93, 26

               
               
               Conread position:323-632
               
               
               Cow position:chr18:52635002-52635325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):84, 26

               
               
               Conread position:323-632
               
               
               Cow position:chr18:56171946-56172262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):84, 18

               
               
               Conread position:324-624
               
               
               Cow position:chr18:35012249-35012540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):125, 83

               
               
               Conread position:325-632
               
               
               Cow position:chr18:23476621-23476916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:215
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):89, 16

               
               
               Conread position:327-636
               
               
               Cow position:chr18:55138737-55139043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):83, 24

               
               
               Conread position:328-631
               
               
               Cow position:chr18:51212247-51211941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):80, 46

               
               
               Conread position:328-632
               
               
               Cow position:chr18:4381357-4381052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):75, 23

               
               
               Conread position:328-635
               
               
               Cow position:chr18:32773942-32773631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):81, 21

               
               
               Conread position:329-629
               
               
               Cow position:chr18:35797682-35797385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):159, 38

               
               
               Conread position:340-632
               
               
               Cow position:chr18:38344858-38344558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):74, 67

               
               
               Conread position:340-632
               
               
               Cow position:chr18:40759259-40758973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:212
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):64, 116

               
               
               Conread position:344-629
               
               
               Cow position:chr18:5487291-5487012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):8, 71

               
               
               Conread position:351-628
               
               
               Cow position:chr18:40149956-40149683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):23, 100

               
               
               Conread position:351-631
               
               
               Cow position:chr18:50082216-50082486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:190
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:351-632
               
               
               Cow position:chr18:4625929-4625653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):118, 56

               
               
               Conread position:353-632
               
               
               Cow position:chr18:14815309-14815577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):69, 41

               
               
               Conread position:355-607
               
               
               Cow position:chr18:47812506-47812253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):48, 12

               
               
               Conread position:358-624
               
               
               Cow position:chr18:28768400-28768132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):48, 102

               
               
               Conread position:367-635
               
               
               Cow position:chr18:8104914-8105189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):28, 80

               
               
               Conread position:373-632
               
               
               Cow position:chr18:14048728-14048471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):31, 77

               
               
               Conread position:374-632
               
               
               Cow position:chr18:267801-268053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:190
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):33, 38

               
               
               Conread position:375-632
               
               
               Cow position:chr18:16417689-16417939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):38, 32

               
               
               Conread position:379-622
               
               
               Cow position:chr18:219349-219100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):35, 18

               
               
               Conread position:379-631
               
               
               Cow position:chr18:4648737-4648976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):164, 13

               
               
               Conread position:379-632
               
               
               Cow position:chr18:36098225-36097958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):29, 55

               
               
               Conread position:382-632
               
               
               Cow position:chr18:21205376-21205124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):13, 27

               
               
               Conread position:383-632
               
               
               Cow position:chr18:20481873-20482116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):25, 76

               
               
               Conread position:384-630
               
               
               Cow position:chr18:48453696-48453453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):24, 74

               
               
               Conread position:391-629
               
               
               Cow position:chr18:35636345-35636589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):23, 16

               
               
               Conread position:399-632
               
               
               Cow position:chr18:48290450-48290680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):17, 10

               
               
               Conread position:402-632
               
               
               Cow position:chr18:11680710-11680478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):67, 49

               
               
               Conread position:407-632
               
               
               Cow position:chr18:7059202-7058988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):108, 10

               
               
               Conread position:409-645
               
               
               Cow position:chr18:39709869-39709635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):5, 14

               
               
               Conread position:411-618
               
               
               Cow position:chr18:1582293-1582511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):31, 95

               
               
               Conread position:411-625
               
               
               Cow position:chr18:14871893-14872101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):132, 36

               
               
               Conread position:411-631
               
               
               Cow position:chr18:34621383-34621608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):132, 60

               
               
               Conread position:411-631
               
               
               Cow position:chr18:47868442-47868214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):71, 47

               
               
               Conread position:411-645
               
               
               Cow position:chr18:35582120-35582357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):53, 42

               
               
               Conread position:425-632
               
               
               Cow position:chr18:8164070-8164282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):73, 26

               
               
               Conread position:432-645
               
               
               Cow position:chr18:5247555-5247774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):111, 22

               
               
               Conread position:440-628
               
               
               Cow position:chr18:24022328-24022142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):60, 106

               
               
               Conread position:440-632
               
               
               Cow position:chr18:49543428-49543236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):18, 132

               
               
               Conread position:442-631
               
               
               Cow position:chr18:35076334-35076145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):47, 9

               
               
               Conread position:443-609
               
               
               Cow position:chr18:29188962-29188790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):55, 119

               
               
               Conread position:446-629
               
               
               Cow position:chr18:28823023-28823208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):52, 12

               
               
               Conread position:446-631
               
               
               Cow position:chr18:33606577-33606391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):54, 150

               
               
               Conread position:447-645
               
               
               Cow position:chr18:4316254-4316052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):51, 11

               
               
               Conread position:458-632
               
               
               Cow position:chr18:3098384-3098556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):39, 117

               
               
               Conread position:458-632
               
               
               Cow position:chr18:36445373-36445190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):40, 99

               
               
               Conread position:463-627
               
               
               Cow position:chr18:43564158-43563989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):63, 80

               
               
               Conread position:463-629
               
               
               Cow position:chr18:23807944-23808112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):35, 105

               
               
               Conread position:463-632
               
               
               Cow position:chr18:12809787-12809617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):34, 112

               
               
               Conread position:470-632
               
               
               Cow position:chr18:5647170-5647004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:470-632
               
               
               Cow position:chr18:9818760-9818594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:470-632
               
               
               Cow position:chr18:11166902-11166737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:470-632
               
               
               Cow position:chr18:35827488-35827657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):34, 74

               
               
               Conread position:470-632
               
               
               Cow position:chr18:47314367-47314536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:470-632
               
               
               Cow position:chr18:47930943-47931102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):28, 119

               
               
               Conread position:472-635
               
               
               Cow position:chr18:4857983-4858153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):26, 137

               
               
               Conread position:472-653
               
               
               Cow position:chr18:35908543-35908360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):26, 9

               
               
               Conread position:475-645
               
               
               Cow position:chr18:49161526-49161711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:481-620
               
               
               Cow position:chr18:55715934-55716078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:481-645
               
               
               Cow position:chr18:601272-601428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:490-632
               
               
               Cow position:chr18:56192689-56192832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):49, 138

               
               
               Conread position:493-630
               
               
               Cow position:chr18:13172619-13172762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:493-632
               
               
               Cow position:chr18:16184533-16184670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:493-632
               
               
               Cow position:chr18:18976986-18976842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):46, 12

               
               
               Conread position:493-632
               
               
               Cow position:chr18:24342518-24342384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):50, 73

               
               
               Conread position:493-632
               
               
               Cow position:chr18:48407690-48407547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:493-632
               
               
               Cow position:chr18:50637562-50637705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):42, 50

               
               
               Conread position:493-635
               
               
               Cow position:chr18:24636405-24636269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:493-645
               
               
               Cow position:chr18:56361704-56361856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):22, 37

               
               
               Conread position:494-650
               
               
               Cow position:chr18:1733296-1733452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):5, 106

               
               
               Conread position:495-625
               
               
               Cow position:chr18:39115244-39115379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:495-630
               
               
               Cow position:chr18:6290682-6290544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):88, 131

               
               
               Conread position:495-631
               
               
               Cow position:chr18:33407510-33407369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr18:2354795-2354652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr18:11183840-11183699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr18:13293405-13293267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr18:25647357-25647492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr18:30794329-30794192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr18:32244125-32244257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):20, 73

               
               
               Conread position:495-632
               
               
               Cow position:chr18:49665263-49665394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:495-633
               
               
               Cow position:chr18:28923941-28924075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:495-635
               
               
               Cow position:chr18:3018181-3018324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):90, 75

               
               
               Conread position:495-645
               
               
               Cow position:chr18:25206295-25206447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:496-631
               
               
               Cow position:chr18:34527205-34527343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:496-632
               
               
               Cow position:chr18:4539985-4540118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:496-635
               
               
               Cow position:chr18:33007954-33007811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:497-632
               
               
               Cow position:chr18:3422614-3422478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):7, 80

               
               
               Conread position:497-632
               
               
               Cow position:chr18:15880965-15881099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):40, 48

               
               
               Conread position:497-632
               
               
               Cow position:chr18:30248238-30248370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:497-644
               
               
               Cow position:chr18:24945914-24946069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:498-613
               
               
               Cow position:chr18:2619300-2619420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:99
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:499-632
               
               
               Cow position:chr18:2099461-2099595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:499-632
               
               
               Cow position:chr18:56163478-56163345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:106
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:501-626
               
               
               Cow position:chr18:11811865-11811742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:100
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:501-631
               
               
               Cow position:chr18:21721388-21721521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:501-632
               
               
               Cow position:chr18:15172921-15172790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:501-632
               
               
               Cow position:chr18:41270985-41270848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:501-632
               
               
               Cow position:chr18:45395895-45395759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):42, 65

               
               
               Conread position:504-626
               
               
               Cow position:chr18:33882770-33882894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):83, 39

               
               
               Conread position:504-645
               
               
               Cow position:chr18:46727486-46727341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:505-632
               
               
               Cow position:chr18:19761586-19761456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):38, 61

               
               
               Conread position:509-632
               
               
               Cow position:chr18:13507453-13507570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:514-630
               
               
               Cow position:chr18:52402640-52402758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:515-630
               
               
               Cow position:chr18:11695153-11695039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:93
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):76, 40

               
               
               Conread position:522-632
               
               
               Cow position:chr18:44483886-44484001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:94
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:528-630
               
               
               Cow position:chr18:24508342-24508445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:87
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:200-409
               
               
               Cow position:chr19:55742061-55742279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):36, 160

               
               
               Conread position:204-419
               
               
               Cow position:chr19:51294069-51294290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):115, 155

               
               
               Conread position:204-610
               
               
               Cow position:chr19:729529-729938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:292
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):27, 62

               
               
               Conread position:206-627
               
               
               Cow position:chr19:44397721-44397284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:289
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):95, 58

               
               
               Conread position:206-631
               
               
               Cow position:chr19:41946398-41945969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:270
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):43, 295

               
               
               Conread position:206-632
               
               
               Cow position:chr19:30471143-30471558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:291
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):115, 106

               
               
               Conread position:206-632
               
               
               Cow position:chr19:31378390-31378830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:292
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):19, 158

               
               
               Conread position:206-632
               
               
               Cow position:chr19:40051179-40051607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:306
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):25, 61

               
               
               Conread position:209-334
               
               
               Cow position:chr19:39662117-39662244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:99
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:209-632
               
               
               Cow position:chr19:1355818-1355392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:287
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):27, 155

               
               
               Conread position:211-412
               
               
               Cow position:chr19:4586340-4586544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):102, 143

               
               
               Conread position:211-632
               
               
               Cow position:chr19:46455049-46454629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:287
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):112, 26

               
               
               Conread position:212-325
               
               
               Cow position:chr19:43292543-43292428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:92
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:212-325
               
               
               Cow position:chr19:54103111-54102997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:92
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:212-428
               
               
               Cow position:chr19:49290250-49290472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):109, 134

               
               
               Conread position:213-627
               
               
               Cow position:chr19:36097431-36097005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:289
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):103, 251

               
               
               Conread position:213-632
               
               
               Cow position:chr19:43431115-43431542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 148

               
               
               Conread position:214-324
               
               
               Cow position:chr19:47727433-47727543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:89
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:214-417
               
               
               Cow position:chr19:12714312-12714095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):5, 148

               
               
               Conread position:214-450
               
               
               Cow position:chr19:30007394-30007152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):16, 52

               
               
               Conread position:214-623
               
               
               Cow position:chr19:55957364-55957797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:296
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):86, 17

               
               
               Conread position:215-325
               
               
               Cow position:chr19:19468591-19468481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:88
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:215-400
               
               
               Cow position:chr19:42544735-42544542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):102, 143

               
               
               Conread position:215-406
               
               
               Cow position:chr19:48914476-48914663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:215-417
               
               
               Cow position:chr19:6093679-6093481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):98, 125

               
               
               Conread position:215-449
               
               
               Cow position:chr19:2068471-2068228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):16, 140

               
               
               Conread position:215-567
               
               
               Cow position:chr19:46094420-46094795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:255
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:215-620
               
               
               Cow position:chr19:42564352-42563923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 143

               
               
               Conread position:215-632
               
               
               Cow position:chr19:2577764-2577355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:291
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):97, 17

               
               
               Conread position:215-632
               
               
               Cow position:chr19:25053451-25053894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:291
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):16, 206

               
               
               Conread position:215-632
               
               
               Cow position:chr19:28924965-28924522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:306
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):59, 144

               
               
               Conread position:215-641
               
               
               Cow position:chr19:35847106-35846664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:285
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):111, 22

               
               
               Conread position:216-317
               
               
               Cow position:chr19:6541466-6541364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:85
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:216-326
               
               
               Cow position:chr19:2322108-2321998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:88
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:216-413
               
               
               Cow position:chr19:23297941-23297736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):101, 144

               
               
               Conread position:216-415
               
               
               Cow position:chr19:42575351-42575157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):129, 120

               
               
               Conread position:216-417
               
               
               Cow position:chr19:42776638-42776428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):100, 143

               
               
               Conread position:216-420
               
               
               Cow position:chr19:13325294-13325493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):186, 83

               
               
               Conread position:216-420
               
               
               Cow position:chr19:20378831-20379038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):93, 32

               
               
               Conread position:216-451
               
               
               Cow position:chr19:37406120-37405884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):81, 49

               
               
               Conread position:216-494
               
               
               Cow position:chr19:6309717-6309998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):20, 135

               
               
               Conread position:216-506
               
               
               Cow position:chr19:38411076-38410774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):15, 54

               
               
               Conread position:216-588
               
               
               Cow position:chr19:40450205-40449839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:252
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):191, 20

               
               
               Conread position:216-597
               
               
               Cow position:chr19:44052-43659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:270
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):15, 137

               
               
               Conread position:216-600
               
               
               Cow position:chr19:10242775-10242395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:256
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):22, 33

               
               
               Conread position:216-608
               
               
               Cow position:chr19:2690007-2690395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:260
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):61, 55

               
               
               Conread position:216-621
               
               
               Cow position:chr19:25673314-25673729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:294
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):56, 100

               
               
               Conread position:216-629
               
               
               Cow position:chr19:38842350-38842773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:280
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):14, 77

               
               
               Conread position:216-630
               
               
               Cow position:chr19:1968118-1968523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:261
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):105, 20

               
               
               Conread position:216-632
               
               
               Cow position:chr19:5115688-5116088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:270
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):168, 81

               
               
               Conread position:216-632
               
               
               Cow position:chr19:17796117-17795674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:285
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:216-632
               
               
               Cow position:chr19:22765815-22765396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:284
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):97, 16

               
               
               Conread position:216-632
               
               
               Cow position:chr19:28554147-28554570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:283
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):101, 53

               
               
               Conread position:216-632
               
               
               Cow position:chr19:32754737-32754293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:296
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):18, 156

               
               
               Conread position:216-632
               
               
               Cow position:chr19:36845449-36845027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 135

               
               
               Conread position:216-632
               
               
               Cow position:chr19:41024425-41024008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:288
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):97, 124

               
               
               Conread position:216-632
               
               
               Cow position:chr19:43035444-43035021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 15

               
               
               Conread position:216-633
               
               
               Cow position:chr19:22039980-22039549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:282
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):11, 146

               
               
               Conread position:216-645
               
               
               Cow position:chr19:53776361-53776812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:301
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):14, 148

               
               
               Conread position:217-369
               
               
               Cow position:chr19:25582504-25582350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):96, 11

               
               
               Conread position:217-392
               
               
               Cow position:chr19:20517627-20517458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:217-397
               
               
               Cow position:chr19:7794853-7794670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:217-412
               
               
               Cow position:chr19:41946925-41946719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):21, 132

               
               
               Conread position:217-445
               
               
               Cow position:chr19:12103178-12103407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):95, 139

               
               
               Conread position:217-445
               
               
               Cow position:chr19:52356456-52356221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):14, 131

               
               
               Conread position:217-532
               
               
               Cow position:chr19:750393-750089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):196, 84

               
               
               Conread position:217-562
               
               
               Cow position:chr19:15853129-15852797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:230
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):104, 179

               
               
               Conread position:217-624
               
               
               Cow position:chr19:33290670-33290269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:289
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):17, 92

               
               
               Conread position:217-628
               
               
               Cow position:chr19:19431415-19431016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:277
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):96, 14

               
               
               Conread position:217-628
               
               
               Cow position:chr19:23784218-23784618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:277
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):21, 94

               
               
               Conread position:217-632
               
               
               Cow position:chr19:6417810-6417378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:299
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):103, 15

               
               
               Conread position:217-632
               
               
               Cow position:chr19:12602005-12601591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:286
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):96, 123

               
               
               Conread position:217-632
               
               
               Cow position:chr19:29368598-29368178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:279
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):104, 128

               
               
               Conread position:217-632
               
               
               Cow position:chr19:29626103-29625683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:276
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):104, 129

               
               
               Conread position:217-632
               
               
               Cow position:chr19:35762052-35762477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:282
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):96, 120

               
               
               Conread position:217-632
               
               
               Cow position:chr19:39361357-39360919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:302
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):21, 141

               
               
               Conread position:217-632
               
               
               Cow position:chr19:42242770-42243179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:284
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):83, 14

               
               
               Conread position:217-632
               
               
               Cow position:chr19:43413982-43413560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:260
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):82, 231

               
               
               Conread position:217-632
               
               
               Cow position:chr19:56149858-56150289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:280
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):17, 225

               
               
               Conread position:218-551
               
               
               Cow position:chr19:13121082-13121414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):21, 137

               
               
               Conread position:218-583
               
               
               Cow position:chr19:26754240-26753865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:252
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):106, 39

               
               
               Conread position:218-585
               
               
               Cow position:chr19:55395108-55394732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:270
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):98, 11

               
               
               Conread position:218-629
               
               
               Cow position:chr19:268549-268135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 14

               
               
               Conread position:218-630
               
               
               Cow position:chr19:16621155-16621574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:272
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):9, 193

               
               
               Conread position:218-631
               
               
               Cow position:chr19:432921-433348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:285
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):21, 34

               
               
               Conread position:218-631
               
               
               Cow position:chr19:5912758-5913170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 10

               
               
               Conread position:218-632
               
               
               Cow position:chr19:4445422-4445841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:280
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):11, 104

               
               
               Conread position:218-632
               
               
               Cow position:chr19:5433372-5433782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:293
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):19, 10

               
               
               Conread position:218-632
               
               
               Cow position:chr19:10755503-10755090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:291
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):97, 137

               
               
               Conread position:218-637
               
               
               Cow position:chr19:11376221-11376630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:281
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):185, 13

               
               
               Conread position:219-404
               
               
               Cow position:chr19:38009828-38010004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:219-405
               
               
               Cow position:chr19:31729468-31729272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):21, 142

               
               
               Conread position:219-406
               
               
               Cow position:chr19:41188036-41187847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):90, 13

               
               
               Conread position:219-428
               
               
               Cow position:chr19:55756263-55756056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):104, 13

               
               
               Conread position:219-574
               
               
               Cow position:chr19:39384847-39385200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:242
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):95, 13

               
               
               Conread position:219-609
               
               
               Cow position:chr19:3217206-3216823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:259
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):20, 75

               
               
               Conread position:219-630
               
               
               Cow position:chr19:13316209-13316631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:298
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):74, 51

               
               
               Conread position:219-632
               
               
               Cow position:chr19:25726684-25727098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:280
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):77, 44

               
               
               Conread position:219-632
               
               
               Cow position:chr19:30232909-30232508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:274
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):88, 11

               
               
               Conread position:219-632
               
               
               Cow position:chr19:39246114-39245679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:292
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):11, 69

               
               
               Conread position:219-632
               
               
               Cow position:chr19:48723234-48722804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:284
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):68, 54

               
               
               Conread position:219-632
               
               
               Cow position:chr19:55590433-55590012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 10

               
               
               Conread position:220-420
               
               
               Cow position:chr19:28037717-28037914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):119, 8

               
               
               Conread position:220-444
               
               
               Cow position:chr19:38021639-38021411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):134, 20

               
               
               Conread position:220-455
               
               
               Cow position:chr19:47184881-47185125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):39, 10

               
               
               Conread position:220-629
               
               
               Cow position:chr19:33033245-33033664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:274
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):97, 10

               
               
               Conread position:220-631
               
               
               Cow position:chr19:24145219-24144797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:288
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):95, 9

               
               
               Conread position:220-632
               
               
               Cow position:chr19:14253833-14253413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 11

               
               
               Conread position:220-632
               
               
               Cow position:chr19:20622857-20622437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 58

               
               
               Conread position:221-415
               
               
               Cow position:chr19:7594955-7595148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):17, 124

               
               
               Conread position:221-462
               
               
               Cow position:chr19:35921050-35920807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):73, 134

               
               
               Conread position:221-629
               
               
               Cow position:chr19:16096354-16096770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:275
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):97, 131

               
               
               Conread position:221-632
               
               
               Cow position:chr19:10213865-10213450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:272
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):102, 25

               
               
               Conread position:222-632
               
               
               Cow position:chr19:11191424-11191843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 10

               
               
               Conread position:224-627
               
               
               Cow position:chr19:17972073-17972475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:265
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):102, 19

               
               
               Conread position:224-632
               
               
               Cow position:chr19:6532070-6531670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):209, 84

               
               
               Conread position:224-632
               
               
               Cow position:chr19:15438301-15437888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 134

               
               
               Conread position:224-632
               
               
               Cow position:chr19:15887120-15887544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 398

               
               
               Conread position:224-642
               
               
               Cow position:chr19:7158518-7158963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:305
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):12, 195

               
               
               Conread position:228-403
               
               
               Cow position:chr19:28918603-28918423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):8, 172

               
               
               Conread position:228-405
               
               
               Cow position:chr19:12093554-12093368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):71, 142

               
               
               Conread position:228-412
               
               
               Cow position:chr19:2137635-2137822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):8, 117

               
               
               Conread position:228-412
               
               
               Cow position:chr19:33610082-33609893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):93, 120

               
               
               Conread position:228-473
               
               
               Cow position:chr19:17355051-17354797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):99, 120

               
               
               Conread position:228-632
               
               
               Cow position:chr19:9387808-9387413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:272
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):194, 71

               
               
               Conread position:228-632
               
               
               Cow position:chr19:23005166-23005586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:275
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):8, 129

               
               
               Conread position:228-632
               
               
               Cow position:chr19:28451584-28451184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:281
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):8, 133

               
               
               Conread position:228-632
               
               
               Cow position:chr19:38393000-38392577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:283
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):92, 70

               
               
               Conread position:229-624
               
               
               Cow position:chr19:19804330-19804745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:270
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):90, 139

               
               
               Conread position:230-622
               
               
               Cow position:chr19:48960584-48960179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:277
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):8, 113

               
               
               Conread position:230-632
               
               
               Cow position:chr19:39751661-39751260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:274
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):83, 92

               
               
               Conread position:232-403
               
               
               Cow position:chr19:5521970-5522144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):89, 82

               
               
               Conread position:232-406
               
               
               Cow position:chr19:39584136-39583955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):82, 126

               
               
               Conread position:232-415
               
               
               Cow position:chr19:7558734-7558543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:232-420
               
               
               Cow position:chr19:3857722-3857914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):57, 111

               
               
               Conread position:232-420
               
               
               Cow position:chr19:37067321-37067134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):179, 84

               
               
               Conread position:232-421
               
               
               Cow position:chr19:19738191-19737994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):87, 116

               
               
               Conread position:232-436
               
               
               Cow position:chr19:10597672-10597474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):77, 19

               
               
               Conread position:232-445
               
               
               Cow position:chr19:32437716-32437932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):176, 96

               
               
               Conread position:232-496
               
               
               Cow position:chr19:4459252-4459524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):11, 113

               
               
               Conread position:232-532
               
               
               Cow position:chr19:25570780-25570484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):75, 122

               
               
               Conread position:232-538
               
               
               Cow position:chr19:42887120-42886832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):86, 46

               
               
               Conread position:232-606
               
               
               Cow position:chr19:24759699-24760079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:256
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):63, 213

               
               
               Conread position:232-626
               
               
               Cow position:chr19:3811834-3812230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:267
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):89, 113

               
               
               Conread position:232-626
               
               
               Cow position:chr19:20687209-20686829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:262
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):153, 45

               
               
               Conread position:232-626
               
               
               Cow position:chr19:22043169-22043558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:267
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):75, 127

               
               
               Conread position:232-630
               
               
               Cow position:chr19:12698505-12698104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 16

               
               
               Conread position:232-630
               
               
               Cow position:chr19:51620989-51621402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 127

               
               
               Conread position:232-631
               
               
               Cow position:chr19:24137453-24137038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 32

               
               
               Conread position:232-631
               
               
               Cow position:chr19:34955526-34955917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:271
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):182, 18

               
               
               Conread position:232-631
               
               
               Cow position:chr19:43058726-43058315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:286
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):71, 67

               
               
               Conread position:232-632
               
               
               Cow position:chr19:3621617-3621208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:280
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):43, 110

               
               
               Conread position:232-632
               
               
               Cow position:chr19:8209218-8209610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:266
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):182, 175

               
               
               Conread position:232-632
               
               
               Cow position:chr19:10081276-10080848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 129

               
               
               Conread position:232-632
               
               
               Cow position:chr19:13267018-13267404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:274
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):262, 82

               
               
               Conread position:232-632
               
               
               Cow position:chr19:16567347-16566937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:262
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):41, 128

               
               
               Conread position:232-632
               
               
               Cow position:chr19:21199338-21198906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:289
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):77, 240

               
               
               Conread position:232-632
               
               
               Cow position:chr19:27611990-27612389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:277
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):13, 28

               
               
               Conread position:232-632
               
               
               Cow position:chr19:33912438-33912854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:285
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):88, 123

               
               
               Conread position:232-632
               
               
               Cow position:chr19:42695177-42694767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 110

               
               
               Conread position:232-632
               
               
               Cow position:chr19:50562871-50562463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:278
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):80, 118

               
               
               Conread position:232-632
               
               
               Cow position:chr19:53371704-53372117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 130

               
               
               Conread position:232-632
               
               
               Cow position:chr19:53791245-53791651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:274
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):81, 121

               
               
               Conread position:232-632
               
               
               Cow position:chr19:55247821-55247405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:297
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):27, 116

               
               
               Conread position:232-645
               
               
               Cow position:chr19:10186695-10186266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:280
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):89, 194

               
               
               Conread position:233-420
               
               
               Cow position:chr19:30227709-30227512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):94, 17

               
               
               Conread position:233-421
               
               
               Cow position:chr19:29958501-29958687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):124, 66

               
               
               Conread position:233-548
               
               
               Cow position:chr19:25041058-25041375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):120, 19

               
               
               Conread position:233-596
               
               
               Cow position:chr19:56063255-56063619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:241
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):172, 73

               
               
               Conread position:233-632
               
               
               Cow position:chr19:2589702-2589290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:293
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):87, 33

               
               
               Conread position:233-632
               
               
               Cow position:chr19:7668882-7668484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:262
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):107, 73

               
               
               Conread position:233-632
               
               
               Cow position:chr19:38907193-38907576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:265
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):181, 54

               
               
               Conread position:234-629
               
               
               Cow position:chr19:20935939-20935536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 110

               
               
               Conread position:235-595
               
               
               Cow position:chr19:47859129-47859495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:254
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):84, 24

               
               
               Conread position:235-621
               
               
               Cow position:chr19:32505923-32506320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:272
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):68, 122

               
               
               Conread position:235-632
               
               
               Cow position:chr19:38339790-38340197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:281
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):72, 46

               
               
               Conread position:236-413
               
               
               Cow position:chr19:39698471-39698286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):83, 110

               
               
               Conread position:236-588
               
               
               Cow position:chr19:36139038-36138677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):76, 120

               
               
               Conread position:236-625
               
               
               Cow position:chr19:34166552-34166150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 35

               
               
               Conread position:236-630
               
               
               Cow position:chr19:23304305-23304713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 54

               
               
               Conread position:236-631
               
               
               Cow position:chr19:6079166-6079579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:284
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):63, 233

               
               
               Conread position:236-631
               
               
               Cow position:chr19:7637051-7637456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 214

               
               
               Conread position:236-632
               
               
               Cow position:chr19:1153372-1153001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:265
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:236-632
               
               
               Cow position:chr19:8128492-8128095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:280
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):52, 47

               
               
               Conread position:236-632
               
               
               Cow position:chr19:35380356-35380770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:271
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):68, 214

               
               
               Conread position:236-632
               
               
               Cow position:chr19:39576390-39576791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:264
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):162, 225

               
               
               Conread position:236-645
               
               
               Cow position:chr19:20661228-20661649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:273
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):77, 182

               
               
               Conread position:237-478
               
               
               Cow position:chr19:39612988-39613235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):13, 105

               
               
               Conread position:237-632
               
               
               Cow position:chr19:6687814-6688226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 125

               
               
               Conread position:237-632
               
               
               Cow position:chr19:8864926-8864528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 152

               
               
               Conread position:241-632
               
               
               Cow position:chr19:11171036-11171440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:273
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):27, 121

               
               
               Conread position:242-618
               
               
               Cow position:chr19:25526457-25526079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:265
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):53, 100

               
               
               Conread position:242-632
               
               
               Cow position:chr19:387310-386923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:268
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):78, 19

               
               
               Conread position:242-632
               
               
               Cow position:chr19:13130042-13129661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:259
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):53, 100

               
               
               Conread position:242-632
               
               
               Cow position:chr19:33903248-33903643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:266
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):76, 177

               
               
               Conread position:242-632
               
               
               Cow position:chr19:35540461-35540084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:275
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):142, 64

               
               
               Conread position:242-645
               
               
               Cow position:chr19:15067831-15068227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:265
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):34, 165

               
               
               Conread position:243-437
               
               
               Cow position:chr19:6854109-6854306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):70, 22

               
               
               Conread position:243-632
               
               
               Cow position:chr19:26975894-26976269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:269
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):77, 100

               
               
               Conread position:243-632
               
               
               Cow position:chr19:54943143-54942754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:268
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):81, 101

               
               
               Conread position:244-632
               
               
               Cow position:chr19:39057425-39057024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:264
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):6, 174

               
               
               Conread position:246-419
               
               
               Cow position:chr19:12469640-12469813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):67, 97

               
               
               Conread position:246-487
               
               
               Cow position:chr19:25410680-25410917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:246-555
               
               
               Cow position:chr19:29115903-29115600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):89, 14

               
               
               Conread position:246-624
               
               
               Cow position:chr19:41585146-41584762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:257
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):52, 170

               
               
               Conread position:246-626
               
               
               Cow position:chr19:3245881-3246261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:259
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):50, 93

               
               
               Conread position:246-632
               
               
               Cow position:chr19:1712985-1713364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:257
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):146, 36

               
               
               Conread position:246-632
               
               
               Cow position:chr19:21378292-21378686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:269
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):46, 191

               
               
               Conread position:246-632
               
               
               Cow position:chr19:27180066-27180480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:284
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):92, 87

               
               
               Conread position:246-632
               
               
               Cow position:chr19:35018057-35018468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:264
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):53, 215

               
               
               Conread position:248-632
               
               
               Cow position:chr19:39103841-39104232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:267
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):79, 163

               
               
               Conread position:249-575
               
               
               Cow position:chr19:21817137-21816798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:241
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):72, 101

               
               
               Conread position:253-632
               
               
               Cow position:chr19:51750999-51751392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:265
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):70, 94

               
               
               Conread position:257-632
               
               
               Cow position:chr19:1664020-1664415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:264
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):55, 282

               
               
               Conread position:262-632
               
               
               Cow position:chr19:10545548-10545929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:249
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):59, 213

               
               
               Conread position:263-632
               
               
               Cow position:chr19:32457801-32457421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 94

               
               
               Conread position:271-632
               
               
               Cow position:chr19:23786325-23785968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):73, 43

               
               
               Conread position:282-631
               
               
               Cow position:chr19:36722445-36722104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):11, 117

               
               
               Conread position:282-633
               
               
               Cow position:chr19:8375172-8375523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):120, 16

               
               
               Conread position:284-632
               
               
               Cow position:chr19:23222763-23222414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):37, 61

               
               
               Conread position:289-632
               
               
               Cow position:chr19:5656000-5656331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:230
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):125, 29

               
               
               Conread position:290-632
               
               
               Cow position:chr19:7473824-7473478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:243
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):30, 54

               
               
               Conread position:291-561
               
               
               Cow position:chr19:4800863-4800593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):112, 26

               
               
               Conread position:294-632
               
               
               Cow position:chr19:34619910-34620249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:230
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):114, 26

               
               
               Conread position:295-632
               
               
               Cow position:chr19:22134032-22134366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):18, 48

               
               
               Conread position:298-631
               
               
               Cow position:chr19:29627277-29627594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:223
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):168, 38

               
               
               Conread position:298-632
               
               
               Cow position:chr19:6516383-6516039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:240
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):22, 44

               
               
               Conread position:298-632
               
               
               Cow position:chr19:21335480-21335837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):79, 43

               
               
               Conread position:299-571
               
               
               Cow position:chr19:30552130-30551866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:193
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):115, 14

               
               
               Conread position:299-616
               
               
               Cow position:chr19:53840630-53840311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:218
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):108, 42

               
               
               Conread position:299-630
               
               
               Cow position:chr19:30886510-30886174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):25, 11

               
               
               Conread position:299-631
               
               
               Cow position:chr19:34001320-34000990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):11, 29

               
               
               Conread position:299-632
               
               
               Cow position:chr19:35742278-35741937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):19, 157

               
               
               Conread position:309-632
               
               
               Cow position:chr19:47118390-47118720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 93

               
               
               Conread position:310-632
               
               
               Cow position:chr19:43441271-43440942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):94, 25

               
               
               Conread position:314-632
               
               
               Cow position:chr19:16693932-16694269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):94, 27

               
               
               Conread position:314-632
               
               
               Cow position:chr19:30534028-30533720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):100, 42

               
               
               Conread position:316-632
               
               
               Cow position:chr19:20670809-20671122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):182, 19

               
               
               Conread position:318-632
               
               
               Cow position:chr19:17273643-17273941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):7, 25

               
               
               Conread position:319-632
               
               
               Cow position:chr19:18786227-18786546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):31, 26

               
               
               Conread position:319-632
               
               
               Cow position:chr19:21363342-21363664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):64, 143

               
               
               Conread position:319-632
               
               
               Cow position:chr19:36060033-36059711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):95, 88

               
               
               Conread position:319-645
               
               
               Cow position:chr19:20310544-20310864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:218
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):124, 87

               
               
               Conread position:320-622
               
               
               Cow position:chr19:19919368-19919673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:225
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):88, 21

               
               
               Conread position:320-631
               
               
               Cow position:chr19:31846456-31846762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):93, 87

               
               
               Conread position:320-632
               
               
               Cow position:chr19:14348105-14347791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 13

               
               
               Conread position:320-632
               
               
               Cow position:chr19:15862956-15863259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:218
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):56, 78

               
               
               Conread position:320-632
               
               
               Cow position:chr19:31595394-31595078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:220
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):88, 21

               
               
               Conread position:320-645
               
               
               Cow position:chr19:48475222-48474910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):129, 72

               
               
               Conread position:323-590
               
               
               Cow position:chr19:7884668-7884404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):59, 18

               
               
               Conread position:323-623
               
               
               Cow position:chr19:11424227-11424521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):85, 18

               
               
               Conread position:323-623
               
               
               Cow position:chr19:43292144-43291836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:222
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):55, 24

               
               
               Conread position:323-632
               
               
               Cow position:chr19:990324-990631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):90, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr19:4503310-4502999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):93, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr19:12036416-12036725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:210
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):26, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr19:22798987-22799304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):92, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr19:33469111-33468803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:223
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):82, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr19:36125677-36125363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:223
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):85, 25

               
               
               Conread position:323-632
               
               
               Cow position:chr19:51185512-51185206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):85, 12

               
               
               Conread position:323-633
               
               
               Cow position:chr19:14593146-14592828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):85, 18

               
               
               Conread position:323-645
               
               
               Cow position:chr19:12711785-12712114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):85, 26

               
               
               Conread position:324-632
               
               
               Cow position:chr19:47110130-47109818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):80, 17

               
               
               Conread position:325-632
               
               
               Cow position:chr19:22153761-22154082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):128, 16

               
               
               Conread position:335-632
               
               
               Cow position:chr19:51400935-51401229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:208
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):87, 57

               
               
               Conread position:338-632
               
               
               Cow position:chr19:36461453-36461748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):76, 29

               
               
               Conread position:340-616
               
               
               Cow position:chr19:35233576-35233855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):25, 69

               
               
               Conread position:341-632
               
               
               Cow position:chr19:2734523-2734231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):67, 111

               
               
               Conread position:346-631
               
               
               Cow position:chr19:34425647-34425368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):125, 49

               
               
               Conread position:349-620
               
               
               Cow position:chr19:4328988-4329256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):187, 97

               
               
               Conread position:349-632
               
               
               Cow position:chr19:31824948-31825236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):46, 103

               
               
               Conread position:351-627
               
               
               Cow position:chr19:8270537-8270823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):62, 56

               
               
               Conread position:351-632
               
               
               Cow position:chr19:26087258-26086974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):94, 58

               
               
               Conread position:351-632
               
               
               Cow position:chr19:42240232-42240512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):121, 41

               
               
               Conread position:352-632
               
               
               Cow position:chr19:10172060-10171780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:202
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):146, 60

               
               
               Conread position:352-632
               
               
               Cow position:chr19:51267946-51267674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:199
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):137, 70

               
               
               Conread position:356-597
               
               
               Cow position:chr19:10173057-10173302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:356-637
               
               
               Cow position:chr19:43418464-43418193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):21, 52

               
               
               Conread position:357-632
               
               
               Cow position:chr19:18750018-18750301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):57, 50

               
               
               Conread position:359-632
               
               
               Cow position:chr19:42205981-42205713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):79, 48

               
               
               Conread position:361-632
               
               
               Cow position:chr19:10232357-10232623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):44, 9

               
               
               Conread position:362-632
               
               
               Cow position:chr19:53657945-53657678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):5, 94

               
               
               Conread position:366-645
               
               
               Cow position:chr19:31874169-31873883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):43, 227

               
               
               Conread position:370-632
               
               
               Cow position:chr19:37646792-37647060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):22, 65

               
               
               Conread position:381-628
               
               
               Cow position:chr19:44125678-44125431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):26, 89

               
               
               Conread position:381-631
               
               
               Cow position:chr19:21065795-21065556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):22, 69

               
               
               Conread position:384-628
               
               
               Cow position:chr19:47187028-47187269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):11, 65

               
               
               Conread position:386-628
               
               
               Cow position:chr19:32451110-32450861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):28, 9

               
               
               Conread position:394-631
               
               
               Cow position:chr19:8839627-8839383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):12, 41

               
               
               Conread position:399-632
               
               
               Cow position:chr19:8211823-8212058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):98, 33

               
               
               Conread position:402-632
               
               
               Cow position:chr19:14992916-14993144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):96, 46

               
               
               Conread position:403-630
               
               
               Cow position:chr19:47727566-47727790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):122, 98

               
               
               Conread position:411-632
               
               
               Cow position:chr19:33307100-33306875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):85, 40

               
               
               Conread position:411-632
               
               
               Cow position:chr19:38596617-38596394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):83, 41

               
               
               Conread position:412-625
               
               
               Cow position:chr19:42746339-42746546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):86, 39

               
               
               Conread position:412-632
               
               
               Cow position:chr19:4448541-4448312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):81, 68

               
               
               Conread position:412-632
               
               
               Cow position:chr19:13390912-13390699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):14, 44

               
               
               Conread position:412-632
               
               
               Cow position:chr19:46918848-46918620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):86, 41

               
               
               Conread position:412-633
               
               
               Cow position:chr19:35622356-35622143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):86, 20

               
               
               Conread position:425-631
               
               
               Cow position:chr19:28921813-28921603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:446-632
               
               
               Cow position:chr19:3489467-3489276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):51, 35

               
               
               Conread position:458-632
               
               
               Cow position:chr19:2138149-2138326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:458-632
               
               
               Cow position:chr19:48409466-48409294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):40, 128

               
               
               Conread position:460-630
               
               
               Cow position:chr19:31762983-31762805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:463-629
               
               
               Cow position:chr19:18788153-18788322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:463-631
               
               
               Cow position:chr19:25851534-25851708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:463-631
               
               
               Cow position:chr19:25851878-25852052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:463-631
               
               
               Cow position:chr19:25864970-25865144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:463-632
               
               
               Cow position:chr19:10093244-10093075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):35, 123

               
               
               Conread position:467-630
               
               
               Cow position:chr19:30925375-30925537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):31, 66

               
               
               Conread position:470-617
               
               
               Cow position:chr19:6092713-6092559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:470-632
               
               
               Cow position:chr19:4537473-4537634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):19, 122

               
               
               Conread position:470-632
               
               
               Cow position:chr19:34911830-34911663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):19, 10

               
               
               Conread position:470-632
               
               
               Cow position:chr19:37423325-37423497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:470-632
               
               
               Cow position:chr19:51334619-51334447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):28, 169

               
               
               Conread position:471-632
               
               
               Cow position:chr19:19561454-19561285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:471-632
               
               
               Cow position:chr19:53037210-53037375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:481-632
               
               
               Cow position:chr19:38637873-38638022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):17, 85

               
               
               Conread position:493-632
               
               
               Cow position:chr19:27348352-27348483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:493-632
               
               
               Cow position:chr19:46159976-46159836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:494-633
               
               
               Cow position:chr19:17664560-17664418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):90, 12

               
               
               Conread position:495-619
               
               
               Cow position:chr19:2735049-2735176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):87, 74

               
               
               Conread position:495-629
               
               
               Cow position:chr19:8033662-8033522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:495-631
               
               
               Cow position:chr19:7492351-7492220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:112
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr19:4587804-4587941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:104
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr19:7612537-7612404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:111
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr19:19499637-19499776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):48, 63

               
               
               Conread position:495-632
               
               
               Cow position:chr19:20693413-20693276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):42, 50

               
               
               Conread position:495-632
               
               
               Cow position:chr19:24956528-24956663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr19:25572363-25572225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr19:25835440-25835577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:108
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr19:36176664-36176524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):92, 69

               
               
               Conread position:495-632
               
               
               Cow position:chr19:39794876-39794736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr19:42726277-42726134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr19:46180898-46181035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):42, 53

               
               
               Conread position:495-632
               
               
               Cow position:chr19:52381446-52381311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):42, 50

               
               
               Conread position:495-645
               
               
               Cow position:chr19:1580664-1580817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:495-645
               
               
               Cow position:chr19:25999546-25999398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:497-632
               
               
               Cow position:chr19:33823232-33823096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):29, 49

               
               
               Conread position:498-632
               
               
               Cow position:chr19:33882247-33882381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:501-622
               
               
               Cow position:chr19:38723936-38724061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:101
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:501-632
               
               
               Cow position:chr19:25025584-25025713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:103
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:502-632
               
               
               Cow position:chr19:10286815-10286687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:105
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:502-633
               
               
               Cow position:chr19:27104657-27104524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:505-629
               
               
               Cow position:chr19:53645508-53645633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:98
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:505-632
               
               
               Cow position:chr19:4340000-4340128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):32, 70

               
               
               Conread position:505-632
               
               
               Cow position:chr19:39697977-39697850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:103
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:505-645
               
               
               Cow position:chr19:42762990-42762852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):128, 34

               
               
               Conread position:507-631
               
               
               Cow position:chr19:46694057-46693933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:510-632
               
               
               Cow position:chr19:43702804-43702923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):54, 71

               
               
               Conread position:522-632
               
               
               Cow position:chr19:21115198-21115086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:92
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:192-629
               
               
               Cow position:chr2:30640429-30639982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:281
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):31, 109

               
               
               Conread position:193-628
               
               
               Cow position:chr2:45619157-45619600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:286
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):32, 220

               
               
               Conread position:198-651
               
               
               Cow position:chr2:38362145-38362600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:307
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):40, 66

               
               
               Conread position:199-420
               
               
               Cow position:chr2:23935622-23935412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):146, 30

               
               
               Conread position:199-535
               
               
               Cow position:chr2:19137659-19138005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):121, 33

               
               
               Conread position:200-631
               
               
               Cow position:chr2:54790516-54790070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 149

               
               
               Conread position:200-632
               
               
               Cow position:chr2:33402253-33402698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:294
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):36, 157

               
               
               Conread position:200-645
               
               
               Cow position:chr2:55526537-55526983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:310
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):15, 153

               
               
               Conread position:202-632
               
               
               Cow position:chr2:9063501-9063061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:292
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):45, 193

               
               
               Conread position:202-632
               
               
               Cow position:chr2:13369884-13369453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 26

               
               
               Conread position:202-632
               
               
               Cow position:chr2:67302250-67301827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 158

               
               
               Conread position:205-420
               
               
               Cow position:chr2:41007316-41007535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):103, 66

               
               
               Conread position:205-450
               
               
               Cow position:chr2:56003461-56003209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):110, 23

               
               
               Conread position:206-401
               
               
               Cow position:chr2:9416575-9416769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):14, 29

               
               
               Conread position:206-404
               
               
               Cow position:chr2:21171833-21171626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):25, 138

               
               
               Conread position:206-439
               
               
               Cow position:chr2:72315586-72315821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):120, 150

               
               
               Conread position:206-645
               
               
               Cow position:chr2:33531723-33532170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:305
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):119, 21

               
               
               Conread position:206-645
               
               
               Cow position:chr2:76340427-76340881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:300
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):119, 20

               
               
               Conread position:207-597
               
               
               Cow position:chr2:46342925-46343312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:252
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):114, 191

               
               
               Conread position:207-627
               
               
               Cow position:chr2:18621637-18621202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:287
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):106, 84

               
               
               Conread position:208-405
               
               
               Cow position:chr2:66561812-66562020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:208-420
               
               
               Cow position:chr2:25922637-25922414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):14, 80

               
               
               Conread position:208-631
               
               
               Cow position:chr2:59396830-59397267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 20

               
               
               Conread position:208-632
               
               
               Cow position:chr2:47403428-47402996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:291
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):107, 17

               
               
               Conread position:208-632
               
               
               Cow position:chr2:58074122-58074558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:290
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):107, 158

               
               
               Conread position:209-322
               
               
               Cow position:chr2:56095105-56094992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:93
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:209-326
               
               
               Cow position:chr2:34165388-34165273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:209-449
               
               
               Cow position:chr2:71487000-71486751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:209-632
               
               
               Cow position:chr2:36077583-36077135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 147

               
               
               Conread position:210-403
               
               
               Cow position:chr2:485794-485599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):111, 17

               
               
               Conread position:210-447
               
               
               Cow position:chr2:46125921-46126152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):110, 18

               
               
               Conread position:210-605
               
               
               Cow position:chr2:58868939-58869343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:260
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):107, 27

               
               
               Conread position:210-632
               
               
               Cow position:chr2:11599648-11599231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:285
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):11, 195

               
               
               Conread position:211-429
               
               
               Cow position:chr2:5755082-5755298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):101, 21

               
               
               Conread position:211-604
               
               
               Cow position:chr2:19328752-19328365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:256
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):176, 80

               
               
               Conread position:211-616
               
               
               Cow position:chr2:26851369-26850969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 17

               
               
               Conread position:211-625
               
               
               Cow position:chr2:59992028-59992441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:292
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):102, 149

               
               
               Conread position:211-627
               
               
               Cow position:chr2:37615168-37614740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:291
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):24, 155

               
               
               Conread position:212-561
               
               
               Cow position:chr2:12682436-12682799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:256
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):10, 150

               
               
               Conread position:212-613
               
               
               Cow position:chr2:63331598-63332003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:286
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):150, 28

               
               
               Conread position:212-632
               
               
               Cow position:chr2:41248786-41248359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 126

               
               
               Conread position:212-632
               
               
               Cow position:chr2:45784969-45784522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:300
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):87, 47

               
               
               Conread position:212-632
               
               
               Cow position:chr2:47090984-47090555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:296
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):114, 20

               
               
               Conread position:212-632
               
               
               Cow position:chr2:56937897-56937475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 48

               
               
               Conread position:213-405
               
               
               Cow position:chr2:56010938-56011126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):133, 18

               
               
               Conread position:213-580
               
               
               Cow position:chr2:46242362-46242745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:250
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):107, 134

               
               
               Conread position:213-629
               
               
               Cow position:chr2:42925492-42925097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:274
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):11, 81

               
               
               Conread position:213-630
               
               
               Cow position:chr2:44229491-44229897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):209, 15

               
               
               Conread position:213-632
               
               
               Cow position:chr2:38886423-38886862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 141

               
               
               Conread position:213-632
               
               
               Cow position:chr2:67480205-67479770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:299
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):78, 19

               
               
               Conread position:214-382
               
               
               Cow position:chr2:40508377-40508553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):105, 16

               
               
               Conread position:214-400
               
               
               Cow position:chr2:84343930-84344125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):103, 144

               
               
               Conread position:214-418
               
               
               Cow position:chr2:56102116-56102325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):107, 132

               
               
               Conread position:214-456
               
               
               Cow position:chr2:50433074-50432826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):23, 141

               
               
               Conread position:214-539
               
               
               Cow position:chr2:41040488-41040824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:225
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):13, 137

               
               
               Conread position:214-611
               
               
               Cow position:chr2:34749772-34750172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:260
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):17, 40

               
               
               Conread position:214-630
               
               
               Cow position:chr2:42970330-42969898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:296
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):20, 145

               
               
               Conread position:214-631
               
               
               Cow position:chr2:46188880-46189300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 18

               
               
               Conread position:214-631
               
               
               Cow position:chr2:46358045-46357637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:268
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):107, 47

               
               
               Conread position:214-631
               
               
               Cow position:chr2:54700672-54700238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 14

               
               
               Conread position:214-632
               
               
               Cow position:chr2:7194427-7193993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 66

               
               
               Conread position:214-632
               
               
               Cow position:chr2:19294809-19294392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 57

               
               
               Conread position:214-632
               
               
               Cow position:chr2:32431517-32431930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:289
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):7, 134

               
               
               Conread position:214-632
               
               
               Cow position:chr2:69579454-69579890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 141

               
               
               Conread position:214-633
               
               
               Cow position:chr2:23713094-23712681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:294
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):17, 136

               
               
               Conread position:214-645
               
               
               Cow position:chr2:71799859-71800313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:304
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):17, 149

               
               
               Conread position:215-325
               
               
               Cow position:chr2:67810823-67810933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:92
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:215-418
               
               
               Cow position:chr2:34492672-34492466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):16, 52

               
               
               Conread position:215-418
               
               
               Cow position:chr2:61181827-61181638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:215-423
               
               
               Cow position:chr2:67047638-67047422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):100, 135

               
               
               Conread position:215-428
               
               
               Cow position:chr2:6010193-6010401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):18, 50

               
               
               Conread position:215-567
               
               
               Cow position:chr2:58153920-58153561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:233
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):103, 233

               
               
               Conread position:215-571
               
               
               Cow position:chr2:24218000-24218363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:246
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):94, 124

               
               
               Conread position:215-617
               
               
               Cow position:chr2:25757411-25757826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:270
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):16, 144

               
               
               Conread position:215-621
               
               
               Cow position:chr2:18997933-18997527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 195

               
               
               Conread position:215-622
               
               
               Cow position:chr2:44931041-44931465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:287
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):83, 146

               
               
               Conread position:215-624
               
               
               Cow position:chr2:15298751-15298347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:289
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):108, 84

               
               
               Conread position:215-627
               
               
               Cow position:chr2:35181613-35181192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:273
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):143, 40

               
               
               Conread position:215-629
               
               
               Cow position:chr2:62743791-62744217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:275
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):22, 246

               
               
               Conread position:215-631
               
               
               Cow position:chr2:28820588-28820156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 148

               
               
               Conread position:215-632
               
               
               Cow position:chr2:24393476-24393898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:292
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):40, 17

               
               
               Conread position:215-632
               
               
               Cow position:chr2:36963733-36963324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:290
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):112, 13

               
               
               Conread position:215-632
               
               
               Cow position:chr2:45574792-45575205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:277
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):97, 143

               
               
               Conread position:215-632
               
               
               Cow position:chr2:46033553-46033122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:295
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):16, 55

               
               
               Conread position:215-632
               
               
               Cow position:chr2:46378892-46379295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:283
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):16, 56

               
               
               Conread position:216-324
               
               
               Cow position:chr2:56021532-56021422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:92
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:216-386
               
               
               Cow position:chr2:27599286-27599459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):101, 53

               
               
               Conread position:216-403
               
               
               Cow position:chr2:39371629-39371440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):15, 50

               
               
               Conread position:216-405
               
               
               Cow position:chr2:15400731-15400927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):20, 130

               
               
               Conread position:216-405
               
               
               Cow position:chr2:16668148-16667958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):87, 15

               
               
               Conread position:216-405
               
               
               Cow position:chr2:21950189-21949996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):22, 49

               
               
               Conread position:216-405
               
               
               Cow position:chr2:44215713-44215524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):103, 12

               
               
               Conread position:216-405
               
               
               Cow position:chr2:46521991-46521792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):110, 151

               
               
               Conread position:216-405
               
               
               Cow position:chr2:70449237-70449047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):70, 129

               
               
               Conread position:216-406
               
               
               Cow position:chr2:34570787-34570989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):100, 144

               
               
               Conread position:216-406
               
               
               Cow position:chr2:38683282-38683480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):57, 20

               
               
               Conread position:216-406
               
               
               Cow position:chr2:60084359-60084548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):18, 113

               
               
               Conread position:216-413
               
               
               Cow position:chr2:60091220-60091419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):108, 83

               
               
               Conread position:216-415
               
               
               Cow position:chr2:11435499-11435299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):105, 15

               
               
               Conread position:216-418
               
               
               Cow position:chr2:45567041-45567248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):17, 79

               
               
               Conread position:216-420
               
               
               Cow position:chr2:29394791-29395005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):89, 12

               
               
               Conread position:216-420
               
               
               Cow position:chr2:41423006-41422802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):21, 135

               
               
               Conread position:216-420
               
               
               Cow position:chr2:52379525-52379735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):90, 140

               
               
               Conread position:216-423
               
               
               Cow position:chr2:2031793-2032007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):82, 131

               
               
               Conread position:216-428
               
               
               Cow position:chr2:3931516-3931725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):105, 15

               
               
               Conread position:216-438
               
               
               Cow position:chr2:13013297-13013074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):15, 93

               
               
               Conread position:216-438
               
               
               Cow position:chr2:43990990-43990756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):15, 142

               
               
               Conread position:216-438
               
               
               Cow position:chr2:86490432-86490655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):103, 15

               
               
               Conread position:216-449
               
               
               Cow position:chr2:9725886-9726125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):138, 15

               
               
               Conread position:216-449
               
               
               Cow position:chr2:46162167-46161930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):97, 16

               
               
               Conread position:216-451
               
               
               Cow position:chr2:49430002-49430246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):105, 197

               
               
               Conread position:216-518
               
               
               Cow position:chr2:15348615-15348298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):15, 135

               
               
               Conread position:216-563
               
               
               Cow position:chr2:72003730-72004086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):16, 109

               
               
               Conread position:216-577
               
               
               Cow position:chr2:69199109-69199469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:256
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):99, 59

               
               
               Conread position:216-614
               
               
               Cow position:chr2:45478384-45478779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:279
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):22, 128

               
               
               Conread position:216-615
               
               
               Cow position:chr2:33250872-33251267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:277
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):103, 142

               
               
               Conread position:216-623
               
               
               Cow position:chr2:47152329-47152738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:277
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):93, 55

               
               
               Conread position:216-627
               
               
               Cow position:chr2:16839852-16839429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:279
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):100, 16

               
               
               Conread position:216-631
               
               
               Cow position:chr2:6039233-6038796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 383

               
               
               Conread position:216-631
               
               
               Cow position:chr2:33496982-33497412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:296
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):15, 148

               
               
               Conread position:216-632
               
               
               Cow position:chr2:14555557-14555960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:277
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):99, 71

               
               
               Conread position:216-632
               
               
               Cow position:chr2:27173579-27173158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 32

               
               
               Conread position:216-632
               
               
               Cow position:chr2:27359253-27358834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:280
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):91, 68

               
               
               Conread position:216-632
               
               
               Cow position:chr2:32264179-32264605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:299
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):103, 14

               
               
               Conread position:216-632
               
               
               Cow position:chr2:38658581-38658992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:276
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):198, 58

               
               
               Conread position:216-632
               
               
               Cow position:chr2:39566480-39566888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:293
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):67, 139

               
               
               Conread position:216-632
               
               
               Cow position:chr2:46245244-46245647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:277
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):23, 95

               
               
               Conread position:216-632
               
               
               Cow position:chr2:52332414-52332839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:286
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):15, 149

               
               
               Conread position:216-632
               
               
               Cow position:chr2:59180290-59179847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:292
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):15, 144

               
               
               Conread position:216-632
               
               
               Cow position:chr2:66403710-66404138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:283
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):15, 147

               
               
               Conread position:216-632
               
               
               Cow position:chr2:69250450-69250886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 143

               
               
               Conread position:216-632
               
               
               Cow position:chr2:80241965-80242401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:295
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):17, 77

               
               
               Conread position:216-632
               
               
               Cow position:chr2:85926285-85925851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:279
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):26, 253

               
               
               Conread position:216-635
               
               
               Cow position:chr2:38259237-38259669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:295
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):21, 54

               
               
               Conread position:216-635
               
               
               Cow position:chr2:44051523-44051091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 16

               
               
               Conread position:216-637
               
               
               Cow position:chr2:76562340-76561899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:314
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):19, 158

               
               
               Conread position:216-638
               
               
               Cow position:chr2:56350696-56351131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 136

               
               
               Conread position:217-402
               
               
               Cow position:chr2:64465565-64465752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):98, 32

               
               
               Conread position:217-403
               
               
               Cow position:chr2:36124648-36124456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:217-418
               
               
               Cow position:chr2:6311468-6311265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):20, 126

               
               
               Conread position:217-419
               
               
               Cow position:chr2:19017666-19017458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):102, 14

               
               
               Conread position:217-419
               
               
               Cow position:chr2:65830120-65830330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):11, 128

               
               
               Conread position:217-420
               
               
               Cow position:chr2:72342638-72342851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):69, 144

               
               
               Conread position:217-422
               
               
               Cow position:chr2:75462537-75462333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):90, 75

               
               
               Conread position:217-428
               
               
               Cow position:chr2:21327422-21327211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):52, 12

               
               
               Conread position:217-514
               
               
               Cow position:chr2:46614618-46614315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):30, 24

               
               
               Conread position:217-516
               
               
               Cow position:chr2:10628316-10628630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:223
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):14, 136

               
               
               Conread position:217-538
               
               
               Cow position:chr2:4016648-4016954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):104, 20

               
               
               Conread position:217-588
               
               
               Cow position:chr2:14218869-14218486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 142

               
               
               Conread position:217-623
               
               
               Cow position:chr2:36137227-36136807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:286
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):81, 143

               
               
               Conread position:217-624
               
               
               Cow position:chr2:29042111-29041681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:292
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):81, 24

               
               
               Conread position:217-627
               
               
               Cow position:chr2:81791351-81791781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:282
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):102, 52

               
               
               Conread position:217-628
               
               
               Cow position:chr2:49428600-49428183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 136

               
               
               Conread position:217-629
               
               
               Cow position:chr2:7533564-7533979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:287
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):9, 110

               
               
               Conread position:217-632
               
               
               Cow position:chr2:15058847-15059277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 132

               
               
               Conread position:217-632
               
               
               Cow position:chr2:32048694-32048279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:298
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):29, 50

               
               
               Conread position:217-632
               
               
               Cow position:chr2:57776567-57776139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:299
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):64, 144

               
               
               Conread position:217-633
               
               
               Cow position:chr2:13354898-13354465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 54

               
               
               Conread position:218-318
               
               
               Cow position:chr2:24116871-24116970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:84
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:218-326
               
               
               Cow position:chr2:72359417-72359525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:87
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:218-404
               
               
               Cow position:chr2:16067866-16068049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):16, 82

               
               
               Conread position:218-406
               
               
               Cow position:chr2:44620802-44620606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):100, 141

               
               
               Conread position:218-412
               
               
               Cow position:chr2:24569950-24570137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:218-413
               
               
               Cow position:chr2:24469174-24469366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):121, 13

               
               
               Conread position:218-418
               
               
               Cow position:chr2:12186845-12186639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):13, 36

               
               
               Conread position:218-420
               
               
               Cow position:chr2:15734635-15734422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):20, 143

               
               
               Conread position:218-420
               
               
               Cow position:chr2:37121468-37121270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):95, 12

               
               
               Conread position:218-429
               
               
               Cow position:chr2:1923668-1923887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):109, 145

               
               
               Conread position:218-438
               
               
               Cow position:chr2:4644483-4644255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):101, 51

               
               
               Conread position:218-438
               
               
               Cow position:chr2:14848063-14847850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):19, 102

               
               
               Conread position:218-438
               
               
               Cow position:chr2:16847398-16847168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):18, 10

               
               
               Conread position:218-487
               
               
               Cow position:chr2:68328638-68328914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):87, 130

               
               
               Conread position:218-554
               
               
               Cow position:chr2:48634838-48635174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):79, 57

               
               
               Conread position:218-567
               
               
               Cow position:chr2:32660394-32660030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:250
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):47, 12

               
               
               Conread position:218-601
               
               
               Cow position:chr2:12686573-12686965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:274
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):13, 141

               
               
               Conread position:218-615
               
               
               Cow position:chr2:29122099-29121694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:277
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):19, 128

               
               
               Conread position:218-625
               
               
               Cow position:chr2:192255-192665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:273
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):68, 39

               
               
               Conread position:218-629
               
               
               Cow position:chr2:41158172-41157760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:284
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):13, 47

               
               
               Conread position:218-631
               
               
               Cow position:chr2:17114528-17114944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 45

               
               
               Conread position:218-632
               
               
               Cow position:chr2:13580450-13580034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:293
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):50, 123

               
               
               Conread position:218-632
               
               
               Cow position:chr2:14826495-14826076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 198

               
               
               Conread position:218-632
               
               
               Cow position:chr2:37112990-37113408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:294
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):16, 48

               
               
               Conread position:218-632
               
               
               Cow position:chr2:38662483-38662885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:293
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):80, 10

               
               
               Conread position:218-632
               
               
               Cow position:chr2:41145537-41145101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:294
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):12, 148

               
               
               Conread position:218-632
               
               
               Cow position:chr2:46746148-46745713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:286
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):81, 168

               
               
               Conread position:218-632
               
               
               Cow position:chr2:65269479-65269907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:297
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):108, 10

               
               
               Conread position:218-645
               
               
               Cow position:chr2:55278371-55278822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 67

               
               
               Conread position:219-331
               
               
               Cow position:chr2:19191609-19191719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:91
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:219-425
               
               
               Cow position:chr2:3127860-3128076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):98, 143

               
               
               Conread position:219-539
               
               
               Cow position:chr2:19374173-19373868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):195, 75

               
               
               Conread position:219-562
               
               
               Cow position:chr2:19155973-19156324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:245
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):121, 240

               
               
               Conread position:219-571
               
               
               Cow position:chr2:54968223-54967858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:256
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):12, 130

               
               
               Conread position:219-600
               
               
               Cow position:chr2:46129953-46130327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:255
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):102, 58

               
               
               Conread position:219-612
               
               
               Cow position:chr2:17328957-17328560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 40

               
               
               Conread position:219-625
               
               
               Cow position:chr2:71621834-71622254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:276
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):7, 258

               
               
               Conread position:219-630
               
               
               Cow position:chr2:67595802-67596219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 142

               
               
               Conread position:219-632
               
               
               Cow position:chr2:19211846-19212253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 65

               
               
               Conread position:219-632
               
               
               Cow position:chr2:33553965-33554368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:269
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):164, 9

               
               
               Conread position:219-632
               
               
               Cow position:chr2:34695431-34695032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:274
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):8, 58

               
               
               Conread position:219-632
               
               
               Cow position:chr2:53650226-53649815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:272
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):111, 12

               
               
               Conread position:219-645
               
               
               Cow position:chr2:46312648-46312228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:305
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):96, 49

               
               
               Conread position:220-327
               
               
               Cow position:chr2:38954045-38953938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:87
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:220-385
               
               
               Cow position:chr2:16751664-16751838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):99, 140

               
               
               Conread position:220-445
               
               
               Cow position:chr2:19058364-19058130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):93, 117

               
               
               Conread position:220-624
               
               
               Cow position:chr2:70664211-70663812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:267
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):190, 79

               
               
               Conread position:220-627
               
               
               Cow position:chr2:47047540-47047957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:274
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):13, 145

               
               
               Conread position:220-631
               
               
               Cow position:chr2:16514067-16513644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 122

               
               
               Conread position:220-632
               
               
               Cow position:chr2:6160139-6160536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:268
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:220-632
               
               
               Cow position:chr2:6281812-6282224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:274
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):18, 8

               
               
               Conread position:220-632
               
               
               Cow position:chr2:22371745-22372156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:273
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):75, 9

               
               
               Conread position:220-632
               
               
               Cow position:chr2:41452445-41452019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:283
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):87, 229

               
               
               Conread position:220-632
               
               
               Cow position:chr2:42608274-42607862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 8

               
               
               Conread position:221-588
               
               
               Cow position:chr2:45565911-45565538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:270
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):92, 11

               
               
               Conread position:221-595
               
               
               Cow position:chr2:78249950-78249565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):99, 184

               
               
               Conread position:221-632
               
               
               Cow position:chr2:69581297-69581721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:279
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):13, 136

               
               
               Conread position:222-574
               
               
               Cow position:chr2:58135179-58135543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:243
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):103, 131

               
               
               Conread position:222-624
               
               
               Cow position:chr2:41019006-41019418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 67

               
               
               Conread position:222-632
               
               
               Cow position:chr2:777473-777905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:287
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):16, 121

               
               
               Conread position:222-632
               
               
               Cow position:chr2:44065773-44065382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):182, 15

               
               
               Conread position:224-406
               
               
               Cow position:chr2:69092947-69093129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):89, 45

               
               
               Conread position:224-420
               
               
               Cow position:chr2:38162592-38162793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):23, 131

               
               
               Conread position:224-624
               
               
               Cow position:chr2:45484754-45485171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:279
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):84, 135

               
               
               Conread position:224-632
               
               
               Cow position:chr2:17966835-17967242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:278
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):191, 8

               
               
               Conread position:224-632
               
               
               Cow position:chr2:31784135-31783735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:261
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):97, 8

               
               
               Conread position:224-632
               
               
               Cow position:chr2:43995137-43994725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 8

               
               
               Conread position:224-635
               
               
               Cow position:chr2:17940076-17940503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 136

               
               
               Conread position:225-405
               
               
               Cow position:chr2:12873614-12873432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):96, 116

               
               
               Conread position:225-632
               
               
               Cow position:chr2:38965815-38965411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:267
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):79, 7

               
               
               Conread position:225-645
               
               
               Cow position:chr2:74354115-74353673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:288
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):11, 197

               
               
               Conread position:226-632
               
               
               Cow position:chr2:2673736-2673313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:274
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):94, 216

               
               
               Conread position:226-632
               
               
               Cow position:chr2:21380196-21380612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 121

               
               
               Conread position:226-632
               
               
               Cow position:chr2:54654408-54654828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:272
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):84, 123

               
               
               Conread position:227-632
               
               
               Cow position:chr2:13684895-13684496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:272
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):153, 72

               
               
               Conread position:227-632
               
               
               Cow position:chr2:15250372-15249974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 71

               
               
               Conread position:228-402
               
               
               Cow position:chr2:65603435-65603612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):93, 115

               
               
               Conread position:228-409
               
               
               Cow position:chr2:44313511-44313700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):8, 123

               
               
               Conread position:228-412
               
               
               Cow position:chr2:32988775-32988580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):8, 123

               
               
               Conread position:228-539
               
               
               Cow position:chr2:39229012-39228692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):68, 117

               
               
               Conread position:228-541
               
               
               Cow position:chr2:387572-387892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):70, 235

               
               
               Conread position:228-562
               
               
               Cow position:chr2:33471792-33472124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:228
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):8, 87

               
               
               Conread position:228-585
               
               
               Cow position:chr2:65587361-65587003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:244
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):8, 120

               
               
               Conread position:228-604
               
               
               Cow position:chr2:26170952-26170562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:262
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):8, 134

               
               
               Conread position:228-617
               
               
               Cow position:chr2:26438523-26438923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:275
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):11, 65

               
               
               Conread position:228-628
               
               
               Cow position:chr2:78116155-78116548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:288
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):8, 124

               
               
               Conread position:228-629
               
               
               Cow position:chr2:4071106-4070708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:259
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):139, 23

               
               
               Conread position:228-631
               
               
               Cow position:chr2:23301933-23301539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:289
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):8, 21

               
               
               Conread position:228-631
               
               
               Cow position:chr2:78230015-78229611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:278
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):8, 125

               
               
               Conread position:228-632
               
               
               Cow position:chr2:1304156-1303740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:290
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):15, 41

               
               
               Conread position:228-632
               
               
               Cow position:chr2:5300802-5300378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 239

               
               
               Conread position:228-632
               
               
               Cow position:chr2:16594809-16594398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:290
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):8, 134

               
               
               Conread position:228-632
               
               
               Cow position:chr2:16633138-16632727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:288
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):8, 134

               
               
               Conread position:228-632
               
               
               Cow position:chr2:31355903-31355494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:292
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):99, 13

               
               
               Conread position:228-632
               
               
               Cow position:chr2:37009610-37009209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:268
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):89, 197

               
               
               Conread position:228-632
               
               
               Cow position:chr2:38205576-38205974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:272
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):175, 41

               
               
               Conread position:228-632
               
               
               Cow position:chr2:44482466-44482855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:271
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):10, 37

               
               
               Conread position:228-632
               
               
               Cow position:chr2:46331271-46330847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:273
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):10, 234

               
               
               Conread position:228-632
               
               
               Cow position:chr2:60462627-60463025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:278
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):72, 15

               
               
               Conread position:228-632
               
               
               Cow position:chr2:60468006-60468404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:280
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):72, 15

               
               
               Conread position:228-632
               
               
               Cow position:chr2:80116302-80115895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 228

               
               
               Conread position:228-635
               
               
               Cow position:chr2:33262425-33262829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:280
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):7, 34

               
               
               Conread position:228-645
               
               
               Cow position:chr2:841361-840937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:293
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):8, 136

               
               
               Conread position:228-645
               
               
               Cow position:chr2:52484761-52485203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:308
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):79, 41

               
               
               Conread position:228-645
               
               
               Cow position:chr2:55632975-55632553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 51

               
               
               Conread position:229-589
               
               
               Cow position:chr2:38785399-38785769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:251
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):149, 63

               
               
               Conread position:229-632
               
               
               Cow position:chr2:44986123-44986535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:280
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):96, 128

               
               
               Conread position:231-632
               
               
               Cow position:chr2:39514239-39513817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:280
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):89, 54

               
               
               Conread position:232-389
               
               
               Cow position:chr2:43139455-43139619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):75, 117

               
               
               Conread position:232-405
               
               
               Cow position:chr2:26574957-26574781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):61, 110

               
               
               Conread position:232-405
               
               
               Cow position:chr2:47784800-47784626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):73, 108

               
               
               Conread position:232-405
               
               
               Cow position:chr2:55004483-55004308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):89, 121

               
               
               Conread position:232-414
               
               
               Cow position:chr2:16109547-16109729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):64, 36

               
               
               Conread position:232-418
               
               
               Cow position:chr2:15872129-15871944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):75, 28

               
               
               Conread position:232-419
               
               
               Cow position:chr2:78379221-78379414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):80, 113

               
               
               Conread position:232-420
               
               
               Cow position:chr2:80848283-80848087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):75, 44

               
               
               Conread position:232-427
               
               
               Cow position:chr2:82374635-82374439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):100, 161

               
               
               Conread position:232-437
               
               
               Cow position:chr2:24530563-24530361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):74, 110

               
               
               Conread position:232-438
               
               
               Cow position:chr2:44198080-44197865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):75, 185

               
               
               Conread position:232-464
               
               
               Cow position:chr2:57733627-57733393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):88, 74

               
               
               Conread position:232-517
               
               
               Cow position:chr2:80177398-80177677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):152, 108

               
               
               Conread position:232-557
               
               
               Cow position:chr2:29290118-29290444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):87, 27

               
               
               Conread position:232-563
               
               
               Cow position:chr2:24594061-24593731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):75, 109

               
               
               Conread position:232-609
               
               
               Cow position:chr2:73544705-73545084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:250
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):92, 110

               
               
               Conread position:232-624
               
               
               Cow position:chr2:23270731-23271131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:261
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):56, 118

               
               
               Conread position:232-624
               
               
               Cow position:chr2:46344871-46344487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:272
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):176, 89

               
               
               Conread position:232-627
               
               
               Cow position:chr2:46120445-46120841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:266
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):81, 213

               
               
               Conread position:232-628
               
               
               Cow position:chr2:1709167-1708780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:258
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):91, 186

               
               
               Conread position:232-630
               
               
               Cow position:chr2:64323437-64323043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:269
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):67, 101

               
               
               Conread position:232-631
               
               
               Cow position:chr2:79761-80168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:277
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):80, 202

               
               
               Conread position:232-631
               
               
               Cow position:chr2:18857957-18858342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:274
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):152, 65

               
               
               Conread position:232-631
               
               
               Cow position:chr2:24271414-24271018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):182, 85

               
               
               Conread position:232-631
               
               
               Cow position:chr2:47990619-47990231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:271
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):200, 67

               
               
               Conread position:232-632
               
               
               Cow position:chr2:13001996-13001599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:265
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):50, 62

               
               
               Conread position:232-632
               
               
               Cow position:chr2:14709927-14710315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):311, 111

               
               
               Conread position:232-632
               
               
               Cow position:chr2:19494414-19494004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:274
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):89, 371

               
               
               Conread position:232-632
               
               
               Cow position:chr2:27178847-27178444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:287
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):87, 131

               
               
               Conread position:232-632
               
               
               Cow position:chr2:41915228-41915643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:289
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):75, 125

               
               
               Conread position:232-632
               
               
               Cow position:chr2:42183565-42183159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 119

               
               
               Conread position:232-632
               
               
               Cow position:chr2:45935768-45936164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:275
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):69, 47

               
               
               Conread position:232-632
               
               
               Cow position:chr2:46227665-46227257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:280
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):94, 49

               
               
               Conread position:232-632
               
               
               Cow position:chr2:48748549-48748934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:261
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):176, 29

               
               
               Conread position:232-632
               
               
               Cow position:chr2:51799138-51799530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:275
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):182, 75

               
               
               Conread position:232-632
               
               
               Cow position:chr2:71624198-71624588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:261
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):88, 160

               
               
               Conread position:232-632
               
               
               Cow position:chr2:75600910-75600502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:277
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):176, 72

               
               
               Conread position:232-632
               
               
               Cow position:chr2:76110592-76110186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 112

               
               
               Conread position:232-632
               
               
               Cow position:chr2:81348696-81349094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:278
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):127, 50

               
               
               Conread position:232-633
               
               
               Cow position:chr2:29801945-29802318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:261
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:232-633
               
               
               Cow position:chr2:47008140-47008553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:281
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):30, 64

               
               
               Conread position:232-633
               
               
               Cow position:chr2:73094605-73094994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:267
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):221, 79

               
               
               Conread position:232-645
               
               
               Cow position:chr2:20947568-20947150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:278
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):88, 206

               
               
               Conread position:232-645
               
               
               Cow position:chr2:26500739-26501162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 101

               
               
               Conread position:232-645
               
               
               Cow position:chr2:31749767-31750191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 115

               
               
               Conread position:232-645
               
               
               Cow position:chr2:36631151-36630747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:286
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):75, 121

               
               
               Conread position:232-645
               
               
               Cow position:chr2:39590455-39590033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:281
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):89, 230

               
               
               Conread position:232-645
               
               
               Cow position:chr2:45499003-45499419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:284
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):88, 225

               
               
               Conread position:232-645
               
               
               Cow position:chr2:64292529-64292922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:278
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):123, 50

               
               
               Conread position:232-645
               
               
               Cow position:chr2:68190447-68190859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:280
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):83, 31

               
               
               Conread position:232-645
               
               
               Cow position:chr2:82580736-82581153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:270
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):170, 84

               
               
               Conread position:232-645
               
               
               Cow position:chr2:84480300-84480742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:297
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):75, 182

               
               
               Conread position:233-389
               
               
               Cow position:chr2:64818-64970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):141, 73

               
               
               Conread position:233-528
               
               
               Cow position:chr2:21049136-21049420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):74, 158

               
               
               Conread position:233-629
               
               
               Cow position:chr2:24859203-24858796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:268
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):119, 61

               
               
               Conread position:233-632
               
               
               Cow position:chr2:21382650-21383066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 176

               
               
               Conread position:234-630
               
               
               Cow position:chr2:68970943-68970526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:282
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):97, 252

               
               
               Conread position:234-631
               
               
               Cow position:chr2:76313668-76314067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 115

               
               
               Conread position:234-632
               
               
               Cow position:chr2:13604649-13604256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:277
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):174, 64

               
               
               Conread position:235-528
               
               
               Cow position:chr2:50913818-50914116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):84, 113

               
               
               Conread position:235-632
               
               
               Cow position:chr2:37347981-37347591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:277
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):74, 119

               
               
               Conread position:235-643
               
               
               Cow position:chr2:56821193-56821621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:282
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):152, 62

               
               
               Conread position:236-405
               
               
               Cow position:chr2:28330555-28330726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):84, 112

               
               
               Conread position:236-414
               
               
               Cow position:chr2:9062876-9062687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):83, 114

               
               
               Conread position:236-535
               
               
               Cow position:chr2:45642297-45642602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):84, 29

               
               
               Conread position:236-547
               
               
               Cow position:chr2:30351508-30351827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:217
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):63, 113

               
               
               Conread position:236-626
               
               
               Cow position:chr2:24007612-24007221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:265
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):130, 35

               
               
               Conread position:236-628
               
               
               Cow position:chr2:80275097-80275497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 229

               
               
               Conread position:236-631
               
               
               Cow position:chr2:42801231-42800833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:271
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):71, 205

               
               
               Conread position:236-631
               
               
               Cow position:chr2:74249027-74249433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 125

               
               
               Conread position:236-632
               
               
               Cow position:chr2:15674725-15674337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:270
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):148, 63

               
               
               Conread position:236-632
               
               
               Cow position:chr2:26042062-26042448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:265
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):178, 51

               
               
               Conread position:236-632
               
               
               Cow position:chr2:32115258-32114856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:273
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):172, 28

               
               
               Conread position:236-632
               
               
               Cow position:chr2:35092511-35092898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:265
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):65, 85

               
               
               Conread position:236-632
               
               
               Cow position:chr2:42192620-42192235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:270
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):169, 51

               
               
               Conread position:236-632
               
               
               Cow position:chr2:51638729-51638338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:269
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):300, 82

               
               
               Conread position:236-665
               
               
               Cow position:chr2:21559-21980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:290
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):171, 49

               
               
               Conread position:237-622
               
               
               Cow position:chr2:65902220-65901817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:273
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):102, 110

               
               
               Conread position:241-523
               
               
               Cow position:chr2:38651697-38651417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):68, 99

               
               
               Conread position:241-632
               
               
               Cow position:chr2:22859460-22859848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:261
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):177, 58

               
               
               Conread position:242-505
               
               
               Cow position:chr2:70847073-70847344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):79, 104

               
               
               Conread position:242-624
               
               
               Cow position:chr2:71437187-71437585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:263
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):39, 222

               
               
               Conread position:242-632
               
               
               Cow position:chr2:15597293-15597679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:276
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):78, 17

               
               
               Conread position:242-632
               
               
               Cow position:chr2:44170747-44170347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 98

               
               
               Conread position:242-632
               
               
               Cow position:chr2:46202457-46202058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:281
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):67, 104

               
               
               Conread position:242-645
               
               
               Cow position:chr2:69419400-69419800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:274
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):79, 26

               
               
               Conread position:243-579
               
               
               Cow position:chr2:45542213-45542551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):70, 167

               
               
               Conread position:243-584
               
               
               Cow position:chr2:46119580-46119922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):78, 103

               
               
               Conread position:243-613
               
               
               Cow position:chr2:70495435-70495081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:257
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):173, 50

               
               
               Conread position:243-624
               
               
               Cow position:chr2:16505281-16505678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 23

               
               
               Conread position:243-632
               
               
               Cow position:chr2:1210583-1210977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:267
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):66, 18

               
               
               Conread position:243-632
               
               
               Cow position:chr2:25283302-25282898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 67

               
               
               Conread position:243-632
               
               
               Cow position:chr2:28710821-28711196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 16

               
               
               Conread position:243-632
               
               
               Cow position:chr2:50766660-50766279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:270
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):74, 21

               
               
               Conread position:244-630
               
               
               Cow position:chr2:50353076-50352657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:270
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):70, 45

               
               
               Conread position:244-645
               
               
               Cow position:chr2:46204707-46204286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:294
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):75, 115

               
               
               Conread position:245-456
               
               
               Cow position:chr2:63074677-63074887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):103, 53

               
               
               Conread position:245-624
               
               
               Cow position:chr2:73359924-73360312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:266
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):51, 205

               
               
               Conread position:246-416
               
               
               Cow position:chr2:16669656-16669476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):61, 103

               
               
               Conread position:246-558
               
               
               Cow position:chr2:65932154-65931829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):21, 113

               
               
               Conread position:246-567
               
               
               Cow position:chr2:16332235-16331927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):167, 74

               
               
               Conread position:246-573
               
               
               Cow position:chr2:45367465-45367144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:227
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):193, 33

               
               
               Conread position:246-589
               
               
               Cow position:chr2:83410684-83410344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:237
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):88, 20

               
               
               Conread position:246-631
               
               
               Cow position:chr2:37534803-37535198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:262
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):26, 177

               
               
               Conread position:246-631
               
               
               Cow position:chr2:72528148-72527744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:275
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):75, 103

               
               
               Conread position:246-632
               
               
               Cow position:chr2:16428216-16428610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:272
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):67, 101

               
               
               Conread position:246-632
               
               
               Cow position:chr2:38795586-38795971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:267
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):76, 106

               
               
               Conread position:246-632
               
               
               Cow position:chr2:39815110-39815496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 66

               
               
               Conread position:246-632
               
               
               Cow position:chr2:43835374-43835773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:277
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):67, 102

               
               
               Conread position:246-632
               
               
               Cow position:chr2:57939872-57939473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:268
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):40, 222

               
               
               Conread position:246-632
               
               
               Cow position:chr2:64212367-64212771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:269
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):57, 129

               
               
               Conread position:246-632
               
               
               Cow position:chr2:70539199-70539585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:266
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):80, 50

               
               
               Conread position:246-633
               
               
               Cow position:chr2:4383730-4384103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:258
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):162, 53

               
               
               Conread position:247-632
               
               
               Cow position:chr2:27337593-27337984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:272
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):51, 154

               
               
               Conread position:248-627
               
               
               Cow position:chr2:10319767-10320159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:264
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):78, 13

               
               
               Conread position:248-632
               
               
               Cow position:chr2:42255614-42255224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 97

               
               
               Conread position:248-632
               
               
               Cow position:chr2:77157163-77157563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:253
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):78, 92

               
               
               Conread position:249-612
               
               
               Cow position:chr2:1762973-1762600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):72, 11

               
               
               Conread position:250-632
               
               
               Cow position:chr2:69676346-69676744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:268
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):71, 104

               
               
               Conread position:250-635
               
               
               Cow position:chr2:29160090-29159690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 108

               
               
               Conread position:251-609
               
               
               Cow position:chr2:36575916-36575555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:256
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):68, 94

               
               
               Conread position:252-632
               
               
               Cow position:chr2:36105429-36105061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:261
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):149, 55

               
               
               Conread position:252-632
               
               
               Cow position:chr2:49608771-49608378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:266
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):74, 105

               
               
               Conread position:253-632
               
               
               Cow position:chr2:46051129-46051512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):88, 58

               
               
               Conread position:254-625
               
               
               Cow position:chr2:13582762-13582380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 95

               
               
               Conread position:254-632
               
               
               Cow position:chr2:50566115-50565717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 105

               
               
               Conread position:257-632
               
               
               Cow position:chr2:45535640-45535260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:253
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):64, 96

               
               
               Conread position:261-630
               
               
               Cow position:chr2:41185630-41185264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:247
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):153, 80

               
               
               Conread position:261-632
               
               
               Cow position:chr2:15329544-15329193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:247
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):148, 53

               
               
               Conread position:264-614
               
               
               Cow position:chr2:44550687-44551028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):68, 78

               
               
               Conread position:266-540
               
               
               Cow position:chr2:12558378-12558646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:190
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):160, 27

               
               
               Conread position:268-632
               
               
               Cow position:chr2:53430882-53430517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:262
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):75, 59

               
               
               Conread position:268-632
               
               
               Cow position:chr2:63273786-63274158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):45, 69

               
               
               Conread position:271-588
               
               
               Cow position:chr2:31460175-31460495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):52, 75

               
               
               Conread position:271-619
               
               
               Cow position:chr2:66480030-66480381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):46, 72

               
               
               Conread position:271-624
               
               
               Cow position:chr2:43790261-43789904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:243
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):42, 190

               
               
               Conread position:271-631
               
               
               Cow position:chr2:54971337-54970976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:230
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):28, 163

               
               
               Conread position:271-632
               
               
               Cow position:chr2:39501197-39500822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:245
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):50, 183

               
               
               Conread position:271-632
               
               
               Cow position:chr2:80903752-80904136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:260
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):56, 80

               
               
               Conread position:271-645
               
               
               Cow position:chr2:20900299-20900690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:276
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):31, 80

               
               
               Conread position:279-632
               
               
               Cow position:chr2:10655712-10656046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):135, 42

               
               
               Conread position:279-632
               
               
               Cow position:chr2:31500157-31499792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:251
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):20, 72

               
               
               Conread position:283-632
               
               
               Cow position:chr2:19286936-19287286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):10, 172

               
               
               Conread position:285-632
               
               
               Cow position:chr2:69747475-69747830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:229
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):10, 57

               
               
               Conread position:287-632
               
               
               Cow position:chr2:69823729-69823378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:241
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):17, 55

               
               
               Conread position:288-632
               
               
               Cow position:chr2:53851572-53851223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:231
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):96, 11

               
               
               Conread position:292-631
               
               
               Cow position:chr2:6697371-6697701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:223
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):206, 49

               
               
               Conread position:293-643
               
               
               Cow position:chr2:70704390-70704031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:238
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):90, 42

               
               
               Conread position:294-632
               
               
               Cow position:chr2:30642532-30642879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:239
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):111, 27

               
               
               Conread position:298-622
               
               
               Cow position:chr2:61421041-61421372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:224
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):110, 43

               
               
               Conread position:298-632
               
               
               Cow position:chr2:44191612-44191269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:236
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):20, 42

               
               
               Conread position:298-632
               
               
               Cow position:chr2:46909311-46909647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:233
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):60, 12

               
               
               Conread position:298-633
               
               
               Cow position:chr2:64533459-64533132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):116, 32

               
               
               Conread position:298-645
               
               
               Cow position:chr2:41710982-41710657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):15, 45

               
               
               Conread position:299-596
               
               
               Cow position:chr2:84970581-84970880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):17, 159

               
               
               Conread position:299-632
               
               
               Cow position:chr2:40402901-40403230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:221
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):116, 42

               
               
               Conread position:299-632
               
               
               Cow position:chr2:46948764-46949096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):85, 69

               
               
               Conread position:299-632
               
               
               Cow position:chr2:47115795-47116122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:217
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):84, 12

               
               
               Conread position:299-632
               
               
               Cow position:chr2:73353918-73353581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:236
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):127, 42

               
               
               Conread position:299-632
               
               
               Cow position:chr2:85339331-85339670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:225
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):101, 153

               
               
               Conread position:299-645
               
               
               Cow position:chr2:30817093-30816734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:251
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):74, 14

               
               
               Conread position:300-632
               
               
               Cow position:chr2:43596025-43596380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:241
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):14, 112

               
               
               Conread position:300-632
               
               
               Cow position:chr2:45666157-45665822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):114, 30

               
               
               Conread position:300-632
               
               
               Cow position:chr2:46293920-46294246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):114, 108

               
               
               Conread position:304-646
               
               
               Cow position:chr2:17444918-17444571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):104, 17

               
               
               Conread position:305-592
               
               
               Cow position:chr2:47056031-47055738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):15, 40

               
               
               Conread position:306-631
               
               
               Cow position:chr2:41461488-41461155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):103, 35

               
               
               Conread position:306-645
               
               
               Cow position:chr2:61485742-61485413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:239
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):133, 35

               
               
               Conread position:309-631
               
               
               Cow position:chr2:50278136-50277812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:228
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):96, 17

               
               
               Conread position:309-632
               
               
               Cow position:chr2:39489889-39489575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:213
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):99, 11

               
               
               Conread position:310-650
               
               
               Cow position:chr2:48361687-48361340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:230
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):98, 10

               
               
               Conread position:311-574
               
               
               Cow position:chr2:69367013-69367282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):35, 10

               
               
               Conread position:312-632
               
               
               Cow position:chr2:53532697-53533016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):8, 144

               
               
               Conread position:319-599
               
               
               Cow position:chr2:24434173-24434453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):5, 29

               
               
               Conread position:319-614
               
               
               Cow position:chr2:549223-549517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:205
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):103, 84

               
               
               Conread position:319-621
               
               
               Cow position:chr2:1638710-1638400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):95, 68

               
               
               Conread position:319-631
               
               
               Cow position:chr2:50580469-50580160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:223
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):177, 22

               
               
               Conread position:319-632
               
               
               Cow position:chr2:25597389-25597699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):120, 22

               
               
               Conread position:319-632
               
               
               Cow position:chr2:42927344-42927660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):134, 40

               
               
               Conread position:319-635
               
               
               Cow position:chr2:32416753-32417072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):81, 134

               
               
               Conread position:319-645
               
               
               Cow position:chr2:41185165-41184844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):82, 142

               
               
               Conread position:320-632
               
               
               Cow position:chr2:41954991-41954667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):17, 13

               
               
               Conread position:320-632
               
               
               Cow position:chr2:80963544-80963854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 77

               
               
               Conread position:320-632
               
               
               Cow position:chr2:81927953-81927646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:223
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):14, 22

               
               
               Conread position:320-641
               
               
               Cow position:chr2:44232347-44232672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:232
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):12, 22

               
               
               Conread position:320-645
               
               
               Cow position:chr2:36436312-36435979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):85, 29

               
               
               Conread position:320-645
               
               
               Cow position:chr2:38273655-38273321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:231
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):88, 21

               
               
               Conread position:320-645
               
               
               Cow position:chr2:44081542-44081227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):83, 47

               
               
               Conread position:320-645
               
               
               Cow position:chr2:47073293-47072970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:231
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):17, 13

               
               
               Conread position:321-610
               
               
               Cow position:chr2:45912527-45912818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):63, 138

               
               
               Conread position:321-619
               
               
               Cow position:chr2:5130350-5130645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:220
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):87, 46

               
               
               Conread position:321-630
               
               
               Cow position:chr2:70896139-70895823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):87, 139

               
               
               Conread position:321-632
               
               
               Cow position:chr2:28303423-28303117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):82, 20

               
               
               Conread position:321-632
               
               
               Cow position:chr2:39564458-39564144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):87, 49

               
               
               Conread position:321-645
               
               
               Cow position:chr2:47808836-47808507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:235
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):97, 12

               
               
               Conread position:322-645
               
               
               Cow position:chr2:39584553-39584228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:228
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):61, 95

               
               
               Conread position:323-551
               
               
               Cow position:chr2:17409905-17410133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):82, 26

               
               
               Conread position:323-612
               
               
               Cow position:chr2:62644694-62644405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):40, 18

               
               
               Conread position:323-623
               
               
               Cow position:chr2:14854407-14854115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:213
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):177, 26

               
               
               Conread position:323-629
               
               
               Cow position:chr2:26102869-26102574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:210
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):91, 18

               
               
               Conread position:323-629
               
               
               Cow position:chr2:26806015-26806320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):153, 18

               
               
               Conread position:323-629
               
               
               Cow position:chr2:43123441-43123114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:226
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):92, 18

               
               
               Conread position:323-630
               
               
               Cow position:chr2:32402867-32403170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):91, 18

               
               
               Conread position:323-631
               
               
               Cow position:chr2:39263589-39263280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:220
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):99, 18

               
               
               Conread position:323-631
               
               
               Cow position:chr2:56846849-56846544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):81, 26

               
               
               Conread position:323-631
               
               
               Cow position:chr2:70674827-70674524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:222
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):93, 18

               
               
               Conread position:323-631
               
               
               Cow position:chr2:81388792-81388482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):93, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr2:7524030-7524350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:230
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):83, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr2:9687468-9687785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):36, 26

               
               
               Conread position:323-632
               
               
               Cow position:chr2:36017312-36017623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):135, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr2:42384506-42384195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:213
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):162, 26

               
               
               Conread position:323-632
               
               
               Cow position:chr2:79404193-79403891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:216
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):59, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr2:82262274-82262588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:224
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):85, 28

               
               
               Conread position:324-617
               
               
               Cow position:chr2:54789875-54789575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):78, 17

               
               
               Conread position:324-624
               
               
               Cow position:chr2:7383587-7383882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):91, 17

               
               
               Conread position:325-633
               
               
               Cow position:chr2:46230663-46230977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):89, 24

               
               
               Conread position:326-632
               
               
               Cow position:chr2:28653436-28653740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):20, 24

               
               
               Conread position:327-632
               
               
               Cow position:chr2:37072896-37072604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):7, 15

               
               
               Conread position:329-637
               
               
               Cow position:chr2:18061531-18061843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):79, 106

               
               
               Conread position:332-632
               
               
               Cow position:chr2:988780-988481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):81, 59

               
               
               Conread position:333-622
               
               
               Cow position:chr2:9325091-9324794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):75, 8

               
               
               Conread position:335-632
               
               
               Cow position:chr2:16564767-16564474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):166, 8

               
               
               Conread position:335-645
               
               
               Cow position:chr2:52344842-52344539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):79, 72

               
               
               Conread position:340-631
               
               
               Cow position:chr2:11697212-11696922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):68, 47

               
               
               Conread position:340-632
               
               
               Cow position:chr2:50400500-50400211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):158, 28

               
               
               Conread position:342-632
               
               
               Cow position:chr2:12237163-12237448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:197
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):67, 71

               
               
               Conread position:349-625
               
               
               Cow position:chr2:30955762-30956041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):60, 95

               
               
               Conread position:351-631
               
               
               Cow position:chr2:21416372-21416105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):63, 40

               
               
               Conread position:351-632
               
               
               Cow position:chr2:39281270-39280983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:194
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):54, 108

               
               
               Conread position:351-645
               
               
               Cow position:chr2:5999022-5998724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):54, 111

               
               
               Conread position:355-621
               
               
               Cow position:chr2:3308958-3309227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):62, 5

               
               
               Conread position:356-632
               
               
               Cow position:chr2:5297807-5297530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):60, 51

               
               
               Conread position:356-632
               
               
               Cow position:chr2:42936139-42936422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):52, 106

               
               
               Conread position:357-626
               
               
               Cow position:chr2:82019058-82019326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):51, 95

               
               
               Conread position:358-632
               
               
               Cow position:chr2:2589883-2590155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):42, 12

               
               
               Conread position:359-632
               
               
               Cow position:chr2:39855859-39855579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:192
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):49, 109

               
               
               Conread position:359-645
               
               
               Cow position:chr2:57393225-57393520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):42, 100

               
               
               Conread position:360-631
               
               
               Cow position:chr2:1756106-1755826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):45, 11

               
               
               Conread position:360-631
               
               
               Cow position:chr2:4223202-4223474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):54, 49

               
               
               Conread position:361-599
               
               
               Cow position:chr2:70781155-70780920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:165
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):137, 95

               
               
               Conread position:361-624
               
               
               Cow position:chr2:4655033-4655301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):43, 71

               
               
               Conread position:363-632
               
               
               Cow position:chr2:36878155-36878427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):51, 44

               
               
               Conread position:365-632
               
               
               Cow position:chr2:39662766-39662489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):42, 206

               
               
               Conread position:366-624
               
               
               Cow position:chr2:21764337-21764602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):29, 103

               
               
               Conread position:366-632
               
               
               Cow position:chr2:34535097-34535367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):37, 83

               
               
               Conread position:366-632
               
               
               Cow position:chr2:40691542-40691278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):41, 46

               
               
               Conread position:366-632
               
               
               Cow position:chr2:47097883-47098143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):234, 66

               
               
               Conread position:366-632
               
               
               Cow position:chr2:51594825-51594556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):40, 90

               
               
               Conread position:366-634
               
               
               Cow position:chr2:67313629-67313891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):42, 91

               
               
               Conread position:368-633
               
               
               Cow position:chr2:30113080-30112802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:369-631
               
               
               Cow position:chr2:50445959-50445686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):31, 86

               
               
               Conread position:369-632
               
               
               Cow position:chr2:61974854-61974586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):34, 80

               
               
               Conread position:370-632
               
               
               Cow position:chr2:11617151-11616890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):44, 37

               
               
               Conread position:373-645
               
               
               Cow position:chr2:46243965-46244248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):35, 59

               
               
               Conread position:374-632
               
               
               Cow position:chr2:77241917-77241649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):34, 231

               
               
               Conread position:375-631
               
               
               Cow position:chr2:69238330-69238065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):30, 87

               
               
               Conread position:378-613
               
               
               Cow position:chr2:76122413-76122654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):26, 16

               
               
               Conread position:379-632
               
               
               Cow position:chr2:28118548-28118292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):29, 169

               
               
               Conread position:382-631
               
               
               Cow position:chr2:23493576-23493325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):116, 17

               
               
               Conread position:382-632
               
               
               Cow position:chr2:10867849-10868101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):38, 77

               
               
               Conread position:383-628
               
               
               Cow position:chr2:23847782-23848026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):23, 79

               
               
               Conread position:384-632
               
               
               Cow position:chr2:46194837-46194586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):21, 68

               
               
               Conread position:393-632
               
               
               Cow position:chr2:68716639-68716878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):108, 58

               
               
               Conread position:394-632
               
               
               Cow position:chr2:15815614-15815381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):80, 32

               
               
               Conread position:394-632
               
               
               Cow position:chr2:45470039-45469795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:186
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):11, 47

               
               
               Conread position:396-632
               
               
               Cow position:chr2:55387573-55387339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):18, 11

               
               
               Conread position:399-629
               
               
               Cow position:chr2:305823-306054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):10, 52

               
               
               Conread position:399-630
               
               
               Cow position:chr2:80839103-80839338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:163
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):23, 92

               
               
               Conread position:400-632
               
               
               Cow position:chr2:51824946-51824718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):98, 12

               
               
               Conread position:400-632
               
               
               Cow position:chr2:66614886-66615128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):14, 7

               
               
               Conread position:405-645
               
               
               Cow position:chr2:12186038-12185804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):89, 13

               
               
               Conread position:410-631
               
               
               Cow position:chr2:45311105-45311335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:411-631
               
               
               Cow position:chr2:24469646-24469865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):62, 162

               
               
               Conread position:411-632
               
               
               Cow position:chr2:13467710-13467489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):41, 48

               
               
               Conread position:411-632
               
               
               Cow position:chr2:20940451-20940230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):132, 40

               
               
               Conread position:411-632
               
               
               Cow position:chr2:21407934-21407711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):34, 45

               
               
               Conread position:411-632
               
               
               Cow position:chr2:39384863-39385073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):77, 43

               
               
               Conread position:411-632
               
               
               Cow position:chr2:46020916-46020696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):86, 40

               
               
               Conread position:411-632
               
               
               Cow position:chr2:46184254-46184483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):89, 56

               
               
               Conread position:411-632
               
               
               Cow position:chr2:55480227-55480447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):126, 74

               
               
               Conread position:411-632
               
               
               Cow position:chr2:69770516-69770294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):87, 44

               
               
               Conread position:412-620
               
               
               Cow position:chr2:37424086-37424304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):75, 46

               
               
               Conread position:412-632
               
               
               Cow position:chr2:4273256-4273474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):34, 41

               
               
               Conread position:415-632
               
               
               Cow position:chr2:1134381-1134603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):82, 43

               
               
               Conread position:431-633
               
               
               Cow position:chr2:36007587-36007792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):8, 181

               
               
               Conread position:432-626
               
               
               Cow position:chr2:50777761-50777572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:440-629
               
               
               Cow position:chr2:29269044-29268855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):13, 19

               
               
               Conread position:440-632
               
               
               Cow position:chr2:41525740-41525931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):103, 13

               
               
               Conread position:441-632
               
               
               Cow position:chr2:28318872-28319061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):57, 21

               
               
               Conread position:441-632
               
               
               Cow position:chr2:45259098-45259286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):14, 134

               
               
               Conread position:442-629
               
               
               Cow position:chr2:47066597-47066785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):142, 21

               
               
               Conread position:443-632
               
               
               Cow position:chr2:42599913-42599719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):10, 21

               
               
               Conread position:445-632
               
               
               Cow position:chr2:85930438-85930249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):138, 0

               
               
               Conread position:447-632
               
               
               Cow position:chr2:818562-818372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):42, 8

               
               
               Conread position:447-632
               
               
               Cow position:chr2:25964510-25964694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):50, 110

               
               
               Conread position:451-645
               
               
               Cow position:chr2:41950005-41949801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:452-632
               
               
               Cow position:chr2:14884259-14884075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:452-632
               
               
               Cow position:chr2:70746772-70746589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):19, 168

               
               
               Conread position:454-644
               
               
               Cow position:chr2:34643396-34643214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):64, 19

               
               
               Conread position:455-632
               
               
               Cow position:chr2:40492343-40492160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:458-630
               
               
               Cow position:chr2:82647853-82648027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:458-632
               
               
               Cow position:chr2:21355884-21356063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):39, 18

               
               
               Conread position:458-632
               
               
               Cow position:chr2:45554282-45554108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):40, 131

               
               
               Conread position:458-632
               
               
               Cow position:chr2:65603962-65604137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):82, 61

               
               
               Conread position:458-632
               
               
               Cow position:chr2:80797636-80797466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:458-645
               
               
               Cow position:chr2:15571563-15571749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):92, 27

               
               
               Conread position:458-650
               
               
               Cow position:chr2:27600575-27600772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:459-632
               
               
               Cow position:chr2:46170908-46171084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):39, 62

               
               
               Conread position:460-636
               
               
               Cow position:chr2:71163749-71163924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):34, 136

               
               
               Conread position:461-631
               
               
               Cow position:chr2:1435296-1435131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):123, 37

               
               
               Conread position:463-632
               
               
               Cow position:chr2:24709380-24709553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:463-632
               
               
               Cow position:chr2:56102502-56102679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):31, 17

               
               
               Conread position:465-645
               
               
               Cow position:chr2:36468321-36468137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:104
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:470-617
               
               
               Cow position:chr2:41443360-41443211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):28, 47

               
               
               Conread position:470-628
               
               
               Cow position:chr2:61187173-61187328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):73, 101

               
               
               Conread position:470-630
               
               
               Cow position:chr2:27076668-27076509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):28, 63

               
               
               Conread position:470-631
               
               
               Cow position:chr2:25283770-25283602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:470-631
               
               
               Cow position:chr2:25285514-25285346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:470-632
               
               
               Cow position:chr2:9591887-9591720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):26, 10

               
               
               Conread position:470-632
               
               
               Cow position:chr2:62978717-62978874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:470-632
               
               
               Cow position:chr2:73985061-73985230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:470-632
               
               
               Cow position:chr2:74031028-74031197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:470-633
               
               
               Cow position:chr2:56002969-56002804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):73, 87

               
               
               Conread position:470-645
               
               
               Cow position:chr2:46734412-46734235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:471-623
               
               
               Cow position:chr2:64473683-64473835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):18, 101

               
               
               Conread position:471-629
               
               
               Cow position:chr2:12979059-12979228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:471-645
               
               
               Cow position:chr2:68084468-68084292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):68, 46

               
               
               Conread position:473-631
               
               
               Cow position:chr2:85246376-85246539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:475-602
               
               
               Cow position:chr2:44553157-44553284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:101
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):61, 91

               
               
               Conread position:476-618
               
               
               Cow position:chr2:17493370-17493518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:476-632
               
               
               Cow position:chr2:24722497-24722651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):23, 103

               
               
               Conread position:476-632
               
               
               Cow position:chr2:26157762-26157922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:476-632
               
               
               Cow position:chr2:26555638-26555796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):24, 68

               
               
               Conread position:476-633
               
               
               Cow position:chr2:6884173-6884016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):22, 109

               
               
               Conread position:476-633
               
               
               Cow position:chr2:40882026-40881875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):24, 90

               
               
               Conread position:477-629
               
               
               Cow position:chr2:77359430-77359282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):21, 66

               
               
               Conread position:480-631
               
               
               Cow position:chr2:28637341-28637491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):65, 34

               
               
               Conread position:481-630
               
               
               Cow position:chr2:53575048-53574900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):17, 104

               
               
               Conread position:481-632
               
               
               Cow position:chr2:36318431-36318592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:481-633
               
               
               Cow position:chr2:62685580-62685426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:481-645
               
               
               Cow position:chr2:68660736-68660569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:490-632
               
               
               Cow position:chr2:6313919-6314063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):93, 32

               
               
               Conread position:492-632
               
               
               Cow position:chr2:8295759-8295625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):53, 22

               
               
               Conread position:493-631
               
               
               Cow position:chr2:31529442-31529304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:493-632
               
               
               Cow position:chr2:2689097-2688963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:493-632
               
               
               Cow position:chr2:46262377-46262235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):90, 36

               
               
               Conread position:493-632
               
               
               Cow position:chr2:68488075-68488218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:493-645
               
               
               Cow position:chr2:9173335-9173482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):23, 49

               
               
               Conread position:494-631
               
               
               Cow position:chr2:19597726-19597585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:495-622
               
               
               Cow position:chr2:30586539-30586410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):91, 35

               
               
               Conread position:495-628
               
               
               Cow position:chr2:16422482-16422346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):91, 75

               
               
               Conread position:495-628
               
               
               Cow position:chr2:48617910-48617773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:495-628
               
               
               Cow position:chr2:52385989-52386126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):48, 64

               
               
               Conread position:495-629
               
               
               Cow position:chr2:4254606-4254742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):88, 57

               
               
               Conread position:495-630
               
               
               Cow position:chr2:48864053-48864188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):89, 47

               
               
               Conread position:495-630
               
               
               Cow position:chr2:60956301-60956166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):30, 48

               
               
               Conread position:495-631
               
               
               Cow position:chr2:6232541-6232409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):48, 69

               
               
               Conread position:495-631
               
               
               Cow position:chr2:42226341-42226479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):87, 37

               
               
               Conread position:495-631
               
               
               Cow position:chr2:46994827-46994963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:495-631
               
               
               Cow position:chr2:76969245-76969385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr2:1203613-1203472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr2:11806251-11806109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr2:39068234-39068096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr2:44032612-44032739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:111
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr2:46375003-46375139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):67, 11

               
               
               Conread position:495-632
               
               
               Cow position:chr2:47119556-47119416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:110
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr2:48069470-48069611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr2:74260384-74260249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:495-645
               
               
               Cow position:chr2:39941418-39941264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:497-631
               
               
               Cow position:chr2:6539309-6539447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:108
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:497-632
               
               
               Cow position:chr2:38628833-38628698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:102
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:498-632
               
               
               Cow position:chr2:47138766-47138628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:501-631
               
               
               Cow position:chr2:20855905-20856031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):42, 87

               
               
               Conread position:501-632
               
               
               Cow position:chr2:42938377-42938510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:107
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):85, 54

               
               
               Conread position:502-632
               
               
               Cow position:chr2:73466592-73466723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):34, 56

               
               
               Conread position:503-632
               
               
               Cow position:chr2:16387604-16387476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:100
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:503-632
               
               
               Cow position:chr2:42872191-42872058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:503-632
               
               
               Cow position:chr2:80177841-80177972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:504-645
               
               
               Cow position:chr2:47877894-47877757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:507-632
               
               
               Cow position:chr2:16412287-16412163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:99
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:509-631
               
               
               Cow position:chr2:39663315-39663187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:104
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:510-631
               
               
               Cow position:chr2:36055885-36056005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:95
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:515-632
               
               
               Cow position:chr2:68109835-68109952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:517-632
               
               
               Cow position:chr2:30910333-30910214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:96
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:523-632
               
               
               Cow position:chr2:46153311-46153417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:90
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:197-325
               
               
               Cow position:chr20:11909406-11909535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):32, 57

               
               
               Conread position:197-554
               
               
               Cow position:chr20:20124758-20125125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):130, 31

               
               
               Conread position:201-632
               
               
               Cow position:chr20:17251994-17251541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 151

               
               
               Conread position:202-633
               
               
               Cow position:chr20:20984269-20983839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:298
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):113, 151

               
               
               Conread position:204-514
               
               
               Cow position:chr20:39016598-39016925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):32, 156

               
               
               Conread position:206-372
               
               
               Cow position:chr20:21169500-21169666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):15, 101

               
               
               Conread position:206-419
               
               
               Cow position:chr20:33076551-33076774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):23, 139

               
               
               Conread position:209-550
               
               
               Cow position:chr20:36741728-36741391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:244
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):15, 46

               
               
               Conread position:209-632
               
               
               Cow position:chr20:10209069-10208635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:292
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):111, 19

               
               
               Conread position:210-326
               
               
               Cow position:chr20:26054960-26055076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:90
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:210-632
               
               
               Cow position:chr20:4206221-4205796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:293
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):110, 53

               
               
               Conread position:210-645
               
               
               Cow position:chr20:4944989-4945425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 18

               
               
               Conread position:211-632
               
               
               Cow position:chr20:21929156-21928737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 41

               
               
               Conread position:211-632
               
               
               Cow position:chr20:33434895-33435336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 79

               
               
               Conread position:212-548
               
               
               Cow position:chr20:23540909-23541240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):189, 53

               
               
               Conread position:212-624
               
               
               Cow position:chr20:7658962-7659374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 117

               
               
               Conread position:213-537
               
               
               Cow position:chr20:28818678-28819002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):149, 15

               
               
               Conread position:213-632
               
               
               Cow position:chr20:14980244-14980682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 340

               
               
               Conread position:214-418
               
               
               Cow position:chr20:31148410-31148207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):174, 22

               
               
               Conread position:214-550
               
               
               Cow position:chr20:5645038-5644702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):19, 94

               
               
               Conread position:214-633
               
               
               Cow position:chr20:31739955-31740386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:293
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):22, 44

               
               
               Conread position:215-631
               
               
               Cow position:chr20:19328660-19328233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:306
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):16, 146

               
               
               Conread position:215-632
               
               
               Cow position:chr20:5814826-5814401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:297
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):16, 38

               
               
               Conread position:215-632
               
               
               Cow position:chr20:11741055-11741471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 85

               
               
               Conread position:215-632
               
               
               Cow position:chr20:13829519-13829097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:289
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):102, 48

               
               
               Conread position:215-632
               
               
               Cow position:chr20:23846407-23846839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 17

               
               
               Conread position:215-633
               
               
               Cow position:chr20:34251408-34251846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 146

               
               
               Conread position:215-662
               
               
               Cow position:chr20:747191-746752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:308
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):22, 13

               
               
               Conread position:216-382
               
               
               Cow position:chr20:13023242-13023416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):15, 133

               
               
               Conread position:216-405
               
               
               Cow position:chr20:4891861-4892056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):100, 16

               
               
               Conread position:216-406
               
               
               Cow position:chr20:21018680-21018486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):93, 127

               
               
               Conread position:216-420
               
               
               Cow position:chr20:25953526-25953310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):19, 132

               
               
               Conread position:216-420
               
               
               Cow position:chr20:27315234-27315028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):105, 129

               
               
               Conread position:216-420
               
               
               Cow position:chr20:32636074-32636281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):20, 127

               
               
               Conread position:216-421
               
               
               Cow position:chr20:37273253-37273043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):22, 128

               
               
               Conread position:216-437
               
               
               Cow position:chr20:37919121-37919343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):114, 16

               
               
               Conread position:216-438
               
               
               Cow position:chr20:14490503-14490276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):15, 42

               
               
               Conread position:216-607
               
               
               Cow position:chr20:14433161-14433570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 133

               
               
               Conread position:216-615
               
               
               Cow position:chr20:36011052-36010639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:274
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):15, 53

               
               
               Conread position:216-627
               
               
               Cow position:chr20:28982956-28982535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:264
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):98, 166

               
               
               Conread position:216-632
               
               
               Cow position:chr20:3141835-3141416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 49

               
               
               Conread position:216-632
               
               
               Cow position:chr20:10913081-10913502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:289
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):15, 81

               
               
               Conread position:216-632
               
               
               Cow position:chr20:22235557-22235148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 82

               
               
               Conread position:216-632
               
               
               Cow position:chr20:34108347-34107949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:278
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):198, 90

               
               
               Conread position:216-632
               
               
               Cow position:chr20:35146273-35145842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 90

               
               
               Conread position:216-632
               
               
               Cow position:chr20:36779461-36779898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 144

               
               
               Conread position:216-633
               
               
               Cow position:chr20:32847600-32847185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:284
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):31, 14

               
               
               Conread position:216-637
               
               
               Cow position:chr20:34097688-34098129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 147

               
               
               Conread position:216-637
               
               
               Cow position:chr20:38818248-38817839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:270
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):22, 88

               
               
               Conread position:217-390
               
               
               Cow position:chr20:20202479-20202297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):9, 133

               
               
               Conread position:217-404
               
               
               Cow position:chr20:23549014-23548818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):101, 143

               
               
               Conread position:217-406
               
               
               Cow position:chr20:600557-600368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):20, 86

               
               
               Conread position:217-420
               
               
               Cow position:chr20:24883104-24883319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):102, 15

               
               
               Conread position:217-427
               
               
               Cow position:chr20:37609881-37609664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):17, 143

               
               
               Conread position:217-451
               
               
               Cow position:chr20:11002661-11002416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):100, 143

               
               
               Conread position:217-539
               
               
               Cow position:chr20:11548471-11548796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):97, 135

               
               
               Conread position:217-539
               
               
               Cow position:chr20:20926370-20926695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):100, 25

               
               
               Conread position:217-552
               
               
               Cow position:chr20:11135493-11135844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):17, 240

               
               
               Conread position:217-612
               
               
               Cow position:chr20:41089533-41089941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:276
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):11, 136

               
               
               Conread position:217-629
               
               
               Cow position:chr20:13652122-13652521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:290
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):104, 47

               
               
               Conread position:217-632
               
               
               Cow position:chr20:8556017-8556441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:289
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):98, 11

               
               
               Conread position:217-632
               
               
               Cow position:chr20:16935049-16935470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:283
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):31, 142

               
               
               Conread position:217-632
               
               
               Cow position:chr20:26996791-26996363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:283
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):97, 140

               
               
               Conread position:218-325
               
               
               Cow position:chr20:5268584-5268692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:87
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:218-326
               
               
               Cow position:chr20:35310586-35310478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:86
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:218-406
               
               
               Cow position:chr20:34393360-34393551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):132, 34

               
               
               Conread position:218-416
               
               
               Cow position:chr20:31845035-31845235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):103, 10

               
               
               Conread position:218-620
               
               
               Cow position:chr20:34221737-34221319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 14

               
               
               Conread position:218-623
               
               
               Cow position:chr20:8547314-8546915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:264
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):91, 14

               
               
               Conread position:218-627
               
               
               Cow position:chr20:35888502-35888933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:292
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):19, 143

               
               
               Conread position:218-629
               
               
               Cow position:chr20:4755577-4755989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:298
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):19, 138

               
               
               Conread position:218-630
               
               
               Cow position:chr20:28296557-28296125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:290
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):13, 132

               
               
               Conread position:218-631
               
               
               Cow position:chr20:21019811-21019399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:286
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):106, 10

               
               
               Conread position:218-632
               
               
               Cow position:chr20:1139509-1139940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 142

               
               
               Conread position:218-632
               
               
               Cow position:chr20:3739749-3740167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:278
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):13, 112

               
               
               Conread position:218-632
               
               
               Cow position:chr20:14807138-14806719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 14

               
               
               Conread position:218-632
               
               
               Cow position:chr20:38872746-38873179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:289
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):108, 13

               
               
               Conread position:219-387
               
               
               Cow position:chr20:41313635-41313468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):101, 119

               
               
               Conread position:219-406
               
               
               Cow position:chr20:14755588-14755778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):94, 123

               
               
               Conread position:219-609
               
               
               Cow position:chr20:14917525-14917156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:274
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):195, 17

               
               
               Conread position:219-630
               
               
               Cow position:chr20:5950382-5950798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:292
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):13, 143

               
               
               Conread position:220-326
               
               
               Cow position:chr20:18400191-18400085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:85
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:220-406
               
               
               Cow position:chr20:35589429-35589622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):96, 137

               
               
               Conread position:220-419
               
               
               Cow position:chr20:2316172-2316376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):17, 126

               
               
               Conread position:221-555
               
               
               Cow position:chr20:18622828-18622491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):96, 45

               
               
               Conread position:221-617
               
               
               Cow position:chr20:5024713-5025095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:271
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):119, 83

               
               
               Conread position:221-632
               
               
               Cow position:chr20:24070055-24069643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:272
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):100, 54

               
               
               Conread position:222-403
               
               
               Cow position:chr20:27323522-27323331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):14, 125

               
               
               Conread position:222-607
               
               
               Cow position:chr20:39518265-39517861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:263
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):18, 45

               
               
               Conread position:222-632
               
               
               Cow position:chr20:29805426-29805829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:273
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):186, 10

               
               
               Conread position:222-645
               
               
               Cow position:chr20:40257202-40256790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:287
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):90, 69

               
               
               Conread position:224-632
               
               
               Cow position:chr20:14572126-14572523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 98

               
               
               Conread position:224-632
               
               
               Cow position:chr20:15548643-15549064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:281
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):90, 8

               
               
               Conread position:227-412
               
               
               Cow position:chr20:11499251-11499066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):11, 116

               
               
               Conread position:228-403
               
               
               Cow position:chr20:1824385-1824563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):93, 116

               
               
               Conread position:228-627
               
               
               Cow position:chr20:10200597-10200185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 133

               
               
               Conread position:228-628
               
               
               Cow position:chr20:6054260-6054676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 52

               
               
               Conread position:228-632
               
               
               Cow position:chr20:6890951-6890538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:267
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):88, 10

               
               
               Conread position:228-632
               
               
               Cow position:chr20:11340558-11340972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:279
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):8, 40

               
               
               Conread position:228-632
               
               
               Cow position:chr20:19237318-19236911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 125

               
               
               Conread position:228-632
               
               
               Cow position:chr20:21345684-21345239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:302
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):54, 9

               
               
               Conread position:228-632
               
               
               Cow position:chr20:39417656-39418061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:273
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:228-637
               
               
               Cow position:chr20:32523710-32523296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:281
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):8, 128

               
               
               Conread position:229-420
               
               
               Cow position:chr20:35442036-35442234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):71, 115

               
               
               Conread position:229-562
               
               
               Cow position:chr20:7737989-7738323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):80, 181

               
               
               Conread position:229-613
               
               
               Cow position:chr20:30710393-30710798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:278
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):64, 28

               
               
               Conread position:231-537
               
               
               Cow position:chr20:21428401-21428094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):92, 224

               
               
               Conread position:231-545
               
               
               Cow position:chr20:5009975-5009659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):88, 128

               
               
               Conread position:231-632
               
               
               Cow position:chr20:33169629-33170042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:290
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):177, 72

               
               
               Conread position:232-404
               
               
               Cow position:chr20:7132868-7132690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):71, 124

               
               
               Conread position:232-438
               
               
               Cow position:chr20:12126059-12126278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):85, 119

               
               
               Conread position:232-520
               
               
               Cow position:chr20:9376704-9376414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):83, 57

               
               
               Conread position:232-534
               
               
               Cow position:chr20:33067117-33067432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):93, 277

               
               
               Conread position:232-592
               
               
               Cow position:chr20:28249425-28249057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:249
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):83, 127

               
               
               Conread position:232-605
               
               
               Cow position:chr20:32583563-32583170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:264
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):87, 229

               
               
               Conread position:232-610
               
               
               Cow position:chr20:14540570-14540207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:253
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):18, 75

               
               
               Conread position:232-621
               
               
               Cow position:chr20:15568721-15569106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:268
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):102, 31

               
               
               Conread position:232-622
               
               
               Cow position:chr20:13876467-13876865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:287
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):87, 27

               
               
               Conread position:232-628
               
               
               Cow position:chr20:15312893-15312496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:272
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):153, 39

               
               
               Conread position:232-629
               
               
               Cow position:chr20:20359560-20359941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:260
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):176, 34

               
               
               Conread position:232-629
               
               
               Cow position:chr20:34202884-34202483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:293
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):48, 131

               
               
               Conread position:232-630
               
               
               Cow position:chr20:29755020-29754621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 89

               
               
               Conread position:232-631
               
               
               Cow position:chr20:27407653-27408044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:272
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):163, 27

               
               
               Conread position:232-632
               
               
               Cow position:chr20:7441900-7442290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 28

               
               
               Conread position:232-632
               
               
               Cow position:chr20:8702688-8703074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:251
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):181, 96

               
               
               Conread position:232-632
               
               
               Cow position:chr20:22065303-22064903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:259
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):83, 174

               
               
               Conread position:232-632
               
               
               Cow position:chr20:25686124-25686519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:269
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):176, 67

               
               
               Conread position:232-632
               
               
               Cow position:chr20:31927217-31927625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:269
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):20, 184

               
               
               Conread position:232-632
               
               
               Cow position:chr20:38551619-38551207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:285
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):55, 168

               
               
               Conread position:232-632
               
               
               Cow position:chr20:40422855-40423257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:274
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):11, 235

               
               
               Conread position:232-645
               
               
               Cow position:chr20:22007727-22007324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:270
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):146, 89

               
               
               Conread position:232-645
               
               
               Cow position:chr20:29845297-29844875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 120

               
               
               Conread position:233-593
               
               
               Cow position:chr20:17470951-17470606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:250
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):91, 30

               
               
               Conread position:233-632
               
               
               Cow position:chr20:32083858-32084252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:267
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):102, 79

               
               
               Conread position:234-420
               
               
               Cow position:chr20:28935402-28935590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):109, 145

               
               
               Conread position:234-625
               
               
               Cow position:chr20:11045914-11045518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:272
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):82, 123

               
               
               Conread position:234-632
               
               
               Cow position:chr20:8578495-8578077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 235

               
               
               Conread position:234-633
               
               
               Cow position:chr20:25009393-25009811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:283
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):86, 176

               
               
               Conread position:234-635
               
               
               Cow position:chr20:7438617-7439019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:270
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):168, 237

               
               
               Conread position:235-532
               
               
               Cow position:chr20:11008412-11008104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):92, 124

               
               
               Conread position:235-614
               
               
               Cow position:chr20:28441558-28441177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:248
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):39, 86

               
               
               Conread position:235-645
               
               
               Cow position:chr20:12995754-12996188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 151

               
               
               Conread position:236-404
               
               
               Cow position:chr20:34848141-34847970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):73, 106

               
               
               Conread position:236-612
               
               
               Cow position:chr20:4334300-4334667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):171, 69

               
               
               Conread position:236-627
               
               
               Cow position:chr20:6240282-6240691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:276
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):66, 137

               
               
               Conread position:236-630
               
               
               Cow position:chr20:3599164-3599555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 28

               
               
               Conread position:236-632
               
               
               Cow position:chr20:5998423-5998831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:277
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):20, 34

               
               
               Conread position:236-632
               
               
               Cow position:chr20:12581718-12582114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:261
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):84, 219

               
               
               Conread position:236-632
               
               
               Cow position:chr20:28605444-28605038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:264
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):78, 161

               
               
               Conread position:236-632
               
               
               Cow position:chr20:33532528-33532144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:264
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):178, 57

               
               
               Conread position:237-633
               
               
               Cow position:chr20:13995047-13994641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:291
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):88, 29

               
               
               Conread position:238-645
               
               
               Cow position:chr20:18551601-18551183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:281
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):88, 123

               
               
               Conread position:242-452
               
               
               Cow position:chr20:11101634-11101426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):78, 50

               
               
               Conread position:242-597
               
               
               Cow position:chr20:34596871-34597231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):22, 100

               
               
               Conread position:242-632
               
               
               Cow position:chr20:12420387-12420788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:271
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):71, 134

               
               
               Conread position:242-632
               
               
               Cow position:chr20:13269846-13269456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:261
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):58, 136

               
               
               Conread position:243-632
               
               
               Cow position:chr20:7425967-7426356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:264
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):78, 219

               
               
               Conread position:243-632
               
               
               Cow position:chr20:14759443-14759831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:271
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):171, 72

               
               
               Conread position:243-645
               
               
               Cow position:chr20:13752444-13752060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:272
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:244-632
               
               
               Cow position:chr20:6424184-6423797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:263
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):252, 62

               
               
               Conread position:246-584
               
               
               Cow position:chr20:25161903-25162247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):74, 35

               
               
               Conread position:246-631
               
               
               Cow position:chr20:14880014-14879621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 107

               
               
               Conread position:246-632
               
               
               Cow position:chr20:7550462-7550074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:253
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):68, 113

               
               
               Conread position:246-632
               
               
               Cow position:chr20:40511544-40511925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:270
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):168, 56

               
               
               Conread position:247-530
               
               
               Cow position:chr20:354671-354961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):74, 103

               
               
               Conread position:248-575
               
               
               Cow position:chr20:10188501-10188165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:226
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):69, 100

               
               
               Conread position:248-614
               
               
               Cow position:chr20:23792822-23792458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:248
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):7, 70

               
               
               Conread position:248-626
               
               
               Cow position:chr20:22959118-22959503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 112

               
               
               Conread position:249-629
               
               
               Cow position:chr20:15073626-15073996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:245
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):165, 8

               
               
               Conread position:249-632
               
               
               Cow position:chr20:30817746-30817370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:263
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):173, 72

               
               
               Conread position:249-633
               
               
               Cow position:chr20:9433807-9433430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 93

               
               
               Conread position:250-632
               
               
               Cow position:chr20:6603255-6602874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 18

               
               
               Conread position:251-630
               
               
               Cow position:chr20:31746413-31746790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:246
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):70, 91

               
               
               Conread position:252-632
               
               
               Cow position:chr20:8429961-8429574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:277
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):76, 17

               
               
               Conread position:271-631
               
               
               Cow position:chr20:20739088-20739455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:252
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):14, 81

               
               
               Conread position:272-585
               
               
               Cow position:chr20:32463323-32463641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):48, 186

               
               
               Conread position:276-601
               
               
               Cow position:chr20:22485060-22484724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:233
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):22, 75

               
               
               Conread position:277-632
               
               
               Cow position:chr20:12239489-12239847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:238
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):37, 200

               
               
               Conread position:277-632
               
               
               Cow position:chr20:20203411-20203049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:246
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):43, 193

               
               
               Conread position:280-618
               
               
               Cow position:chr20:13025425-13025761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:233
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):104, 29

               
               
               Conread position:288-632
               
               
               Cow position:chr20:42458676-42459019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:226
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):12, 33

               
               
               Conread position:289-632
               
               
               Cow position:chr20:35365226-35364884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:228
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):37, 93

               
               
               Conread position:295-645
               
               
               Cow position:chr20:35009563-35009921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:251
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):40, 25

               
               
               Conread position:298-631
               
               
               Cow position:chr20:23870650-23870982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):110, 45

               
               
               Conread position:298-632
               
               
               Cow position:chr20:4621184-4621506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):34, 44

               
               
               Conread position:299-631
               
               
               Cow position:chr20:5827110-5826771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:219
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):14, 109

               
               
               Conread position:299-631
               
               
               Cow position:chr20:38578596-38578923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:228
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:299-632
               
               
               Cow position:chr20:17846128-17845792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:242
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):21, 43

               
               
               Conread position:299-645
               
               
               Cow position:chr20:21714938-21714573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:252
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):21, 44

               
               
               Conread position:310-632
               
               
               Cow position:chr20:6257900-6258231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):51, 147

               
               
               Conread position:310-632
               
               
               Cow position:chr20:35797767-35797438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 32

               
               
               Conread position:314-632
               
               
               Cow position:chr20:34777333-34777019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:229
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):93, 29

               
               
               Conread position:318-632
               
               
               Cow position:chr20:33363667-33363353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):84, 23

               
               
               Conread position:319-620
               
               
               Cow position:chr20:5636630-5636325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:220
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):15, 23

               
               
               Conread position:319-631
               
               
               Cow position:chr20:580771-581087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:209
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):15, 23

               
               
               Conread position:319-632
               
               
               Cow position:chr20:36207963-36207635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):82, 144

               
               
               Conread position:319-632
               
               
               Cow position:chr20:38768314-38768620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):84, 121

               
               
               Conread position:320-631
               
               
               Cow position:chr20:18320646-18320961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):75, 119

               
               
               Conread position:320-631
               
               
               Cow position:chr20:42469907-42469598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):64, 76

               
               
               Conread position:320-632
               
               
               Cow position:chr20:14100288-14100605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:215
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):182, 21

               
               
               Conread position:320-632
               
               
               Cow position:chr20:41627193-41627513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):92, 21

               
               
               Conread position:320-637
               
               
               Cow position:chr20:15565681-15566002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:221
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):86, 50

               
               
               Conread position:321-632
               
               
               Cow position:chr20:39415896-39415573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):86, 28

               
               
               Conread position:321-632
               
               
               Cow position:chr20:39728598-39728281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:226
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):20, 12

               
               
               Conread position:321-645
               
               
               Cow position:chr20:9412635-9412312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):87, 123

               
               
               Conread position:322-619
               
               
               Cow position:chr20:21761920-21761622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):91, 19

               
               
               Conread position:323-579
               
               
               Cow position:chr20:5385599-5385856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:178
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):26, 15

               
               
               Conread position:323-629
               
               
               Cow position:chr20:31323931-31323634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):85, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr20:3321000-3321305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):118, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr20:19751451-19751142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:210
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):83, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr20:23064691-23064996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:219
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):93, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr20:33144409-33144722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):85, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr20:35906906-35907214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:213
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):60, 18

               
               
               Conread position:324-632
               
               
               Cow position:chr20:11542144-11542450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):176, 116

               
               
               Conread position:324-632
               
               
               Cow position:chr20:28067280-28067593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):92, 9

               
               
               Conread position:325-594
               
               
               Cow position:chr20:36040617-36040343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):43, 24

               
               
               Conread position:325-613
               
               
               Cow position:chr20:6096353-6096639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):83, 16

               
               
               Conread position:325-627
               
               
               Cow position:chr20:35999835-35999525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:203
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):85, 26

               
               
               Conread position:328-618
               
               
               Cow position:chr20:1576237-1575946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):9, 5

               
               
               Conread position:334-627
               
               
               Cow position:chr20:34918404-34918117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):111, 15

               
               
               Conread position:346-632
               
               
               Cow position:chr20:16715514-16715233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):68, 77

               
               
               Conread position:346-632
               
               
               Cow position:chr20:37165832-37165559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:349-632
               
               
               Cow position:chr20:35958768-35958478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:210
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):27, 19

               
               
               Conread position:350-645
               
               
               Cow position:chr20:39019814-39019515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):56, 102

               
               
               Conread position:351-628
               
               
               Cow position:chr20:271306-271586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):57, 120

               
               
               Conread position:352-632
               
               
               Cow position:chr20:6501910-6501632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):62, 53

               
               
               Conread position:352-632
               
               
               Cow position:chr20:26077198-26076917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):62, 55

               
               
               Conread position:352-632
               
               
               Cow position:chr20:41028605-41028316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:194
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):53, 63

               
               
               Conread position:356-622
               
               
               Cow position:chr20:39405872-39405601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):51, 12

               
               
               Conread position:356-632
               
               
               Cow position:chr20:3606849-3607121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):31, 100

               
               
               Conread position:359-621
               
               
               Cow position:chr20:20471894-20471631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:183
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):63, 164

               
               
               Conread position:361-632
               
               
               Cow position:chr20:3331178-3331461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:189
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):69, 61

               
               
               Conread position:361-637
               
               
               Cow position:chr20:34001282-34001567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):47, 91

               
               
               Conread position:362-632
               
               
               Cow position:chr20:7211146-7210868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):17, 55

               
               
               Conread position:362-632
               
               
               Cow position:chr20:11482027-11482306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:198
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):5, 96

               
               
               Conread position:362-632
               
               
               Cow position:chr20:22313053-22313324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):5, 46

               
               
               Conread position:366-624
               
               
               Cow position:chr20:11176145-11176406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):42, 94

               
               
               Conread position:379-632
               
               
               Cow position:chr20:14735758-14735509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):119, 48

               
               
               Conread position:382-631
               
               
               Cow position:chr20:13967173-13967424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):34, 13

               
               
               Conread position:382-632
               
               
               Cow position:chr20:9473528-9473781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):40, 87

               
               
               Conread position:382-632
               
               
               Cow position:chr20:23505911-23505661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):21, 50

               
               
               Conread position:384-632
               
               
               Cow position:chr20:11864049-11864303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):64, 21

               
               
               Conread position:394-631
               
               
               Cow position:chr20:20202066-20201826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):19, 206

               
               
               Conread position:395-632
               
               
               Cow position:chr20:11923175-11923406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):24, 45

               
               
               Conread position:399-630
               
               
               Cow position:chr20:19312998-19313230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):23, 57

               
               
               Conread position:399-645
               
               
               Cow position:chr20:22704362-22704108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):17, 243

               
               
               Conread position:401-632
               
               
               Cow position:chr20:31069704-31069468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):21, 78

               
               
               Conread position:402-632
               
               
               Cow position:chr20:17904221-17903993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):94, 44

               
               
               Conread position:402-646
               
               
               Cow position:chr20:28832033-28831781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):96, 56

               
               
               Conread position:407-632
               
               
               Cow position:chr20:10178042-10178277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):82, 5

               
               
               Conread position:407-632
               
               
               Cow position:chr20:23936345-23936585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):15, 59

               
               
               Conread position:409-632
               
               
               Cow position:chr20:20312690-20312904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):17, 48

               
               
               Conread position:411-628
               
               
               Cow position:chr20:34240591-34240362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:411-629
               
               
               Cow position:chr20:37272768-37272549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):89, 47

               
               
               Conread position:411-637
               
               
               Cow position:chr20:32068798-32069028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):93, 40

               
               
               Conread position:412-631
               
               
               Cow position:chr20:24392031-24391814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):86, 46

               
               
               Conread position:412-633
               
               
               Cow position:chr20:35897574-35897350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):14, 22

               
               
               Conread position:413-632
               
               
               Cow position:chr20:17733723-17733945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):87, 16

               
               
               Conread position:414-631
               
               
               Cow position:chr20:6848681-6848455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:415-632
               
               
               Cow position:chr20:27340112-27339899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:421-632
               
               
               Cow position:chr20:3781380-3781593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:432-631
               
               
               Cow position:chr20:8910952-8910758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):111, 44

               
               
               Conread position:442-631
               
               
               Cow position:chr20:14831590-14831778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):72, 21

               
               
               Conread position:444-632
               
               
               Cow position:chr20:19146898-19146703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:444-632
               
               
               Cow position:chr20:37200383-37200186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):27, 37

               
               
               Conread position:448-632
               
               
               Cow position:chr20:24521769-24521584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:448-632
               
               
               Cow position:chr20:26680144-26679955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):52, 19

               
               
               Conread position:459-632
               
               
               Cow position:chr20:18399772-18399593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:459-632
               
               
               Cow position:chr20:40185673-40185843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):36, 22

               
               
               Conread position:463-622
               
               
               Cow position:chr20:32988835-32988989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):35, 82

               
               
               Conread position:463-631
               
               
               Cow position:chr20:26469059-26469231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:463-632
               
               
               Cow position:chr20:8020902-8020727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:463-632
               
               
               Cow position:chr20:15235773-15235598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:463-632
               
               
               Cow position:chr20:15760943-15761115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):35, 46

               
               
               Conread position:463-633
               
               
               Cow position:chr20:33177194-33177014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):35, 111

               
               
               Conread position:469-632
               
               
               Cow position:chr20:5269074-5269236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):27, 51

               
               
               Conread position:470-632
               
               
               Cow position:chr20:5104443-5104602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):30, 97

               
               
               Conread position:470-632
               
               
               Cow position:chr20:32636572-32636732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):81, 9

               
               
               Conread position:471-629
               
               
               Cow position:chr20:7132350-7132184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:471-629
               
               
               Cow position:chr20:23679151-23679310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):18, 96

               
               
               Conread position:471-632
               
               
               Cow position:chr20:12441689-12441859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:471-632
               
               
               Cow position:chr20:15582041-15582203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):23, 9

               
               
               Conread position:471-632
               
               
               Cow position:chr20:16291468-16291305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):72, 50

               
               
               Conread position:471-645
               
               
               Cow position:chr20:9379406-9379229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:476-629
               
               
               Cow position:chr20:5025313-5025466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):22, 84

               
               
               Conread position:481-632
               
               
               Cow position:chr20:20351001-20351156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:113
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:485-611
               
               
               Cow position:chr20:9730066-9729939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:485-630
               
               
               Cow position:chr20:13956020-13955875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:108
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):24, 132

               
               
               Conread position:493-645
               
               
               Cow position:chr20:39377181-39377325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):52, 72

               
               
               Conread position:494-632
               
               
               Cow position:chr20:23850257-23850117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:495-622
               
               
               Cow position:chr20:20242067-20241943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):42, 14

               
               
               Conread position:495-631
               
               
               Cow position:chr20:9988558-9988421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:495-631
               
               
               Cow position:chr20:22445667-22445801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:111
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr20:10235826-10235685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:106
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr20:11043532-11043663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr20:11550336-11550199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):123, 81

               
               
               Conread position:495-632
               
               
               Cow position:chr20:15593265-15593129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):42, 24

               
               
               Conread position:495-632
               
               
               Cow position:chr20:35760640-35760504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr20:41119882-41119748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr20:41977385-41977254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:104
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:495-645
               
               
               Cow position:chr20:19410394-19410549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):48, 60

               
               
               Conread position:497-633
               
               
               Cow position:chr20:40157219-40157087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:498-631
               
               
               Cow position:chr20:4781533-4781396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:503-628
               
               
               Cow position:chr20:24902500-24902628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):82, 39

               
               
               Conread position:503-632
               
               
               Cow position:chr20:5702711-5702578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:503-636
               
               
               Cow position:chr20:31077516-31077377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:505-645
               
               
               Cow position:chr20:5116341-5116485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:509-632
               
               
               Cow position:chr20:14740139-14740265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):34, 55

               
               
               Conread position:511-633
               
               
               Cow position:chr20:12784150-12784029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:514-632
               
               
               Cow position:chr20:13023523-13023645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:524-645
               
               
               Cow position:chr20:14718801-14718921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:94
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:176-631
               
               
               Cow position:chr21:957992-957521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 166

               
               
               Conread position:199-632
               
               
               Cow position:chr21:15911678-15911254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 64

               
               
               Conread position:200-624
               
               
               Cow position:chr21:11115014-11114573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:291
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):96, 28

               
               
               Conread position:206-631
               
               
               Cow position:chr21:9416543-9416097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 145

               
               
               Conread position:207-389
               
               
               Cow position:chr21:18495504-18495321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):29, 141

               
               
               Conread position:208-589
               
               
               Cow position:chr21:8207045-8206669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:258
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):29, 92

               
               
               Conread position:208-625
               
               
               Cow position:chr21:14452520-14452098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 62

               
               
               Conread position:208-626
               
               
               Cow position:chr21:41621415-41620979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 151

               
               
               Conread position:208-632
               
               
               Cow position:chr21:34023-33575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 165

               
               
               Conread position:209-420
               
               
               Cow position:chr21:40475790-40475568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):13, 144

               
               
               Conread position:209-539
               
               
               Cow position:chr21:17890589-17890250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 148

               
               
               Conread position:209-627
               
               
               Cow position:chr21:19083299-19083742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 150

               
               
               Conread position:209-632
               
               
               Cow position:chr21:18800243-18800675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:271
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):19, 25

               
               
               Conread position:210-326
               
               
               Cow position:chr21:17910970-17911086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:91
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:211-562
               
               
               Cow position:chr21:16570173-16569825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):96, 51

               
               
               Conread position:212-531
               
               
               Cow position:chr21:33580694-33580376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):114, 70

               
               
               Conread position:212-593
               
               
               Cow position:chr21:12916135-12916533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:258
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):104, 148

               
               
               Conread position:213-371
               
               
               Cow position:chr21:30359066-30359227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):18, 133

               
               
               Conread position:213-628
               
               
               Cow position:chr21:13089186-13089610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:288
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):18, 54

               
               
               Conread position:213-644
               
               
               Cow position:chr21:6834334-6833894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 135

               
               
               Conread position:214-559
               
               
               Cow position:chr21:33413816-33414158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):53, 87

               
               
               Conread position:214-624
               
               
               Cow position:chr21:18318994-18318588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:280
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):81, 173

               
               
               Conread position:214-632
               
               
               Cow position:chr21:31662727-31662314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:283
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):201, 18

               
               
               Conread position:214-632
               
               
               Cow position:chr21:33982533-33982955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:284
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):93, 190

               
               
               Conread position:214-633
               
               
               Cow position:chr21:34654352-34653934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:285
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):6, 111

               
               
               Conread position:215-326
               
               
               Cow position:chr21:38440717-38440605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:92
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:215-404
               
               
               Cow position:chr21:24757219-24757026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):25, 101

               
               
               Conread position:215-418
               
               
               Cow position:chr21:42189480-42189690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):99, 128

               
               
               Conread position:215-419
               
               
               Cow position:chr21:37837797-37837996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):21, 82

               
               
               Conread position:215-428
               
               
               Cow position:chr21:30976991-30977195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):94, 11

               
               
               Conread position:215-451
               
               
               Cow position:chr21:742553-742322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):100, 17

               
               
               Conread position:215-451
               
               
               Cow position:chr21:8713676-8713928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):22, 145

               
               
               Conread position:215-538
               
               
               Cow position:chr21:28919248-28919576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:238
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):13, 132

               
               
               Conread position:215-627
               
               
               Cow position:chr21:11027078-11027499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:285
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):125, 70

               
               
               Conread position:215-632
               
               
               Cow position:chr21:19195879-19196313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 150

               
               
               Conread position:215-645
               
               
               Cow position:chr21:5427207-5426784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):206, 82

               
               
               Conread position:216-324
               
               
               Cow position:chr21:41829099-41829207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:88
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:216-402
               
               
               Cow position:chr21:3135592-3135782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):103, 12

               
               
               Conread position:216-402
               
               
               Cow position:chr21:28882458-28882268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):104, 12

               
               
               Conread position:216-405
               
               
               Cow position:chr21:20174590-20174402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):76, 16

               
               
               Conread position:216-406
               
               
               Cow position:chr21:16895685-16895497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):105, 51

               
               
               Conread position:216-406
               
               
               Cow position:chr21:18450034-18449836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):102, 144

               
               
               Conread position:216-406
               
               
               Cow position:chr21:22005623-22005820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):21, 37

               
               
               Conread position:216-419
               
               
               Cow position:chr21:12349047-12348835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):105, 143

               
               
               Conread position:216-419
               
               
               Cow position:chr21:21940130-21940337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):15, 100

               
               
               Conread position:216-420
               
               
               Cow position:chr21:5218987-5218769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):105, 130

               
               
               Conread position:216-451
               
               
               Cow position:chr21:31652667-31652422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):21, 145

               
               
               Conread position:216-496
               
               
               Cow position:chr21:44724098-44724373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):97, 16

               
               
               Conread position:216-513
               
               
               Cow position:chr21:38720529-38720225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):19, 132

               
               
               Conread position:216-533
               
               
               Cow position:chr21:21907160-21907476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:227
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):23, 103

               
               
               Conread position:216-540
               
               
               Cow position:chr21:13656356-13656683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):103, 12

               
               
               Conread position:216-560
               
               
               Cow position:chr21:47719027-47719373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:224
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):105, 16

               
               
               Conread position:216-596
               
               
               Cow position:chr21:23979899-23980292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 144

               
               
               Conread position:216-613
               
               
               Cow position:chr21:47323-46911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 12

               
               
               Conread position:216-618
               
               
               Cow position:chr21:15584144-15584546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 50

               
               
               Conread position:216-622
               
               
               Cow position:chr21:6909610-6910020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:278
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):205, 82

               
               
               Conread position:216-624
               
               
               Cow position:chr21:41590287-41590695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:275
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):125, 101

               
               
               Conread position:216-625
               
               
               Cow position:chr21:938300-937899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 141

               
               
               Conread position:216-626
               
               
               Cow position:chr21:9477440-9477018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:283
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):110, 15

               
               
               Conread position:216-626
               
               
               Cow position:chr21:48233897-48234299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:259
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):206, 48

               
               
               Conread position:216-627
               
               
               Cow position:chr21:9301504-9301067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:298
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):102, 143

               
               
               Conread position:216-629
               
               
               Cow position:chr21:27521061-27521472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 37

               
               
               Conread position:216-629
               
               
               Cow position:chr21:38918482-38918071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:294
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):21, 133

               
               
               Conread position:216-630
               
               
               Cow position:chr21:3763470-3763882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:296
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):17, 49

               
               
               Conread position:216-631
               
               
               Cow position:chr21:5595913-5595514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:282
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):15, 93

               
               
               Conread position:216-631
               
               
               Cow position:chr21:49699756-49700181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 137

               
               
               Conread position:216-632
               
               
               Cow position:chr21:4281603-4282014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 129

               
               
               Conread position:216-632
               
               
               Cow position:chr21:23535991-23535570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 16

               
               
               Conread position:216-632
               
               
               Cow position:chr21:25127894-25127461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:286
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):16, 153

               
               
               Conread position:216-632
               
               
               Cow position:chr21:27863239-27863666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 126

               
               
               Conread position:216-632
               
               
               Cow position:chr21:38121355-38120961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:278
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):53, 12

               
               
               Conread position:216-632
               
               
               Cow position:chr21:41156150-41155714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 130

               
               
               Conread position:216-632
               
               
               Cow position:chr21:45151342-45151769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:285
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):13, 205

               
               
               Conread position:216-633
               
               
               Cow position:chr21:34010119-34010538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:290
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):77, 15

               
               
               Conread position:216-633
               
               
               Cow position:chr21:38901042-38900627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 100

               
               
               Conread position:217-324
               
               
               Cow position:chr21:16676234-16676125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:88
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:217-393
               
               
               Cow position:chr21:16498793-16498612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:217-405
               
               
               Cow position:chr21:27744308-27744109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):20, 131

               
               
               Conread position:217-580
               
               
               Cow position:chr21:17559638-17560023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:261
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):101, 150

               
               
               Conread position:217-632
               
               
               Cow position:chr21:11739842-11740277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:291
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):12, 30

               
               
               Conread position:217-632
               
               
               Cow position:chr21:12981459-12981883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:268
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):105, 134

               
               
               Conread position:217-632
               
               
               Cow position:chr21:40589200-40589629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:292
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):20, 135

               
               
               Conread position:217-632
               
               
               Cow position:chr21:44565451-44565847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:263
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):82, 47

               
               
               Conread position:218-406
               
               
               Cow position:chr21:15305018-15305216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):79, 142

               
               
               Conread position:218-420
               
               
               Cow position:chr21:27677760-27677551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):101, 131

               
               
               Conread position:218-420
               
               
               Cow position:chr21:44829480-44829690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):101, 18

               
               
               Conread position:218-421
               
               
               Cow position:chr21:745444-745243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):103, 13

               
               
               Conread position:218-462
               
               
               Cow position:chr21:71861-71612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):123, 10

               
               
               Conread position:218-621
               
               
               Cow position:chr21:20418429-20418825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:272
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):190, 80

               
               
               Conread position:218-627
               
               
               Cow position:chr21:9311331-9310904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:285
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):110, 10

               
               
               Conread position:218-628
               
               
               Cow position:chr21:44825599-44826026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:287
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):81, 14

               
               
               Conread position:218-629
               
               
               Cow position:chr21:25345144-25344734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:279
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):13, 144

               
               
               Conread position:218-629
               
               
               Cow position:chr21:37706138-37706550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 10

               
               
               Conread position:218-632
               
               
               Cow position:chr21:5650175-5649759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:259
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):147, 109

               
               
               Conread position:218-632
               
               
               Cow position:chr21:22718507-22718927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 18

               
               
               Conread position:218-632
               
               
               Cow position:chr21:41974088-41974525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:296
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):19, 145

               
               
               Conread position:218-650
               
               
               Cow position:chr21:82333-81906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:290
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):282, 10

               
               
               Conread position:219-404
               
               
               Cow position:chr21:8558199-8558389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):40, 138

               
               
               Conread position:219-406
               
               
               Cow position:chr21:7539251-7539445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):97, 27

               
               
               Conread position:219-413
               
               
               Cow position:chr21:18578294-18578485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):120, 12

               
               
               Conread position:219-414
               
               
               Cow position:chr21:31658877-31659074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):18, 135

               
               
               Conread position:219-420
               
               
               Cow position:chr21:13580691-13580480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):99, 139

               
               
               Conread position:219-420
               
               
               Cow position:chr21:20213496-20213708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):76, 11

               
               
               Conread position:219-487
               
               
               Cow position:chr21:13589039-13588763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):18, 141

               
               
               Conread position:219-526
               
               
               Cow position:chr21:17983247-17982936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):88, 32

               
               
               Conread position:219-622
               
               
               Cow position:chr21:17512050-17511640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:282
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):58, 133

               
               
               Conread position:219-628
               
               
               Cow position:chr21:23568500-23568071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:294
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):90, 11

               
               
               Conread position:219-631
               
               
               Cow position:chr21:10264311-10263895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 139

               
               
               Conread position:219-632
               
               
               Cow position:chr21:29001874-29002308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:282
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):80, 10

               
               
               Conread position:219-632
               
               
               Cow position:chr21:40134422-40134010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):182, 85

               
               
               Conread position:219-632
               
               
               Cow position:chr21:42135343-42135770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:275
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):102, 228

               
               
               Conread position:219-633
               
               
               Cow position:chr21:30592040-30592451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 10

               
               
               Conread position:220-402
               
               
               Cow position:chr21:19220520-19220711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):96, 140

               
               
               Conread position:220-450
               
               
               Cow position:chr21:31279528-31279291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:220-522
               
               
               Cow position:chr21:42209372-42209667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):187, 11

               
               
               Conread position:220-558
               
               
               Cow position:chr21:1511560-1511219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:234
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):80, 17

               
               
               Conread position:220-623
               
               
               Cow position:chr21:20153232-20152810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 248

               
               
               Conread position:220-643
               
               
               Cow position:chr21:23606943-23606514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:294
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):13, 51

               
               
               Conread position:221-618
               
               
               Cow position:chr21:15545088-15545503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:267
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):57, 192

               
               
               Conread position:221-632
               
               
               Cow position:chr21:17455658-17455238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:276
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):18, 45

               
               
               Conread position:221-632
               
               
               Cow position:chr21:39403254-39403685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:286
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):75, 69

               
               
               Conread position:222-631
               
               
               Cow position:chr21:33727206-33727606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:275
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):11, 78

               
               
               Conread position:222-632
               
               
               Cow position:chr21:15444808-15445225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:297
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):15, 138

               
               
               Conread position:223-632
               
               
               Cow position:chr21:36763335-36762907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:298
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):15, 126

               
               
               Conread position:224-629
               
               
               Cow position:chr21:38449180-38449595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 161

               
               
               Conread position:224-650
               
               
               Cow position:chr21:27568889-27569325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:297
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):74, 8

               
               
               Conread position:225-632
               
               
               Cow position:chr21:19958487-19958076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:279
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):11, 126

               
               
               Conread position:225-632
               
               
               Cow position:chr21:29213889-29214295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:270
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):99, 25

               
               
               Conread position:225-632
               
               
               Cow position:chr21:37299729-37299321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:273
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):41, 7

               
               
               Conread position:226-452
               
               
               Cow position:chr21:26562888-26563129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):11, 193

               
               
               Conread position:227-396
               
               
               Cow position:chr21:6851433-6851265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:227-456
               
               
               Cow position:chr21:15271170-15271402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):9, 33

               
               
               Conread position:227-630
               
               
               Cow position:chr21:12154393-12153991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 126

               
               
               Conread position:227-632
               
               
               Cow position:chr21:46848864-46849269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:273
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):11, 117

               
               
               Conread position:228-539
               
               
               Cow position:chr21:18059692-18060009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):89, 135

               
               
               Conread position:228-558
               
               
               Cow position:chr21:40266392-40266049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:244
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):8, 124

               
               
               Conread position:228-631
               
               
               Cow position:chr21:23587139-23586731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 86

               
               
               Conread position:228-632
               
               
               Cow position:chr21:10004616-10005032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 131

               
               
               Conread position:228-632
               
               
               Cow position:chr21:13047922-13048343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:280
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):8, 136

               
               
               Conread position:228-632
               
               
               Cow position:chr21:27123857-27124273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:269
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):8, 127

               
               
               Conread position:228-632
               
               
               Cow position:chr21:44251573-44251972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:288
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):8, 36

               
               
               Conread position:230-660
               
               
               Cow position:chr21:45970913-45971332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:294
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):6, 122

               
               
               Conread position:231-622
               
               
               Cow position:chr21:17874926-17875332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 62

               
               
               Conread position:231-625
               
               
               Cow position:chr21:28810011-28810403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:268
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):161, 68

               
               
               Conread position:232-386
               
               
               Cow position:chr21:21145651-21145500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:232-420
               
               
               Cow position:chr21:43316629-43316828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):71, 127

               
               
               Conread position:232-447
               
               
               Cow position:chr21:29658537-29658322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):87, 123

               
               
               Conread position:232-493
               
               
               Cow position:chr21:8545756-8546022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:191
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):12, 119

               
               
               Conread position:232-496
               
               
               Cow position:chr21:32392800-32393058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):88, 11

               
               
               Conread position:232-503
               
               
               Cow position:chr21:40291486-40291757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):89, 114

               
               
               Conread position:232-563
               
               
               Cow position:chr21:44214374-44214047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):155, 74

               
               
               Conread position:232-607
               
               
               Cow position:chr21:10673373-10673010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:248
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):264, 66

               
               
               Conread position:232-609
               
               
               Cow position:chr21:30222605-30222218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:258
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):67, 223

               
               
               Conread position:232-624
               
               
               Cow position:chr21:45356078-45355698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:274
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):101, 66

               
               
               Conread position:232-625
               
               
               Cow position:chr21:6713261-6713662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:268
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):88, 219

               
               
               Conread position:232-629
               
               
               Cow position:chr21:5898146-5898541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:268
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):81, 18

               
               
               Conread position:232-631
               
               
               Cow position:chr21:643583-643188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:263
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):89, 27

               
               
               Conread position:232-631
               
               
               Cow position:chr21:27229540-27229940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:264
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):163, 72

               
               
               Conread position:232-631
               
               
               Cow position:chr21:32297245-32297656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:278
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):77, 131

               
               
               Conread position:232-631
               
               
               Cow position:chr21:40899604-40899191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:279
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):94, 56

               
               
               Conread position:232-632
               
               
               Cow position:chr21:802060-802440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:266
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):37, 89

               
               
               Conread position:232-632
               
               
               Cow position:chr21:3585101-3585505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 229

               
               
               Conread position:232-632
               
               
               Cow position:chr21:5970583-5970984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:278
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):93, 66

               
               
               Conread position:232-632
               
               
               Cow position:chr21:18289911-18289516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:266
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):176, 15

               
               
               Conread position:232-632
               
               
               Cow position:chr21:20262084-20262480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:256
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):142, 32

               
               
               Conread position:232-632
               
               
               Cow position:chr21:28028062-28027657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:278
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):94, 129

               
               
               Conread position:232-632
               
               
               Cow position:chr21:28244730-28244329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 120

               
               
               Conread position:232-632
               
               
               Cow position:chr21:32339482-32339883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 111

               
               
               Conread position:232-632
               
               
               Cow position:chr21:32559108-32559500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:265
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):51, 104

               
               
               Conread position:232-632
               
               
               Cow position:chr21:33791134-33791514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:271
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):102, 32

               
               
               Conread position:232-632
               
               
               Cow position:chr21:33996987-33997368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:280
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):83, 43

               
               
               Conread position:232-632
               
               
               Cow position:chr21:42501315-42500886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 126

               
               
               Conread position:232-632
               
               
               Cow position:chr21:42841322-42841739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:284
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):73, 193

               
               
               Conread position:232-632
               
               
               Cow position:chr21:47861444-47861048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:278
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):217, 34

               
               
               Conread position:232-633
               
               
               Cow position:chr21:4400056-4399652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:270
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):182, 62

               
               
               Conread position:232-633
               
               
               Cow position:chr21:6051768-6051359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 233

               
               
               Conread position:232-645
               
               
               Cow position:chr21:641847-641425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:293
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):89, 82

               
               
               Conread position:233-402
               
               
               Cow position:chr21:6292011-6291833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):88, 117

               
               
               Conread position:233-414
               
               
               Cow position:chr21:48482268-48482455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):65, 114

               
               
               Conread position:233-461
               
               
               Cow position:chr21:16082851-16083095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:171
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):86, 9

               
               
               Conread position:233-517
               
               
               Cow position:chr21:22851177-22850888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:186
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):74, 210

               
               
               Conread position:233-628
               
               
               Cow position:chr21:23310692-23311090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:281
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):161, 97

               
               
               Conread position:233-632
               
               
               Cow position:chr21:29069061-29069475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 231

               
               
               Conread position:233-645
               
               
               Cow position:chr21:28733650-28734071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 22

               
               
               Conread position:234-452
               
               
               Cow position:chr21:24797916-24797690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):78, 106

               
               
               Conread position:234-538
               
               
               Cow position:chr21:36910998-36910688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):67, 104

               
               
               Conread position:234-629
               
               
               Cow position:chr21:17184179-17183778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 110

               
               
               Conread position:234-632
               
               
               Cow position:chr21:11644704-11645115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:277
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):9, 110

               
               
               Conread position:234-645
               
               
               Cow position:chr21:24858577-24858152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:276
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):80, 229

               
               
               Conread position:235-403
               
               
               Cow position:chr21:2536876-2537053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):72, 124

               
               
               Conread position:235-579
               
               
               Cow position:chr21:21686677-21686324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):68, 33

               
               
               Conread position:235-632
               
               
               Cow position:chr21:23673005-23672597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:274
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):68, 42

               
               
               Conread position:235-632
               
               
               Cow position:chr21:29014657-29015038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:273
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):78, 114

               
               
               Conread position:236-389
               
               
               Cow position:chr21:29011717-29011870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):85, 109

               
               
               Conread position:236-403
               
               
               Cow position:chr21:30970194-30970021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):85, 38

               
               
               Conread position:236-539
               
               
               Cow position:chr21:868660-868978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):70, 117

               
               
               Conread position:236-574
               
               
               Cow position:chr21:15543980-15544305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):262, 30

               
               
               Conread position:236-575
               
               
               Cow position:chr21:22209984-22210333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):84, 68

               
               
               Conread position:236-578
               
               
               Cow position:chr21:6998200-6997846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:238
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):86, 59

               
               
               Conread position:236-624
               
               
               Cow position:chr21:12461710-12462109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 223

               
               
               Conread position:236-631
               
               
               Cow position:chr21:34740085-34739701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:269
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):165, 63

               
               
               Conread position:236-632
               
               
               Cow position:chr21:21223521-21223143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:264
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):179, 57

               
               
               Conread position:236-632
               
               
               Cow position:chr21:30231437-30231848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 85

               
               
               Conread position:236-632
               
               
               Cow position:chr21:30848689-30849085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:276
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):169, 104

               
               
               Conread position:236-632
               
               
               Cow position:chr21:36756867-36756468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:292
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):80, 33

               
               
               Conread position:236-632
               
               
               Cow position:chr21:47763867-47764259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:262
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):77, 35

               
               
               Conread position:236-645
               
               
               Cow position:chr21:34738830-34738439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:275
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):85, 26

               
               
               Conread position:237-567
               
               
               Cow position:chr21:16152698-16152350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:232
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):84, 109

               
               
               Conread position:238-389
               
               
               Cow position:chr21:32536648-32536496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):69, 104

               
               
               Conread position:239-628
               
               
               Cow position:chr21:17193492-17193902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 177

               
               
               Conread position:241-616
               
               
               Cow position:chr21:34151830-34151450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:267
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):72, 25

               
               
               Conread position:242-616
               
               
               Cow position:chr21:30835619-30835234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:254
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):84, 108

               
               
               Conread position:242-629
               
               
               Cow position:chr21:20160931-20160540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 24

               
               
               Conread position:242-645
               
               
               Cow position:chr21:47464866-47465280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:264
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):79, 125

               
               
               Conread position:243-582
               
               
               Cow position:chr21:22121754-22121426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:233
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):67, 104

               
               
               Conread position:243-632
               
               
               Cow position:chr21:22861244-22860855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:267
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):171, 58

               
               
               Conread position:244-632
               
               
               Cow position:chr21:31691726-31691332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:263
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):17, 57

               
               
               Conread position:245-600
               
               
               Cow position:chr21:31253784-31253429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:242
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):5, 104

               
               
               Conread position:246-420
               
               
               Cow position:chr21:41287547-41287724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):67, 163

               
               
               Conread position:246-539
               
               
               Cow position:chr21:11779289-11779582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):47, 105

               
               
               Conread position:246-593
               
               
               Cow position:chr21:10561336-10561692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):66, 219

               
               
               Conread position:246-632
               
               
               Cow position:chr21:3360767-3361161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 100

               
               
               Conread position:246-632
               
               
               Cow position:chr21:8351045-8351451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:277
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):75, 200

               
               
               Conread position:246-645
               
               
               Cow position:chr21:10114084-10114488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 111

               
               
               Conread position:247-562
               
               
               Cow position:chr21:10410471-10410142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):50, 110

               
               
               Conread position:248-627
               
               
               Cow position:chr21:29978518-29978903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:265
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):22, 11

               
               
               Conread position:248-632
               
               
               Cow position:chr21:28211424-28211050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:252
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):21, 67

               
               
               Conread position:248-633
               
               
               Cow position:chr21:14760804-14760433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:260
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):65, 31

               
               
               Conread position:250-632
               
               
               Cow position:chr21:41198152-41198557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:270
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):75, 13

               
               
               Conread position:251-633
               
               
               Cow position:chr21:29979528-29979903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:258
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):58, 106

               
               
               Conread position:252-633
               
               
               Cow position:chr21:41579998-41579600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:274
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):49, 36

               
               
               Conread position:264-633
               
               
               Cow position:chr21:33350967-33350595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):16, 79

               
               
               Conread position:268-632
               
               
               Cow position:chr21:36795830-36795457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:251
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):27, 190

               
               
               Conread position:271-632
               
               
               Cow position:chr21:1059289-1058930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:252
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):148, 37

               
               
               Conread position:271-632
               
               
               Cow position:chr21:17642765-17643119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:249
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):50, 73

               
               
               Conread position:271-632
               
               
               Cow position:chr21:19259040-19258680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:254
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):52, 130

               
               
               Conread position:277-632
               
               
               Cow position:chr21:21169275-21169641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:255
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):40, 74

               
               
               Conread position:279-594
               
               
               Cow position:chr21:45329738-45330056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):41, 65

               
               
               Conread position:286-630
               
               
               Cow position:chr21:8235361-8235689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):130, 11

               
               
               Conread position:291-631
               
               
               Cow position:chr21:3818407-3818071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:231
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):22, 59

               
               
               Conread position:291-632
               
               
               Cow position:chr21:45473561-45473903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):43, 8

               
               
               Conread position:294-632
               
               
               Cow position:chr21:29485172-29484837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):101, 26

               
               
               Conread position:298-630
               
               
               Cow position:chr21:5392341-5392687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):25, 161

               
               
               Conread position:298-632
               
               
               Cow position:chr21:10633451-10633787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:231
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):97, 39

               
               
               Conread position:298-632
               
               
               Cow position:chr21:23321888-23322230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:236
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):110, 43

               
               
               Conread position:299-631
               
               
               Cow position:chr21:28989803-28989467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:234
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):35, 43

               
               
               Conread position:299-633
               
               
               Cow position:chr21:18790377-18790703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):123, 42

               
               
               Conread position:300-632
               
               
               Cow position:chr21:30606901-30607234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:232
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):74, 11

               
               
               Conread position:301-624
               
               
               Cow position:chr21:11360223-11359899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:221
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):56, 26

               
               
               Conread position:309-645
               
               
               Cow position:chr21:37344922-37345261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):105, 32

               
               
               Conread position:312-632
               
               
               Cow position:chr21:36297669-36297332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):90, 18

               
               
               Conread position:312-635
               
               
               Cow position:chr21:18844835-18845167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):26, 20

               
               
               Conread position:316-631
               
               
               Cow position:chr21:33264017-33263705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):76, 140

               
               
               Conread position:316-632
               
               
               Cow position:chr21:45850535-45850857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):88, 5

               
               
               Conread position:316-633
               
               
               Cow position:chr21:2679721-2679405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):87, 19

               
               
               Conread position:317-632
               
               
               Cow position:chr21:27145822-27146138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:228
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):88, 32

               
               
               Conread position:317-632
               
               
               Cow position:chr21:32237450-32237151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):97, 24

               
               
               Conread position:318-626
               
               
               Cow position:chr21:42540049-42540361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):11, 91

               
               
               Conread position:318-632
               
               
               Cow position:chr21:12801576-12801893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):71, 173

               
               
               Conread position:318-632
               
               
               Cow position:chr21:30990116-30990415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):65, 90

               
               
               Conread position:319-632
               
               
               Cow position:chr21:7581735-7582056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):86, 163

               
               
               Conread position:319-632
               
               
               Cow position:chr21:28191202-28190882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):97, 131

               
               
               Conread position:319-643
               
               
               Cow position:chr21:46264340-46264016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):83, 116

               
               
               Conread position:320-631
               
               
               Cow position:chr21:26647847-26648151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):146, 29

               
               
               Conread position:320-632
               
               
               Cow position:chr21:5153789-5153471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):85, 29

               
               
               Conread position:320-632
               
               
               Cow position:chr21:44671913-44671607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):42, 77

               
               
               Conread position:320-632
               
               
               Cow position:chr21:45920890-45921205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:210
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):88, 21

               
               
               Conread position:321-630
               
               
               Cow position:chr21:8125637-8125944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:216
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):88, 130

               
               
               Conread position:321-630
               
               
               Cow position:chr21:28626405-28626094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):95, 76

               
               
               Conread position:321-632
               
               
               Cow position:chr21:27341428-27341743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):88, 28

               
               
               Conread position:323-562
               
               
               Cow position:chr21:36910096-36909858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:166
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):91, 18

               
               
               Conread position:323-601
               
               
               Cow position:chr21:25628747-25629027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):84, 20

               
               
               Conread position:323-624
               
               
               Cow position:chr21:28924274-28923978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):85, 18

               
               
               Conread position:323-629
               
               
               Cow position:chr21:42007297-42007603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):84, 18

               
               
               Conread position:323-630
               
               
               Cow position:chr21:33563168-33562868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:222
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):91, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr21:10001240-10000934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:228
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):85, 26

               
               
               Conread position:323-632
               
               
               Cow position:chr21:26245079-26244785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):91, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr21:28429609-28429303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):64, 25

               
               
               Conread position:323-633
               
               
               Cow position:chr21:18929861-18929550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):84, 27

               
               
               Conread position:323-633
               
               
               Cow position:chr21:21982970-21982659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):84, 27

               
               
               Conread position:323-637
               
               
               Cow position:chr21:41597976-41597665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):91, 26

               
               
               Conread position:324-645
               
               
               Cow position:chr21:396031-395716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:223
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):79, 17

               
               
               Conread position:325-608
               
               
               Cow position:chr21:36789959-36789671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):82, 202

               
               
               Conread position:325-619
               
               
               Cow position:chr21:42384671-42384372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):90, 16

               
               
               Conread position:325-626
               
               
               Cow position:chr21:9028779-9028480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):129, 26

               
               
               Conread position:325-627
               
               
               Cow position:chr21:8549843-8549536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):78, 20

               
               
               Conread position:325-646
               
               
               Cow position:chr21:16696536-16696207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):106, 26

               
               
               Conread position:325-650
               
               
               Cow position:chr21:42413934-42414267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):89, 16

               
               
               Conread position:327-632
               
               
               Cow position:chr21:4998334-4998633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):87, 22

               
               
               Conread position:328-603
               
               
               Cow position:chr21:46551941-46552217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):5, 117

               
               
               Conread position:328-628
               
               
               Cow position:chr21:35997332-35997031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):79, 39

               
               
               Conread position:328-632
               
               
               Cow position:chr21:13365503-13365198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:218
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):75, 123

               
               
               Conread position:328-632
               
               
               Cow position:chr21:23800967-23801268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):80, 137

               
               
               Conread position:329-624
               
               
               Cow position:chr21:19767013-19766716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:204
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):85, 28

               
               
               Conread position:333-632
               
               
               Cow position:chr21:20044609-20044920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):73, 16

               
               
               Conread position:333-632
               
               
               Cow position:chr21:39401745-39401448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):81, 8

               
               
               Conread position:334-631
               
               
               Cow position:chr21:10151959-10151649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):72, 7

               
               
               Conread position:335-630
               
               
               Cow position:chr21:45330453-45330752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:205
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):163, 96

               
               
               Conread position:335-632
               
               
               Cow position:chr21:19363306-19363610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):48, 11

               
               
               Conread position:337-632
               
               
               Cow position:chr21:15611292-15611005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):127, 66

               
               
               Conread position:340-632
               
               
               Cow position:chr21:34390826-34391117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:213
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):63, 112

               
               
               Conread position:346-626
               
               
               Cow position:chr21:11251012-11250725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):101, 51

               
               
               Conread position:350-632
               
               
               Cow position:chr21:4904828-4905119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):72, 116

               
               
               Conread position:351-632
               
               
               Cow position:chr21:4080486-4080206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):149, 56

               
               
               Conread position:351-633
               
               
               Cow position:chr21:13738691-13738420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):242, 52

               
               
               Conread position:352-605
               
               
               Cow position:chr21:2260229-2260473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):24, 12

               
               
               Conread position:352-632
               
               
               Cow position:chr21:8618401-8618128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):146, 57

               
               
               Conread position:352-632
               
               
               Cow position:chr21:35897489-35897772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):51, 76

               
               
               Conread position:356-631
               
               
               Cow position:chr21:18828169-18828455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):50, 177

               
               
               Conread position:356-632
               
               
               Cow position:chr21:724752-725038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):49, 38

               
               
               Conread position:358-632
               
               
               Cow position:chr21:24888129-24887862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):56, 9

               
               
               Conread position:358-632
               
               
               Cow position:chr21:40786808-40786524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):47, 19

               
               
               Conread position:359-567
               
               
               Cow position:chr21:33359913-33360115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):139, 14

               
               
               Conread position:360-632
               
               
               Cow position:chr21:3813361-3813629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):172, 50

               
               
               Conread position:361-632
               
               
               Cow position:chr21:13127971-13128240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):52, 31

               
               
               Conread position:361-632
               
               
               Cow position:chr21:33729558-33729288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):53, 46

               
               
               Conread position:361-632
               
               
               Cow position:chr21:44515392-44515128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):49, 94

               
               
               Conread position:361-643
               
               
               Cow position:chr21:43357128-43357421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):61, 124

               
               
               Conread position:362-632
               
               
               Cow position:chr21:24642648-24642372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):5, 27

               
               
               Conread position:364-632
               
               
               Cow position:chr21:11456684-11456956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):41, 105

               
               
               Conread position:365-632
               
               
               Cow position:chr21:36162835-36163109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):40, 98

               
               
               Conread position:366-631
               
               
               Cow position:chr21:5636597-5636866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):42, 59

               
               
               Conread position:367-609
               
               
               Cow position:chr21:18415174-18414926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):40, 67

               
               
               Conread position:367-637
               
               
               Cow position:chr21:10727399-10727129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):41, 93

               
               
               Conread position:369-633
               
               
               Cow position:chr21:13489766-13489495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):39, 88

               
               
               Conread position:371-632
               
               
               Cow position:chr21:24607504-24607239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:188
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):43, 36

               
               
               Conread position:373-625
               
               
               Cow position:chr21:6102149-6102399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):41, 19

               
               
               Conread position:373-643
               
               
               Cow position:chr21:24222421-24222698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):35, 86

               
               
               Conread position:382-632
               
               
               Cow position:chr21:16187703-16187952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):12, 59

               
               
               Conread position:384-632
               
               
               Cow position:chr21:32536082-32535830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):24, 82

               
               
               Conread position:384-632
               
               
               Cow position:chr21:45439131-45439396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):20, 88

               
               
               Conread position:386-632
               
               
               Cow position:chr21:3380975-3381228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):28, 21

               
               
               Conread position:391-631
               
               
               Cow position:chr21:20925409-20925652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 69

               
               
               Conread position:394-632
               
               
               Cow position:chr21:12960807-12961049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:399-632
               
               
               Cow position:chr21:17175235-17174998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):27, 54

               
               
               Conread position:402-632
               
               
               Cow position:chr21:8985635-8985403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):55, 168

               
               
               Conread position:402-632
               
               
               Cow position:chr21:13898271-13898042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):98, 182

               
               
               Conread position:402-632
               
               
               Cow position:chr21:47802176-47802406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):156, 74

               
               
               Conread position:408-632
               
               
               Cow position:chr21:28617670-28617444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:165
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):14, 50

               
               
               Conread position:409-629
               
               
               Cow position:chr21:42913665-42913889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):13, 52

               
               
               Conread position:411-630
               
               
               Cow position:chr21:39450087-39450313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):84, 47

               
               
               Conread position:412-631
               
               
               Cow position:chr21:2785703-2785925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):82, 36

               
               
               Conread position:412-632
               
               
               Cow position:chr21:18041774-18041989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):77, 46

               
               
               Conread position:413-595
               
               
               Cow position:chr21:9979898-9980073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:413-597
               
               
               Cow position:chr21:4568357-4568174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):76, 35

               
               
               Conread position:420-632
               
               
               Cow position:chr21:36793960-36793746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:421-632
               
               
               Cow position:chr21:911902-912113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):68, 29

               
               
               Conread position:440-632
               
               
               Cow position:chr21:37361428-37361614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):58, 132

               
               
               Conread position:443-632
               
               
               Cow position:chr21:28882179-28881996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):55, 15

               
               
               Conread position:443-632
               
               
               Cow position:chr21:40058850-40058659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):27, 15

               
               
               Conread position:444-632
               
               
               Cow position:chr21:27743791-27743596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):54, 185

               
               
               Conread position:446-632
               
               
               Cow position:chr21:1464273-1464082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:458-623
               
               
               Cow position:chr21:39809924-39809762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):41, 66

               
               
               Conread position:458-631
               
               
               Cow position:chr21:21480152-21480328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):13, 22

               
               
               Conread position:458-632
               
               
               Cow position:chr21:394049-393875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):128, 40

               
               
               Conread position:458-632
               
               
               Cow position:chr21:18494999-18494819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:458-632
               
               
               Cow position:chr21:48484417-48484590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):40, 113

               
               
               Conread position:458-633
               
               
               Cow position:chr21:42190145-42190316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):40, 109

               
               
               Conread position:459-630
               
               
               Cow position:chr21:31277849-31277674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:463-632
               
               
               Cow position:chr21:9998692-9998867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):52, 155

               
               
               Conread position:470-624
               
               
               Cow position:chr21:12640356-12640195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:470-645
               
               
               Cow position:chr21:4189854-4189675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:470-645
               
               
               Cow position:chr21:34659052-34658875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):26, 100

               
               
               Conread position:471-645
               
               
               Cow position:chr21:33419706-33419874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):69, 87

               
               
               Conread position:472-632
               
               
               Cow position:chr21:11706729-11706898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:481-632
               
               
               Cow position:chr21:18935767-18935611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:492-632
               
               
               Cow position:chr21:31676493-31676352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):53, 115

               
               
               Conread position:493-631
               
               
               Cow position:chr21:4795219-4795080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):91, 51

               
               
               Conread position:493-632
               
               
               Cow position:chr21:13488515-13488373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):91, 75

               
               
               Conread position:493-632
               
               
               Cow position:chr21:33210195-33210052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:493-632
               
               
               Cow position:chr21:42348681-42348824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:494-632
               
               
               Cow position:chr21:48107870-48108009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:495-621
               
               
               Cow position:chr21:31511277-31511154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:495-621
               
               
               Cow position:chr21:35569390-35569512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:98
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:495-624
               
               
               Cow position:chr21:7132470-7132601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):91, 58

               
               
               Conread position:495-627
               
               
               Cow position:chr21:5344649-5344513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):48, 61

               
               
               Conread position:495-629
               
               
               Cow position:chr21:5566991-5566847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):48, 65

               
               
               Conread position:495-631
               
               
               Cow position:chr21:42024113-42023979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr21:12617128-12616993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr21:13163882-13163744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):48, 78

               
               
               Conread position:495-632
               
               
               Cow position:chr21:13303811-13303673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):44, 81

               
               
               Conread position:495-632
               
               
               Cow position:chr21:27624700-27624566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):43, 50

               
               
               Conread position:495-632
               
               
               Cow position:chr21:28443383-28443524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr21:28512520-28512386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr21:45375613-45375469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):80, 47

               
               
               Conread position:495-633
               
               
               Cow position:chr21:4268867-4268726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:495-645
               
               
               Cow position:chr21:6764705-6764861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):48, 127

               
               
               Conread position:496-624
               
               
               Cow position:chr21:21216153-21216279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:501-632
               
               
               Cow position:chr21:13763606-13763476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):34, 42

               
               
               Conread position:503-632
               
               
               Cow position:chr21:31159246-31159110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:105
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:503-645
               
               
               Cow position:chr21:36642890-36642748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):30, 62

               
               
               Conread position:504-632
               
               
               Cow position:chr21:14126030-14125899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:505-632
               
               
               Cow position:chr21:24131061-24130934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:98
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:506-632
               
               
               Cow position:chr21:38692166-38692043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:506-632
               
               
               Cow position:chr21:43631219-43631349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:509-631
               
               
               Cow position:chr21:34254302-34254427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:512-632
               
               
               Cow position:chr21:13256779-13256659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:514-632
               
               
               Cow position:chr21:35897454-35897336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:518-632
               
               
               Cow position:chr21:28029369-28029251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:97
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:522-645
               
               
               Cow position:chr21:28907683-28907803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:99
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:526-629
               
               
               Cow position:chr21:17282665-17282560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:90
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:529-632
               
               
               Cow position:chr21:31278735-31278633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:87
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):39, 44

               
               
               Conread position:530-632
               
               
               Cow position:chr21:20548955-20549057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:83
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:152-405
               
               
               Cow position:chr22:36209533-36209270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):85, 197

               
               
               Conread position:177-632
               
               
               Cow position:chr22:3325838-3325368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 170

               
               
               Conread position:196-624
               
               
               Cow position:chr22:19652758-19653190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:269
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):116, 64

               
               
               Conread position:198-389
               
               
               Cow position:chr22:37702205-37702011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):39, 72

               
               
               Conread position:198-625
               
               
               Cow position:chr22:18025323-18025763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:286
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):25, 163

               
               
               Conread position:199-631
               
               
               Cow position:chr22:37202077-37201645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 147

               
               
               Conread position:200-628
               
               
               Cow position:chr22:28357253-28356826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:292
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):109, 24

               
               
               Conread position:200-632
               
               
               Cow position:chr22:25247136-25246696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 32

               
               
               Conread position:200-632
               
               
               Cow position:chr22:42685111-42684687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 107

               
               
               Conread position:201-632
               
               
               Cow position:chr22:28371157-28370733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:276
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):259, 31

               
               
               Conread position:203-460
               
               
               Cow position:chr22:17359700-17359432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):21, 127

               
               
               Conread position:204-631
               
               
               Cow position:chr22:26183965-26184373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:294
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):202, 22

               
               
               Conread position:205-631
               
               
               Cow position:chr22:36539434-36539885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 145

               
               
               Conread position:206-632
               
               
               Cow position:chr22:43398222-43397804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 28

               
               
               Conread position:207-451
               
               
               Cow position:chr22:4560590-4560844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):111, 24

               
               
               Conread position:207-624
               
               
               Cow position:chr22:2095779-2095344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:291
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):24, 155

               
               
               Conread position:208-631
               
               
               Cow position:chr22:6720857-6721279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:284
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):26, 243

               
               
               Conread position:208-632
               
               
               Cow position:chr22:29642333-29641897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:304
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):28, 143

               
               
               Conread position:209-438
               
               
               Cow position:chr22:8540096-8539867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):27, 147

               
               
               Conread position:209-448
               
               
               Cow position:chr22:4164194-4163949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):106, 18

               
               
               Conread position:209-614
               
               
               Cow position:chr22:44410932-44410541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:272
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):98, 17

               
               
               Conread position:209-632
               
               
               Cow position:chr22:12681580-12682006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:299
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):43, 18

               
               
               Conread position:210-627
               
               
               Cow position:chr22:29954796-29955207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:288
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):35, 91

               
               
               Conread position:211-405
               
               
               Cow position:chr22:17120670-17120467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):107, 149

               
               
               Conread position:211-635
               
               
               Cow position:chr22:12313638-12313203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 134

               
               
               Conread position:212-326
               
               
               Cow position:chr22:19306119-19306003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:92
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:212-406
               
               
               Cow position:chr22:18545502-18545305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):109, 94

               
               
               Conread position:212-627
               
               
               Cow position:chr22:32327016-32326593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:291
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):25, 144

               
               
               Conread position:212-632
               
               
               Cow position:chr22:14178622-14179045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:291
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):95, 20

               
               
               Conread position:212-632
               
               
               Cow position:chr22:22860693-22861125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 147

               
               
               Conread position:212-633
               
               
               Cow position:chr22:39507825-39508248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:285
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):81, 20

               
               
               Conread position:213-324
               
               
               Cow position:chr22:35665660-35665769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:91
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):106, 15

               
               
               Conread position:213-405
               
               
               Cow position:chr22:10468723-10468528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):110, 17

               
               
               Conread position:213-438
               
               
               Cow position:chr22:26804037-26803798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:213-512
               
               
               Cow position:chr22:25809067-25809363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):100, 14

               
               
               Conread position:213-632
               
               
               Cow position:chr22:2011012-2010586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:278
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):7, 82

               
               
               Conread position:214-419
               
               
               Cow position:chr22:26112579-26112369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):118, 17

               
               
               Conread position:214-420
               
               
               Cow position:chr22:43573164-43572943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):23, 151

               
               
               Conread position:214-422
               
               
               Cow position:chr22:35627561-35627351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):105, 14

               
               
               Conread position:214-630
               
               
               Cow position:chr22:13866882-13866434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 145

               
               
               Conread position:214-632
               
               
               Cow position:chr22:40349557-40349137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:285
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):23, 183

               
               
               Conread position:215-386
               
               
               Cow position:chr22:11790197-11790019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):103, 20

               
               
               Conread position:215-404
               
               
               Cow position:chr22:33522663-33522862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):18, 146

               
               
               Conread position:215-408
               
               
               Cow position:chr22:15050568-15050375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):184, 127

               
               
               Conread position:215-416
               
               
               Cow position:chr22:26268066-26267854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):17, 138

               
               
               Conread position:215-507
               
               
               Cow position:chr22:25690065-25690369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:208
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):94, 129

               
               
               Conread position:215-536
               
               
               Cow position:chr22:12829396-12829728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):26, 78

               
               
               Conread position:215-593
               
               
               Cow position:chr22:32698974-32698586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 16

               
               
               Conread position:215-616
               
               
               Cow position:chr22:22908383-22907996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:275
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):22, 44

               
               
               Conread position:215-632
               
               
               Cow position:chr22:1485083-1484649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:291
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):16, 150

               
               
               Conread position:215-632
               
               
               Cow position:chr22:4075671-4076112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 86

               
               
               Conread position:215-632
               
               
               Cow position:chr22:18838462-18838037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:276
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):92, 21

               
               
               Conread position:215-632
               
               
               Cow position:chr22:26134006-26134448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:291
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):21, 148

               
               
               Conread position:216-326
               
               
               Cow position:chr22:33373456-33373347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:91
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):16, 51

               
               
               Conread position:216-385
               
               
               Cow position:chr22:1645520-1645694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):20, 140

               
               
               Conread position:216-395
               
               
               Cow position:chr22:1552109-1551928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):22, 79

               
               
               Conread position:216-403
               
               
               Cow position:chr22:20035032-20034848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):20, 50

               
               
               Conread position:216-404
               
               
               Cow position:chr22:12673120-12673317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):103, 143

               
               
               Conread position:216-405
               
               
               Cow position:chr22:25312727-25312526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):61, 146

               
               
               Conread position:216-412
               
               
               Cow position:chr22:1973606-1973810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):21, 12

               
               
               Conread position:216-419
               
               
               Cow position:chr22:19413822-19414034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):103, 143

               
               
               Conread position:216-420
               
               
               Cow position:chr22:1045973-1046192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):16, 147

               
               
               Conread position:216-421
               
               
               Cow position:chr22:12777172-12777376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):197, 124

               
               
               Conread position:216-421
               
               
               Cow position:chr22:14488151-14487934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):20, 135

               
               
               Conread position:216-423
               
               
               Cow position:chr22:5375607-5375393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):109, 142

               
               
               Conread position:216-436
               
               
               Cow position:chr22:45375147-45374923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):14, 171

               
               
               Conread position:216-438
               
               
               Cow position:chr22:16840582-16840817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):112, 147

               
               
               Conread position:216-438
               
               
               Cow position:chr22:28672348-28672125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):12, 34

               
               
               Conread position:216-445
               
               
               Cow position:chr22:43704654-43704892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):21, 142

               
               
               Conread position:216-452
               
               
               Cow position:chr22:6289287-6289536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:180
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):103, 145

               
               
               Conread position:216-456
               
               
               Cow position:chr22:7496895-7497148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:180
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):100, 144

               
               
               Conread position:216-538
               
               
               Cow position:chr22:12830235-12830562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):108, 16

               
               
               Conread position:216-556
               
               
               Cow position:chr22:27681934-27681578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 15

               
               
               Conread position:216-578
               
               
               Cow position:chr22:15618822-15618455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:262
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):16, 146

               
               
               Conread position:216-591
               
               
               Cow position:chr22:36762247-36761868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):97, 15

               
               
               Conread position:216-615
               
               
               Cow position:chr22:12800890-12800467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:274
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:216-624
               
               
               Cow position:chr22:24732349-24732752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:272
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):103, 50

               
               
               Conread position:216-624
               
               
               Cow position:chr22:36562814-36563228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:280
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):82, 50

               
               
               Conread position:216-627
               
               
               Cow position:chr22:23115095-23115513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:271
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):99, 35

               
               
               Conread position:216-627
               
               
               Cow position:chr22:34895168-34894764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 41

               
               
               Conread position:216-631
               
               
               Cow position:chr22:34930534-34930960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:281
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):17, 112

               
               
               Conread position:216-632
               
               
               Cow position:chr22:1309525-1309941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 46

               
               
               Conread position:216-632
               
               
               Cow position:chr22:4108513-4108952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:290
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):17, 147

               
               
               Conread position:216-632
               
               
               Cow position:chr22:6494386-6493957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:287
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):83, 16

               
               
               Conread position:216-632
               
               
               Cow position:chr22:6622040-6622459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:289
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):103, 20

               
               
               Conread position:216-632
               
               
               Cow position:chr22:7082240-7081812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:286
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):46, 16

               
               
               Conread position:216-632
               
               
               Cow position:chr22:10122579-10122175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:273
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):286, 16

               
               
               Conread position:216-632
               
               
               Cow position:chr22:11696981-11697421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:298
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):20, 49

               
               
               Conread position:216-632
               
               
               Cow position:chr22:15490868-15490446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 134

               
               
               Conread position:216-632
               
               
               Cow position:chr22:22613311-22612899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:276
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):83, 15

               
               
               Conread position:216-632
               
               
               Cow position:chr22:27826062-27825623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:299
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):15, 154

               
               
               Conread position:216-632
               
               
               Cow position:chr22:36560439-36560874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:292
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):69, 14

               
               
               Conread position:216-632
               
               
               Cow position:chr22:38939736-38940162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 96

               
               
               Conread position:216-632
               
               
               Cow position:chr22:40387359-40386959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:296
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):97, 12

               
               
               Conread position:216-632
               
               
               Cow position:chr22:46665283-46665715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:286
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):19, 127

               
               
               Conread position:216-632
               
               
               Cow position:chr22:47741628-47741203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:269
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):110, 74

               
               
               Conread position:216-633
               
               
               Cow position:chr22:1289318-1289733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:282
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):92, 157

               
               
               Conread position:216-645
               
               
               Cow position:chr22:14142913-14143332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:286
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):105, 20

               
               
               Conread position:216-645
               
               
               Cow position:chr22:16533282-16532854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 15

               
               
               Conread position:217-326
               
               
               Cow position:chr22:28290554-28290445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:90
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:217-394
               
               
               Cow position:chr22:9075619-9075435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):51, 11

               
               
               Conread position:217-403
               
               
               Cow position:chr22:23630143-23630332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):10, 52

               
               
               Conread position:217-403
               
               
               Cow position:chr22:34907482-34907295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):61, 108

               
               
               Conread position:217-404
               
               
               Cow position:chr22:39471941-39472140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:217-406
               
               
               Cow position:chr22:1959450-1959252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):20, 143

               
               
               Conread position:217-406
               
               
               Cow position:chr22:3937269-3937076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):101, 13

               
               
               Conread position:217-406
               
               
               Cow position:chr22:10660089-10659897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):20, 135

               
               
               Conread position:217-419
               
               
               Cow position:chr22:11049522-11049320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):94, 14

               
               
               Conread position:217-597
               
               
               Cow position:chr22:4162372-4162767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:251
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):98, 142

               
               
               Conread position:217-605
               
               
               Cow position:chr22:16291722-16292107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):197, 82

               
               
               Conread position:217-631
               
               
               Cow position:chr22:24066035-24066446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:266
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):96, 12

               
               
               Conread position:217-632
               
               
               Cow position:chr22:3987733-3987299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:300
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):20, 11

               
               
               Conread position:217-632
               
               
               Cow position:chr22:6149177-6149599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 134

               
               
               Conread position:217-632
               
               
               Cow position:chr22:6754052-6754467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 133

               
               
               Conread position:217-632
               
               
               Cow position:chr22:10983575-10983131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:297
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):22, 50

               
               
               Conread position:217-632
               
               
               Cow position:chr22:11131077-11130658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 11

               
               
               Conread position:217-632
               
               
               Cow position:chr22:13687903-13688325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:284
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):118, 44

               
               
               Conread position:217-632
               
               
               Cow position:chr22:13769684-13769266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:279
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):15, 32

               
               
               Conread position:217-632
               
               
               Cow position:chr22:15950178-15950590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:277
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):20, 59

               
               
               Conread position:217-632
               
               
               Cow position:chr22:21568202-21567786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:289
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):137, 52

               
               
               Conread position:217-632
               
               
               Cow position:chr22:33447867-33448288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 142

               
               
               Conread position:217-632
               
               
               Cow position:chr22:41970947-41971370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:283
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):99, 25

               
               
               Conread position:217-632
               
               
               Cow position:chr22:45271783-45271368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:269
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):52, 15

               
               
               Conread position:217-633
               
               
               Cow position:chr22:23180835-23181250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 71

               
               
               Conread position:218-389
               
               
               Cow position:chr22:21905678-21905504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):48, 97

               
               
               Conread position:218-399
               
               
               Cow position:chr22:17107765-17107588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):18, 111

               
               
               Conread position:218-403
               
               
               Cow position:chr22:3540910-3541099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):101, 45

               
               
               Conread position:218-405
               
               
               Cow position:chr22:1991811-1991616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):38, 13

               
               
               Conread position:218-405
               
               
               Cow position:chr22:14601965-14602155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):95, 136

               
               
               Conread position:218-405
               
               
               Cow position:chr22:18442535-18442732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):98, 143

               
               
               Conread position:218-412
               
               
               Cow position:chr22:27401941-27401748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):84, 11

               
               
               Conread position:218-412
               
               
               Cow position:chr22:30687227-30687037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:218-420
               
               
               Cow position:chr22:1588503-1588296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):97, 17

               
               
               Conread position:218-420
               
               
               Cow position:chr22:26189079-26188872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):91, 10

               
               
               Conread position:218-453
               
               
               Cow position:chr22:35215759-35215512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):101, 13

               
               
               Conread position:218-512
               
               
               Cow position:chr22:25254386-25254082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):21, 131

               
               
               Conread position:218-516
               
               
               Cow position:chr22:7140856-7140547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):56, 13

               
               
               Conread position:218-548
               
               
               Cow position:chr22:12929067-12929404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 141

               
               
               Conread position:218-561
               
               
               Cow position:chr22:34736058-34735726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:227
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):65, 97

               
               
               Conread position:218-567
               
               
               Cow position:chr22:36133008-36132650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):98, 148

               
               
               Conread position:218-607
               
               
               Cow position:chr22:36432764-36433158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:273
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):90, 14

               
               
               Conread position:218-629
               
               
               Cow position:chr22:22023111-22022676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:302
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):110, 16

               
               
               Conread position:218-630
               
               
               Cow position:chr22:37139635-37139233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:289
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):103, 13

               
               
               Conread position:218-632
               
               
               Cow position:chr22:59824-59393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:293
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):18, 146

               
               
               Conread position:218-632
               
               
               Cow position:chr22:4563566-4563149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:278
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):164, 88

               
               
               Conread position:218-632
               
               
               Cow position:chr22:5291066-5290630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 133

               
               
               Conread position:218-632
               
               
               Cow position:chr22:7913663-7913264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 19

               
               
               Conread position:218-632
               
               
               Cow position:chr22:10303225-10302797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:297
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):103, 51

               
               
               Conread position:218-632
               
               
               Cow position:chr22:25205754-25206183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:296
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):29, 157

               
               
               Conread position:218-632
               
               
               Cow position:chr22:37029395-37029816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:289
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):77, 46

               
               
               Conread position:218-632
               
               
               Cow position:chr22:40120665-40121091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 17

               
               
               Conread position:218-632
               
               
               Cow position:chr22:41044697-41045127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:305
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:218-632
               
               
               Cow position:chr22:43812231-43812631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:270
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):177, 83

               
               
               Conread position:218-633
               
               
               Cow position:chr22:25221695-25222117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 11

               
               
               Conread position:218-637
               
               
               Cow position:chr22:4357295-4356882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:278
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):16, 47

               
               
               Conread position:218-645
               
               
               Cow position:chr22:15567810-15568247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:289
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):19, 189

               
               
               Conread position:218-645
               
               
               Cow position:chr22:25236917-25237367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:308
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):18, 379

               
               
               Conread position:218-645
               
               
               Cow position:chr22:26786567-26786127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:292
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):94, 14

               
               
               Conread position:219-326
               
               
               Cow position:chr22:9983616-9983723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:86
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:219-413
               
               
               Cow position:chr22:4718315-4718120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):18, 178

               
               
               Conread position:219-420
               
               
               Cow position:chr22:14641645-14641857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):11, 133

               
               
               Conread position:219-421
               
               
               Cow position:chr22:24542571-24542361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):111, 11

               
               
               Conread position:219-438
               
               
               Cow position:chr22:23358362-23358132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):18, 48

               
               
               Conread position:219-501
               
               
               Cow position:chr22:15737437-15737154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):102, 12

               
               
               Conread position:219-580
               
               
               Cow position:chr22:33399281-33399642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:249
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):102, 13

               
               
               Conread position:219-627
               
               
               Cow position:chr22:18259426-18259020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:265
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):19, 119

               
               
               Conread position:219-631
               
               
               Cow position:chr22:864322-864730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:272
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):131, 9

               
               
               Conread position:219-632
               
               
               Cow position:chr22:1326629-1326205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 46

               
               
               Conread position:219-632
               
               
               Cow position:chr22:4993706-4994134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:288
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):17, 46

               
               
               Conread position:219-632
               
               
               Cow position:chr22:8412737-8412311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 13

               
               
               Conread position:219-632
               
               
               Cow position:chr22:10295234-10294837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:268
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):175, 9

               
               
               Conread position:219-632
               
               
               Cow position:chr22:12573414-12572990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:283
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):94, 182

               
               
               Conread position:219-632
               
               
               Cow position:chr22:23806327-23806759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:275
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):17, 142

               
               
               Conread position:219-632
               
               
               Cow position:chr22:32661725-32661299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:289
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):20, 144

               
               
               Conread position:220-332
               
               
               Cow position:chr22:44018042-44018156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:92
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:220-418
               
               
               Cow position:chr22:3430405-3430197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):11, 202

               
               
               Conread position:220-517
               
               
               Cow position:chr22:43965911-43965602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:211
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):99, 143

               
               
               Conread position:220-621
               
               
               Cow position:chr22:46626168-46626574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:274
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):51, 144

               
               
               Conread position:220-624
               
               
               Cow position:chr22:15050384-15049961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:280
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):78, 8

               
               
               Conread position:220-631
               
               
               Cow position:chr22:24583864-24584255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:273
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):89, 195

               
               
               Conread position:220-631
               
               
               Cow position:chr22:28071765-28071342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:274
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):75, 12

               
               
               Conread position:220-632
               
               
               Cow position:chr22:3301128-3301537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 139

               
               
               Conread position:220-632
               
               
               Cow position:chr22:4060739-4061156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:284
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):17, 250

               
               
               Conread position:220-632
               
               
               Cow position:chr22:14091009-14091445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:293
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):11, 144

               
               
               Conread position:221-416
               
               
               Cow position:chr22:3470497-3470292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):26, 127

               
               
               Conread position:221-419
               
               
               Cow position:chr22:9279229-9279028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):23, 68

               
               
               Conread position:221-541
               
               
               Cow position:chr22:37030318-37030643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:218
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):125, 11

               
               
               Conread position:221-585
               
               
               Cow position:chr22:40789762-40789406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:262
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):102, 20

               
               
               Conread position:221-627
               
               
               Cow position:chr22:6092456-6092851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:279
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):192, 45

               
               
               Conread position:221-631
               
               
               Cow position:chr22:5016696-5016296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 7

               
               
               Conread position:221-632
               
               
               Cow position:chr22:27819204-27818790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:283
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):92, 131

               
               
               Conread position:222-632
               
               
               Cow position:chr22:6215351-6215767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:275
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):99, 254

               
               
               Conread position:222-632
               
               
               Cow position:chr22:21746844-21746427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 121

               
               
               Conread position:222-645
               
               
               Cow position:chr22:27171064-27171484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:285
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):99, 10

               
               
               Conread position:223-632
               
               
               Cow position:chr22:16251359-16251780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:293
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):16, 134

               
               
               Conread position:224-404
               
               
               Cow position:chr22:29219697-29219887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):12, 129

               
               
               Conread position:224-622
               
               
               Cow position:chr22:30269606-30269210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 58

               
               
               Conread position:224-632
               
               
               Cow position:chr22:31870051-31870463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:292
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):103, 159

               
               
               Conread position:225-632
               
               
               Cow position:chr22:14844747-14844357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):183, 30

               
               
               Conread position:226-625
               
               
               Cow position:chr22:17126649-17126248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:266
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):95, 126

               
               
               Conread position:226-632
               
               
               Cow position:chr22:8324450-8324032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:281
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):72, 243

               
               
               Conread position:227-393
               
               
               Cow position:chr22:4054402-4054563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:227-590
               
               
               Cow position:chr22:8090334-8090700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:243
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):94, 117

               
               
               Conread position:227-632
               
               
               Cow position:chr22:41982519-41982928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:266
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):100, 25

               
               
               Conread position:228-405
               
               
               Cow position:chr22:2704500-2704315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):8, 130

               
               
               Conread position:228-438
               
               
               Cow position:chr22:40870029-40869813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):70, 15

               
               
               Conread position:228-461
               
               
               Cow position:chr22:4156615-4156860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):10, 121

               
               
               Conread position:228-513
               
               
               Cow position:chr22:18933512-18933814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):93, 13

               
               
               Conread position:228-533
               
               
               Cow position:chr22:15914845-15915156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:221
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):8, 133

               
               
               Conread position:228-539
               
               
               Cow position:chr22:5837462-5837148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:218
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):8, 95

               
               
               Conread position:228-539
               
               
               Cow position:chr22:27828578-27828264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:218
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):7, 128

               
               
               Conread position:228-596
               
               
               Cow position:chr22:23980007-23980394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:266
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):89, 130

               
               
               Conread position:228-632
               
               
               Cow position:chr22:10162167-10161748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:273
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):68, 54

               
               
               Conread position:228-632
               
               
               Cow position:chr22:25943660-25943268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 66

               
               
               Conread position:228-632
               
               
               Cow position:chr22:27577945-27577520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:290
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):97, 239

               
               
               Conread position:228-632
               
               
               Cow position:chr22:38313273-38313677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:273
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):8, 189

               
               
               Conread position:228-632
               
               
               Cow position:chr22:39472160-39472589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 133

               
               
               Conread position:228-632
               
               
               Cow position:chr22:40048758-40048350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:281
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):65, 252

               
               
               Conread position:228-632
               
               
               Cow position:chr22:40374806-40374393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 125

               
               
               Conread position:228-632
               
               
               Cow position:chr22:45132450-45132865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:264
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):70, 51

               
               
               Conread position:228-633
               
               
               Cow position:chr22:8883211-8882810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 119

               
               
               Conread position:228-645
               
               
               Cow position:chr22:9372727-9372289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 134

               
               
               Conread position:229-420
               
               
               Cow position:chr22:35578577-35578775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):97, 128

               
               
               Conread position:229-632
               
               
               Cow position:chr22:33485426-33485816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:270
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):93, 40

               
               
               Conread position:230-610
               
               
               Cow position:chr22:30818407-30818020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):82, 106

               
               
               Conread position:231-404
               
               
               Cow position:chr22:1830240-1830066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):81, 111

               
               
               Conread position:231-632
               
               
               Cow position:chr22:3960103-3960506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:274
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):183, 68

               
               
               Conread position:232-402
               
               
               Cow position:chr22:4132773-4132595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):66, 127

               
               
               Conread position:232-405
               
               
               Cow position:chr22:2876602-2876781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):75, 115

               
               
               Conread position:232-449
               
               
               Cow position:chr22:4656850-4657074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):70, 121

               
               
               Conread position:232-449
               
               
               Cow position:chr22:5712780-5712557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):82, 31

               
               
               Conread position:232-449
               
               
               Cow position:chr22:26417476-26417252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):89, 82

               
               
               Conread position:232-451
               
               
               Cow position:chr22:42230325-42230554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):70, 127

               
               
               Conread position:232-537
               
               
               Cow position:chr22:39215416-39215733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:216
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):98, 200

               
               
               Conread position:232-562
               
               
               Cow position:chr22:1035625-1035961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):68, 32

               
               
               Conread position:232-562
               
               
               Cow position:chr22:11766852-11767193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):74, 126

               
               
               Conread position:232-562
               
               
               Cow position:chr22:15668286-15668617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:222
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):16, 107

               
               
               Conread position:232-593
               
               
               Cow position:chr22:964977-965349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):84, 19

               
               
               Conread position:232-598
               
               
               Cow position:chr22:4583757-4583381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 74

               
               
               Conread position:232-615
               
               
               Cow position:chr22:12316004-12315615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 62

               
               
               Conread position:232-618
               
               
               Cow position:chr22:2524146-2523763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:263
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):151, 74

               
               
               Conread position:232-622
               
               
               Cow position:chr22:8397649-8398018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:250
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):262, 58

               
               
               Conread position:232-623
               
               
               Cow position:chr22:30999086-30998693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:257
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):41, 111

               
               
               Conread position:232-624
               
               
               Cow position:chr22:27322494-27322120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:275
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):82, 32

               
               
               Conread position:232-624
               
               
               Cow position:chr22:41854098-41853691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:275
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):85, 111

               
               
               Conread position:232-626
               
               
               Cow position:chr22:5616491-5616092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:268
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):72, 11

               
               
               Conread position:232-631
               
               
               Cow position:chr22:5384830-5384443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:279
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):173, 57

               
               
               Conread position:232-631
               
               
               Cow position:chr22:13286644-13286232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 115

               
               
               Conread position:232-632
               
               
               Cow position:chr22:644585-644974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 34

               
               
               Conread position:232-632
               
               
               Cow position:chr22:5595612-5596004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:286
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):92, 118

               
               
               Conread position:232-632
               
               
               Cow position:chr22:6610162-6610567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 107

               
               
               Conread position:232-632
               
               
               Cow position:chr22:7154071-7153677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:265
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):111, 79

               
               
               Conread position:232-632
               
               
               Cow position:chr22:7165164-7164741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:287
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):80, 31

               
               
               Conread position:232-632
               
               
               Cow position:chr22:7882747-7882337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:268
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):15, 61

               
               
               Conread position:232-632
               
               
               Cow position:chr22:8733150-8733536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 88

               
               
               Conread position:232-632
               
               
               Cow position:chr22:11613622-11613208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:285
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):19, 181

               
               
               Conread position:232-632
               
               
               Cow position:chr22:14690763-14691189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:297
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):65, 128

               
               
               Conread position:232-632
               
               
               Cow position:chr22:16273837-16273417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:277
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):95, 37

               
               
               Conread position:232-632
               
               
               Cow position:chr22:17949781-17950170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:273
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):37, 111

               
               
               Conread position:232-632
               
               
               Cow position:chr22:18196706-18196297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:287
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):95, 26

               
               
               Conread position:232-632
               
               
               Cow position:chr22:18926552-18926138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:284
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):89, 23

               
               
               Conread position:232-632
               
               
               Cow position:chr22:19341390-19340986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:276
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):81, 118

               
               
               Conread position:232-632
               
               
               Cow position:chr22:19787505-19787893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:242
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):264, 67

               
               
               Conread position:232-632
               
               
               Cow position:chr22:25742770-25743165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:278
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):118, 31

               
               
               Conread position:232-632
               
               
               Cow position:chr22:26339960-26339547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 243

               
               
               Conread position:232-632
               
               
               Cow position:chr22:30699361-30698966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:279
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):176, 75

               
               
               Conread position:232-632
               
               
               Cow position:chr22:38438962-38439371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:264
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):83, 31

               
               
               Conread position:232-632
               
               
               Cow position:chr22:42612637-42612244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:262
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):183, 67

               
               
               Conread position:232-633
               
               
               Cow position:chr22:9977990-9977605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:263
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):182, 82

               
               
               Conread position:232-644
               
               
               Cow position:chr22:10338910-10339338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 235

               
               
               Conread position:232-645
               
               
               Cow position:chr22:17852442-17852849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:277
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):72, 108

               
               
               Conread position:233-588
               
               
               Cow position:chr22:19047637-19047987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):174, 69

               
               
               Conread position:233-621
               
               
               Cow position:chr22:27274494-27274895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:278
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):87, 239

               
               
               Conread position:233-632
               
               
               Cow position:chr22:534684-534280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 60

               
               
               Conread position:233-632
               
               
               Cow position:chr22:14372362-14371954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:286
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):88, 111

               
               
               Conread position:233-632
               
               
               Cow position:chr22:25715181-25714797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:255
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):182, 60

               
               
               Conread position:234-622
               
               
               Cow position:chr22:13735087-13735468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:264
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):89, 31

               
               
               Conread position:234-632
               
               
               Cow position:chr22:9127592-9127189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:285
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):82, 32

               
               
               Conread position:234-632
               
               
               Cow position:chr22:34726869-34726459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:286
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):81, 29

               
               
               Conread position:234-645
               
               
               Cow position:chr22:34441439-34441860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:279
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):76, 9

               
               
               Conread position:235-593
               
               
               Cow position:chr22:32480274-32480653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:251
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):90, 125

               
               
               Conread position:235-622
               
               
               Cow position:chr22:41898256-41898652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:258
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):64, 136

               
               
               Conread position:235-632
               
               
               Cow position:chr22:23804792-23805195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 36

               
               
               Conread position:235-650
               
               
               Cow position:chr22:46610584-46611012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:291
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):84, 117

               
               
               Conread position:236-420
               
               
               Cow position:chr22:8287372-8287187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):77, 108

               
               
               Conread position:236-438
               
               
               Cow position:chr22:23675781-23675983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):71, 178

               
               
               Conread position:236-449
               
               
               Cow position:chr22:16806779-16806564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):59, 107

               
               
               Conread position:236-611
               
               
               Cow position:chr22:17152880-17152485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:261
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):66, 188

               
               
               Conread position:236-612
               
               
               Cow position:chr22:12803196-12803578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:236
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):77, 233

               
               
               Conread position:236-628
               
               
               Cow position:chr22:25477220-25476854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:265
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):184, 63

               
               
               Conread position:236-632
               
               
               Cow position:chr22:4535130-4535540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:274
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):73, 28

               
               
               Conread position:236-632
               
               
               Cow position:chr22:12382080-12381686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:236
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):94, 82

               
               
               Conread position:236-632
               
               
               Cow position:chr22:16621384-16620960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:293
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):62, 238

               
               
               Conread position:236-632
               
               
               Cow position:chr22:25361669-25361277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:264
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):84, 57

               
               
               Conread position:237-556
               
               
               Cow position:chr22:530387-530714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:215
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):61, 110

               
               
               Conread position:237-627
               
               
               Cow position:chr22:30471507-30471896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:264
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):74, 110

               
               
               Conread position:237-632
               
               
               Cow position:chr22:6600484-6600899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:275
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):66, 29

               
               
               Conread position:238-607
               
               
               Cow position:chr22:10981575-10981198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:253
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):77, 119

               
               
               Conread position:239-632
               
               
               Cow position:chr22:13669978-13670383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:284
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):91, 194

               
               
               Conread position:241-420
               
               
               Cow position:chr22:16724501-16724685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):80, 30

               
               
               Conread position:242-632
               
               
               Cow position:chr22:10684912-10685301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:260
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):27, 58

               
               
               Conread position:242-632
               
               
               Cow position:chr22:21012571-21012177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:273
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):45, 28

               
               
               Conread position:242-632
               
               
               Cow position:chr22:21890180-21890573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:269
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):14, 22

               
               
               Conread position:242-632
               
               
               Cow position:chr22:40072148-40071756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:257
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):154, 21

               
               
               Conread position:243-593
               
               
               Cow position:chr22:12389287-12388917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 116

               
               
               Conread position:243-610
               
               
               Cow position:chr22:20331800-20332180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:249
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):78, 28

               
               
               Conread position:243-632
               
               
               Cow position:chr22:20627018-20626628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 100

               
               
               Conread position:243-632
               
               
               Cow position:chr22:30094428-30094032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:251
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):113, 102

               
               
               Conread position:243-633
               
               
               Cow position:chr22:27224293-27223919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:258
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):165, 21

               
               
               Conread position:245-632
               
               
               Cow position:chr22:28146865-28146471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:267
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):97, 269

               
               
               Conread position:245-632
               
               
               Cow position:chr22:31646666-31646281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:257
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):156, 32

               
               
               Conread position:246-527
               
               
               Cow position:chr22:9597403-9597688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:194
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):66, 96

               
               
               Conread position:246-608
               
               
               Cow position:chr22:590501-590146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):140, 46

               
               
               Conread position:246-614
               
               
               Cow position:chr22:1849257-1848869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:268
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):75, 102

               
               
               Conread position:246-620
               
               
               Cow position:chr22:14378510-14378885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:270
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):73, 116

               
               
               Conread position:246-627
               
               
               Cow position:chr22:41829053-41829438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:266
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):64, 121

               
               
               Conread position:246-631
               
               
               Cow position:chr22:28057860-28058256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:279
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):49, 33

               
               
               Conread position:246-631
               
               
               Cow position:chr22:29014066-29013665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:264
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):75, 116

               
               
               Conread position:246-632
               
               
               Cow position:chr22:10631570-10631159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:268
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):56, 43

               
               
               Conread position:246-632
               
               
               Cow position:chr22:30484086-30483699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:269
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):168, 53

               
               
               Conread position:247-424
               
               
               Cow position:chr22:6793699-6793876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):70, 94

               
               
               Conread position:248-631
               
               
               Cow position:chr22:3534111-3533733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:262
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):48, 52

               
               
               Conread position:248-632
               
               
               Cow position:chr22:2404060-2403659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:255
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:248-632
               
               
               Cow position:chr22:20862584-20862962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:265
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):57, 44

               
               
               Conread position:249-630
               
               
               Cow position:chr22:4989989-4990383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:251
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):78, 214

               
               
               Conread position:249-632
               
               
               Cow position:chr22:4651340-4650968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:251
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):103, 35

               
               
               Conread position:249-632
               
               
               Cow position:chr22:45513345-45513734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:284
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):59, 104

               
               
               Conread position:251-632
               
               
               Cow position:chr22:14365775-14366167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:259
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):44, 205

               
               
               Conread position:252-632
               
               
               Cow position:chr22:30515446-30515039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:279
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):5, 135

               
               
               Conread position:254-614
               
               
               Cow position:chr22:15024935-15025299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 103

               
               
               Conread position:255-632
               
               
               Cow position:chr22:38930331-38930727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:266
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):69, 105

               
               
               Conread position:255-632
               
               
               Cow position:chr22:47556026-47555631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:259
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):75, 163

               
               
               Conread position:260-624
               
               
               Cow position:chr22:766128-766484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:241
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):49, 95

               
               
               Conread position:266-631
               
               
               Cow position:chr22:15039022-15039397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:244
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):29, 147

               
               
               Conread position:272-631
               
               
               Cow position:chr22:4119407-4119780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:236
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):54, 204

               
               
               Conread position:273-632
               
               
               Cow position:chr22:27581589-27581232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:241
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):40, 70

               
               
               Conread position:275-632
               
               
               Cow position:chr22:4988408-4988772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:243
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):81, 55

               
               
               Conread position:279-632
               
               
               Cow position:chr22:1591167-1590807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:230
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):42, 33

               
               
               Conread position:284-631
               
               
               Cow position:chr22:38981025-38980692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):9, 38

               
               
               Conread position:298-632
               
               
               Cow position:chr22:37324666-37324333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 44

               
               
               Conread position:298-636
               
               
               Cow position:chr22:34606714-34606373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:240
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):13, 44

               
               
               Conread position:299-615
               
               
               Cow position:chr22:21530237-21530547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):90, 42

               
               
               Conread position:299-631
               
               
               Cow position:chr22:2216932-2216612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):11, 37

               
               
               Conread position:299-632
               
               
               Cow position:chr22:1609640-1609969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):35, 111

               
               
               Conread position:299-632
               
               
               Cow position:chr22:3965306-3964972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):109, 28

               
               
               Conread position:299-632
               
               
               Cow position:chr22:12967946-12968283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:230
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):25, 43

               
               
               Conread position:299-632
               
               
               Cow position:chr22:13841262-13840924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:229
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):10, 43

               
               
               Conread position:299-632
               
               
               Cow position:chr22:15090865-15090527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:233
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):24, 6

               
               
               Conread position:300-619
               
               
               Cow position:chr22:877636-877311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):114, 41

               
               
               Conread position:301-632
               
               
               Cow position:chr22:28665401-28665056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):49, 25

               
               
               Conread position:303-589
               
               
               Cow position:chr22:27741008-27740718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):102, 38

               
               
               Conread position:303-632
               
               
               Cow position:chr22:2623400-2623728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:219
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):11, 113

               
               
               Conread position:304-620
               
               
               Cow position:chr22:27047293-27047601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):17, 40

               
               
               Conread position:309-632
               
               
               Cow position:chr22:23403530-23403854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:226
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):71, 32

               
               
               Conread position:310-632
               
               
               Cow position:chr22:4645884-4645564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):10, 26

               
               
               Conread position:311-632
               
               
               Cow position:chr22:30049456-30049786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):91, 30

               
               
               Conread position:318-632
               
               
               Cow position:chr22:8481745-8481434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:208
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):90, 17

               
               
               Conread position:318-632
               
               
               Cow position:chr22:12946079-12946378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):180, 23

               
               
               Conread position:318-632
               
               
               Cow position:chr22:32651597-32651294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:220
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):56, 31

               
               
               Conread position:319-631
               
               
               Cow position:chr22:13861679-13861376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):76, 41

               
               
               Conread position:319-631
               
               
               Cow position:chr22:34616409-34616097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):15, 23

               
               
               Conread position:319-632
               
               
               Cow position:chr22:3317223-3316915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:209
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):89, 38

               
               
               Conread position:319-632
               
               
               Cow position:chr22:4017576-4017262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):179, 129

               
               
               Conread position:319-632
               
               
               Cow position:chr22:10315179-10314864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):116, 84

               
               
               Conread position:319-645
               
               
               Cow position:chr22:21295622-21295951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:224
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):83, 68

               
               
               Conread position:319-650
               
               
               Cow position:chr22:43119626-43119960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:221
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):95, 88

               
               
               Conread position:320-617
               
               
               Cow position:chr22:10421135-10420833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):30, 143

               
               
               Conread position:320-622
               
               
               Cow position:chr22:11458917-11458621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):220, 13

               
               
               Conread position:320-632
               
               
               Cow position:chr22:17294834-17295144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:208
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):94, 87

               
               
               Conread position:320-632
               
               
               Cow position:chr22:24175794-24176087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:208
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):14, 22

               
               
               Conread position:320-632
               
               
               Cow position:chr22:27328792-27329097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:217
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):47, 21

               
               
               Conread position:320-632
               
               
               Cow position:chr22:34750775-34750464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):17, 13

               
               
               Conread position:320-633
               
               
               Cow position:chr22:8115986-8116296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):12, 22

               
               
               Conread position:321-602
               
               
               Cow position:chr22:32895318-32895041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):13, 23

               
               
               Conread position:321-625
               
               
               Cow position:chr22:21502845-21502533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):87, 26

               
               
               Conread position:321-631
               
               
               Cow position:chr22:9521245-9520934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):57, 87

               
               
               Conread position:321-632
               
               
               Cow position:chr22:2502925-2502624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):82, 20

               
               
               Conread position:321-632
               
               
               Cow position:chr22:21355040-21355358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):83, 122

               
               
               Conread position:323-612
               
               
               Cow position:chr22:2627678-2627377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):76, 18

               
               
               Conread position:323-617
               
               
               Cow position:chr22:14924634-14924927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:202
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):80, 18

               
               
               Conread position:323-623
               
               
               Cow position:chr22:1279287-1279593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):82, 26

               
               
               Conread position:323-627
               
               
               Cow position:chr22:17125680-17125374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 18

               
               
               Conread position:323-630
               
               
               Cow position:chr22:24610996-24611287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):85, 26

               
               
               Conread position:323-631
               
               
               Cow position:chr22:3950350-3950029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):126, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr22:16044318-16044643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 26

               
               
               Conread position:323-632
               
               
               Cow position:chr22:17814330-17814015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:228
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):85, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr22:18126637-18126948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):81, 22

               
               
               Conread position:323-632
               
               
               Cow position:chr22:22223285-22222979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:215
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):85, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr22:23124067-23124394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):26, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr22:23857144-23856835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 26

               
               
               Conread position:323-632
               
               
               Cow position:chr22:26316554-26316260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):166, 16

               
               
               Conread position:323-632
               
               
               Cow position:chr22:26659140-26658842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):174, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr22:32188756-32189052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):85, 23

               
               
               Conread position:323-632
               
               
               Cow position:chr22:34712823-34712501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):83, 16

               
               
               Conread position:323-633
               
               
               Cow position:chr22:44180691-44180379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):85, 28

               
               
               Conread position:323-645
               
               
               Cow position:chr22:7852062-7851733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:236
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):85, 26

               
               
               Conread position:324-632
               
               
               Cow position:chr22:19775336-19775639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):90, 22

               
               
               Conread position:324-632
               
               
               Cow position:chr22:23855067-23854768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:217
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):84, 14

               
               
               Conread position:324-645
               
               
               Cow position:chr22:10919754-10920090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):84, 128

               
               
               Conread position:325-627
               
               
               Cow position:chr22:3909026-3908710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):83, 28

               
               
               Conread position:325-627
               
               
               Cow position:chr22:16327592-16327297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:208
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):72, 12

               
               
               Conread position:325-627
               
               
               Cow position:chr22:27480991-27480683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):96, 26

               
               
               Conread position:325-630
               
               
               Cow position:chr22:41245350-41245034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:220
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):82, 16

               
               
               Conread position:327-624
               
               
               Cow position:chr22:15338207-15337909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):81, 22

               
               
               Conread position:328-637
               
               
               Cow position:chr22:42945954-42946278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:332-645
               
               
               Cow position:chr22:43291813-43292127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):77, 9

               
               
               Conread position:334-632
               
               
               Cow position:chr22:1975696-1975399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):73, 7

               
               
               Conread position:335-632
               
               
               Cow position:chr22:22160813-22160507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):92, 133

               
               
               Conread position:338-624
               
               
               Cow position:chr22:11257664-11257941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):76, 30

               
               
               Conread position:344-626
               
               
               Cow position:chr22:6122829-6123103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:193
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):68, 35

               
               
               Conread position:346-632
               
               
               Cow position:chr22:13849377-13849663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:202
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):79, 51

               
               
               Conread position:349-632
               
               
               Cow position:chr22:845976-845689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):73, 118

               
               
               Conread position:351-632
               
               
               Cow position:chr22:16812093-16812376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):54, 109

               
               
               Conread position:352-618
               
               
               Cow position:chr22:16650129-16650402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):51, 127

               
               
               Conread position:352-646
               
               
               Cow position:chr22:34398386-34398685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):55, 110

               
               
               Conread position:356-629
               
               
               Cow position:chr22:39302934-39303216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):50, 12

               
               
               Conread position:356-632
               
               
               Cow position:chr22:7838656-7838392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):51, 38

               
               
               Conread position:359-632
               
               
               Cow position:chr22:15398514-15398791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):49, 74

               
               
               Conread position:361-622
               
               
               Cow position:chr22:34953876-34953602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):54, 46

               
               
               Conread position:361-631
               
               
               Cow position:chr22:17764440-17764165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):34, 44

               
               
               Conread position:361-645
               
               
               Cow position:chr22:3993671-3993384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):18, 83

               
               
               Conread position:362-629
               
               
               Cow position:chr22:17992970-17993240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):5, 91

               
               
               Conread position:362-632
               
               
               Cow position:chr22:14882055-14882323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):5, 31

               
               
               Conread position:362-632
               
               
               Cow position:chr22:31592795-31593074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:366-632
               
               
               Cow position:chr22:26097564-26097827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):17, 85

               
               
               Conread position:368-615
               
               
               Cow position:chr22:10677937-10678181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):35, 86

               
               
               Conread position:370-646
               
               
               Cow position:chr22:1640248-1640536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:194
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):29, 82

               
               
               Conread position:374-632
               
               
               Cow position:chr22:3252917-3253151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):40, 33

               
               
               Conread position:381-631
               
               
               Cow position:chr22:25629723-25629983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):26, 71

               
               
               Conread position:383-645
               
               
               Cow position:chr22:23865504-23865235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):130, 20

               
               
               Conread position:395-632
               
               
               Cow position:chr22:10585676-10585914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):19, 12

               
               
               Conread position:402-624
               
               
               Cow position:chr22:30710419-30710187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):55, 147

               
               
               Conread position:408-632
               
               
               Cow position:chr22:11500791-11500565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):14, 50

               
               
               Conread position:411-585
               
               
               Cow position:chr22:12599094-12598921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):89, 47

               
               
               Conread position:411-632
               
               
               Cow position:chr22:2702238-2702015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):90, 35

               
               
               Conread position:411-645
               
               
               Cow position:chr22:30712767-30712525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):87, 37

               
               
               Conread position:412-632
               
               
               Cow position:chr22:28731683-28731471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):86, 34

               
               
               Conread position:431-626
               
               
               Cow position:chr22:5042309-5042113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):22, 105

               
               
               Conread position:435-632
               
               
               Cow position:chr22:14602413-14602608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):58, 23

               
               
               Conread position:444-629
               
               
               Cow position:chr22:6360511-6360698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):12, 121

               
               
               Conread position:444-632
               
               
               Cow position:chr22:1821896-1822088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:458-639
               
               
               Cow position:chr22:3945139-3944954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:458-645
               
               
               Cow position:chr22:22146195-22146000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:459-632
               
               
               Cow position:chr22:25341982-25341807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):7, 22

               
               
               Conread position:463-627
               
               
               Cow position:chr22:1081461-1081295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):35, 15

               
               
               Conread position:463-628
               
               
               Cow position:chr22:26490419-26490252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):26, 135

               
               
               Conread position:470-630
               
               
               Cow position:chr22:4974473-4974631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):24, 121

               
               
               Conread position:470-632
               
               
               Cow position:chr22:4026557-4026394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):28, 86

               
               
               Conread position:470-632
               
               
               Cow position:chr22:12777638-12777796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:118
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):121, 31

               
               
               Conread position:470-633
               
               
               Cow position:chr22:6202867-6202699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:470-645
               
               
               Cow position:chr22:30472997-30472820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):30, 111

               
               
               Conread position:471-629
               
               
               Cow position:chr22:37817707-37817547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):23, 119

               
               
               Conread position:471-630
               
               
               Cow position:chr22:27512214-27512374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):27, 102

               
               
               Conread position:471-632
               
               
               Cow position:chr22:13242391-13242223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):25, 10

               
               
               Conread position:475-632
               
               
               Cow position:chr22:33094508-33094348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:115
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:475-645
               
               
               Cow position:chr22:27701161-27700987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:476-623
               
               
               Cow position:chr22:11200981-11200833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):20, 115

               
               
               Conread position:476-631
               
               
               Cow position:chr22:11987269-11987429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:476-632
               
               
               Cow position:chr22:36761573-36761417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):21, 89

               
               
               Conread position:477-645
               
               
               Cow position:chr22:16235705-16235877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:492-632
               
               
               Cow position:chr22:13187808-13187667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:495-627
               
               
               Cow position:chr22:6204370-6204502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):44, 74

               
               
               Conread position:495-628
               
               
               Cow position:chr22:21905417-21905285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:495-631
               
               
               Cow position:chr22:35533436-35533568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:105
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):50, 75

               
               
               Conread position:495-632
               
               
               Cow position:chr22:2141739-2141601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr22:2433965-2433826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:103
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr22:4043856-4043720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr22:9734778-9734642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr22:10683736-10683878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr22:12974465-12974606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:105
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr22:13951102-13950959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr22:14816501-14816638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr22:15292776-15292909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr22:19848471-19848609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):88, 69

               
               
               Conread position:495-632
               
               
               Cow position:chr22:30954960-30954826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):50, 46

               
               
               Conread position:495-632
               
               
               Cow position:chr22:31195001-31194860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):42, 52

               
               
               Conread position:495-632
               
               
               Cow position:chr22:33949075-33949215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):42, 50

               
               
               Conread position:495-632
               
               
               Cow position:chr22:35902776-35902908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:111
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr22:37554698-37554839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):19, 26

               
               
               Conread position:495-632
               
               
               Cow position:chr22:39494272-39494416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr22:45685101-45685246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:495-633
               
               
               Cow position:chr22:30689559-30689417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:495-645
               
               
               Cow position:chr22:21526668-21526818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:496-614
               
               
               Cow position:chr22:7252719-7252843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:496-632
               
               
               Cow position:chr22:8063401-8063539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:103
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:496-632
               
               
               Cow position:chr22:26106981-26106845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:496-632
               
               
               Cow position:chr22:39517106-39516970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):38, 100

               
               
               Conread position:498-632
               
               
               Cow position:chr22:19376629-19376497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):47, 103

               
               
               Conread position:499-628
               
               
               Cow position:chr22:5837150-5837023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:105
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):44, 22

               
               
               Conread position:499-632
               
               
               Cow position:chr22:8357534-8357401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:499-645
               
               
               Cow position:chr22:10609247-10609103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:501-632
               
               
               Cow position:chr22:17339846-17339976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):36, 70

               
               
               Conread position:501-632
               
               
               Cow position:chr22:34986188-34986315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:501-643
               
               
               Cow position:chr22:14006069-14005925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):31, 77

               
               
               Conread position:504-627
               
               
               Cow position:chr22:22013635-22013512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):39, 91

               
               
               Conread position:504-633
               
               
               Cow position:chr22:33985847-33985980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):34, 41

               
               
               Conread position:505-632
               
               
               Cow position:chr22:8877190-8877059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:100
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:505-632
               
               
               Cow position:chr22:47582823-47582693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):78, 100

               
               
               Conread position:506-632
               
               
               Cow position:chr22:13720610-13720738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:506-632
               
               
               Cow position:chr22:28289996-28289872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:506-632
               
               
               Cow position:chr22:41137228-41137102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:509-632
               
               
               Cow position:chr22:34618642-34618520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:97
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:509-632
               
               
               Cow position:chr22:45106004-45106131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:514-632
               
               
               Cow position:chr22:1857954-1857835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:97
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:522-632
               
               
               Cow position:chr22:26760066-26759956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:87
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:527-632
               
               
               Cow position:chr22:28120688-28120578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:94
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:173-392
               
               
               Cow position:chr23:2111043-2110818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):11, 23

               
               
               Conread position:201-631
               
               
               Cow position:chr23:29243166-29242739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 135

               
               
               Conread position:202-632
               
               
               Cow position:chr23:1536547-1536119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:299
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):113, 27

               
               
               Conread position:204-645
               
               
               Cow position:chr23:25864467-25864905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 24

               
               
               Conread position:206-567
               
               
               Cow position:chr23:12363390-12363761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):15, 244

               
               
               Conread position:206-632
               
               
               Cow position:chr23:3967326-3967758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:276
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):114, 37

               
               
               Conread position:206-632
               
               
               Cow position:chr23:11845496-11845080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:283
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):39, 74

               
               
               Conread position:207-632
               
               
               Cow position:chr23:4810962-4810542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:281
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):79, 24

               
               
               Conread position:207-632
               
               
               Cow position:chr23:10416200-10416631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:295
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):31, 93

               
               
               Conread position:209-623
               
               
               Cow position:chr23:11081482-11081057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:259
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):90, 21

               
               
               Conread position:209-632
               
               
               Cow position:chr23:29626651-29626206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:283
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):15, 24

               
               
               Conread position:210-632
               
               
               Cow position:chr23:40502288-40502721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:290
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):26, 17

               
               
               Conread position:211-320
               
               
               Cow position:chr23:6672405-6672514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:89
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:211-395
               
               
               Cow position:chr23:40965760-40965949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):104, 14

               
               
               Conread position:211-632
               
               
               Cow position:chr23:187404-186963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 148

               
               
               Conread position:212-619
               
               
               Cow position:chr23:8923821-8923408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:278
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):103, 142

               
               
               Conread position:212-632
               
               
               Cow position:chr23:22530216-22530626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:294
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):81, 20

               
               
               Conread position:213-404
               
               
               Cow position:chr23:10676078-10675875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):24, 140

               
               
               Conread position:213-425
               
               
               Cow position:chr23:23104272-23104483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):107, 14

               
               
               Conread position:213-433
               
               
               Cow position:chr23:11225075-11224848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):106, 131

               
               
               Conread position:214-403
               
               
               Cow position:chr23:17462812-17462614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):22, 14

               
               
               Conread position:214-423
               
               
               Cow position:chr23:4003866-4003650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):112, 14

               
               
               Conread position:214-602
               
               
               Cow position:chr23:40081719-40081349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:263
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):199, 92

               
               
               Conread position:214-623
               
               
               Cow position:chr23:4498910-4499335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:284
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):15, 147

               
               
               Conread position:214-632
               
               
               Cow position:chr23:19636065-19636472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:280
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):51, 13

               
               
               Conread position:214-632
               
               
               Cow position:chr23:33601314-33601732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:282
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):56, 18

               
               
               Conread position:215-388
               
               
               Cow position:chr23:19739343-19739526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):77, 136

               
               
               Conread position:215-404
               
               
               Cow position:chr23:4291577-4291379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):22, 145

               
               
               Conread position:215-405
               
               
               Cow position:chr23:36200618-36200427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):98, 125

               
               
               Conread position:215-621
               
               
               Cow position:chr23:13520658-13520256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:289
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):106, 12

               
               
               Conread position:215-629
               
               
               Cow position:chr23:37223872-37224271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:270
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):23, 78

               
               
               Conread position:215-632
               
               
               Cow position:chr23:534446-534021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 198

               
               
               Conread position:215-632
               
               
               Cow position:chr23:3247810-3247380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 136

               
               
               Conread position:215-632
               
               
               Cow position:chr23:41348407-41348857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:300
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):18, 130

               
               
               Conread position:216-396
               
               
               Cow position:chr23:30617255-30617447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):15, 137

               
               
               Conread position:216-403
               
               
               Cow position:chr23:9876783-9876974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):87, 15

               
               
               Conread position:216-405
               
               
               Cow position:chr23:11369437-11369251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):105, 16

               
               
               Conread position:216-410
               
               
               Cow position:chr23:25884184-25883984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):89, 143

               
               
               Conread position:216-411
               
               
               Cow position:chr23:33232482-33232684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):105, 133

               
               
               Conread position:216-416
               
               
               Cow position:chr23:27026874-27027080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):51, 127

               
               
               Conread position:216-438
               
               
               Cow position:chr23:16447474-16447701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):23, 128

               
               
               Conread position:216-544
               
               
               Cow position:chr23:5436419-5436760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:241
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):15, 138

               
               
               Conread position:216-594
               
               
               Cow position:chr23:39049223-39049595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:247
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):102, 20

               
               
               Conread position:216-602
               
               
               Cow position:chr23:22414089-22414491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:256
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):21, 95

               
               
               Conread position:216-614
               
               
               Cow position:chr23:34356858-34356443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:292
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):91, 16

               
               
               Conread position:216-618
               
               
               Cow position:chr23:25675478-25675887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:282
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):20, 49

               
               
               Conread position:216-621
               
               
               Cow position:chr23:38974053-38973649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 68

               
               
               Conread position:216-624
               
               
               Cow position:chr23:5190892-5191298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:273
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):192, 12

               
               
               Conread position:216-627
               
               
               Cow position:chr23:21788552-21788974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:296
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):112, 16

               
               
               Conread position:216-629
               
               
               Cow position:chr23:24929849-24930278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:286
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):15, 147

               
               
               Conread position:216-629
               
               
               Cow position:chr23:31601228-31601663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:288
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):15, 89

               
               
               Conread position:216-631
               
               
               Cow position:chr23:8006462-8006033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:282
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):15, 52

               
               
               Conread position:216-631
               
               
               Cow position:chr23:18802045-18802480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:292
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):15, 149

               
               
               Conread position:216-631
               
               
               Cow position:chr23:24704501-24704072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 48

               
               
               Conread position:216-632
               
               
               Cow position:chr23:1337092-1337513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 15

               
               
               Conread position:216-632
               
               
               Cow position:chr23:10084963-10085391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:283
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):15, 58

               
               
               Conread position:216-632
               
               
               Cow position:chr23:18322228-18322628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:297
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):21, 85

               
               
               Conread position:216-632
               
               
               Cow position:chr23:18901847-18902259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:277
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):17, 93

               
               
               Conread position:216-632
               
               
               Cow position:chr23:40778481-40778054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:297
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):112, 47

               
               
               Conread position:216-643
               
               
               Cow position:chr23:16246957-16246522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:297
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):31, 143

               
               
               Conread position:217-406
               
               
               Cow position:chr23:21483258-21483452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):20, 140

               
               
               Conread position:217-420
               
               
               Cow position:chr23:18739243-18739459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):19, 143

               
               
               Conread position:217-420
               
               
               Cow position:chr23:41107801-41108013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):16, 143

               
               
               Conread position:217-553
               
               
               Cow position:chr23:9226491-9226145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:239
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):96, 74

               
               
               Conread position:217-575
               
               
               Cow position:chr23:38245-37886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:253
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):110, 14

               
               
               Conread position:217-582
               
               
               Cow position:chr23:35239570-35239188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 51

               
               
               Conread position:217-621
               
               
               Cow position:chr23:1942949-1942524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:281
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):83, 15

               
               
               Conread position:217-628
               
               
               Cow position:chr23:35177517-35177113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:265
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):191, 14

               
               
               Conread position:218-405
               
               
               Cow position:chr23:1429615-1429803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):21, 103

               
               
               Conread position:218-413
               
               
               Cow position:chr23:40737801-40738003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):103, 13

               
               
               Conread position:218-420
               
               
               Cow position:chr23:30867085-30867293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):96, 11

               
               
               Conread position:218-424
               
               
               Cow position:chr23:1739671-1739467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):125, 13

               
               
               Conread position:218-438
               
               
               Cow position:chr23:9220618-9220401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):91, 14

               
               
               Conread position:218-452
               
               
               Cow position:chr23:24685455-24685216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):102, 14

               
               
               Conread position:218-473
               
               
               Cow position:chr23:2471223-2470949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):13, 143

               
               
               Conread position:218-538
               
               
               Cow position:chr23:40348432-40348755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):101, 11

               
               
               Conread position:218-557
               
               
               Cow position:chr23:5732753-5732417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):174, 45

               
               
               Conread position:218-629
               
               
               Cow position:chr23:4646723-4646308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:263
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):95, 224

               
               
               Conread position:218-632
               
               
               Cow position:chr23:2501641-2502057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 242

               
               
               Conread position:218-632
               
               
               Cow position:chr23:16689852-16690270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:293
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):107, 13

               
               
               Conread position:218-632
               
               
               Cow position:chr23:20557625-20558067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:302
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):13, 198

               
               
               Conread position:218-646
               
               
               Cow position:chr23:8293727-8293276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 152

               
               
               Conread position:219-326
               
               
               Cow position:chr23:12031622-12031517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:89
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:219-397
               
               
               Cow position:chr23:13410547-13410725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):107, 17

               
               
               Conread position:219-405
               
               
               Cow position:chr23:20539596-20539408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):10, 82

               
               
               Conread position:219-419
               
               
               Cow position:chr23:18823199-18822998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):88, 189

               
               
               Conread position:219-420
               
               
               Cow position:chr23:809722-809511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):94, 128

               
               
               Conread position:219-420
               
               
               Cow position:chr23:10888482-10888282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):195, 13

               
               
               Conread position:219-571
               
               
               Cow position:chr23:24983974-24984317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:246
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):10, 82

               
               
               Conread position:219-614
               
               
               Cow position:chr23:33570344-33569945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:279
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):94, 12

               
               
               Conread position:219-620
               
               
               Cow position:chr23:15286939-15287330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):168, 12

               
               
               Conread position:219-627
               
               
               Cow position:chr23:32106083-32105669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:274
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):189, 101

               
               
               Conread position:219-630
               
               
               Cow position:chr23:5617789-5617370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 9

               
               
               Conread position:219-632
               
               
               Cow position:chr23:11129452-11129026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 67

               
               
               Conread position:220-314
               
               
               Cow position:chr23:24479710-24479803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:95
               
               
               Alignm identity:80
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:220-386
               
               
               Cow position:chr23:5605479-5605300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:220-386
               
               
               Cow position:chr23:5612739-5612560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:220-404
               
               
               Cow position:chr23:18489869-18489680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):12, 127

               
               
               Conread position:220-575
               
               
               Cow position:chr23:799454-799818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:251
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):99, 11

               
               
               Conread position:220-588
               
               
               Cow position:chr23:12091145-12091523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:252
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):18, 40

               
               
               Conread position:220-612
               
               
               Cow position:chr23:39813718-39813321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:271
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):11, 140

               
               
               Conread position:220-643
               
               
               Cow position:chr23:33711977-33711546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 128

               
               
               Conread position:221-632
               
               
               Cow position:chr23:4578819-4579243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:277
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):16, 269

               
               
               Conread position:221-632
               
               
               Cow position:chr23:15872503-15872909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:273
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):162, 16

               
               
               Conread position:221-632
               
               
               Cow position:chr23:26794698-26795112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 115

               
               
               Conread position:221-633
               
               
               Cow position:chr23:19758424-19758832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:278
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):15, 45

               
               
               Conread position:222-614
               
               
               Cow position:chr23:34314740-34315155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:272
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):36, 246

               
               
               Conread position:222-635
               
               
               Cow position:chr23:2281977-2282388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:280
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):99, 10

               
               
               Conread position:224-436
               
               
               Cow position:chr23:39267996-39267772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):13, 135

               
               
               Conread position:225-539
               
               
               Cow position:chr23:39573057-39573371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):82, 11

               
               
               Conread position:226-629
               
               
               Cow position:chr23:26949399-26948985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:280
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):69, 95

               
               
               Conread position:226-637
               
               
               Cow position:chr23:37066064-37065625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 128

               
               
               Conread position:227-620
               
               
               Cow position:chr23:4726999-4726591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:281
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):88, 120

               
               
               Conread position:227-632
               
               
               Cow position:chr23:16582700-16583117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 132

               
               
               Conread position:228-420
               
               
               Cow position:chr23:5514719-5514532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):8, 73

               
               
               Conread position:228-420
               
               
               Cow position:chr23:39109142-39108938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):8, 132

               
               
               Conread position:228-539
               
               
               Cow position:chr23:1656101-1655780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):8, 62

               
               
               Conread position:228-624
               
               
               Cow position:chr23:20437357-20437763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:263
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):92, 153

               
               
               Conread position:228-632
               
               
               Cow position:chr23:7175824-7175412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:276
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):8, 131

               
               
               Conread position:228-632
               
               
               Cow position:chr23:10853253-10852844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 43

               
               
               Conread position:228-632
               
               
               Cow position:chr23:40781519-40781118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:275
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):186, 83

               
               
               Conread position:228-639
               
               
               Cow position:chr23:40790171-40789770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:275
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):96, 111

               
               
               Conread position:232-389
               
               
               Cow position:chr23:9726337-9726503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):89, 118

               
               
               Conread position:232-400
               
               
               Cow position:chr23:250028-250201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:232-420
               
               
               Cow position:chr23:13137737-13137930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):77, 121

               
               
               Conread position:232-425
               
               
               Cow position:chr23:17012540-17012737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):68, 112

               
               
               Conread position:232-438
               
               
               Cow position:chr23:17597624-17597412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):81, 31

               
               
               Conread position:232-537
               
               
               Cow position:chr23:22573704-22574029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):73, 165

               
               
               Conread position:232-624
               
               
               Cow position:chr23:40444058-40443665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:274
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):84, 121

               
               
               Conread position:232-626
               
               
               Cow position:chr23:29786141-29786555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:267
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):95, 127

               
               
               Conread position:232-628
               
               
               Cow position:chr23:1636470-1636078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:266
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):182, 84

               
               
               Conread position:232-629
               
               
               Cow position:chr23:4995894-4996294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:262
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):80, 189

               
               
               Conread position:232-629
               
               
               Cow position:chr23:24509886-24509496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:265
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):109, 67

               
               
               Conread position:232-631
               
               
               Cow position:chr23:28206801-28206404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:277
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):56, 39

               
               
               Conread position:232-631
               
               
               Cow position:chr23:29345575-29345967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:268
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):352, 89

               
               
               Conread position:232-631
               
               
               Cow position:chr23:38454961-38455392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:303
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):56, 132

               
               
               Conread position:232-632
               
               
               Cow position:chr23:1883595-1883185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 225

               
               
               Conread position:232-632
               
               
               Cow position:chr23:1884971-1885384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:284
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):70, 115

               
               
               Conread position:232-632
               
               
               Cow position:chr23:5869988-5870391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:274
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):93, 129

               
               
               Conread position:232-632
               
               
               Cow position:chr23:13555231-13555636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:280
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):36, 79

               
               
               Conread position:232-632
               
               
               Cow position:chr23:16880968-16881365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:259
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):172, 83

               
               
               Conread position:232-632
               
               
               Cow position:chr23:20744380-20744797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:289
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):86, 237

               
               
               Conread position:232-632
               
               
               Cow position:chr23:26986070-26986482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:280
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):78, 33

               
               
               Conread position:232-632
               
               
               Cow position:chr23:29801637-29801224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:261
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):88, 124

               
               
               Conread position:232-632
               
               
               Cow position:chr23:30585447-30585870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:283
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):89, 128

               
               
               Conread position:232-632
               
               
               Cow position:chr23:39753303-39752906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 15

               
               
               Conread position:232-632
               
               
               Cow position:chr23:39778599-39778205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:267
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):81, 29

               
               
               Conread position:232-643
               
               
               Cow position:chr23:40891546-40891139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:271
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):182, 59

               
               
               Conread position:232-645
               
               
               Cow position:chr23:15743293-15742878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:283
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):96, 57

               
               
               Conread position:233-632
               
               
               Cow position:chr23:5162643-5162224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:291
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):62, 128

               
               
               Conread position:234-550
               
               
               Cow position:chr23:5795676-5795352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):87, 213

               
               
               Conread position:234-629
               
               
               Cow position:chr23:3190927-3191329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:269
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):65, 17

               
               
               Conread position:235-476
               
               
               Cow position:chr23:1759446-1759197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:174
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):64, 113

               
               
               Conread position:235-560
               
               
               Cow position:chr23:5436801-5437134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:232
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):8, 125

               
               
               Conread position:236-410
               
               
               Cow position:chr23:10815759-10815938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):71, 46

               
               
               Conread position:236-539
               
               
               Cow position:chr23:283204-283502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):162, 28

               
               
               Conread position:236-624
               
               
               Cow position:chr23:26779476-26779860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:261
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):80, 122

               
               
               Conread position:236-626
               
               
               Cow position:chr23:20248496-20248902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:275
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):85, 68

               
               
               Conread position:236-632
               
               
               Cow position:chr23:5389878-5389494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:262
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):179, 61

               
               
               Conread position:236-632
               
               
               Cow position:chr23:7845486-7845081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:282
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):82, 27

               
               
               Conread position:236-632
               
               
               Cow position:chr23:14838563-14838944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:261
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):164, 28

               
               
               Conread position:236-632
               
               
               Cow position:chr23:20194732-20195126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:270
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):59, 48

               
               
               Conread position:236-632
               
               
               Cow position:chr23:22804920-22804515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 15

               
               
               Conread position:236-633
               
               
               Cow position:chr23:9734618-9734205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:292
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):62, 124

               
               
               Conread position:237-632
               
               
               Cow position:chr23:343981-344386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:285
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):58, 155

               
               
               Conread position:238-431
               
               
               Cow position:chr23:21423962-21423759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):82, 108

               
               
               Conread position:241-597
               
               
               Cow position:chr23:31970357-31970704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):172, 65

               
               
               Conread position:242-629
               
               
               Cow position:chr23:41472817-41472404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:279
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):68, 120

               
               
               Conread position:242-631
               
               
               Cow position:chr23:21660128-21659730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:264
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):93, 35

               
               
               Conread position:242-631
               
               
               Cow position:chr23:22396264-22396653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:266
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):165, 57

               
               
               Conread position:242-635
               
               
               Cow position:chr23:17484665-17485081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:277
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):198, 63

               
               
               Conread position:243-621
               
               
               Cow position:chr23:4968340-4968721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:264
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):84, 26

               
               
               Conread position:243-629
               
               
               Cow position:chr23:20388475-20388844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:267
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):164, 43

               
               
               Conread position:246-583
               
               
               Cow position:chr23:18415869-18416207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:249
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):73, 17

               
               
               Conread position:246-632
               
               
               Cow position:chr23:4972953-4972575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:279
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):75, 17

               
               
               Conread position:246-632
               
               
               Cow position:chr23:5603109-5603479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:260
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):160, 60

               
               
               Conread position:246-632
               
               
               Cow position:chr23:19001899-19002277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:263
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):22, 58

               
               
               Conread position:246-632
               
               
               Cow position:chr23:29470953-29471327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:265
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):78, 23

               
               
               Conread position:248-625
               
               
               Cow position:chr23:6244416-6244788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:251
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):64, 152

               
               
               Conread position:248-632
               
               
               Cow position:chr23:21452546-21452941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:254
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):25, 227

               
               
               Conread position:248-632
               
               
               Cow position:chr23:26632986-26632591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:274
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):67, 20

               
               
               Conread position:248-645
               
               
               Cow position:chr23:9599674-9599281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:275
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):25, 37

               
               
               Conread position:249-623
               
               
               Cow position:chr23:1188735-1189101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:259
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):94, 20

               
               
               Conread position:255-626
               
               
               Cow position:chr23:16631451-16631062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:258
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):71, 106

               
               
               Conread position:257-632
               
               
               Cow position:chr23:6768086-6767682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:260
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:261-621
               
               
               Cow position:chr23:21446286-21445920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:250
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):38, 63

               
               
               Conread position:266-632
               
               
               Cow position:chr23:20056714-20057075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:249
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):149, 67

               
               
               Conread position:271-631
               
               
               Cow position:chr23:5723700-5723336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:258
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):28, 71

               
               
               Conread position:271-631
               
               
               Cow position:chr23:22674271-22674646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:257
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):133, 28

               
               
               Conread position:271-631
               
               
               Cow position:chr23:23409885-23409539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:252
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):63, 43

               
               
               Conread position:271-632
               
               
               Cow position:chr23:39775888-39775522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:259
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):38, 77

               
               
               Conread position:284-666
               
               
               Cow position:chr23:21765066-21764675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:251
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):37, 78

               
               
               Conread position:294-633
               
               
               Cow position:chr23:29034447-29034104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:228
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):109, 26

               
               
               Conread position:299-629
               
               
               Cow position:chr23:33717411-33717749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):16, 72

               
               
               Conread position:299-632
               
               
               Cow position:chr23:1397911-1398246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):109, 42

               
               
               Conread position:299-632
               
               
               Cow position:chr23:30662510-30662836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):16, 43

               
               
               Conread position:300-629
               
               
               Cow position:chr23:15709945-15710283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:219
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):118, 41

               
               
               Conread position:300-632
               
               
               Cow position:chr23:13599465-13599133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:237
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):125, 27

               
               
               Conread position:300-632
               
               
               Cow position:chr23:20434937-20435259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):114, 41

               
               
               Conread position:304-632
               
               
               Cow position:chr23:14164272-14164608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:236
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):79, 16

               
               
               Conread position:304-632
               
               
               Cow position:chr23:22399528-22399193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:223
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):83, 31

               
               
               Conread position:308-632
               
               
               Cow position:chr23:6367729-6367397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):100, 45

               
               
               Conread position:314-632
               
               
               Cow position:chr23:1742466-1742149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:214
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):81, 27

               
               
               Conread position:314-645
               
               
               Cow position:chr23:14739561-14739227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):104, 27

               
               
               Conread position:315-630
               
               
               Cow position:chr23:33940045-33940361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):19, 27

               
               
               Conread position:317-593
               
               
               Cow position:chr23:1767938-1767661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):90, 24

               
               
               Conread position:317-618
               
               
               Cow position:chr23:19370965-19371265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:203
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):97, 24

               
               
               Conread position:318-617
               
               
               Cow position:chr23:10014636-10014342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:206
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):180, 17

               
               
               Conread position:319-632
               
               
               Cow position:chr23:3262390-3262707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:218
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):75, 22

               
               
               Conread position:319-632
               
               
               Cow position:chr23:9268688-9268381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):84, 77

               
               
               Conread position:319-632
               
               
               Cow position:chr23:29458990-29459297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):95, 88

               
               
               Conread position:320-631
               
               
               Cow position:chr23:1923729-1924043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:220
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):88, 115

               
               
               Conread position:321-624
               
               
               Cow position:chr23:11380145-11380458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:214
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):63, 32

               
               
               Conread position:323-588
               
               
               Cow position:chr23:7574521-7574796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):77, 28

               
               
               Conread position:323-589
               
               
               Cow position:chr23:33622046-33622317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):84, 26

               
               
               Conread position:323-611
               
               
               Cow position:chr23:4104499-4104219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):168, 18

               
               
               Conread position:323-627
               
               
               Cow position:chr23:7596250-7596535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):91, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr23:6994879-6995182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):83, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr23:13511829-13511525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:224
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):62, 12

               
               
               Conread position:323-632
               
               
               Cow position:chr23:16699938-16700247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:226
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):83, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr23:18697922-18698233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):85, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr23:27544931-27544624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:223
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):85, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr23:40648628-40648936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):82, 25

               
               
               Conread position:323-633
               
               
               Cow position:chr23:21336380-21336698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:224
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):81, 21

               
               
               Conread position:323-647
               
               
               Cow position:chr23:36309524-36309199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 25

               
               
               Conread position:324-632
               
               
               Cow position:chr23:1254790-1254469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):77, 17

               
               
               Conread position:324-632
               
               
               Cow position:chr23:10553906-10554220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:228
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):90, 19

               
               
               Conread position:324-632
               
               
               Cow position:chr23:24867413-24867094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):84, 120

               
               
               Conread position:325-632
               
               
               Cow position:chr23:12050458-12050157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):89, 16

               
               
               Conread position:329-645
               
               
               Cow position:chr23:28053369-28053056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:227
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):79, 21

               
               
               Conread position:333-632
               
               
               Cow position:chr23:18296900-18296599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:219
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):66, 8

               
               
               Conread position:335-632
               
               
               Cow position:chr23:8911555-8911270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):114, 87

               
               
               Conread position:336-632
               
               
               Cow position:chr23:4562977-4562675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):67, 121

               
               
               Conread position:336-632
               
               
               Cow position:chr23:39806961-39806664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):59, 210

               
               
               Conread position:340-629
               
               
               Cow position:chr23:40862433-40862134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):68, 24

               
               
               Conread position:341-632
               
               
               Cow position:chr23:25378733-25378447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):157, 54

               
               
               Conread position:350-645
               
               
               Cow position:chr23:27997206-27996912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):64, 57

               
               
               Conread position:351-631
               
               
               Cow position:chr23:1647693-1647421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):55, 13

               
               
               Conread position:352-632
               
               
               Cow position:chr23:27563625-27563917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:200
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):56, 181

               
               
               Conread position:352-632
               
               
               Cow position:chr23:36128838-36129110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:199
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):191, 28

               
               
               Conread position:352-645
               
               
               Cow position:chr23:1605304-1605002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):53, 127

               
               
               Conread position:357-624
               
               
               Cow position:chr23:36018221-36017942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):48, 145

               
               
               Conread position:359-632
               
               
               Cow position:chr23:11045554-11045276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):8, 83

               
               
               Conread position:361-582
               
               
               Cow position:chr23:4329608-4329839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:159
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):45, 105

               
               
               Conread position:361-618
               
               
               Cow position:chr23:25358790-25358545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):114, 36

               
               
               Conread position:361-629
               
               
               Cow position:chr23:11434193-11434461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):53, 48

               
               
               Conread position:361-630
               
               
               Cow position:chr23:417214-416954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):54, 46

               
               
               Conread position:369-632
               
               
               Cow position:chr23:7402760-7402498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):39, 85

               
               
               Conread position:375-553
               
               
               Cow position:chr23:9713371-9713187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):121, 81

               
               
               Conread position:379-632
               
               
               Cow position:chr23:4608332-4608590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):25, 82

               
               
               Conread position:382-632
               
               
               Cow position:chr23:2055747-2055494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):21, 67

               
               
               Conread position:388-630
               
               
               Cow position:chr23:1803826-1803584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):26, 19

               
               
               Conread position:394-632
               
               
               Cow position:chr23:15056609-15056850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):7, 75

               
               
               Conread position:401-632
               
               
               Cow position:chr23:3208594-3208827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):19, 47

               
               
               Conread position:411-630
               
               
               Cow position:chr23:18367713-18367489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):87, 37

               
               
               Conread position:411-632
               
               
               Cow position:chr23:3955431-3955213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):30, 53

               
               
               Conread position:411-633
               
               
               Cow position:chr23:27862340-27862122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):134, 9

               
               
               Conread position:412-629
               
               
               Cow position:chr23:38854723-38854940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):86, 39

               
               
               Conread position:425-632
               
               
               Cow position:chr23:6158221-6158422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):75, 27

               
               
               Conread position:432-631
               
               
               Cow position:chr23:35254245-35254445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):66, 26

               
               
               Conread position:432-632
               
               
               Cow position:chr23:11081069-11080873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):66, 35

               
               
               Conread position:443-632
               
               
               Cow position:chr23:25189327-25189133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):55, 15

               
               
               Conread position:449-632
               
               
               Cow position:chr23:36199267-36199085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):40, 27

               
               
               Conread position:455-632
               
               
               Cow position:chr23:1321234-1321402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:458-624
               
               
               Cow position:chr23:20259203-20259377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:458-624
               
               
               Cow position:chr23:20443323-20443498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:459-632
               
               
               Cow position:chr23:4421016-4421185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):13, 19

               
               
               Conread position:463-626
               
               
               Cow position:chr23:30656211-30656377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):34, 89

               
               
               Conread position:470-632
               
               
               Cow position:chr23:360959-361118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):30, 95

               
               
               Conread position:470-632
               
               
               Cow position:chr23:32961409-32961577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:470-637
               
               
               Cow position:chr23:21343294-21343462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):26, 61

               
               
               Conread position:478-645
               
               
               Cow position:chr23:37992936-37992768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):67, 15

               
               
               Conread position:481-618
               
               
               Cow position:chr23:3910057-3910195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):17, 107

               
               
               Conread position:490-632
               
               
               Cow position:chr23:8698382-8698235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:490-645
               
               
               Cow position:chr23:7485012-7484858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):51, 76

               
               
               Conread position:490-645
               
               
               Cow position:chr23:39309178-39309336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:492-632
               
               
               Cow position:chr23:29742319-29742177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):16, 48

               
               
               Conread position:492-639
               
               
               Cow position:chr23:1776697-1776846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:493-632
               
               
               Cow position:chr23:1068381-1068521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:493-632
               
               
               Cow position:chr23:29824131-29824274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:494-627
               
               
               Cow position:chr23:1428742-1428613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:494-632
               
               
               Cow position:chr23:4523045-4523187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:495-629
               
               
               Cow position:chr23:2371302-2371170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr23:221998-221862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:104
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):125, 59

               
               
               Conread position:495-632
               
               
               Cow position:chr23:1610784-1610644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):88, 135

               
               
               Conread position:495-632
               
               
               Cow position:chr23:2259666-2259808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):20, 55

               
               
               Conread position:495-632
               
               
               Cow position:chr23:11473579-11473715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):88, 24

               
               
               Conread position:495-632
               
               
               Cow position:chr23:31739788-31739650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:495-646
               
               
               Cow position:chr23:9594901-9595053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):18, 31

               
               
               Conread position:496-631
               
               
               Cow position:chr23:4980617-4980751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:496-632
               
               
               Cow position:chr23:10415099-10415234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:101
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:496-645
               
               
               Cow position:chr23:12896674-12896822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:111
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):34, 40

               
               
               Conread position:497-632
               
               
               Cow position:chr23:16563768-16563634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:499-621
               
               
               Cow position:chr23:39573366-39573489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:96
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:499-632
               
               
               Cow position:chr23:14895869-14896012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:111
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:503-630
               
               
               Cow position:chr23:4338682-4338813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:101
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:505-632
               
               
               Cow position:chr23:5706919-5706792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:103
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:506-632
               
               
               Cow position:chr23:1429876-1430002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:516-632
               
               
               Cow position:chr23:7937636-7937748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:518-632
               
               
               Cow position:chr23:1877965-1878079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:521-637
               
               
               Cow position:chr23:6172759-6172874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:91
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:523-632
               
               
               Cow position:chr23:10876329-10876221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:89
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:527-632
               
               
               Cow position:chr23:35366202-35366307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:89
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):54, 17

               
               
               Conread position:527-632
               
               
               Cow position:chr23:35369114-35369219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:89
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):54, 17

               
               
               Conread position:191-325
               
               
               Cow position:chr24:23637584-23637717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:104
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):31, 74

               
               
               Conread position:198-627
               
               
               Cow position:chr24:15693230-15692790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:294
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):118, 30

               
               
               Conread position:204-406
               
               
               Cow position:chr24:10289130-10289339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):22, 153

               
               
               Conread position:204-633
               
               
               Cow position:chr24:7917169-7917604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:308
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):7, 130

               
               
               Conread position:206-610
               
               
               Cow position:chr24:20801144-20801556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:286
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):113, 151

               
               
               Conread position:206-632
               
               
               Cow position:chr24:26928739-26929183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:303
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):14, 155

               
               
               Conread position:207-633
               
               
               Cow position:chr24:19465707-19466169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:316
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):17, 159

               
               
               Conread position:209-631
               
               
               Cow position:chr24:40592911-40592487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:294
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):100, 132

               
               
               Conread position:209-632
               
               
               Cow position:chr24:35985534-35985953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:284
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):10, 90

               
               
               Conread position:210-419
               
               
               Cow position:chr24:13586791-13587010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):21, 140

               
               
               Conread position:210-628
               
               
               Cow position:chr24:212167-211751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:275
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):193, 97

               
               
               Conread position:210-632
               
               
               Cow position:chr24:19535054-19535482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:296
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):26, 151

               
               
               Conread position:211-405
               
               
               Cow position:chr24:36554502-36554702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):20, 136

               
               
               Conread position:211-447
               
               
               Cow position:chr24:25970888-25971119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:211-631
               
               
               Cow position:chr24:30229665-30229235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 31

               
               
               Conread position:212-405
               
               
               Cow position:chr24:27940434-27940625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:212-632
               
               
               Cow position:chr24:5142133-5141706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:290
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):7, 21

               
               
               Conread position:213-575
               
               
               Cow position:chr24:12200212-12200590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:258
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):26, 56

               
               
               Conread position:213-632
               
               
               Cow position:chr24:17284789-17285232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:291
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):103, 148

               
               
               Conread position:214-327
               
               
               Cow position:chr24:35210251-35210138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:90
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:214-397
               
               
               Cow position:chr24:25947666-25947858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):105, 145

               
               
               Conread position:214-539
               
               
               Cow position:chr24:14550978-14550657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):103, 14

               
               
               Conread position:214-631
               
               
               Cow position:chr24:5651813-5652210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:281
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):99, 50

               
               
               Conread position:214-632
               
               
               Cow position:chr24:15057575-15057168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:277
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):136, 17

               
               
               Conread position:214-632
               
               
               Cow position:chr24:27040240-27039804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:303
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):113, 12

               
               
               Conread position:214-632
               
               
               Cow position:chr24:32054838-32054438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:294
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):22, 51

               
               
               Conread position:215-405
               
               
               Cow position:chr24:18811027-18810827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):32, 136

               
               
               Conread position:215-405
               
               
               Cow position:chr24:20017233-20017432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):113, 144

               
               
               Conread position:215-632
               
               
               Cow position:chr24:16995069-16994659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 17

               
               
               Conread position:215-632
               
               
               Cow position:chr24:18484799-18485234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 132

               
               
               Conread position:215-632
               
               
               Cow position:chr24:40301352-40300921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:279
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):92, 142

               
               
               Conread position:216-326
               
               
               Cow position:chr24:25142809-25142698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:89
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:216-404
               
               
               Cow position:chr24:18541267-18541453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):110, 12

               
               
               Conread position:216-406
               
               
               Cow position:chr24:11921717-11921916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):87, 144

               
               
               Conread position:216-419
               
               
               Cow position:chr24:17308948-17309155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):15, 130

               
               
               Conread position:216-423
               
               
               Cow position:chr24:34896509-34896723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):20, 132

               
               
               Conread position:216-434
               
               
               Cow position:chr24:36286761-36286535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):14, 132

               
               
               Conread position:216-524
               
               
               Cow position:chr24:39523259-39523573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):105, 130

               
               
               Conread position:216-531
               
               
               Cow position:chr24:2358992-2359309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):14, 139

               
               
               Conread position:216-541
               
               
               Cow position:chr24:390292-389958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:226
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):14, 138

               
               
               Conread position:216-554
               
               
               Cow position:chr24:11112390-11112744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):102, 130

               
               
               Conread position:216-582
               
               
               Cow position:chr24:19801031-19800662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:263
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):21, 138

               
               
               Conread position:216-585
               
               
               Cow position:chr24:27219900-27220278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:255
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):102, 15

               
               
               Conread position:216-590
               
               
               Cow position:chr24:21606483-21606853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:259
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):17, 147

               
               
               Conread position:216-620
               
               
               Cow position:chr24:6103018-6102600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:289
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):34, 27

               
               
               Conread position:216-631
               
               
               Cow position:chr24:18344262-18343815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:299
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):12, 150

               
               
               Conread position:216-631
               
               
               Cow position:chr24:19658723-19658315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:298
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):138, 12

               
               
               Conread position:216-632
               
               
               Cow position:chr24:27725817-27726238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:275
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):51, 231

               
               
               Conread position:216-632
               
               
               Cow position:chr24:28303172-28303583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:294
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):154, 16

               
               
               Conread position:216-632
               
               
               Cow position:chr24:28700232-28699823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:292
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):99, 15

               
               
               Conread position:216-632
               
               
               Cow position:chr24:42344804-42345243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:280
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):47, 15

               
               
               Conread position:216-635
               
               
               Cow position:chr24:30236063-30235632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:291
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):91, 199

               
               
               Conread position:217-326
               
               
               Cow position:chr24:38427922-38428029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:88
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:217-420
               
               
               Cow position:chr24:21524255-21524043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):103, 73

               
               
               Conread position:217-452
               
               
               Cow position:chr24:43219887-43220126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):20, 48

               
               
               Conread position:217-537
               
               
               Cow position:chr24:38478206-38478521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):47, 12

               
               
               Conread position:217-627
               
               
               Cow position:chr24:41001456-41001027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:283
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):101, 143

               
               
               Conread position:217-632
               
               
               Cow position:chr24:27267805-27267401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 64

               
               
               Conread position:217-645
               
               
               Cow position:chr24:30483753-30484191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 98

               
               
               Conread position:218-390
               
               
               Cow position:chr24:26808781-26808602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):19, 139

               
               
               Conread position:218-416
               
               
               Cow position:chr24:6007985-6008184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):101, 14

               
               
               Conread position:218-438
               
               
               Cow position:chr24:42688031-42687807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):17, 98

               
               
               Conread position:218-447
               
               
               Cow position:chr24:19187122-19186890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):19, 125

               
               
               Conread position:218-460
               
               
               Cow position:chr24:18137110-18137363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):19, 142

               
               
               Conread position:218-588
               
               
               Cow position:chr24:22647150-22647532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:263
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):39, 10

               
               
               Conread position:218-631
               
               
               Cow position:chr24:11887341-11886924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:275
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):91, 18

               
               
               Conread position:218-632
               
               
               Cow position:chr24:11840373-11839944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 53

               
               
               Conread position:218-632
               
               
               Cow position:chr24:36403966-36404382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:283
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):20, 77

               
               
               Conread position:218-645
               
               
               Cow position:chr24:27149573-27149150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 50

               
               
               Conread position:219-420
               
               
               Cow position:chr24:26001575-26001368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):105, 47

               
               
               Conread position:219-427
               
               
               Cow position:chr24:18696067-18695850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):80, 11

               
               
               Conread position:219-448
               
               
               Cow position:chr24:2992692-2992930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):85, 122

               
               
               Conread position:219-606
               
               
               Cow position:chr24:352415-352813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:277
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):17, 133

               
               
               Conread position:219-633
               
               
               Cow position:chr24:28722065-28721652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):195, 121

               
               
               Conread position:220-387
               
               
               Cow position:chr24:27412929-27413097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):85, 10

               
               
               Conread position:220-597
               
               
               Cow position:chr24:16089417-16089038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:261
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):18, 44

               
               
               Conread position:220-624
               
               
               Cow position:chr24:22689386-22689812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:277
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):96, 143

               
               
               Conread position:220-632
               
               
               Cow position:chr24:20225929-20225503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:285
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):82, 11

               
               
               Conread position:220-632
               
               
               Cow position:chr24:25194453-25194032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 129

               
               
               Conread position:220-632
               
               
               Cow position:chr24:27874758-27874370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:285
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):121, 10

               
               
               Conread position:220-632
               
               
               Cow position:chr24:27906626-27906200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 65

               
               
               Conread position:220-632
               
               
               Cow position:chr24:41980473-41980899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:290
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):78, 124

               
               
               Conread position:220-645
               
               
               Cow position:chr24:15508383-15508782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:284
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):269, 12

               
               
               Conread position:220-645
               
               
               Cow position:chr24:39483648-39483226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:281
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):178, 11

               
               
               Conread position:221-451
               
               
               Cow position:chr24:37974797-37975035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):48, 128

               
               
               Conread position:221-489
               
               
               Cow position:chr24:11028499-11028772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):10, 131

               
               
               Conread position:221-549
               
               
               Cow position:chr24:4725144-4724822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):193, 15

               
               
               Conread position:223-414
               
               
               Cow position:chr24:43832705-43832513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):94, 9

               
               
               Conread position:223-632
               
               
               Cow position:chr24:30313845-30314270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:276
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):90, 114

               
               
               Conread position:224-627
               
               
               Cow position:chr24:25321169-25320760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:280
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):12, 135

               
               
               Conread position:224-627
               
               
               Cow position:chr24:37298659-37299065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:266
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):83, 130

               
               
               Conread position:224-631
               
               
               Cow position:chr24:33372729-33372317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:280
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):83, 105

               
               
               Conread position:227-615
               
               
               Cow position:chr24:22079643-22079239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:284
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):92, 132

               
               
               Conread position:227-630
               
               
               Cow position:chr24:2402197-2402609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:280
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):99, 48

               
               
               Conread position:228-400
               
               
               Cow position:chr24:885266-885441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):89, 117

               
               
               Conread position:228-420
               
               
               Cow position:chr24:18750890-18750684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):8, 132

               
               
               Conread position:228-420
               
               
               Cow position:chr24:31383288-31383101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):8, 42

               
               
               Conread position:228-578
               
               
               Cow position:chr24:29587180-29586813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:248
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):8, 55

               
               
               Conread position:228-579
               
               
               Cow position:chr24:19000223-18999866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:252
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):9, 125

               
               
               Conread position:228-622
               
               
               Cow position:chr24:21519609-21519215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:271
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):92, 223

               
               
               Conread position:228-628
               
               
               Cow position:chr24:27607933-27608328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:266
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):86, 8

               
               
               Conread position:228-632
               
               
               Cow position:chr24:31812364-31811950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:265
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):70, 119

               
               
               Conread position:228-632
               
               
               Cow position:chr24:32158115-32158506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:254
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):209, 69

               
               
               Conread position:228-632
               
               
               Cow position:chr24:35332908-35332484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:273
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):8, 136

               
               
               Conread position:228-632
               
               
               Cow position:chr24:38815154-38814737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:280
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):8, 241

               
               
               Conread position:229-628
               
               
               Cow position:chr24:15246481-15246865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:271
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):184, 14

               
               
               Conread position:230-420
               
               
               Cow position:chr24:33238077-33238284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):89, 194

               
               
               Conread position:231-646
               
               
               Cow position:chr24:20588350-20587916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:284
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):25, 130

               
               
               Conread position:232-325
               
               
               Cow position:chr24:38693702-38693794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:94
               
               
               Alignm identity:80
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:232-403
               
               
               Cow position:chr24:37252332-37252155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):89, 115

               
               
               Conread position:232-419
               
               
               Cow position:chr24:18702575-18702380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):87, 126

               
               
               Conread position:232-456
               
               
               Cow position:chr24:6739999-6740225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):19, 112

               
               
               Conread position:232-496
               
               
               Cow position:chr24:10031749-10031491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):181, 54

               
               
               Conread position:232-585
               
               
               Cow position:chr24:41423770-41423422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):92, 11

               
               
               Conread position:232-601
               
               
               Cow position:chr24:6700180-6700572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:251
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):37, 128

               
               
               Conread position:232-619
               
               
               Cow position:chr24:16510146-16509751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:265
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):75, 23

               
               
               Conread position:232-624
               
               
               Cow position:chr24:7744896-7744508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:261
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):269, 74

               
               
               Conread position:232-627
               
               
               Cow position:chr24:34396015-34396402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:260
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):183, 37

               
               
               Conread position:232-631
               
               
               Cow position:chr24:10499393-10498977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:276
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):83, 158

               
               
               Conread position:232-631
               
               
               Cow position:chr24:18474554-18474981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:281
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):85, 413

               
               
               Conread position:232-632
               
               
               Cow position:chr24:3494056-3493658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 113

               
               
               Conread position:232-632
               
               
               Cow position:chr24:15861415-15861835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 120

               
               
               Conread position:232-632
               
               
               Cow position:chr24:17311054-17311443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:275
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):92, 33

               
               
               Conread position:232-632
               
               
               Cow position:chr24:27844358-27844754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:275
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):83, 90

               
               
               Conread position:232-632
               
               
               Cow position:chr24:28063125-28062711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:280
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):44, 130

               
               
               Conread position:232-632
               
               
               Cow position:chr24:34742924-34742515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:278
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):89, 27

               
               
               Conread position:232-632
               
               
               Cow position:chr24:42825340-42825732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:276
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):114, 45

               
               
               Conread position:232-633
               
               
               Cow position:chr24:29389392-29389011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:267
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):127, 70

               
               
               Conread position:232-635
               
               
               Cow position:chr24:7079939-7079549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:270
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):35, 56

               
               
               Conread position:232-645
               
               
               Cow position:chr24:7914184-7913751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:291
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):91, 129

               
               
               Conread position:232-645
               
               
               Cow position:chr24:33098297-33098735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:304
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):86, 117

               
               
               Conread position:233-326
               
               
               Cow position:chr24:22155504-22155411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:94
               
               
               Alignm identity:79
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:233-406
               
               
               Cow position:chr24:26569633-26569452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):83, 126

               
               
               Conread position:233-419
               
               
               Cow position:chr24:18874646-18874841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):95, 124

               
               
               Conread position:233-611
               
               
               Cow position:chr24:10126053-10125648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:282
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):88, 23

               
               
               Conread position:233-624
               
               
               Cow position:chr24:32609823-32609412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:277
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):65, 126

               
               
               Conread position:233-632
               
               
               Cow position:chr24:18734206-18734589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:277
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):182, 45

               
               
               Conread position:233-632
               
               
               Cow position:chr24:39849718-39850113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:254
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):82, 218

               
               
               Conread position:234-451
               
               
               Cow position:chr24:5360884-5360664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):89, 78

               
               
               Conread position:234-632
               
               
               Cow position:chr24:24755602-24755215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 30

               
               
               Conread position:236-412
               
               
               Cow position:chr24:5152697-5152513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):91, 115

               
               
               Conread position:236-501
               
               
               Cow position:chr24:23000172-22999912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):171, 50

               
               
               Conread position:236-632
               
               
               Cow position:chr24:3165990-3165587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:262
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):88, 20

               
               
               Conread position:236-632
               
               
               Cow position:chr24:17104401-17104800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:276
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):73, 27

               
               
               Conread position:236-632
               
               
               Cow position:chr24:28553401-28553779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:266
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):78, 27

               
               
               Conread position:236-632
               
               
               Cow position:chr24:37650846-37650436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:272
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):63, 178

               
               
               Conread position:237-632
               
               
               Cow position:chr24:17860092-17860485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:265
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):83, 220

               
               
               Conread position:240-420
               
               
               Cow position:chr24:32890881-32891063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):81, 15

               
               
               Conread position:241-632
               
               
               Cow position:chr24:40130302-40129888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:281
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):61, 23

               
               
               Conread position:242-632
               
               
               Cow position:chr24:28349729-28349351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:248
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):254, 42

               
               
               Conread position:242-632
               
               
               Cow position:chr24:29595635-29596050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 228

               
               
               Conread position:242-632
               
               
               Cow position:chr24:42103526-42103140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:266
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):78, 29

               
               
               Conread position:243-554
               
               
               Cow position:chr24:27630563-27630247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):60, 104

               
               
               Conread position:243-593
               
               
               Cow position:chr24:44987208-44987578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:258
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):84, 228

               
               
               Conread position:243-631
               
               
               Cow position:chr24:35074246-35073859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):255, 88

               
               
               Conread position:243-632
               
               
               Cow position:chr24:18374928-18374540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:266
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):43, 166

               
               
               Conread position:246-420
               
               
               Cow position:chr24:19637747-19637562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):75, 68

               
               
               Conread position:246-424
               
               
               Cow position:chr24:21102560-21102385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:246-621
               
               
               Cow position:chr24:36173618-36174006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:271
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):70, 114

               
               
               Conread position:246-623
               
               
               Cow position:chr24:31036499-31036132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:252
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):110, 9

               
               
               Conread position:246-632
               
               
               Cow position:chr24:32124494-32124876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:269
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):162, 23

               
               
               Conread position:246-645
               
               
               Cow position:chr24:18741404-18741818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:277
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):74, 109

               
               
               Conread position:246-645
               
               
               Cow position:chr24:31816736-31816338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:275
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):74, 20

               
               
               Conread position:247-632
               
               
               Cow position:chr24:23556177-23556565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:273
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):66, 106

               
               
               Conread position:247-632
               
               
               Cow position:chr24:41756010-41755628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:252
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):155, 53

               
               
               Conread position:248-567
               
               
               Cow position:chr24:35576377-35576704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):61, 20

               
               
               Conread position:248-623
               
               
               Cow position:chr24:22225350-22224952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:267
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):50, 32

               
               
               Conread position:248-631
               
               
               Cow position:chr24:28496423-28496822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:258
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):73, 166

               
               
               Conread position:248-632
               
               
               Cow position:chr24:20874839-20874442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:257
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):69, 124

               
               
               Conread position:248-632
               
               
               Cow position:chr24:44040852-44041243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 66

               
               
               Conread position:251-418
               
               
               Cow position:chr24:37119800-37119971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:252-632
               
               
               Cow position:chr24:20943315-20942935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:265
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):57, 95

               
               
               Conread position:252-632
               
               
               Cow position:chr24:34565272-34564892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:251
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):17, 12

               
               
               Conread position:252-645
               
               
               Cow position:chr24:17294040-17294434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:283
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):47, 99

               
               
               Conread position:258-605
               
               
               Cow position:chr24:28990711-28990358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:230
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):54, 90

               
               
               Conread position:259-613
               
               
               Cow position:chr24:16645170-16645537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:266
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):55, 91

               
               
               Conread position:260-632
               
               
               Cow position:chr24:29782311-29781927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:267
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):35, 91

               
               
               Conread position:270-621
               
               
               Cow position:chr24:31359455-31359099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):45, 80

               
               
               Conread position:271-589
               
               
               Cow position:chr24:17832684-17833004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:224
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):36, 77

               
               
               Conread position:271-631
               
               
               Cow position:chr24:2675451-2675096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:237
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):14, 183

               
               
               Conread position:271-633
               
               
               Cow position:chr24:29673646-29673284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:254
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):137, 24

               
               
               Conread position:279-632
               
               
               Cow position:chr24:5754956-5754607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):46, 13

               
               
               Conread position:285-632
               
               
               Cow position:chr24:33723730-33724085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):67, 56

               
               
               Conread position:295-645
               
               
               Cow position:chr24:814165-814512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:250
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):119, 25

               
               
               Conread position:297-632
               
               
               Cow position:chr24:33221842-33222174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):111, 17

               
               
               Conread position:298-613
               
               
               Cow position:chr24:15373505-15373194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:223
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):106, 12

               
               
               Conread position:298-632
               
               
               Cow position:chr24:31159723-31159395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:232
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):23, 49

               
               
               Conread position:299-627
               
               
               Cow position:chr24:28326979-28327312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):122, 162

               
               
               Conread position:299-643
               
               
               Cow position:chr24:40850254-40849913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:237
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):22, 44

               
               
               Conread position:299-645
               
               
               Cow position:chr24:14648258-14648582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:235
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):115, 42

               
               
               Conread position:301-632
               
               
               Cow position:chr24:23616795-23616460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:238
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):12, 27

               
               
               Conread position:301-632
               
               
               Cow position:chr24:24250821-24250498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):172, 19

               
               
               Conread position:303-632
               
               
               Cow position:chr24:201539-201869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):92, 186

               
               
               Conread position:309-632
               
               
               Cow position:chr24:29679222-29679545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):117, 32

               
               
               Conread position:311-631
               
               
               Cow position:chr24:27052408-27052728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:226
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):20, 69

               
               
               Conread position:314-593
               
               
               Cow position:chr24:18970422-18970700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):94, 27

               
               
               Conread position:318-632
               
               
               Cow position:chr24:3430816-3430501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):85, 124

               
               
               Conread position:318-632
               
               
               Cow position:chr24:8886993-8886682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):86, 136

               
               
               Conread position:319-632
               
               
               Cow position:chr24:11119359-11119048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):140, 88

               
               
               Conread position:319-632
               
               
               Cow position:chr24:29063577-29063880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:204
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):95, 65

               
               
               Conread position:320-582
               
               
               Cow position:chr24:32071042-32070782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):16, 12

               
               
               Conread position:320-616
               
               
               Cow position:chr24:33465541-33465819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):216, 21

               
               
               Conread position:320-631
               
               
               Cow position:chr24:31324365-31324047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:221
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):94, 31

               
               
               Conread position:320-632
               
               
               Cow position:chr24:27748721-27748415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):152, 87

               
               
               Conread position:321-631
               
               
               Cow position:chr24:43364438-43364130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:220
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):13, 21

               
               
               Conread position:322-632
               
               
               Cow position:chr24:43200196-43200508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):85, 19

               
               
               Conread position:323-580
               
               
               Cow position:chr24:16895359-16895618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):7, 21

               
               
               Conread position:323-632
               
               
               Cow position:chr24:2095805-2096123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):85, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr24:27290948-27290641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):84, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr24:29171038-29170731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):91, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr24:32369838-32370144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):94, 18

               
               
               Conread position:324-631
               
               
               Cow position:chr24:32204719-32205027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):75, 17

               
               
               Conread position:324-632
               
               
               Cow position:chr24:28690760-28690466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):90, 17

               
               
               Conread position:325-618
               
               
               Cow position:chr24:6140876-6141184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:205
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):84, 28

               
               
               Conread position:325-621
               
               
               Cow position:chr24:39159475-39159769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):83, 26

               
               
               Conread position:325-625
               
               
               Cow position:chr24:18975284-18974973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):105, 28

               
               
               Conread position:328-627
               
               
               Cow position:chr24:6507698-6507993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):128, 40

               
               
               Conread position:333-645
               
               
               Cow position:chr24:19769556-19769251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):75, 8

               
               
               Conread position:337-632
               
               
               Cow position:chr24:32822707-32823017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:207
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):69, 125

               
               
               Conread position:340-632
               
               
               Cow position:chr24:43432851-43432567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):67, 110

               
               
               Conread position:351-633
               
               
               Cow position:chr24:39440518-39440792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):63, 56

               
               
               Conread position:351-644
               
               
               Cow position:chr24:20249846-20250149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):56, 121

               
               
               Conread position:351-645
               
               
               Cow position:chr24:27096739-27096438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):54, 44

               
               
               Conread position:352-631
               
               
               Cow position:chr24:27340970-27341257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):28, 123

               
               
               Conread position:352-643
               
               
               Cow position:chr24:18771131-18771431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):51, 237

               
               
               Conread position:355-632
               
               
               Cow position:chr24:3152532-3152811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):53, 12

               
               
               Conread position:357-645
               
               
               Cow position:chr24:38347718-38347433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):141, 50

               
               
               Conread position:363-630
               
               
               Cow position:chr24:20024651-20024375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:198
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):51, 44

               
               
               Conread position:365-631
               
               
               Cow position:chr24:2970569-2970840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):44, 65

               
               
               Conread position:366-632
               
               
               Cow position:chr24:18331753-18331502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):48, 44

               
               
               Conread position:367-624
               
               
               Cow position:chr24:10012786-10012546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):47, 40

               
               
               Conread position:367-645
               
               
               Cow position:chr24:6487950-6487673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):66, 37

               
               
               Conread position:373-609
               
               
               Cow position:chr24:28253735-28253495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):34, 108

               
               
               Conread position:379-624
               
               
               Cow position:chr24:21918206-21918444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):35, 28

               
               
               Conread position:379-632
               
               
               Cow position:chr24:30178259-30178002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):86, 69

               
               
               Conread position:395-632
               
               
               Cow position:chr24:39218835-39219081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):8, 56

               
               
               Conread position:397-632
               
               
               Cow position:chr24:18390290-18390523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):25, 62

               
               
               Conread position:399-632
               
               
               Cow position:chr24:6160847-6161081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):61, 52

               
               
               Conread position:399-632
               
               
               Cow position:chr24:35794735-35794974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:402-629
               
               
               Cow position:chr24:34315351-34315126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:166
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):95, 49

               
               
               Conread position:402-629
               
               
               Cow position:chr24:42007737-42007514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):20, 53

               
               
               Conread position:411-632
               
               
               Cow position:chr24:15473344-15473121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):85, 35

               
               
               Conread position:411-632
               
               
               Cow position:chr24:16625500-16625735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):87, 47

               
               
               Conread position:411-632
               
               
               Cow position:chr24:27968070-27967846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):31, 56

               
               
               Conread position:440-633
               
               
               Cow position:chr24:18405361-18405543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):10, 19

               
               
               Conread position:446-632
               
               
               Cow position:chr24:27207240-27207429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:447-632
               
               
               Cow position:chr24:5152185-5151999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):96, 11

               
               
               Conread position:448-632
               
               
               Cow position:chr24:43635387-43635200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):135, 58

               
               
               Conread position:448-633
               
               
               Cow position:chr24:36486108-36486295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):54, 19

               
               
               Conread position:449-632
               
               
               Cow position:chr24:40184576-40184389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):45, 82

               
               
               Conread position:455-632
               
               
               Cow position:chr24:21264563-21264745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:456-632
               
               
               Cow position:chr24:36554891-36555064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):49, 85

               
               
               Conread position:459-632
               
               
               Cow position:chr24:27810129-27809948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:463-629
               
               
               Cow position:chr24:27719818-27719984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):30, 18

               
               
               Conread position:463-632
               
               
               Cow position:chr24:18324559-18324382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:470-629
               
               
               Cow position:chr24:21860293-21860452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):28, 96

               
               
               Conread position:470-631
               
               
               Cow position:chr24:20969869-20970025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):28, 95

               
               
               Conread position:470-632
               
               
               Cow position:chr24:591844-591676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:470-632
               
               
               Cow position:chr24:33238612-33238782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:470-632
               
               
               Cow position:chr24:37204948-37205113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:471-629
               
               
               Cow position:chr24:15919637-15919472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:471-631
               
               
               Cow position:chr24:27543547-27543709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:471-632
               
               
               Cow position:chr24:27941080-27941242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):27, 146

               
               
               Conread position:471-632
               
               
               Cow position:chr24:38375214-38375050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:471-632
               
               
               Cow position:chr24:39493224-39493063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):29, 105

               
               
               Conread position:476-631
               
               
               Cow position:chr24:18695544-18695388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):21, 91

               
               
               Conread position:476-633
               
               
               Cow position:chr24:30776741-30776903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):13, 102

               
               
               Conread position:477-632
               
               
               Cow position:chr24:37246288-37246452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:478-631
               
               
               Cow position:chr24:20862035-20862190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:114
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):9, 107

               
               
               Conread position:478-632
               
               
               Cow position:chr24:11007143-11006981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:481-632
               
               
               Cow position:chr24:25950746-25950901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):13, 37

               
               
               Conread position:493-632
               
               
               Cow position:chr24:40055816-40055956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):48, 72

               
               
               Conread position:495-629
               
               
               Cow position:chr24:25229154-25229289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:495-629
               
               
               Cow position:chr24:40091671-40091803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:103
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):14, 48

               
               
               Conread position:495-631
               
               
               Cow position:chr24:18732219-18732356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:105
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):9, 83

               
               
               Conread position:495-632
               
               
               Cow position:chr24:2730666-2730804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr24:6340919-6340783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):44, 99

               
               
               Conread position:495-632
               
               
               Cow position:chr24:11876788-11876649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr24:18025066-18025206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):91, 47

               
               
               Conread position:495-637
               
               
               Cow position:chr24:6149928-6149791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:495-663
               
               
               Cow position:chr24:14279797-14279623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:496-632
               
               
               Cow position:chr24:6957080-6956943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):65, 75

               
               
               Conread position:497-645
               
               
               Cow position:chr24:6900728-6900577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:503-632
               
               
               Cow position:chr24:39259060-39258930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:503-645
               
               
               Cow position:chr24:34533023-34532876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:505-632
               
               
               Cow position:chr24:22193624-22193491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:505-632
               
               
               Cow position:chr24:25424956-25424829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:100
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):35, 73

               
               
               Conread position:511-633
               
               
               Cow position:chr24:19804578-19804452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:102
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:515-630
               
               
               Cow position:chr24:15288743-15288625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:95
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):68, 14

               
               
               Conread position:515-634
               
               
               Cow position:chr24:6741962-6742085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:102
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:516-632
               
               
               Cow position:chr24:43832238-43832125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:93
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:135-630
               
               
               Cow position:chr25:12098130-12097632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:328
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):96, 26

               
               
               Conread position:198-662
               
               
               Cow position:chr25:27801511-27801043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:312
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):23, 204

               
               
               Conread position:201-604
               
               
               Cow position:chr25:17991369-17991768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:268
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):114, 30

               
               
               Conread position:205-590
               
               
               Cow position:chr25:4521619-4522003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):108, 25

               
               
               Conread position:207-393
               
               
               Cow position:chr25:9635539-9635360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:207-616
               
               
               Cow position:chr25:25861135-25861556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:282
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):18, 59

               
               
               Conread position:207-622
               
               
               Cow position:chr25:29826641-29826209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:290
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):109, 149

               
               
               Conread position:207-624
               
               
               Cow position:chr25:23053782-23053352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:296
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):96, 20

               
               
               Conread position:208-632
               
               
               Cow position:chr25:11585751-11585306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:306
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):29, 277

               
               
               Conread position:208-632
               
               
               Cow position:chr25:40956784-40957199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:279
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):30, 89

               
               
               Conread position:209-404
               
               
               Cow position:chr25:33100790-33100594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):100, 18

               
               
               Conread position:209-632
               
               
               Cow position:chr25:33663685-33664108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 128

               
               
               Conread position:210-420
               
               
               Cow position:chr25:9769637-9769417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):111, 27

               
               
               Conread position:210-622
               
               
               Cow position:chr25:17914999-17914578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:283
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):100, 17

               
               
               Conread position:211-404
               
               
               Cow position:chr25:32745552-32745357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):101, 21

               
               
               Conread position:211-439
               
               
               Cow position:chr25:5808161-5807931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):108, 16

               
               
               Conread position:211-451
               
               
               Cow position:chr25:6292784-6292543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):105, 17

               
               
               Conread position:211-632
               
               
               Cow position:chr25:35612086-35612509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:301
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):103, 17

               
               
               Conread position:213-420
               
               
               Cow position:chr25:31657062-31657274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:213-452
               
               
               Cow position:chr25:35109067-35109302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):191, 28

               
               
               Conread position:213-589
               
               
               Cow position:chr25:30462104-30462468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 50

               
               
               Conread position:214-496
               
               
               Cow position:chr25:35762803-35762516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):111, 202

               
               
               Conread position:214-534
               
               
               Cow position:chr25:30817112-30816772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):9, 141

               
               
               Conread position:215-512
               
               
               Cow position:chr25:17725251-17724966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:213
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):18, 106

               
               
               Conread position:215-632
               
               
               Cow position:chr25:20785371-20785796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:294
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):12, 51

               
               
               Conread position:216-394
               
               
               Cow position:chr25:3141717-3141532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):15, 42

               
               
               Conread position:216-405
               
               
               Cow position:chr25:22373273-22373472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):64, 133

               
               
               Conread position:216-408
               
               
               Cow position:chr25:28662321-28662125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):21, 91

               
               
               Conread position:216-421
               
               
               Cow position:chr25:18491251-18491038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):15, 131

               
               
               Conread position:216-428
               
               
               Cow position:chr25:10585113-10585324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):15, 52

               
               
               Conread position:216-579
               
               
               Cow position:chr25:7380623-7380999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):11, 52

               
               
               Conread position:216-586
               
               
               Cow position:chr25:26679440-26679062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:246
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):99, 243

               
               
               Conread position:216-613
               
               
               Cow position:chr25:14720942-14720559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:259
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):167, 12

               
               
               Conread position:216-626
               
               
               Cow position:chr25:22179121-22178715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:272
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):78, 13

               
               
               Conread position:217-389
               
               
               Cow position:chr25:21547365-21547191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):104, 11

               
               
               Conread position:217-405
               
               
               Cow position:chr25:33101400-33101587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):20, 31

               
               
               Conread position:217-449
               
               
               Cow position:chr25:18760498-18760738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):20, 90

               
               
               Conread position:217-541
               
               
               Cow position:chr25:17119956-17119624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:233
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):93, 148

               
               
               Conread position:217-562
               
               
               Cow position:chr25:22731039-22730691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:245
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):19, 128

               
               
               Conread position:217-622
               
               
               Cow position:chr25:7750659-7750248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:260
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):95, 48

               
               
               Conread position:217-632
               
               
               Cow position:chr25:6473862-6474311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:310
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):21, 152

               
               
               Conread position:217-632
               
               
               Cow position:chr25:15273875-15273477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:275
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):181, 15

               
               
               Conread position:217-632
               
               
               Cow position:chr25:41387301-41387729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:277
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):20, 105

               
               
               Conread position:218-449
               
               
               Cow position:chr25:20085789-20085549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):95, 140

               
               
               Conread position:218-624
               
               
               Cow position:chr25:17704945-17704545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:287
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):94, 14

               
               
               Conread position:218-627
               
               
               Cow position:chr25:40904618-40905036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:293
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):103, 14

               
               
               Conread position:218-632
               
               
               Cow position:chr25:10407200-10407630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:290
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):97, 143

               
               
               Conread position:218-632
               
               
               Cow position:chr25:20349088-20348646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:288
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):15, 203

               
               
               Conread position:219-397
               
               
               Cow position:chr25:12223774-12223597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:219-405
               
               
               Cow position:chr25:9023953-9023769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):88, 12

               
               
               Conread position:219-406
               
               
               Cow position:chr25:27916213-27916032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):19, 80

               
               
               Conread position:219-410
               
               
               Cow position:chr25:15447700-15447508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):88, 12

               
               
               Conread position:219-571
               
               
               Cow position:chr25:30619277-30618915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:249
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):48, 9

               
               
               Conread position:219-627
               
               
               Cow position:chr25:27869023-27868597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:277
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):22, 49

               
               
               Conread position:219-628
               
               
               Cow position:chr25:14833458-14833864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:276
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):93, 101

               
               
               Conread position:219-631
               
               
               Cow position:chr25:34768538-34768931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:287
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):188, 83

               
               
               Conread position:219-632
               
               
               Cow position:chr25:11436616-11437014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:280
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):203, 11

               
               
               Conread position:219-632
               
               
               Cow position:chr25:12778352-12778744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:276
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):182, 13

               
               
               Conread position:219-645
               
               
               Cow position:chr25:35348117-35347679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:298
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):15, 196

               
               
               Conread position:220-617
               
               
               Cow position:chr25:15409713-15410108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:270
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):119, 108

               
               
               Conread position:220-632
               
               
               Cow position:chr25:1763292-1762895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:287
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):93, 10

               
               
               Conread position:220-632
               
               
               Cow position:chr25:5846594-5847019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:295
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):17, 142

               
               
               Conread position:220-632
               
               
               Cow position:chr25:7641247-7641666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:271
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):93, 16

               
               
               Conread position:220-632
               
               
               Cow position:chr25:12293530-12293963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:288
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):16, 148

               
               
               Conread position:220-632
               
               
               Cow position:chr25:16921583-16922006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 133

               
               
               Conread position:220-632
               
               
               Cow position:chr25:18294103-18294525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:276
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):105, 31

               
               
               Conread position:220-637
               
               
               Cow position:chr25:26089618-26090032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):194, 43

               
               
               Conread position:220-643
               
               
               Cow position:chr25:21191686-21191261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:280
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):225, 65

               
               
               Conread position:222-326
               
               
               Cow position:chr25:33272844-33272741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:88
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:222-390
               
               
               Cow position:chr25:14210183-14210016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:222-438
               
               
               Cow position:chr25:14225574-14225343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:162
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):97, 140

               
               
               Conread position:222-632
               
               
               Cow position:chr25:12899973-12899543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:279
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):99, 262

               
               
               Conread position:223-420
               
               
               Cow position:chr25:13542777-13542985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):15, 21

               
               
               Conread position:224-632
               
               
               Cow position:chr25:14791957-14791540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 7

               
               
               Conread position:225-589
               
               
               Cow position:chr25:21893537-21893168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:253
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):80, 7

               
               
               Conread position:225-632
               
               
               Cow position:chr25:30319244-30319661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 178

               
               
               Conread position:226-402
               
               
               Cow position:chr25:15553102-15552931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:126
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:226-632
               
               
               Cow position:chr25:7217020-7216616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):188, 94

               
               
               Conread position:227-632
               
               
               Cow position:chr25:23324171-23324576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:263
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):107, 184

               
               
               Conread position:228-402
               
               
               Cow position:chr25:24863070-24862895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):11, 113

               
               
               Conread position:228-548
               
               
               Cow position:chr25:18201727-18202054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:240
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):8, 36

               
               
               Conread position:228-625
               
               
               Cow position:chr25:8157314-8157715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:276
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):113, 25

               
               
               Conread position:228-632
               
               
               Cow position:chr25:1838445-1838027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 122

               
               
               Conread position:228-632
               
               
               Cow position:chr25:6463826-6464241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:286
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):8, 134

               
               
               Conread position:228-632
               
               
               Cow position:chr25:21289551-21289128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:288
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):8, 135

               
               
               Conread position:228-632
               
               
               Cow position:chr25:21951324-21950914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:275
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):41, 10

               
               
               Conread position:228-632
               
               
               Cow position:chr25:22296812-22297229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:267
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):75, 194

               
               
               Conread position:228-632
               
               
               Cow position:chr25:26087721-26087303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 88

               
               
               Conread position:229-632
               
               
               Cow position:chr25:37594585-37594202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:266
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):178, 73

               
               
               Conread position:230-632
               
               
               Cow position:chr25:13380399-13380828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:289
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):98, 137

               
               
               Conread position:231-450
               
               
               Cow position:chr25:11780462-11780247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):181, 68

               
               
               Conread position:232-405
               
               
               Cow position:chr25:11957001-11956822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):89, 115

               
               
               Conread position:232-420
               
               
               Cow position:chr25:28945213-28945023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):81, 34

               
               
               Conread position:232-428
               
               
               Cow position:chr25:2362022-2361828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):158, 74

               
               
               Conread position:232-436
               
               
               Cow position:chr25:23519840-23520045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):67, 34

               
               
               Conread position:232-532
               
               
               Cow position:chr25:1823894-1824207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):77, 122

               
               
               Conread position:232-555
               
               
               Cow position:chr25:22756808-22756474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):84, 11

               
               
               Conread position:232-582
               
               
               Cow position:chr25:9002866-9002513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:239
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):65, 53

               
               
               Conread position:232-584
               
               
               Cow position:chr25:41150767-41151124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:243
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):67, 144

               
               
               Conread position:232-612
               
               
               Cow position:chr25:26134243-26133846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:267
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):94, 128

               
               
               Conread position:232-621
               
               
               Cow position:chr25:26136623-26137020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:272
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):84, 128

               
               
               Conread position:232-624
               
               
               Cow position:chr25:13295060-13294702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:273
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):313, 34

               
               
               Conread position:232-626
               
               
               Cow position:chr25:13272766-13272363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:276
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):83, 218

               
               
               Conread position:232-632
               
               
               Cow position:chr25:7306487-7306086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:273
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):91, 187

               
               
               Conread position:232-632
               
               
               Cow position:chr25:8120978-8120564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:260
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):69, 271

               
               
               Conread position:232-632
               
               
               Cow position:chr25:10643119-10643522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:273
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):158, 112

               
               
               Conread position:232-632
               
               
               Cow position:chr25:17975202-17975579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:270
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):207, 82

               
               
               Conread position:232-632
               
               
               Cow position:chr25:18720930-18721317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:256
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):190, 87

               
               
               Conread position:232-632
               
               
               Cow position:chr25:19130051-19129641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 120

               
               
               Conread position:232-632
               
               
               Cow position:chr25:19679549-19679130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:275
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:232-632
               
               
               Cow position:chr25:21192744-21193156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:274
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):124, 75

               
               
               Conread position:232-632
               
               
               Cow position:chr25:24136267-24136648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:254
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):216, 29

               
               
               Conread position:232-632
               
               
               Cow position:chr25:24405555-24405948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:274
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):176, 49

               
               
               Conread position:232-632
               
               
               Cow position:chr25:24573255-24572862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:268
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):90, 32

               
               
               Conread position:232-632
               
               
               Cow position:chr25:24669255-24669643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:273
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):81, 104

               
               
               Conread position:232-632
               
               
               Cow position:chr25:26224839-26225252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:283
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):169, 118

               
               
               Conread position:232-632
               
               
               Cow position:chr25:26701217-26700826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:271
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):79, 89

               
               
               Conread position:232-632
               
               
               Cow position:chr25:33550709-33550293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:280
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):6, 111

               
               
               Conread position:232-632
               
               
               Cow position:chr25:38135950-38135536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:272
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):84, 365

               
               
               Conread position:232-659
               
               
               Cow position:chr25:26655089-26654667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):186, 61

               
               
               Conread position:232-664
               
               
               Cow position:chr25:12755294-12755735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 84

               
               
               Conread position:233-632
               
               
               Cow position:chr25:20069909-20069508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:267
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):121, 107

               
               
               Conread position:233-632
               
               
               Cow position:chr25:21245397-21245819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:292
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):34, 239

               
               
               Conread position:234-585
               
               
               Cow position:chr25:24651262-24651617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:237
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):145, 61

               
               
               Conread position:234-622
               
               
               Cow position:chr25:8576869-8576491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:264
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):188, 63

               
               
               Conread position:234-632
               
               
               Cow position:chr25:16318955-16319344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:259
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):180, 51

               
               
               Conread position:234-645
               
               
               Cow position:chr25:17658807-17658389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 123

               
               
               Conread position:236-390
               
               
               Cow position:chr25:10303720-10303567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):71, 86

               
               
               Conread position:236-407
               
               
               Cow position:chr25:11760267-11760438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):158, 65

               
               
               Conread position:236-456
               
               
               Cow position:chr25:8345808-8346038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:160
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):68, 124

               
               
               Conread position:236-609
               
               
               Cow position:chr25:11316095-11315722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:254
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):78, 112

               
               
               Conread position:236-631
               
               
               Cow position:chr25:14513299-14512904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 73

               
               
               Conread position:236-631
               
               
               Cow position:chr25:20076672-20076286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:264
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):172, 63

               
               
               Conread position:236-632
               
               
               Cow position:chr25:9269533-9269159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:266
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):84, 108

               
               
               Conread position:236-645
               
               
               Cow position:chr25:36082061-36081648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 68

               
               
               Conread position:237-404
               
               
               Cow position:chr25:36156003-36155837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:241-420
               
               
               Cow position:chr25:36873149-36873330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):82, 168

               
               
               Conread position:242-632
               
               
               Cow position:chr25:10504148-10504547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:272
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):67, 53

               
               
               Conread position:242-632
               
               
               Cow position:chr25:20008321-20007935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:277
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):67, 106

               
               
               Conread position:243-419
               
               
               Cow position:chr25:18646766-18646589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):64, 108

               
               
               Conread position:243-554
               
               
               Cow position:chr25:36835246-36835558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):72, 114

               
               
               Conread position:243-617
               
               
               Cow position:chr25:22242135-22241794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:251
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):293, 50

               
               
               Conread position:246-420
               
               
               Cow position:chr25:6259067-6258884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):69, 100

               
               
               Conread position:246-535
               
               
               Cow position:chr25:25716828-25716537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):68, 100

               
               
               Conread position:246-539
               
               
               Cow position:chr25:19363877-19364180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):74, 217

               
               
               Conread position:246-592
               
               
               Cow position:chr25:13443224-13443581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:243
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):57, 200

               
               
               Conread position:246-596
               
               
               Cow position:chr25:23244821-23245185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):74, 163

               
               
               Conread position:246-632
               
               
               Cow position:chr25:20023211-20023605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:258
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):164, 43

               
               
               Conread position:246-645
               
               
               Cow position:chr25:36535235-36535660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:292
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):81, 23

               
               
               Conread position:247-622
               
               
               Cow position:chr25:11661648-11662022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:251
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):89, 16

               
               
               Conread position:248-629
               
               
               Cow position:chr25:23828949-23829327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:251
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):67, 239

               
               
               Conread position:248-632
               
               
               Cow position:chr25:2624975-2624592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:260
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):73, 90

               
               
               Conread position:249-632
               
               
               Cow position:chr25:16867425-16867017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:276
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):54, 309

               
               
               Conread position:250-612
               
               
               Cow position:chr25:17342640-17342257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:255
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):77, 111

               
               
               Conread position:250-632
               
               
               Cow position:chr25:40321117-40321505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:260
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):61, 17

               
               
               Conread position:250-633
               
               
               Cow position:chr25:17566770-17566374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:270
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):74, 32

               
               
               Conread position:252-624
               
               
               Cow position:chr25:6978160-6977774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:253
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):67, 110

               
               
               Conread position:254-632
               
               
               Cow position:chr25:22203522-22203902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:262
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):97, 63

               
               
               Conread position:255-631
               
               
               Cow position:chr25:18075840-18075457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:257
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):73, 103

               
               
               Conread position:259-645
               
               
               Cow position:chr25:788427-788044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:260
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):40, 87

               
               
               Conread position:261-631
               
               
               Cow position:chr25:41132198-41132566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):64, 90

               
               
               Conread position:261-632
               
               
               Cow position:chr25:16065050-16064684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 16

               
               
               Conread position:271-631
               
               
               Cow position:chr25:12840572-12840929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:241
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):64, 17

               
               
               Conread position:276-631
               
               
               Cow position:chr25:18988533-18988165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:263
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):17, 69

               
               
               Conread position:293-609
               
               
               Cow position:chr25:18906016-18905692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:231
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):19, 50

               
               
               Conread position:308-568
               
               
               Cow position:chr25:6688059-6687802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:314-632
               
               
               Cow position:chr25:10217941-10218263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):91, 35

               
               
               Conread position:317-577
               
               
               Cow position:chr25:5474125-5474383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):97, 32

               
               
               Conread position:317-605
               
               
               Cow position:chr25:18894623-18894908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):121, 71

               
               
               Conread position:317-645
               
               
               Cow position:chr25:13569073-13569392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:228
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):109, 10

               
               
               Conread position:318-645
               
               
               Cow position:chr25:36036674-36037005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 89

               
               
               Conread position:319-629
               
               
               Cow position:chr25:6682958-6683270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:196
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):89, 152

               
               
               Conread position:319-631
               
               
               Cow position:chr25:36762209-36761895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:220
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):91, 140

               
               
               Conread position:319-632
               
               
               Cow position:chr25:22531385-22531075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):97, 136

               
               
               Conread position:319-632
               
               
               Cow position:chr25:30279104-30279419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:204
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):79, 152

               
               
               Conread position:319-645
               
               
               Cow position:chr25:25051273-25051609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):14, 136

               
               
               Conread position:320-574
               
               
               Cow position:chr25:8961873-8961620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):102, 168

               
               
               Conread position:320-631
               
               
               Cow position:chr25:7581324-7581639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):14, 22

               
               
               Conread position:320-631
               
               
               Cow position:chr25:23917944-23917629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):178, 92

               
               
               Conread position:323-624
               
               
               Cow position:chr25:20133215-20133520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):91, 18

               
               
               Conread position:323-629
               
               
               Cow position:chr25:28187846-28188158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:224
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):91, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr25:14196960-14196644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:223
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):83, 20

               
               
               Conread position:323-632
               
               
               Cow position:chr25:18564585-18564283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):86, 26

               
               
               Conread position:323-632
               
               
               Cow position:chr25:21894786-21895098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:224
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):85, 18

               
               
               Conread position:324-626
               
               
               Cow position:chr25:36017632-36017334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):7, 26

               
               
               Conread position:325-622
               
               
               Cow position:chr25:3145940-3145638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):83, 20

               
               
               Conread position:325-624
               
               
               Cow position:chr25:22369482-22369189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):83, 28

               
               
               Conread position:325-624
               
               
               Cow position:chr25:27821508-27821207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):105, 18

               
               
               Conread position:325-631
               
               
               Cow position:chr25:61747-61446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):89, 16

               
               
               Conread position:328-626
               
               
               Cow position:chr25:16714175-16714480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):20, 13

               
               
               Conread position:335-632
               
               
               Cow position:chr25:15377414-15377121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):70, 52

               
               
               Conread position:337-594
               
               
               Cow position:chr25:15440691-15440954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):129, 69

               
               
               Conread position:340-645
               
               
               Cow position:chr25:12817448-12817147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):5, 10

               
               
               Conread position:346-632
               
               
               Cow position:chr25:33256430-33256156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):61, 98

               
               
               Conread position:355-632
               
               
               Cow position:chr25:20019935-20020199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):188, 84

               
               
               Conread position:355-632
               
               
               Cow position:chr25:38425429-38425153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:197
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):59, 54

               
               
               Conread position:361-632
               
               
               Cow position:chr25:25753934-25754209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):53, 46

               
               
               Conread position:362-631
               
               
               Cow position:chr25:33691619-33691342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):46, 37

               
               
               Conread position:373-631
               
               
               Cow position:chr25:9754046-9754295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:173
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):170, 34

               
               
               Conread position:374-613
               
               
               Cow position:chr25:13672444-13672195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):33, 88

               
               
               Conread position:374-632
               
               
               Cow position:chr25:11666697-11666444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:175
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):40, 33

               
               
               Conread position:375-630
               
               
               Cow position:chr25:9956990-9957242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):33, 75

               
               
               Conread position:388-636
               
               
               Cow position:chr25:11131615-11131365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):49, 90

               
               
               Conread position:389-632
               
               
               Cow position:chr25:35333192-35332953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:175
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):18, 62

               
               
               Conread position:393-628
               
               
               Cow position:chr25:26269911-26270142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):75, 61

               
               
               Conread position:394-631
               
               
               Cow position:chr25:6891506-6891730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):132, 13

               
               
               Conread position:394-643
               
               
               Cow position:chr25:448318-448571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):100, 16

               
               
               Conread position:402-632
               
               
               Cow position:chr25:25827488-25827250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:159
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):98, 44

               
               
               Conread position:406-632
               
               
               Cow position:chr25:12204491-12204258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):20, 167

               
               
               Conread position:411-629
               
               
               Cow position:chr25:35625176-35625385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:411-632
               
               
               Cow position:chr25:5515022-5514794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):46, 57

               
               
               Conread position:411-637
               
               
               Cow position:chr25:12824009-12824230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):87, 37

               
               
               Conread position:414-632
               
               
               Cow position:chr25:10138099-10137886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):57, 39

               
               
               Conread position:424-632
               
               
               Cow position:chr25:15319915-15319708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):65, 45

               
               
               Conread position:432-631
               
               
               Cow position:chr25:15694969-15694773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:444-632
               
               
               Cow position:chr25:24452199-24452382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):99, 41

               
               
               Conread position:448-650
               
               
               Cow position:chr25:16001550-16001750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):50, 118

               
               
               Conread position:458-631
               
               
               Cow position:chr25:1735352-1735527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):40, 17

               
               
               Conread position:458-632
               
               
               Cow position:chr25:9961206-9961390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:458-632
               
               
               Cow position:chr25:10365788-10365964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:459-632
               
               
               Cow position:chr25:7329510-7329332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:459-634
               
               
               Cow position:chr25:14224839-14225010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):7, 113

               
               
               Conread position:463-613
               
               
               Cow position:chr25:3983001-3982851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):92, 107

               
               
               Conread position:463-632
               
               
               Cow position:chr25:26112227-26112062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):33, 104

               
               
               Conread position:463-632
               
               
               Cow position:chr25:36026968-36026795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:468-632
               
               
               Cow position:chr25:24008221-24008389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):26, 8

               
               
               Conread position:470-613
               
               
               Cow position:chr25:35110173-35110323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:476-632
               
               
               Cow position:chr25:10746844-10746688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):31, 47

               
               
               Conread position:478-632
               
               
               Cow position:chr25:12239203-12239360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:481-632
               
               
               Cow position:chr25:19576503-19576651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:112
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):17, 39

               
               
               Conread position:481-632
               
               
               Cow position:chr25:20060085-20060244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:482-632
               
               
               Cow position:chr25:18448778-18448625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):102, 60

               
               
               Conread position:485-623
               
               
               Cow position:chr25:21266947-21266807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:485-631
               
               
               Cow position:chr25:20461064-20460912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:493-631
               
               
               Cow position:chr25:32191598-32191458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:493-632
               
               
               Cow position:chr25:2111004-2110871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:493-632
               
               
               Cow position:chr25:35340258-35340120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):33, 48

               
               
               Conread position:493-645
               
               
               Cow position:chr25:21209017-21209173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:495-631
               
               
               Cow position:chr25:17712462-17712323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):48, 81

               
               
               Conread position:495-632
               
               
               Cow position:chr25:6256011-6256150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):48, 123

               
               
               Conread position:495-632
               
               
               Cow position:chr25:7801064-7800924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:106
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):91, 20

               
               
               Conread position:495-632
               
               
               Cow position:chr25:8347434-8347297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):41, 73

               
               
               Conread position:495-632
               
               
               Cow position:chr25:24167976-24168115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr25:26238796-26238659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:110
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr25:36033363-36033224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):95, 68

               
               
               Conread position:495-637
               
               
               Cow position:chr25:9396376-9396234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:118
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):48, 23

               
               
               Conread position:498-632
               
               
               Cow position:chr25:34169876-34169742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:499-632
               
               
               Cow position:chr25:433152-433292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):42, 76

               
               
               Conread position:501-629
               
               
               Cow position:chr25:16389371-16389501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:505-632
               
               
               Cow position:chr25:18934957-18935086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:507-632
               
               
               Cow position:chr25:9842917-9842789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):78, 116

               
               
               Conread position:514-632
               
               
               Cow position:chr25:14266597-14266716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:100
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:514-643
               
               
               Cow position:chr25:19478597-19478465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):72, 15

               
               
               Conread position:520-629
               
               
               Cow position:chr25:10330499-10330611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:94
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):66, 10

               
               
               Conread position:190-419
               
               
               Cow position:chr26:28446824-28446604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):213, 34

               
               
               Conread position:199-632
               
               
               Cow position:chr26:34314929-34314483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:304
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):32, 66

               
               
               Conread position:201-645
               
               
               Cow position:chr26:9492166-9491722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 199

               
               
               Conread position:202-562
               
               
               Cow position:chr26:34026784-34027163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:256
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):27, 152

               
               
               Conread position:207-405
               
               
               Cow position:chr26:8811714-8811509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):112, 25

               
               
               Conread position:210-445
               
               
               Cow position:chr26:13974907-13975147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):82, 21

               
               
               Conread position:211-420
               
               
               Cow position:chr26:34114502-34114284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):8, 148

               
               
               Conread position:211-631
               
               
               Cow position:chr26:8811371-8810940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 152

               
               
               Conread position:212-618
               
               
               Cow position:chr26:13978894-13979311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:275
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):25, 87

               
               
               Conread position:212-632
               
               
               Cow position:chr26:3071742-3072156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:291
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):25, 143

               
               
               Conread position:213-516
               
               
               Cow position:chr26:23623811-23624119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):107, 24

               
               
               Conread position:213-624
               
               
               Cow position:chr26:21418217-21418637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 117

               
               
               Conread position:214-436
               
               
               Cow position:chr26:18381537-18381316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):88, 27

               
               
               Conread position:214-617
               
               
               Cow position:chr26:34060568-34060155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:269
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):96, 18

               
               
               Conread position:214-632
               
               
               Cow position:chr26:35704612-35704193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:282
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):10, 89

               
               
               Conread position:214-645
               
               
               Cow position:chr26:20291459-20291888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:286
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):107, 198

               
               
               Conread position:215-574
               
               
               Cow position:chr26:33074262-33074634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:261
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):23, 134

               
               
               Conread position:215-593
               
               
               Cow position:chr26:586643-587026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:279
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):83, 16

               
               
               Conread position:215-632
               
               
               Cow position:chr26:2986858-2987264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:270
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):239, 74

               
               
               Conread position:216-325
               
               
               Cow position:chr26:26919769-26919659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:89
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:216-346
               
               
               Cow position:chr26:8889890-8890022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:216-404
               
               
               Cow position:chr26:3930300-3930496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):92, 20

               
               
               Conread position:216-428
               
               
               Cow position:chr26:16795979-16796196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):22, 130

               
               
               Conread position:216-438
               
               
               Cow position:chr26:19146135-19145902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):103, 144

               
               
               Conread position:216-585
               
               
               Cow position:chr26:3192214-3192600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:274
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):23, 49

               
               
               Conread position:216-630
               
               
               Cow position:chr26:21243318-21242912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):284, 104

               
               
               Conread position:216-632
               
               
               Cow position:chr26:9849894-9850286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:280
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):282, 53

               
               
               Conread position:216-632
               
               
               Cow position:chr26:9853404-9853796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:278
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):282, 53

               
               
               Conread position:216-632
               
               
               Cow position:chr26:17057907-17057489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:287
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):27, 128

               
               
               Conread position:216-632
               
               
               Cow position:chr26:19459928-19459479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 313

               
               
               Conread position:216-632
               
               
               Cow position:chr26:23000802-23001238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:281
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):15, 253

               
               
               Conread position:216-632
               
               
               Cow position:chr26:23096960-23097371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 101

               
               
               Conread position:216-632
               
               
               Cow position:chr26:26887904-26888327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:287
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):22, 135

               
               
               Conread position:217-406
               
               
               Cow position:chr26:28247079-28246883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:217-539
               
               
               Cow position:chr26:27304636-27304309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:216
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):25, 13

               
               
               Conread position:217-632
               
               
               Cow position:chr26:4854774-4854344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 129

               
               
               Conread position:217-632
               
               
               Cow position:chr26:32955416-32955817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:269
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):200, 15

               
               
               Conread position:218-401
               
               
               Cow position:chr26:12028005-12028196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):103, 131

               
               
               Conread position:218-406
               
               
               Cow position:chr26:17212427-17212228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:218-414
               
               
               Cow position:chr26:7224121-7224316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):13, 89

               
               
               Conread position:218-450
               
               
               Cow position:chr26:32830312-32830069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):103, 14

               
               
               Conread position:218-582
               
               
               Cow position:chr26:23848565-23848945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:251
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):15, 137

               
               
               Conread position:218-585
               
               
               Cow position:chr26:22348783-22349158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:252
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):96, 30

               
               
               Conread position:218-645
               
               
               Cow position:chr26:6794377-6793934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:307
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):19, 47

               
               
               Conread position:219-541
               
               
               Cow position:chr26:30861516-30861848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):12, 142

               
               
               Conread position:219-597
               
               
               Cow position:chr26:20260807-20260419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:270
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):100, 9

               
               
               Conread position:219-624
               
               
               Cow position:chr26:25737675-25737286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:287
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):19, 45

               
               
               Conread position:219-632
               
               
               Cow position:chr26:16550217-16549787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 51

               
               
               Conread position:221-397
               
               
               Cow position:chr26:27482334-27482521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):18, 131

               
               
               Conread position:221-634
               
               
               Cow position:chr26:22892222-22892635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:284
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):92, 11

               
               
               Conread position:222-636
               
               
               Cow position:chr26:19111119-19110705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:283
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):192, 80

               
               
               Conread position:224-403
               
               
               Cow position:chr26:21822823-21823006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):12, 91

               
               
               Conread position:225-631
               
               
               Cow position:chr26:798084-798490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 82

               
               
               Conread position:225-632
               
               
               Cow position:chr26:33856973-33857390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:280
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):97, 52

               
               
               Conread position:227-632
               
               
               Cow position:chr26:32815568-32815968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:271
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):65, 231

               
               
               Conread position:228-403
               
               
               Cow position:chr26:21279741-21279922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):10, 100

               
               
               Conread position:228-433
               
               
               Cow position:chr26:9099313-9099527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):8, 118

               
               
               Conread position:228-617
               
               
               Cow position:chr26:830034-829630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:277
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):8, 137

               
               
               Conread position:228-625
               
               
               Cow position:chr26:35449276-35448877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 36

               
               
               Conread position:228-632
               
               
               Cow position:chr26:4363520-4363111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:285
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):8, 42

               
               
               Conread position:228-632
               
               
               Cow position:chr26:6714079-6714476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 120

               
               
               Conread position:228-632
               
               
               Cow position:chr26:31856928-31856512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:274
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):8, 128

               
               
               Conread position:229-633
               
               
               Cow position:chr26:3707018-3706606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:295
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):70, 35

               
               
               Conread position:232-401
               
               
               Cow position:chr26:1041218-1041040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):85, 116

               
               
               Conread position:232-403
               
               
               Cow position:chr26:31382530-31382359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):97, 109

               
               
               Conread position:232-417
               
               
               Cow position:chr26:12807090-12807274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):81, 34

               
               
               Conread position:232-421
               
               
               Cow position:chr26:10608794-10608603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):9, 115

               
               
               Conread position:232-452
               
               
               Cow position:chr26:2701769-2702000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):87, 126

               
               
               Conread position:232-452
               
               
               Cow position:chr26:34610971-34611195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):88, 73

               
               
               Conread position:232-523
               
               
               Cow position:chr26:8306614-8306311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):82, 124

               
               
               Conread position:232-562
               
               
               Cow position:chr26:33253101-33253444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):71, 84

               
               
               Conread position:232-578
               
               
               Cow position:chr26:32834358-32834713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):75, 120

               
               
               Conread position:232-627
               
               
               Cow position:chr26:12669395-12669010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:264
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):182, 52

               
               
               Conread position:232-631
               
               
               Cow position:chr26:4584996-4585402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:277
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):93, 170

               
               
               Conread position:232-631
               
               
               Cow position:chr26:9604771-9604369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:269
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):36, 106

               
               
               Conread position:232-632
               
               
               Cow position:chr26:7642358-7642770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:265
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):83, 123

               
               
               Conread position:232-632
               
               
               Cow position:chr26:10764430-10764026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:287
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):87, 126

               
               
               Conread position:232-632
               
               
               Cow position:chr26:21636836-21637230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:271
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):151, 75

               
               
               Conread position:232-632
               
               
               Cow position:chr26:25526462-25526053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 110

               
               
               Conread position:233-580
               
               
               Cow position:chr26:31633946-31633585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:248
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):116, 102

               
               
               Conread position:234-588
               
               
               Cow position:chr26:33456314-33456645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:235-561
               
               
               Cow position:chr26:34661059-34660722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):78, 13

               
               
               Conread position:235-631
               
               
               Cow position:chr26:4167137-4167548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 117

               
               
               Conread position:236-421
               
               
               Cow position:chr26:16585639-16585456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):88, 56

               
               
               Conread position:236-560
               
               
               Cow position:chr26:12893218-12893542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:237
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):70, 109

               
               
               Conread position:236-609
               
               
               Cow position:chr26:22249278-22249652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):163, 83

               
               
               Conread position:236-617
               
               
               Cow position:chr26:29333299-29332912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:260
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):116, 33

               
               
               Conread position:236-627
               
               
               Cow position:chr26:16604485-16604102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:260
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):59, 34

               
               
               Conread position:236-632
               
               
               Cow position:chr26:34108955-34108571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:264
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):167, 45

               
               
               Conread position:237-620
               
               
               Cow position:chr26:32865699-32866069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:247
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):137, 62

               
               
               Conread position:240-645
               
               
               Cow position:chr26:16784032-16783616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:274
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):61, 237

               
               
               Conread position:242-575
               
               
               Cow position:chr26:14905611-14905946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):163, 64

               
               
               Conread position:242-630
               
               
               Cow position:chr26:33045272-33044890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:268
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):180, 45

               
               
               Conread position:242-632
               
               
               Cow position:chr26:33011475-33011856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:262
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):172, 51

               
               
               Conread position:242-633
               
               
               Cow position:chr26:35357786-35357401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:256
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):65, 109

               
               
               Conread position:242-639
               
               
               Cow position:chr26:21860008-21859625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:269
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):173, 49

               
               
               Conread position:246-632
               
               
               Cow position:chr26:13802310-13801918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:267
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):67, 164

               
               
               Conread position:246-632
               
               
               Cow position:chr26:14174505-14174103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:272
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):79, 115

               
               
               Conread position:246-632
               
               
               Cow position:chr26:31702014-31701622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:268
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):82, 41

               
               
               Conread position:246-632
               
               
               Cow position:chr26:32897678-32898064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 61

               
               
               Conread position:247-550
               
               
               Cow position:chr26:23671619-23671302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:217
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):68, 100

               
               
               Conread position:247-632
               
               
               Cow position:chr26:27491295-27491698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:258
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):51, 205

               
               
               Conread position:249-645
               
               
               Cow position:chr26:14950948-14951353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:282
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):66, 14

               
               
               Conread position:262-645
               
               
               Cow position:chr26:32670313-32670698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:261
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):58, 73

               
               
               Conread position:267-596
               
               
               Cow position:chr26:31903350-31903007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:241
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):54, 91

               
               
               Conread position:271-590
               
               
               Cow position:chr26:34256473-34256153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):103, 69

               
               
               Conread position:271-631
               
               
               Cow position:chr26:17148875-17148508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:239
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):54, 28

               
               
               Conread position:271-632
               
               
               Cow position:chr26:12154960-12155303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:244
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):103, 32

               
               
               Conread position:276-628
               
               
               Cow position:chr26:24629907-24629555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:247
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):50, 85

               
               
               Conread position:287-632
               
               
               Cow position:chr26:8353126-8352765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:250
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):9, 59

               
               
               Conread position:291-633
               
               
               Cow position:chr26:16922088-16921750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:232
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):20, 49

               
               
               Conread position:297-632
               
               
               Cow position:chr26:9104130-9104474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):8, 51

               
               
               Conread position:298-622
               
               
               Cow position:chr26:32672284-32672623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:230
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):36, 44

               
               
               Conread position:298-632
               
               
               Cow position:chr26:13021000-13021342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:231
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):25, 14

               
               
               Conread position:298-632
               
               
               Cow position:chr26:25394182-25393837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:245
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):112, 45

               
               
               Conread position:299-625
               
               
               Cow position:chr26:14175425-14175095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):14, 43

               
               
               Conread position:299-630
               
               
               Cow position:chr26:8699906-8700241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):109, 18

               
               
               Conread position:299-632
               
               
               Cow position:chr26:11263781-11263444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:240
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):36, 43

               
               
               Conread position:300-616
               
               
               Cow position:chr26:22354557-22354236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:227
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):13, 109

               
               
               Conread position:309-632
               
               
               Cow position:chr26:26466600-26466913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):190, 26

               
               
               Conread position:318-616
               
               
               Cow position:chr26:30568540-30568833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:216
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):102, 31

               
               
               Conread position:319-631
               
               
               Cow position:chr26:32553813-32553489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):44, 172

               
               
               Conread position:319-645
               
               
               Cow position:chr26:15200393-15200723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:230
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):7, 23

               
               
               Conread position:319-645
               
               
               Cow position:chr26:31605529-31605201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:221
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):71, 89

               
               
               Conread position:320-559
               
               
               Cow position:chr26:7314986-7315222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):38, 136

               
               
               Conread position:320-632
               
               
               Cow position:chr26:5246356-5246681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):14, 22

               
               
               Conread position:320-632
               
               
               Cow position:chr26:32058768-32058459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:201
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):116, 21

               
               
               Conread position:320-632
               
               
               Cow position:chr26:33566922-33567236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):86, 146

               
               
               Conread position:321-632
               
               
               Cow position:chr26:613552-613865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):13, 21

               
               
               Conread position:323-627
               
               
               Cow position:chr26:2531071-2531363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):84, 18

               
               
               Conread position:323-627
               
               
               Cow position:chr26:6252974-6252659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:223
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):83, 26

               
               
               Conread position:323-632
               
               
               Cow position:chr26:19774181-19774497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):85, 18

               
               
               Conread position:328-631
               
               
               Cow position:chr26:32683229-32682922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):83, 13

               
               
               Conread position:333-632
               
               
               Cow position:chr26:11134583-11134889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):89, 8

               
               
               Conread position:340-632
               
               
               Cow position:chr26:6005955-6006239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):74, 31

               
               
               Conread position:344-631
               
               
               Cow position:chr26:30127926-30128211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):19, 28

               
               
               Conread position:351-630
               
               
               Cow position:chr26:30034327-30034596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):63, 56

               
               
               Conread position:355-632
               
               
               Cow position:chr26:21992189-21991919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:192
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):50, 97

               
               
               Conread position:356-588
               
               
               Cow position:chr26:14578413-14578177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):50, 98

               
               
               Conread position:361-629
               
               
               Cow position:chr26:18917991-18918261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):42, 140

               
               
               Conread position:361-632
               
               
               Cow position:chr26:26758-27021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):87, 168

               
               
               Conread position:361-650
               
               
               Cow position:chr26:23599715-23600003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):53, 46

               
               
               Conread position:372-632
               
               
               Cow position:chr26:1587655-1587407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):42, 35

               
               
               Conread position:373-632
               
               
               Cow position:chr26:6475358-6475621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):31, 89

               
               
               Conread position:373-645
               
               
               Cow position:chr26:8745757-8746038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):68, 26

               
               
               Conread position:384-632
               
               
               Cow position:chr26:19648977-19648735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):35, 25

               
               
               Conread position:394-628
               
               
               Cow position:chr26:31779528-31779285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:175
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):22, 59

               
               
               Conread position:404-632
               
               
               Cow position:chr26:21351724-21351494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):85, 8

               
               
               Conread position:411-632
               
               
               Cow position:chr26:3181912-3182142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:411-632
               
               
               Cow position:chr26:6447570-6447800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:413-632
               
               
               Cow position:chr26:23925960-23926171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):92, 38

               
               
               Conread position:454-632
               
               
               Cow position:chr26:8186636-8186457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):40, 9

               
               
               Conread position:456-632
               
               
               Cow position:chr26:32026381-32026563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:458-632
               
               
               Cow position:chr26:20846609-20846430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:458-637
               
               
               Cow position:chr26:18692407-18692236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):40, 109

               
               
               Conread position:463-632
               
               
               Cow position:chr26:32013606-32013438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):37, 131

               
               
               Conread position:467-632
               
               
               Cow position:chr26:28243645-28243812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):66, 130

               
               
               Conread position:470-632
               
               
               Cow position:chr26:16166946-16167106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):70, 28

               
               
               Conread position:470-632
               
               
               Cow position:chr26:28442038-28442201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):75, 15

               
               
               Conread position:471-632
               
               
               Cow position:chr26:30806535-30806705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:477-632
               
               
               Cow position:chr26:5988762-5988914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):20, 94

               
               
               Conread position:478-632
               
               
               Cow position:chr26:6188257-6188103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):25, 59

               
               
               Conread position:481-632
               
               
               Cow position:chr26:6793903-6793748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:481-632
               
               
               Cow position:chr26:12807555-12807710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:484-617
               
               
               Cow position:chr26:23315725-23315588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:104
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:493-631
               
               
               Cow position:chr26:32652780-32652918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:493-632
               
               
               Cow position:chr26:33744840-33744696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:493-633
               
               
               Cow position:chr26:7525522-7525662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:495-620
               
               
               Cow position:chr26:27761704-27761830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:495-621
               
               
               Cow position:chr26:27594576-27594453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):46, 95

               
               
               Conread position:495-631
               
               
               Cow position:chr26:9867173-9867307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:495-631
               
               
               Cow position:chr26:34847686-34847550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:101
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr26:5307080-5306939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr26:13270729-13270871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr26:19447480-19447620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:495-644
               
               
               Cow position:chr26:20448910-20448764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:118
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):48, 59

               
               
               Conread position:498-631
               
               
               Cow position:chr26:31062142-31062008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):43, 11

               
               
               Conread position:501-632
               
               
               Cow position:chr26:14293101-14292971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:501-632
               
               
               Cow position:chr26:24280766-24280636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:504-629
               
               
               Cow position:chr26:26670811-26670937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:504-633
               
               
               Cow position:chr26:13706069-13706193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:505-632
               
               
               Cow position:chr26:28446483-28446362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:104
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):38, 24

               
               
               Conread position:505-632
               
               
               Cow position:chr26:30751928-30752057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:101
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:187-593
               
               
               Cow position:chr27:8168713-8168302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:285
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):61, 81

               
               
               Conread position:189-633
               
               
               Cow position:chr27:15669060-15668599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:302
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):34, 8

               
               
               Conread position:193-326
               
               
               Cow position:chr27:21054177-21054308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:102
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:200-523
               
               
               Cow position:chr27:31151108-31151434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):21, 34

               
               
               Conread position:204-620
               
               
               Cow position:chr27:22513948-22513520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:290
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):123, 23

               
               
               Conread position:206-631
               
               
               Cow position:chr27:7935428-7934998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:294
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):39, 22

               
               
               Conread position:206-632
               
               
               Cow position:chr27:24228071-24227627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:308
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):68, 25

               
               
               Conread position:208-459
               
               
               Cow position:chr27:22245375-22245619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):197, 34

               
               
               Conread position:208-633
               
               
               Cow position:chr27:15453945-15454379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:287
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):19, 59

               
               
               Conread position:209-596
               
               
               Cow position:chr27:4858885-4858518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:263
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):28, 21

               
               
               Conread position:209-630
               
               
               Cow position:chr27:20637326-20636916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:288
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):13, 90

               
               
               Conread position:210-412
               
               
               Cow position:chr27:31248874-31248668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):18, 146

               
               
               Conread position:210-570
               
               
               Cow position:chr27:22386621-22386974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):24, 98

               
               
               Conread position:210-632
               
               
               Cow position:chr27:25809777-25809356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:290
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):71, 16

               
               
               Conread position:211-405
               
               
               Cow position:chr27:31386895-31386695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):9, 23

               
               
               Conread position:211-563
               
               
               Cow position:chr27:28896612-28896972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:252
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):28, 141

               
               
               Conread position:211-631
               
               
               Cow position:chr27:16704987-16705412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:286
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):28, 137

               
               
               Conread position:211-632
               
               
               Cow position:chr27:16284227-16284639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:291
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):173, 35

               
               
               Conread position:212-578
               
               
               Cow position:chr27:26226550-26226178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:264
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):109, 30

               
               
               Conread position:212-588
               
               
               Cow position:chr27:16275941-16275552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:262
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):107, 17

               
               
               Conread position:212-632
               
               
               Cow position:chr27:26428393-26427962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 150

               
               
               Conread position:213-326
               
               
               Cow position:chr27:4487042-4486929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:91
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:213-420
               
               
               Cow position:chr27:9977424-9977636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):75, 52

               
               
               Conread position:213-627
               
               
               Cow position:chr27:29431212-29431622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:274
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):19, 130

               
               
               Conread position:213-632
               
               
               Cow position:chr27:23632347-23632768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:297
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):90, 48

               
               
               Conread position:214-627
               
               
               Cow position:chr27:7346409-7346822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:289
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):68, 147

               
               
               Conread position:214-632
               
               
               Cow position:chr27:27020357-27019934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 57

               
               
               Conread position:215-385
               
               
               Cow position:chr27:4195297-4195463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):105, 16

               
               
               Conread position:215-397
               
               
               Cow position:chr27:23069842-23070022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):91, 128

               
               
               Conread position:215-411
               
               
               Cow position:chr27:20127555-20127356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):110, 16

               
               
               Conread position:215-420
               
               
               Cow position:chr27:11982908-11982693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):104, 144

               
               
               Conread position:215-450
               
               
               Cow position:chr27:10598729-10598975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):100, 16

               
               
               Conread position:215-451
               
               
               Cow position:chr27:26437382-26437135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):24, 133

               
               
               Conread position:215-620
               
               
               Cow position:chr27:22614598-22614989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:270
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):167, 16

               
               
               Conread position:215-632
               
               
               Cow position:chr27:13251767-13252176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 48

               
               
               Conread position:215-632
               
               
               Cow position:chr27:19546781-19546336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:304
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):84, 143

               
               
               Conread position:215-632
               
               
               Cow position:chr27:23929717-23930131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:281
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):15, 98

               
               
               Conread position:215-632
               
               
               Cow position:chr27:26441288-26440890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:276
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):281, 13

               
               
               Conread position:215-632
               
               
               Cow position:chr27:31373232-31372813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:286
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):141, 112

               
               
               Conread position:215-634
               
               
               Cow position:chr27:19669063-19668620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:299
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):101, 16

               
               
               Conread position:216-345
               
               
               Cow position:chr27:31479015-31479143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:216-412
               
               
               Cow position:chr27:18791773-18791567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):103, 142

               
               
               Conread position:216-413
               
               
               Cow position:chr27:22792578-22792775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):23, 91

               
               
               Conread position:216-414
               
               
               Cow position:chr27:11349026-11349223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):97, 50

               
               
               Conread position:216-420
               
               
               Cow position:chr27:13204206-13204410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):91, 173

               
               
               Conread position:216-424
               
               
               Cow position:chr27:19452742-19452958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):93, 14

               
               
               Conread position:216-428
               
               
               Cow position:chr27:6162665-6162447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):21, 109

               
               
               Conread position:216-597
               
               
               Cow position:chr27:5744598-5745000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:269
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):66, 13

               
               
               Conread position:216-597
               
               
               Cow position:chr27:16103553-16103935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:265
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):91, 16

               
               
               Conread position:216-625
               
               
               Cow position:chr27:11480897-11480470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 130

               
               
               Conread position:216-629
               
               
               Cow position:chr27:22427097-22426665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:285
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):15, 39

               
               
               Conread position:216-630
               
               
               Cow position:chr27:17397709-17397282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 16

               
               
               Conread position:216-632
               
               
               Cow position:chr27:2592281-2592708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 12

               
               
               Conread position:216-632
               
               
               Cow position:chr27:15867132-15867557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 130

               
               
               Conread position:216-632
               
               
               Cow position:chr27:17472555-17472979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:294
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):20, 12

               
               
               Conread position:216-632
               
               
               Cow position:chr27:22035631-22035207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 105

               
               
               Conread position:216-632
               
               
               Cow position:chr27:27003521-27003115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:291
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):18, 38

               
               
               Conread position:216-632
               
               
               Cow position:chr27:27554936-27554520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:300
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):112, 15

               
               
               Conread position:217-404
               
               
               Cow position:chr27:16246549-16246737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):21, 32

               
               
               Conread position:217-406
               
               
               Cow position:chr27:31515810-31515612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):75, 15

               
               
               Conread position:217-582
               
               
               Cow position:chr27:19500493-19500118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:248
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):101, 11

               
               
               Conread position:217-624
               
               
               Cow position:chr27:19496620-19497033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:268
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):20, 158

               
               
               Conread position:217-624
               
               
               Cow position:chr27:30374840-30374412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:287
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):77, 153

               
               
               Conread position:217-628
               
               
               Cow position:chr27:20045640-20046040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:293
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):102, 15

               
               
               Conread position:217-629
               
               
               Cow position:chr27:4944764-4944365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:282
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):166, 81

               
               
               Conread position:217-629
               
               
               Cow position:chr27:22547646-22547241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:277
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):187, 103

               
               
               Conread position:217-632
               
               
               Cow position:chr27:4390516-4390088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:286
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):19, 48

               
               
               Conread position:217-632
               
               
               Cow position:chr27:18543733-18544164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:297
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):109, 14

               
               
               Conread position:217-632
               
               
               Cow position:chr27:19387764-19388185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:283
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):76, 20

               
               
               Conread position:217-632
               
               
               Cow position:chr27:26224513-26224102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:280
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):191, 19

               
               
               Conread position:217-632
               
               
               Cow position:chr27:26509414-26508991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 133

               
               
               Conread position:218-420
               
               
               Cow position:chr27:26794042-26793830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):19, 129

               
               
               Conread position:218-631
               
               
               Cow position:chr27:1353323-1353750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 30

               
               
               Conread position:218-632
               
               
               Cow position:chr27:12515937-12516365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 64

               
               
               Conread position:218-632
               
               
               Cow position:chr27:18507390-18507798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:299
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):45, 11

               
               
               Conread position:218-632
               
               
               Cow position:chr27:28922152-28921730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 141

               
               
               Conread position:218-632
               
               
               Cow position:chr27:30407301-30406865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:293
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):59, 10

               
               
               Conread position:218-632
               
               
               Cow position:chr27:30582481-30582904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:283
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):11, 53

               
               
               Conread position:218-645
               
               
               Cow position:chr27:15865972-15866403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:298
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):101, 46

               
               
               Conread position:218-645
               
               
               Cow position:chr27:24446395-24445977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:277
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):367, 86

               
               
               Conread position:219-326
               
               
               Cow position:chr27:6751921-6752029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:219-386
               
               
               Cow position:chr27:19074281-19074105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):18, 130

               
               
               Conread position:219-450
               
               
               Cow position:chr27:26173239-26173482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):9, 143

               
               
               Conread position:219-451
               
               
               Cow position:chr27:27740549-27740305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):100, 126

               
               
               Conread position:219-587
               
               
               Cow position:chr27:7615326-7614967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):18, 76

               
               
               Conread position:219-589
               
               
               Cow position:chr27:27442420-27442047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:262
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):14, 128

               
               
               Conread position:219-631
               
               
               Cow position:chr27:6550204-6550616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 22

               
               
               Conread position:219-632
               
               
               Cow position:chr27:15925090-15925501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:280
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):100, 22

               
               
               Conread position:219-632
               
               
               Cow position:chr27:21408830-21408386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:286
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):13, 148

               
               
               Conread position:219-632
               
               
               Cow position:chr27:28932059-28931621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 128

               
               
               Conread position:219-632
               
               
               Cow position:chr27:30844309-30843912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:271
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):187, 13

               
               
               Conread position:219-633
               
               
               Cow position:chr27:10307558-10307128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 11

               
               
               Conread position:219-633
               
               
               Cow position:chr27:28518042-28518453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:297
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):97, 12

               
               
               Conread position:219-635
               
               
               Cow position:chr27:20749255-20748856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:291
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):98, 9

               
               
               Conread position:219-645
               
               
               Cow position:chr27:20354343-20354759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:289
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):17, 88

               
               
               Conread position:220-325
               
               
               Cow position:chr27:26467816-26467711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:86
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:220-405
               
               
               Cow position:chr27:11208812-11208618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):107, 139

               
               
               Conread position:220-405
               
               
               Cow position:chr27:19741646-19741472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:220-449
               
               
               Cow position:chr27:19508757-19508996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):95, 228

               
               
               Conread position:220-625
               
               
               Cow position:chr27:13875476-13875894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:294
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):18, 133

               
               
               Conread position:220-632
               
               
               Cow position:chr27:13639246-13638826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:296
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):11, 146

               
               
               Conread position:220-632
               
               
               Cow position:chr27:21669369-21668958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:273
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):12, 232

               
               
               Conread position:220-632
               
               
               Cow position:chr27:22220293-22220720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:276
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):18, 333

               
               
               Conread position:220-632
               
               
               Cow position:chr27:28002058-28001652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):183, 86

               
               
               Conread position:220-632
               
               
               Cow position:chr27:30914750-30915168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 133

               
               
               Conread position:221-420
               
               
               Cow position:chr27:26400973-26400768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):9, 73

               
               
               Conread position:221-615
               
               
               Cow position:chr27:7649844-7649433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:297
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):86, 11

               
               
               Conread position:221-645
               
               
               Cow position:chr27:1637179-1636762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:281
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):185, 11

               
               
               Conread position:222-632
               
               
               Cow position:chr27:7959082-7958669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:287
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):98, 19

               
               
               Conread position:225-624
               
               
               Cow position:chr27:16786581-16786985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 101

               
               
               Conread position:226-632
               
               
               Cow position:chr27:2957166-2957574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:288
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):11, 119

               
               
               Conread position:226-632
               
               
               Cow position:chr27:28206554-28206964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:277
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):11, 115

               
               
               Conread position:227-420
               
               
               Cow position:chr27:18435378-18435182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):87, 117

               
               
               Conread position:227-589
               
               
               Cow position:chr27:20101119-20101490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:246
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):91, 133

               
               
               Conread position:228-420
               
               
               Cow position:chr27:18688658-18688456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):88, 9

               
               
               Conread position:228-436
               
               
               Cow position:chr27:19932818-19933034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):8, 187

               
               
               Conread position:228-534
               
               
               Cow position:chr27:26112165-26111841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):100, 131

               
               
               Conread position:228-617
               
               
               Cow position:chr27:426723-427124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:267
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):87, 193

               
               
               Conread position:228-620
               
               
               Cow position:chr27:2930839-2930442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:274
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):8, 130

               
               
               Conread position:228-626
               
               
               Cow position:chr27:8353248-8353637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:267
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):28, 72

               
               
               Conread position:228-628
               
               
               Cow position:chr27:30872305-30871897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 68

               
               
               Conread position:228-631
               
               
               Cow position:chr27:8062599-8062191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:274
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):15, 121

               
               
               Conread position:228-632
               
               
               Cow position:chr27:6541386-6541791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:274
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):12, 119

               
               
               Conread position:228-632
               
               
               Cow position:chr27:15870911-15871324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:275
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):8, 133

               
               
               Conread position:228-632
               
               
               Cow position:chr27:18031318-18030890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:286
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):8, 128

               
               
               Conread position:228-633
               
               
               Cow position:chr27:14670627-14670213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:280
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):81, 112

               
               
               Conread position:229-631
               
               
               Cow position:chr27:23452217-23452645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:288
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):74, 117

               
               
               Conread position:230-632
               
               
               Cow position:chr27:30764787-30765198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:277
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):13, 358

               
               
               Conread position:231-466
               
               
               Cow position:chr27:10323600-10323837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):115, 58

               
               
               Conread position:232-397
               
               
               Cow position:chr27:11145639-11145807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):92, 110

               
               
               Conread position:232-412
               
               
               Cow position:chr27:20048394-20048576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):89, 82

               
               
               Conread position:232-438
               
               
               Cow position:chr27:10404360-10404143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):96, 128

               
               
               Conread position:232-624
               
               
               Cow position:chr27:6787709-6788117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:278
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):42, 129

               
               
               Conread position:232-628
               
               
               Cow position:chr27:15315280-15315656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:281
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):81, 34

               
               
               Conread position:232-628
               
               
               Cow position:chr27:23128222-23128617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:232-629
               
               
               Cow position:chr27:16478565-16478183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:256
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):165, 28

               
               
               Conread position:232-630
               
               
               Cow position:chr27:22439894-22440304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:282
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):58, 112

               
               
               Conread position:232-631
               
               
               Cow position:chr27:7412150-7412548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:278
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):12, 181

               
               
               Conread position:232-632
               
               
               Cow position:chr27:6499815-6500231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:287
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):89, 127

               
               
               Conread position:232-632
               
               
               Cow position:chr27:8962484-8962103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:272
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):105, 32

               
               
               Conread position:232-632
               
               
               Cow position:chr27:10979617-10980030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:286
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):95, 146

               
               
               Conread position:232-632
               
               
               Cow position:chr27:22171059-22171465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:272
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):61, 79

               
               
               Conread position:232-632
               
               
               Cow position:chr27:28496613-28496208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:261
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):87, 15

               
               
               Conread position:232-632
               
               
               Cow position:chr27:29831951-29831520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:293
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):69, 135

               
               
               Conread position:232-632
               
               
               Cow position:chr27:30868994-30868572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:294
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):89, 237

               
               
               Conread position:232-634
               
               
               Cow position:chr27:27438751-27438336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:283
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):87, 127

               
               
               Conread position:232-636
               
               
               Cow position:chr27:10582128-10582536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:271
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):88, 20

               
               
               Conread position:232-643
               
               
               Cow position:chr27:19896520-19896932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:282
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):20, 40

               
               
               Conread position:232-645
               
               
               Cow position:chr27:27389270-27388849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:271
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):81, 302

               
               
               Conread position:233-405
               
               
               Cow position:chr27:19576565-19576387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:233-420
               
               
               Cow position:chr27:20484491-20484681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):80, 119

               
               
               Conread position:233-434
               
               
               Cow position:chr27:3518260-3518472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):84, 128

               
               
               Conread position:233-437
               
               
               Cow position:chr27:4414057-4413848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):71, 14

               
               
               Conread position:233-631
               
               
               Cow position:chr27:28018081-28018502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:284
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):52, 250

               
               
               Conread position:233-632
               
               
               Cow position:chr27:18558116-18558530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 125

               
               
               Conread position:233-632
               
               
               Cow position:chr27:27245604-27245185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:266
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):66, 25

               
               
               Conread position:234-414
               
               
               Cow position:chr27:29308102-29308290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):85, 118

               
               
               Conread position:234-631
               
               
               Cow position:chr27:6453986-6454380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:267
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):36, 67

               
               
               Conread position:234-632
               
               
               Cow position:chr27:20283403-20283798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:277
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):64, 86

               
               
               Conread position:234-632
               
               
               Cow position:chr27:24331473-24331892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 128

               
               
               Conread position:235-404
               
               
               Cow position:chr27:31157570-31157747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):84, 123

               
               
               Conread position:235-558
               
               
               Cow position:chr27:18646389-18646053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):82, 117

               
               
               Conread position:235-632
               
               
               Cow position:chr27:299614-299217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:274
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):69, 55

               
               
               Conread position:236-418
               
               
               Cow position:chr27:17102661-17102845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):85, 63

               
               
               Conread position:236-504
               
               
               Cow position:chr27:11561536-11561811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):89, 21

               
               
               Conread position:236-623
               
               
               Cow position:chr27:14343674-14343310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:268
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):142, 39

               
               
               Conread position:236-626
               
               
               Cow position:chr27:3306547-3306936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:267
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):162, 70

               
               
               Conread position:236-631
               
               
               Cow position:chr27:12596543-12596924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:268
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):76, 106

               
               
               Conread position:236-632
               
               
               Cow position:chr27:28190430-28190051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:236-632
               
               
               Cow position:chr27:29494137-29493750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:260
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):66, 53

               
               
               Conread position:237-632
               
               
               Cow position:chr27:27050124-27049746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:260
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):162, 29

               
               
               Conread position:240-632
               
               
               Cow position:chr27:23554564-23554153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 111

               
               
               Conread position:242-421
               
               
               Cow position:chr27:1184406-1184223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):71, 17

               
               
               Conread position:242-428
               
               
               Cow position:chr27:19557160-19557348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):60, 13

               
               
               Conread position:242-630
               
               
               Cow position:chr27:8630106-8629707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:267
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):72, 43

               
               
               Conread position:242-632
               
               
               Cow position:chr27:15409258-15408877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:263
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):166, 57

               
               
               Conread position:243-632
               
               
               Cow position:chr27:22330890-22330503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:250
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):130, 78

               
               
               Conread position:243-645
               
               
               Cow position:chr27:10992142-10992533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):216, 43

               
               
               Conread position:244-528
               
               
               Cow position:chr27:17646386-17646111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):164, 14

               
               
               Conread position:244-631
               
               
               Cow position:chr27:19589247-19589641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:266
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):6, 47

               
               
               Conread position:246-401
               
               
               Cow position:chr27:23177541-23177380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):75, 101

               
               
               Conread position:246-405
               
               
               Cow position:chr27:26909817-26909655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):63, 106

               
               
               Conread position:246-559
               
               
               Cow position:chr27:26188598-26188915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):75, 104

               
               
               Conread position:246-632
               
               
               Cow position:chr27:13318206-13317788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 113

               
               
               Conread position:246-632
               
               
               Cow position:chr27:18739145-18739554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:267
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:246-632
               
               
               Cow position:chr27:19685939-19685548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:263
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):59, 25

               
               
               Conread position:246-632
               
               
               Cow position:chr27:26424805-26424419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:252
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):61, 102

               
               
               Conread position:247-645
               
               
               Cow position:chr27:19660700-19661121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:282
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):71, 100

               
               
               Conread position:248-425
               
               
               Cow position:chr27:24755764-24755947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):65, 94

               
               
               Conread position:248-621
               
               
               Cow position:chr27:23890706-23891093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:267
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):77, 214

               
               
               Conread position:249-518
               
               
               Cow position:chr27:23859937-23860221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:249-628
               
               
               Cow position:chr27:26238798-26239187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:256
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):70, 215

               
               
               Conread position:249-632
               
               
               Cow position:chr27:21393719-21393338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:268
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):159, 49

               
               
               Conread position:249-633
               
               
               Cow position:chr27:1768843-1768468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:268
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):71, 15

               
               
               Conread position:254-630
               
               
               Cow position:chr27:20037320-20036964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:255
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):42, 46

               
               
               Conread position:254-632
               
               
               Cow position:chr27:20068196-20067812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:243
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):49, 143

               
               
               Conread position:257-632
               
               
               Cow position:chr27:11815966-11815593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:254
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):67, 92

               
               
               Conread position:271-619
               
               
               Cow position:chr27:7731457-7731095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:243
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):17, 73

               
               
               Conread position:277-628
               
               
               Cow position:chr27:22418962-22418602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:244
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):37, 134

               
               
               Conread position:278-638
               
               
               Cow position:chr27:26807756-26807392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:242
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):42, 64

               
               
               Conread position:291-628
               
               
               Cow position:chr27:20553554-20553879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):23, 51

               
               
               Conread position:298-632
               
               
               Cow position:chr27:4672842-4673187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:224
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):42, 12

               
               
               Conread position:298-632
               
               
               Cow position:chr27:30354516-30354177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:238
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):22, 110

               
               
               Conread position:299-621
               
               
               Cow position:chr27:30359238-30359554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):108, 42

               
               
               Conread position:299-632
               
               
               Cow position:chr27:20795622-20795950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):13, 33

               
               
               Conread position:299-645
               
               
               Cow position:chr27:22723863-22723527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):25, 43

               
               
               Conread position:300-630
               
               
               Cow position:chr27:1291022-1290700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):21, 44

               
               
               Conread position:300-631
               
               
               Cow position:chr27:26150849-26151185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):108, 154

               
               
               Conread position:300-632
               
               
               Cow position:chr27:25276970-25277303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):21, 46

               
               
               Conread position:303-632
               
               
               Cow position:chr27:23483062-23483389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:214
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):92, 44

               
               
               Conread position:309-632
               
               
               Cow position:chr27:18593113-18593437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):25, 33

               
               
               Conread position:314-626
               
               
               Cow position:chr27:27270696-27270377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 35

               
               
               Conread position:314-632
               
               
               Cow position:chr27:23882522-23882208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):20, 28

               
               
               Conread position:317-539
               
               
               Cow position:chr27:15215078-15215306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:319-611
               
               
               Cow position:chr27:1122882-1123180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):67, 146

               
               
               Conread position:319-632
               
               
               Cow position:chr27:8942839-8942517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:214
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):7, 23

               
               
               Conread position:319-633
               
               
               Cow position:chr27:24321040-24321357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:210
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):13, 17

               
               
               Conread position:320-632
               
               
               Cow position:chr27:19717766-19718090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):88, 162

               
               
               Conread position:320-632
               
               
               Cow position:chr27:20641482-20641180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):32, 13

               
               
               Conread position:320-632
               
               
               Cow position:chr27:27038986-27038677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:205
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):223, 272

               
               
               Conread position:320-632
               
               
               Cow position:chr27:27064588-27064273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):79, 130

               
               
               Conread position:320-632
               
               
               Cow position:chr27:27641159-27640825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):88, 31

               
               
               Conread position:321-568
               
               
               Cow position:chr27:8263484-8263232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):87, 28

               
               
               Conread position:322-630
               
               
               Cow position:chr27:22454921-22454617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:215
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):92, 19

               
               
               Conread position:322-632
               
               
               Cow position:chr27:21453240-21452903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):84, 13

               
               
               Conread position:323-632
               
               
               Cow position:chr27:4386206-4385900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):84, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr27:12246509-12246825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):73, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr27:15643030-15643342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):99, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr27:26413399-26413089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):92, 18

               
               
               Conread position:323-633
               
               
               Cow position:chr27:30988653-30988965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:216
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):83, 18

               
               
               Conread position:324-614
               
               
               Cow position:chr27:715357-715652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):84, 25

               
               
               Conread position:324-632
               
               
               Cow position:chr27:24014884-24014574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):59, 147

               
               
               Conread position:326-618
               
               
               Cow position:chr27:28271292-28270994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):31, 15

               
               
               Conread position:334-632
               
               
               Cow position:chr27:23472124-23472422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):82, 61

               
               
               Conread position:334-632
               
               
               Cow position:chr27:29515979-29515694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):162, 16

               
               
               Conread position:340-632
               
               
               Cow position:chr27:19648071-19647775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):68, 76

               
               
               Conread position:351-580
               
               
               Cow position:chr27:30672676-30672449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):145, 56

               
               
               Conread position:351-632
               
               
               Cow position:chr27:706835-707114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):27, 42

               
               
               Conread position:356-631
               
               
               Cow position:chr27:27844115-27843827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):47, 103

               
               
               Conread position:356-632
               
               
               Cow position:chr27:4812996-4812710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):58, 51

               
               
               Conread position:356-632
               
               
               Cow position:chr27:25379875-25380157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):18, 97

               
               
               Conread position:358-632
               
               
               Cow position:chr27:11081090-11081363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):47, 67

               
               
               Conread position:359-629
               
               
               Cow position:chr27:21351131-21350852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):49, 28

               
               
               Conread position:361-632
               
               
               Cow position:chr27:9090898-9090635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):137, 38

               
               
               Conread position:361-632
               
               
               Cow position:chr27:12278360-12278106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:191
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):110, 46

               
               
               Conread position:361-632
               
               
               Cow position:chr27:12429299-12429575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):182, 46

               
               
               Conread position:361-632
               
               
               Cow position:chr27:30362146-30362409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):212, 33

               
               
               Conread position:362-628
               
               
               Cow position:chr27:9169748-9169482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):50, 25

               
               
               Conread position:362-632
               
               
               Cow position:chr27:815254-815531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:191
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):5, 47

               
               
               Conread position:364-632
               
               
               Cow position:chr27:24999845-24999568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):44, 73

               
               
               Conread position:366-632
               
               
               Cow position:chr27:1058780-1058513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):177, 89

               
               
               Conread position:387-631
               
               
               Cow position:chr27:23070437-23070194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):118, 61

               
               
               Conread position:402-629
               
               
               Cow position:chr27:29283473-29283245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):98, 36

               
               
               Conread position:402-632
               
               
               Cow position:chr27:14902716-14902482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):69, 48

               
               
               Conread position:402-632
               
               
               Cow position:chr27:21569903-21569677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):96, 44

               
               
               Conread position:405-632
               
               
               Cow position:chr27:26398319-26398092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):7, 44

               
               
               Conread position:409-645
               
               
               Cow position:chr27:6058442-6058682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):5, 24

               
               
               Conread position:411-632
               
               
               Cow position:chr27:22268447-22268671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):87, 42

               
               
               Conread position:411-632
               
               
               Cow position:chr27:27040548-27040774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:411-632
               
               
               Cow position:chr27:30670686-30670904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):134, 63

               
               
               Conread position:431-632
               
               
               Cow position:chr27:31499028-31499234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):66, 27

               
               
               Conread position:446-631
               
               
               Cow position:chr27:11255500-11255678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:455-632
               
               
               Cow position:chr27:25790790-25790970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:458-632
               
               
               Cow position:chr27:28038351-28038171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:458-633
               
               
               Cow position:chr27:18434480-18434303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):79, 22

               
               
               Conread position:463-631
               
               
               Cow position:chr27:30177581-30177409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):18, 82

               
               
               Conread position:463-632
               
               
               Cow position:chr27:18215047-18215222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:470-631
               
               
               Cow position:chr27:6523040-6523211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):28, 101

               
               
               Conread position:470-633
               
               
               Cow position:chr27:27550740-27550580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):28, 72

               
               
               Conread position:477-629
               
               
               Cow position:chr27:22498566-22498716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):20, 107

               
               
               Conread position:477-632
               
               
               Cow position:chr27:20591990-20592150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:478-633
               
               
               Cow position:chr27:31147661-31147506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):15, 21

               
               
               Conread position:481-632
               
               
               Cow position:chr27:21419056-21418900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:481-633
               
               
               Cow position:chr27:29250891-29251047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:490-624
               
               
               Cow position:chr27:15859065-15858932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:102
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:494-631
               
               
               Cow position:chr27:26959590-26959455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:495-620
               
               
               Cow position:chr27:13376000-13375877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:495-628
               
               
               Cow position:chr27:19577703-19577837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):19, 50

               
               
               Conread position:495-631
               
               
               Cow position:chr27:2012075-2011937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:111
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):20, 81

               
               
               Conread position:495-631
               
               
               Cow position:chr27:27259637-27259774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr27:1498346-1498480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr27:16620017-16620158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr27:22179765-22179631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):42, 35

               
               
               Conread position:495-632
               
               
               Cow position:chr27:22771780-22771924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:113
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr27:25411490-25411353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):22, 88

               
               
               Conread position:495-632
               
               
               Cow position:chr27:28164377-28164245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:108
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr27:30551026-30551162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr27:30560943-30561079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:495-633
               
               
               Cow position:chr27:30989816-30989676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:104
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:495-636
               
               
               Cow position:chr27:28009032-28008888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:113
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):48, 132

               
               
               Conread position:495-645
               
               
               Cow position:chr27:6073949-6074096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):20, 93

               
               
               Conread position:497-630
               
               
               Cow position:chr27:6674266-6674405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:110
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:497-646
               
               
               Cow position:chr27:16871882-16871735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):36, 46

               
               
               Conread position:502-632
               
               
               Cow position:chr27:1884073-1884203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:503-632
               
               
               Cow position:chr27:13847678-13847805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:98
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:504-632
               
               
               Cow position:chr27:26322388-26322520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:505-632
               
               
               Cow position:chr27:27141633-27141760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:506-632
               
               
               Cow position:chr27:26625165-26625291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):37, 60

               
               
               Conread position:509-632
               
               
               Cow position:chr27:18922493-18922617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:511-632
               
               
               Cow position:chr27:27528316-27528195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:99
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:514-631
               
               
               Cow position:chr27:17926584-17926471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:95
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):29, 56

               
               
               Conread position:524-629
               
               
               Cow position:chr27:26406984-26406877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:91
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):63, 16

               
               
               Conread position:162-632
               
               
               Cow position:chr28:34430152-34430631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:323
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):13, 29

               
               
               Conread position:188-438
               
               
               Cow position:chr28:7131845-7132099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):124, 36

               
               
               Conread position:197-420
               
               
               Cow position:chr28:4936997-4937234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):19, 165

               
               
               Conread position:200-622
               
               
               Cow position:chr28:4881013-4881440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:303
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):37, 6

               
               
               Conread position:201-414
               
               
               Cow position:chr28:10203349-10203135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):13, 34

               
               
               Conread position:204-423
               
               
               Cow position:chr28:19395091-19394881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):101, 23

               
               
               Conread position:204-632
               
               
               Cow position:chr28:12964815-12964373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:288
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):23, 259

               
               
               Conread position:205-421
               
               
               Cow position:chr28:19038783-19039010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):30, 213

               
               
               Conread position:206-629
               
               
               Cow position:chr28:5931574-5931152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:278
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):115, 60

               
               
               Conread position:207-325
               
               
               Cow position:chr28:27941551-27941669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):26, 55

               
               
               Conread position:207-377
               
               
               Cow position:chr28:21263384-21263210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):15, 138

               
               
               Conread position:208-631
               
               
               Cow position:chr28:10888851-10888460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:291
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):35, 18

               
               
               Conread position:208-631
               
               
               Cow position:chr28:20313494-20313072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:285
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):60, 77

               
               
               Conread position:209-632
               
               
               Cow position:chr28:19221918-19222350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:298
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):84, 42

               
               
               Conread position:210-428
               
               
               Cow position:chr28:4163350-4163581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):12, 144

               
               
               Conread position:210-593
               
               
               Cow position:chr28:8291639-8291270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:246
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):68, 61

               
               
               Conread position:211-433
               
               
               Cow position:chr28:17727886-17728106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):32, 111

               
               
               Conread position:211-626
               
               
               Cow position:chr28:10845324-10844920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:290
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):152, 20

               
               
               Conread position:212-322
               
               
               Cow position:chr28:9919942-9920055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:91
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:212-410
               
               
               Cow position:chr28:7964452-7964657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):12, 203

               
               
               Conread position:212-425
               
               
               Cow position:chr28:21008450-21008659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):109, 14

               
               
               Conread position:212-621
               
               
               Cow position:chr28:16419396-16418979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:269
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):85, 16

               
               
               Conread position:212-630
               
               
               Cow position:chr28:23531087-23530664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):195, 51

               
               
               Conread position:213-414
               
               
               Cow position:chr28:5232161-5231952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):44, 18

               
               
               Conread position:213-418
               
               
               Cow position:chr28:11411317-11411524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):11, 19

               
               
               Conread position:213-632
               
               
               Cow position:chr28:5818058-5817642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 15

               
               
               Conread position:214-405
               
               
               Cow position:chr28:3678580-3678387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):97, 18

               
               
               Conread position:214-420
               
               
               Cow position:chr28:14242921-14242701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:214-632
               
               
               Cow position:chr28:3492563-3492989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:277
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):16, 206

               
               
               Conread position:215-406
               
               
               Cow position:chr28:10252694-10252893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):104, 132

               
               
               Conread position:215-412
               
               
               Cow position:chr28:3423998-3423796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):104, 132

               
               
               Conread position:215-420
               
               
               Cow position:chr28:8716159-8716377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):104, 149

               
               
               Conread position:215-424
               
               
               Cow position:chr28:32015009-32014788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):16, 136

               
               
               Conread position:215-481
               
               
               Cow position:chr28:8304464-8304198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):23, 98

               
               
               Conread position:215-533
               
               
               Cow position:chr28:31223333-31223671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:220
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):12, 203

               
               
               Conread position:215-566
               
               
               Cow position:chr28:23296540-23296186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:238
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):98, 127

               
               
               Conread position:215-614
               
               
               Cow position:chr28:11828738-11829129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:272
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):91, 180

               
               
               Conread position:215-620
               
               
               Cow position:chr28:751448-751032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:295
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):104, 13

               
               
               Conread position:215-620
               
               
               Cow position:chr28:4834616-4835038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:274
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):14, 70

               
               
               Conread position:215-624
               
               
               Cow position:chr28:25973763-25973333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:280
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):101, 145

               
               
               Conread position:215-627
               
               
               Cow position:chr28:7145021-7144589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:290
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):102, 142

               
               
               Conread position:215-631
               
               
               Cow position:chr28:33036267-33036669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:276
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):106, 19

               
               
               Conread position:216-389
               
               
               Cow position:chr28:16200523-16200702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):105, 12

               
               
               Conread position:216-404
               
               
               Cow position:chr28:34830373-34830181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):101, 14

               
               
               Conread position:216-420
               
               
               Cow position:chr28:23638892-23638686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):110, 137

               
               
               Conread position:216-420
               
               
               Cow position:chr28:26826442-26826231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):100, 142

               
               
               Conread position:216-425
               
               
               Cow position:chr28:18847781-18847561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):99, 145

               
               
               Conread position:216-438
               
               
               Cow position:chr28:11059711-11059489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):97, 120

               
               
               Conread position:216-442
               
               
               Cow position:chr28:6563672-6563906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):15, 132

               
               
               Conread position:216-512
               
               
               Cow position:chr28:10298062-10297778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):21, 51

               
               
               Conread position:216-539
               
               
               Cow position:chr28:3484807-3484466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:231
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):21, 147

               
               
               Conread position:216-583
               
               
               Cow position:chr28:7439460-7439090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:252
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):20, 106

               
               
               Conread position:216-584
               
               
               Cow position:chr28:29988888-29989269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:256
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):35, 211

               
               
               Conread position:216-618
               
               
               Cow position:chr28:18139251-18139642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:257
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:216-632
               
               
               Cow position:chr28:4884033-4884471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:289
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):107, 126

               
               
               Conread position:216-632
               
               
               Cow position:chr28:5204404-5203995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:281
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):97, 23

               
               
               Conread position:216-632
               
               
               Cow position:chr28:20125002-20124581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:277
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):21, 100

               
               
               Conread position:216-632
               
               
               Cow position:chr28:21868677-21868247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:289
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):108, 199

               
               
               Conread position:216-637
               
               
               Cow position:chr28:7865525-7865115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:276
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):107, 83

               
               
               Conread position:217-385
               
               
               Cow position:chr28:4783386-4783222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:217-399
               
               
               Cow position:chr28:18791253-18791070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):96, 126

               
               
               Conread position:217-412
               
               
               Cow position:chr28:10196650-10196846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):20, 83

               
               
               Conread position:217-617
               
               
               Cow position:chr28:24966605-24966203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:265
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):103, 243

               
               
               Conread position:217-619
               
               
               Cow position:chr28:26982516-26982938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:290
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):23, 13

               
               
               Conread position:217-624
               
               
               Cow position:chr28:23616625-23616206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:283
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):16, 105

               
               
               Conread position:217-627
               
               
               Cow position:chr28:14657935-14657501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 134

               
               
               Conread position:217-628
               
               
               Cow position:chr28:5224924-5224512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:279
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):17, 121

               
               
               Conread position:217-631
               
               
               Cow position:chr28:9426129-9426545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:297
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):14, 102

               
               
               Conread position:217-631
               
               
               Cow position:chr28:11426329-11426749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:278
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):191, 95

               
               
               Conread position:217-632
               
               
               Cow position:chr28:14151448-14151030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:279
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):14, 203

               
               
               Conread position:217-632
               
               
               Cow position:chr28:17637637-17638071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:279
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):20, 215

               
               
               Conread position:217-632
               
               
               Cow position:chr28:30293367-30293794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:291
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):102, 42

               
               
               Conread position:217-632
               
               
               Cow position:chr28:34877753-34878177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:285
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):70, 151

               
               
               Conread position:217-633
               
               
               Cow position:chr28:10606419-10606827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 62

               
               
               Conread position:218-406
               
               
               Cow position:chr28:12628957-12628760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):20, 27

               
               
               Conread position:218-420
               
               
               Cow position:chr28:18797526-18797328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):128, 12

               
               
               Conread position:218-420
               
               
               Cow position:chr28:19994728-19994936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):101, 142

               
               
               Conread position:218-568
               
               
               Cow position:chr28:9812504-9812143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:245
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):13, 115

               
               
               Conread position:218-592
               
               
               Cow position:chr28:1632425-1632819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:273
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):9, 37

               
               
               Conread position:218-632
               
               
               Cow position:chr28:4307673-4308103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 144

               
               
               Conread position:218-632
               
               
               Cow position:chr28:9636241-9636661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:275
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):55, 11

               
               
               Conread position:218-632
               
               
               Cow position:chr28:21103602-21104052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:218-661
               
               
               Cow position:chr28:15263497-15263957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:293
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):13, 145

               
               
               Conread position:219-412
               
               
               Cow position:chr28:5236091-5235900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:219-418
               
               
               Cow position:chr28:13370922-13371133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):97, 202

               
               
               Conread position:219-613
               
               
               Cow position:chr28:616587-616207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:265
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):13, 81

               
               
               Conread position:219-622
               
               
               Cow position:chr28:10669803-10669380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:291
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):98, 13

               
               
               Conread position:219-632
               
               
               Cow position:chr28:4282272-4282696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 128

               
               
               Conread position:219-632
               
               
               Cow position:chr28:11884314-11884727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:277
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):98, 44

               
               
               Conread position:219-645
               
               
               Cow position:chr28:34230448-34230012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 140

               
               
               Conread position:220-323
               
               
               Cow position:chr28:6124042-6124146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:88
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):18, 73

               
               
               Conread position:220-405
               
               
               Cow position:chr28:2825638-2825444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):17, 33

               
               
               Conread position:220-505
               
               
               Cow position:chr28:11814863-11815156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):101, 124

               
               
               Conread position:220-554
               
               
               Cow position:chr28:12672245-12672587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:238
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):99, 140

               
               
               Conread position:220-613
               
               
               Cow position:chr28:11866451-11866855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 125

               
               
               Conread position:220-631
               
               
               Cow position:chr28:21502597-21502191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 10

               
               
               Conread position:220-632
               
               
               Cow position:chr28:11584993-11585412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:277
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):163, 86

               
               
               Conread position:220-645
               
               
               Cow position:chr28:5144296-5144740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 137

               
               
               Conread position:221-386
               
               
               Cow position:chr28:16856891-16857063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):98, 136

               
               
               Conread position:221-405
               
               
               Cow position:chr28:22085330-22085517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):88, 121

               
               
               Conread position:221-415
               
               
               Cow position:chr28:6934962-6935163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):96, 11

               
               
               Conread position:221-567
               
               
               Cow position:chr28:22571467-22571804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:237
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):10, 40

               
               
               Conread position:221-628
               
               
               Cow position:chr28:25700653-25701062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:290
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):18, 45

               
               
               Conread position:221-632
               
               
               Cow position:chr28:13267983-13267577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:290
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):202, 9

               
               
               Conread position:222-454
               
               
               Cow position:chr28:555709-555476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):186, 26

               
               
               Conread position:222-557
               
               
               Cow position:chr28:11346275-11346614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:244
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):87, 132

               
               
               Conread position:223-632
               
               
               Cow position:chr28:23460357-23459940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:288
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):137, 94

               
               
               Conread position:224-539
               
               
               Cow position:chr28:3011054-3011384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:236
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):12, 135

               
               
               Conread position:224-597
               
               
               Cow position:chr28:4016734-4016369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:248
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):96, 8

               
               
               Conread position:224-632
               
               
               Cow position:chr28:29416513-29416921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:276
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):163, 75

               
               
               Conread position:225-632
               
               
               Cow position:chr28:13474510-13474101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:278
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):57, 187

               
               
               Conread position:228-389
               
               
               Cow position:chr28:6301293-6301122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):8, 123

               
               
               Conread position:228-406
               
               
               Cow position:chr28:118823-118633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):8, 124

               
               
               Conread position:228-420
               
               
               Cow position:chr28:117549-117755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):8, 124

               
               
               Conread position:228-420
               
               
               Cow position:chr28:20046751-20046563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):8, 76

               
               
               Conread position:228-420
               
               
               Cow position:chr28:21207168-21207358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):10, 84

               
               
               Conread position:228-443
               
               
               Cow position:chr28:20174046-20173827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):100, 184

               
               
               Conread position:228-559
               
               
               Cow position:chr28:10495091-10495408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):8, 28

               
               
               Conread position:228-562
               
               
               Cow position:chr28:3449518-3449165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:248
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):8, 236

               
               
               Conread position:228-625
               
               
               Cow position:chr28:4809978-4809596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:264
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):92, 37

               
               
               Conread position:228-631
               
               
               Cow position:chr28:662308-661915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:278
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):116, 93

               
               
               Conread position:228-631
               
               
               Cow position:chr28:3143674-3144095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 116

               
               
               Conread position:228-631
               
               
               Cow position:chr28:15272061-15272464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:275
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):8, 134

               
               
               Conread position:228-631
               
               
               Cow position:chr28:22133117-22132723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:274
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):9, 118

               
               
               Conread position:228-632
               
               
               Cow position:chr28:10053124-10053543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 35

               
               
               Conread position:228-632
               
               
               Cow position:chr28:22371467-22371883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:266
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):85, 35

               
               
               Conread position:228-632
               
               
               Cow position:chr28:28765695-28766114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:284
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):93, 41

               
               
               Conread position:232-400
               
               
               Cow position:chr28:21744916-21744745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):77, 110

               
               
               Conread position:232-402
               
               
               Cow position:chr28:5609714-5609889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):89, 114

               
               
               Conread position:232-403
               
               
               Cow position:chr28:20281952-20281785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):77, 25

               
               
               Conread position:232-404
               
               
               Cow position:chr28:18761804-18761977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):111, 57

               
               
               Conread position:232-405
               
               
               Cow position:chr28:24996414-24996588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):42, 68

               
               
               Conread position:232-417
               
               
               Cow position:chr28:17680829-17680635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):89, 118

               
               
               Conread position:232-419
               
               
               Cow position:chr28:5630303-5630109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):93, 118

               
               
               Conread position:232-419
               
               
               Cow position:chr28:15362782-15362590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):77, 114

               
               
               Conread position:232-420
               
               
               Cow position:chr28:3726004-3726197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):38, 116

               
               
               Conread position:232-420
               
               
               Cow position:chr28:10959003-10958814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):81, 112

               
               
               Conread position:232-438
               
               
               Cow position:chr28:6322022-6321813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):60, 7

               
               
               Conread position:232-560
               
               
               Cow position:chr28:7008777-7009107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):89, 178

               
               
               Conread position:232-579
               
               
               Cow position:chr28:30746534-30746879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):182, 47

               
               
               Conread position:232-590
               
               
               Cow position:chr28:21046385-21046730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):182, 101

               
               
               Conread position:232-602
               
               
               Cow position:chr28:4643566-4643939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:266
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):94, 61

               
               
               Conread position:232-617
               
               
               Cow position:chr28:23724265-23724645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:262
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):111, 74

               
               
               Conread position:232-627
               
               
               Cow position:chr28:5236391-5236802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 133

               
               
               Conread position:232-630
               
               
               Cow position:chr28:30326897-30327284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:254
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):213, 82

               
               
               Conread position:232-631
               
               
               Cow position:chr28:10615746-10616155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:290
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):89, 31

               
               
               Conread position:232-631
               
               
               Cow position:chr28:11422615-11423008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:275
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):89, 32

               
               
               Conread position:232-631
               
               
               Cow position:chr28:25727572-25727174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:276
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):69, 32

               
               
               Conread position:232-632
               
               
               Cow position:chr28:1838200-1837786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:287
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):79, 127

               
               
               Conread position:232-632
               
               
               Cow position:chr28:5436882-5437296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:278
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):122, 90

               
               
               Conread position:232-632
               
               
               Cow position:chr28:5684904-5684505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:265
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):81, 107

               
               
               Conread position:232-632
               
               
               Cow position:chr28:8347938-8347530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 127

               
               
               Conread position:232-632
               
               
               Cow position:chr28:8787743-8787342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:275
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):86, 111

               
               
               Conread position:232-632
               
               
               Cow position:chr28:12598540-12598141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:283
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):81, 123

               
               
               Conread position:232-632
               
               
               Cow position:chr28:16369885-16370279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:264
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):63, 104

               
               
               Conread position:232-632
               
               
               Cow position:chr28:18934639-18934251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:256
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):190, 67

               
               
               Conread position:232-632
               
               
               Cow position:chr28:21845155-21844751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:272
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):73, 31

               
               
               Conread position:232-632
               
               
               Cow position:chr28:26340538-26340132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:278
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):92, 128

               
               
               Conread position:232-632
               
               
               Cow position:chr28:26719534-26719155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):266, 66

               
               
               Conread position:232-632
               
               
               Cow position:chr28:27218529-27218116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 127

               
               
               Conread position:232-633
               
               
               Cow position:chr28:5074317-5074710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:267
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):166, 96

               
               
               Conread position:232-645
               
               
               Cow position:chr28:11527055-11527473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:278
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):67, 120

               
               
               Conread position:232-645
               
               
               Cow position:chr28:16204126-16204550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:278
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):75, 185

               
               
               Conread position:233-389
               
               
               Cow position:chr28:26867951-26868110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):66, 107

               
               
               Conread position:233-412
               
               
               Cow position:chr28:9109414-9109235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):74, 104

               
               
               Conread position:233-449
               
               
               Cow position:chr28:4186106-4185884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):88, 80

               
               
               Conread position:233-631
               
               
               Cow position:chr28:14998265-14997858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:270
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):89, 7

               
               
               Conread position:233-631
               
               
               Cow position:chr28:23793117-23793506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 31

               
               
               Conread position:233-632
               
               
               Cow position:chr28:3746400-3745997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:263
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):78, 175

               
               
               Conread position:233-632
               
               
               Cow position:chr28:23007539-23007930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:266
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):172, 74

               
               
               Conread position:234-631
               
               
               Cow position:chr28:3078494-3078881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 49

               
               
               Conread position:234-632
               
               
               Cow position:chr28:9285175-9285582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:281
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):65, 71

               
               
               Conread position:234-632
               
               
               Cow position:chr28:33163274-33163672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:255
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):175, 70

               
               
               Conread position:234-645
               
               
               Cow position:chr28:3023714-3024129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 81

               
               
               Conread position:235-415
               
               
               Cow position:chr28:5674073-5673888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):73, 109

               
               
               Conread position:235-631
               
               
               Cow position:chr28:9100129-9099732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 20

               
               
               Conread position:235-633
               
               
               Cow position:chr28:12951617-12951227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 119

               
               
               Conread position:236-389
               
               
               Cow position:chr28:26960713-26960868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:236-420
               
               
               Cow position:chr28:8259832-8259638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):83, 124

               
               
               Conread position:236-420
               
               
               Cow position:chr28:19217012-19216832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):63, 56

               
               
               Conread position:236-538
               
               
               Cow position:chr28:19564035-19564338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:209
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):167, 76

               
               
               Conread position:236-604
               
               
               Cow position:chr28:20409591-20409216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:241
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):65, 147

               
               
               Conread position:236-632
               
               
               Cow position:chr28:6059271-6059677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:272
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):31, 45

               
               
               Conread position:236-632
               
               
               Cow position:chr28:23410134-23410528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:279
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):98, 61

               
               
               Conread position:237-631
               
               
               Cow position:chr28:7267750-7268139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:260
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):84, 161

               
               
               Conread position:238-437
               
               
               Cow position:chr28:27721894-27721692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):105, 196

               
               
               Conread position:238-627
               
               
               Cow position:chr28:22323457-22323066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:271
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):79, 117

               
               
               Conread position:240-632
               
               
               Cow position:chr28:14508191-14508570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:253
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):133, 59

               
               
               Conread position:241-406
               
               
               Cow position:chr28:13160348-13160522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):73, 119

               
               
               Conread position:242-580
               
               
               Cow position:chr28:13527392-13527051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):77, 21

               
               
               Conread position:242-629
               
               
               Cow position:chr28:24343547-24343165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:262
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):246, 57

               
               
               Conread position:246-435
               
               
               Cow position:chr28:11451315-11451497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):176, 60

               
               
               Conread position:246-438
               
               
               Cow position:chr28:20397176-20397382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):22, 104

               
               
               Conread position:246-619
               
               
               Cow position:chr28:21363930-21363559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 17

               
               
               Conread position:246-631
               
               
               Cow position:chr28:3914895-3914506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 55

               
               
               Conread position:246-631
               
               
               Cow position:chr28:30608007-30608385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:243
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):160, 21

               
               
               Conread position:246-632
               
               
               Cow position:chr28:25400057-25399685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:254
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):25, 101

               
               
               Conread position:246-632
               
               
               Cow position:chr28:26743821-26743417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 107

               
               
               Conread position:247-538
               
               
               Cow position:chr28:18369824-18370118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):52, 103

               
               
               Conread position:248-632
               
               
               Cow position:chr28:16346350-16346731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:256
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):67, 10

               
               
               Conread position:248-633
               
               
               Cow position:chr28:12430795-12430404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:270
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):80, 155

               
               
               Conread position:249-418
               
               
               Cow position:chr28:26530680-26530856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):66, 97

               
               
               Conread position:251-632
               
               
               Cow position:chr28:4913907-4914306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:254
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):90, 70

               
               
               Conread position:251-632
               
               
               Cow position:chr28:7512396-7512796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:260
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):76, 108

               
               
               Conread position:252-632
               
               
               Cow position:chr28:10745399-10745005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:266
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):69, 105

               
               
               Conread position:255-626
               
               
               Cow position:chr28:4138486-4138868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:265
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):64, 97

               
               
               Conread position:255-630
               
               
               Cow position:chr28:30303027-30303398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:252
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):271, 59

               
               
               Conread position:259-632
               
               
               Cow position:chr28:18625414-18625018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:260
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):67, 100

               
               
               Conread position:260-632
               
               
               Cow position:chr28:16085490-16085120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 19

               
               
               Conread position:262-632
               
               
               Cow position:chr28:26103872-26103511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:247
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):58, 76

               
               
               Conread position:267-632
               
               
               Cow position:chr28:3408053-3408422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:262
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):48, 72

               
               
               Conread position:271-633
               
               
               Cow position:chr28:31649237-31648868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:257
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):48, 67

               
               
               Conread position:276-631
               
               
               Cow position:chr28:16386359-16386709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:257
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):45, 71

               
               
               Conread position:281-645
               
               
               Cow position:chr28:25596778-25596415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:239
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):34, 56

               
               
               Conread position:298-629
               
               
               Cow position:chr28:2899120-2898794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):116, 43

               
               
               Conread position:299-593
               
               
               Cow position:chr28:2752364-2752662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):106, 42

               
               
               Conread position:299-631
               
               
               Cow position:chr28:19025873-19026206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:233
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):14, 33

               
               
               Conread position:299-632
               
               
               Cow position:chr28:22321550-22321217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:237
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):25, 51

               
               
               Conread position:300-632
               
               
               Cow position:chr28:5771501-5771165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):24, 57

               
               
               Conread position:303-632
               
               
               Cow position:chr28:33052168-33051816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:239
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:304-631
               
               
               Cow position:chr28:7548932-7549266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):104, 148

               
               
               Conread position:304-636
               
               
               Cow position:chr28:15043735-15044066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:223
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):16, 171

               
               
               Conread position:309-632
               
               
               Cow position:chr28:4841272-4841601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:239
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):75, 24

               
               
               Conread position:310-633
               
               
               Cow position:chr28:18591389-18591064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:209
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):94, 10

               
               
               Conread position:314-631
               
               
               Cow position:chr28:21380996-21380671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:233
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):36, 25

               
               
               Conread position:314-632
               
               
               Cow position:chr28:13176574-13176883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):273, 29

               
               
               Conread position:316-631
               
               
               Cow position:chr28:7228277-7228589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):97, 14

               
               
               Conread position:316-658
               
               
               Cow position:chr28:21598137-21598484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):21, 147

               
               
               Conread position:321-628
               
               
               Cow position:chr28:22346129-22345818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):101, 30

               
               
               Conread position:321-629
               
               
               Cow position:chr28:11752030-11752346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:213
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):12, 21

               
               
               Conread position:321-631
               
               
               Cow position:chr28:16110046-16109741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):9, 29

               
               
               Conread position:321-632
               
               
               Cow position:chr28:23676246-23675939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):93, 20

               
               
               Conread position:322-645
               
               
               Cow position:chr28:10529383-10529700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:228
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):83, 22

               
               
               Conread position:323-539
               
               
               Cow position:chr28:5166873-5166655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):85, 26

               
               
               Conread position:323-631
               
               
               Cow position:chr28:5128622-5128933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):34, 12

               
               
               Conread position:323-632
               
               
               Cow position:chr28:11817858-11818165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):18, 29

               
               
               Conread position:323-632
               
               
               Cow position:chr28:21355337-21355020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 26

               
               
               Conread position:323-632
               
               
               Cow position:chr28:31109898-31110210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:230
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):91, 25

               
               
               Conread position:323-645
               
               
               Cow position:chr28:19079739-19080065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:226
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):85, 26

               
               
               Conread position:323-650
               
               
               Cow position:chr28:29434322-29434647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:219
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):85, 20

               
               
               Conread position:324-627
               
               
               Cow position:chr28:14934063-14933762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):176, 17

               
               
               Conread position:324-632
               
               
               Cow position:chr28:11786612-11786913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:226
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):80, 17

               
               
               Conread position:324-632
               
               
               Cow position:chr28:26922263-26922569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):82, 17

               
               
               Conread position:325-623
               
               
               Cow position:chr28:7415906-7416204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:201
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):70, 28

               
               
               Conread position:325-628
               
               
               Cow position:chr28:14512637-14512325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:212
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):89, 16

               
               
               Conread position:325-630
               
               
               Cow position:chr28:7684600-7684881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):218, 16

               
               
               Conread position:327-631
               
               
               Cow position:chr28:7723288-7723599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:210
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):57, 14

               
               
               Conread position:333-633
               
               
               Cow position:chr28:26685212-26684907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:214
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):72, 8

               
               
               Conread position:340-632
               
               
               Cow position:chr28:8408824-8408535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:215
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):60, 107

               
               
               Conread position:340-632
               
               
               Cow position:chr28:23621627-23621343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):158, 27

               
               
               Conread position:351-588
               
               
               Cow position:chr28:25806652-25806411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):49, 111

               
               
               Conread position:351-632
               
               
               Cow position:chr28:2862947-2862657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):63, 56

               
               
               Conread position:351-632
               
               
               Cow position:chr28:12947028-12946733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:194
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):54, 111

               
               
               Conread position:351-632
               
               
               Cow position:chr28:16687105-16686828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):57, 17

               
               
               Conread position:351-632
               
               
               Cow position:chr28:26533622-26533338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):63, 56

               
               
               Conread position:351-632
               
               
               Cow position:chr28:31987693-31987399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):52, 113

               
               
               Conread position:351-633
               
               
               Cow position:chr28:18354254-18354524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):153, 36

               
               
               Conread position:360-629
               
               
               Cow position:chr28:4058052-4057785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):54, 47

               
               
               Conread position:360-632
               
               
               Cow position:chr28:22485323-22485043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):48, 100

               
               
               Conread position:361-613
               
               
               Cow position:chr28:17235667-17235914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):57, 73

               
               
               Conread position:361-619
               
               
               Cow position:chr28:10999600-10999860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):42, 148

               
               
               Conread position:362-632
               
               
               Cow position:chr28:12619644-12619358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):5, 83

               
               
               Conread position:367-632
               
               
               Cow position:chr28:4588160-4587892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):28, 47

               
               
               Conread position:368-632
               
               
               Cow position:chr28:10533873-10534135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):54, 73

               
               
               Conread position:383-632
               
               
               Cow position:chr28:18791060-18790806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):33, 12

               
               
               Conread position:384-632
               
               
               Cow position:chr28:5904775-5904531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):10, 30

               
               
               Conread position:394-632
               
               
               Cow position:chr28:17316901-17316654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):14, 68

               
               
               Conread position:399-645
               
               
               Cow position:chr28:26269360-26269114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):15, 49

               
               
               Conread position:411-615
               
               
               Cow position:chr28:118035-118243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):86, 47

               
               
               Conread position:411-629
               
               
               Cow position:chr28:16252841-16253059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:169
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):87, 161

               
               
               Conread position:411-632
               
               
               Cow position:chr28:4880249-4880468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):25, 54

               
               
               Conread position:411-632
               
               
               Cow position:chr28:9390348-9390569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):106, 42

               
               
               Conread position:412-613
               
               
               Cow position:chr28:19024159-19023947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:412-632
               
               
               Cow position:chr28:6307906-6307687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):94, 40

               
               
               Conread position:412-632
               
               
               Cow position:chr28:15374809-15375030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):88, 46

               
               
               Conread position:412-632
               
               
               Cow position:chr28:22170695-22170922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):29, 47

               
               
               Conread position:414-635
               
               
               Cow position:chr28:22739804-22739593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):84, 40

               
               
               Conread position:420-631
               
               
               Cow position:chr28:5658558-5658350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):80, 43

               
               
               Conread position:431-631
               
               
               Cow position:chr28:8656743-8656940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):70, 27

               
               
               Conread position:444-631
               
               
               Cow position:chr28:17029734-17029919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:451-632
               
               
               Cow position:chr28:26784486-26784671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:453-631
               
               
               Cow position:chr28:2279689-2279868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):45, 58

               
               
               Conread position:455-627
               
               
               Cow position:chr28:13241852-13242023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):13, 104

               
               
               Conread position:458-632
               
               
               Cow position:chr28:2124400-2124226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):40, 101

               
               
               Conread position:463-645
               
               
               Cow position:chr28:5773603-5773422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):31, 16

               
               
               Conread position:467-632
               
               
               Cow position:chr28:18717160-18717327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:467-632
               
               
               Cow position:chr28:34082054-34082226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):33, 94

               
               
               Conread position:470-630
               
               
               Cow position:chr28:24996629-24996791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):26, 62

               
               
               Conread position:470-632
               
               
               Cow position:chr28:7590221-7590386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:470-632
               
               
               Cow position:chr28:10478383-10478547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):35, 109

               
               
               Conread position:470-632
               
               
               Cow position:chr28:17738114-17738283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:471-631
               
               
               Cow position:chr28:3077948-3077789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):27, 95

               
               
               Conread position:475-632
               
               
               Cow position:chr28:12048748-12048904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):14, 69

               
               
               Conread position:476-632
               
               
               Cow position:chr28:11827442-11827289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):67, 9

               
               
               Conread position:478-645
               
               
               Cow position:chr28:11451511-11451684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:481-632
               
               
               Cow position:chr28:19222647-19222802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:489-633
               
               
               Cow position:chr28:2888370-2888224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):53, 113

               
               
               Conread position:493-617
               
               
               Cow position:chr28:22279262-22279382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):50, 16

               
               
               Conread position:493-631
               
               
               Cow position:chr28:7980480-7980622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):44, 52

               
               
               Conread position:495-628
               
               
               Cow position:chr28:5188471-5188602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):43, 72

               
               
               Conread position:495-631
               
               
               Cow position:chr28:8348717-8348856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):91, 75

               
               
               Conread position:495-631
               
               
               Cow position:chr28:14234906-14234769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr28:2737875-2738016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:107
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr28:3256730-3256589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr28:4188462-4188330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr28:14649281-14649144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr28:16441316-16441183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):48, 93

               
               
               Conread position:495-632
               
               
               Cow position:chr28:20759987-20760128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr28:23775979-23775841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):92, 12

               
               
               Conread position:495-632
               
               
               Cow position:chr28:25424367-25424507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):90, 54

               
               
               Conread position:496-627
               
               
               Cow position:chr28:3161138-3161268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:497-645
               
               
               Cow position:chr28:32813063-32813216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):30, 132

               
               
               Conread position:498-632
               
               
               Cow position:chr28:29199656-29199522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):94, 66

               
               
               Conread position:503-632
               
               
               Cow position:chr28:3751242-3751114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:505-631
               
               
               Cow position:chr28:7751374-7751504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:505-632
               
               
               Cow position:chr28:8372397-8372266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:103
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:505-632
               
               
               Cow position:chr28:24646467-24646336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:103
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:508-632
               
               
               Cow position:chr28:2905500-2905376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:509-621
               
               
               Cow position:chr28:16879354-16879465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):21, 73

               
               
               Conread position:509-645
               
               
               Cow position:chr28:3480191-3480052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:511-645
               
               
               Cow position:chr28:8628861-8628994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:102
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:521-632
               
               
               Cow position:chr28:5366221-5366335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:98
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:183-579
               
               
               Cow position:chr29:12025232-12025629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:278
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):124, 80

               
               
               Conread position:199-632
               
               
               Cow position:chr29:24624472-24624036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:301
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):22, 34

               
               
               Conread position:201-563
               
               
               Cow position:chr29:36220773-36220385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:267
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):35, 166

               
               
               Conread position:202-314
               
               
               Cow position:chr29:23574536-23574424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:90
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:202-632
               
               
               Cow position:chr29:7955761-7956195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 35

               
               
               Conread position:204-412
               
               
               Cow position:chr29:32215929-32215716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):117, 28

               
               
               Conread position:206-621
               
               
               Cow position:chr29:22613646-22613227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:269
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):16, 60

               
               
               Conread position:206-632
               
               
               Cow position:chr29:3711601-3711175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:297
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):30, 112

               
               
               Conread position:207-623
               
               
               Cow position:chr29:26259691-26259273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:278
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):118, 21

               
               
               Conread position:208-325
               
               
               Cow position:chr29:4741169-4741284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:209-632
               
               
               Cow position:chr29:34744406-34744828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 61

               
               
               Conread position:210-620
               
               
               Cow position:chr29:25092325-25091910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:274
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):26, 132

               
               
               Conread position:210-632
               
               
               Cow position:chr29:16657914-16657474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 136

               
               
               Conread position:211-405
               
               
               Cow position:chr29:3538468-3538658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:211-632
               
               
               Cow position:chr29:706754-707156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:279
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):13, 52

               
               
               Conread position:211-632
               
               
               Cow position:chr29:32963743-32963343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:284
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):12, 23

               
               
               Conread position:212-326
               
               
               Cow position:chr29:9924355-9924469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:90
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:212-436
               
               
               Cow position:chr29:20167641-20167407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):107, 57

               
               
               Conread position:212-447
               
               
               Cow position:chr29:24187846-24188093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):105, 18

               
               
               Conread position:212-605
               
               
               Cow position:chr29:29475034-29475440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:272
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):24, 211

               
               
               Conread position:212-621
               
               
               Cow position:chr29:29057397-29056980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 140

               
               
               Conread position:213-418
               
               
               Cow position:chr29:17436963-17436756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):141, 19

               
               
               Conread position:213-632
               
               
               Cow position:chr29:4624775-4625204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:291
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):8, 35

               
               
               Conread position:214-568
               
               
               Cow position:chr29:35084005-35084370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:250
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):15, 59

               
               
               Conread position:214-605
               
               
               Cow position:chr29:17462565-17462969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:284
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):54, 17

               
               
               Conread position:214-624
               
               
               Cow position:chr29:24035194-24035619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:276
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):92, 33

               
               
               Conread position:215-419
               
               
               Cow position:chr29:26211269-26211056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):21, 135

               
               
               Conread position:215-425
               
               
               Cow position:chr29:35189825-35189605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):21, 144

               
               
               Conread position:215-554
               
               
               Cow position:chr29:28734833-28735178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):91, 13

               
               
               Conread position:215-645
               
               
               Cow position:chr29:11916035-11915592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:297
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):59, 15

               
               
               Conread position:215-645
               
               
               Cow position:chr29:36531084-36530639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:294
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):14, 201

               
               
               Conread position:216-326
               
               
               Cow position:chr29:20644131-20644022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:89
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:216-403
               
               
               Cow position:chr29:14746996-14746800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):15, 134

               
               
               Conread position:216-405
               
               
               Cow position:chr29:4647998-4648191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):103, 49

               
               
               Conread position:216-414
               
               
               Cow position:chr29:28420968-28420763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):105, 12

               
               
               Conread position:216-421
               
               
               Cow position:chr29:14577071-14576861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):103, 136

               
               
               Conread position:216-452
               
               
               Cow position:chr29:44684313-44684071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):23, 141

               
               
               Conread position:216-530
               
               
               Cow position:chr29:5046865-5046543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:225
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):111, 16

               
               
               Conread position:216-603
               
               
               Cow position:chr29:8669571-8669184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:253
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):20, 139

               
               
               Conread position:216-630
               
               
               Cow position:chr29:31929200-31928769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 77

               
               
               Conread position:216-632
               
               
               Cow position:chr29:3704003-3704415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:277
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):15, 87

               
               
               Conread position:216-632
               
               
               Cow position:chr29:12680371-12679943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 16

               
               
               Conread position:216-632
               
               
               Cow position:chr29:17110166-17109760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:282
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):105, 16

               
               
               Conread position:216-632
               
               
               Cow position:chr29:20626784-20626365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:286
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):59, 145

               
               
               Conread position:216-632
               
               
               Cow position:chr29:21196441-21196862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 15

               
               
               Conread position:216-632
               
               
               Cow position:chr29:21932903-21933324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:295
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):12, 73

               
               
               Conread position:216-632
               
               
               Cow position:chr29:22162051-22162462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 16

               
               
               Conread position:216-632
               
               
               Cow position:chr29:23874678-23874248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 137

               
               
               Conread position:216-632
               
               
               Cow position:chr29:35292302-35291888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 136

               
               
               Conread position:217-326
               
               
               Cow position:chr29:26817792-26817682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:90
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:217-405
               
               
               Cow position:chr29:22028748-22028936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):90, 104

               
               
               Conread position:217-414
               
               
               Cow position:chr29:32655880-32656085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):19, 137

               
               
               Conread position:217-450
               
               
               Cow position:chr29:22735238-22735471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):99, 14

               
               
               Conread position:217-458
               
               
               Cow position:chr29:396613-396376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):96, 12

               
               
               Conread position:217-507
               
               
               Cow position:chr29:23812834-23813122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):17, 47

               
               
               Conread position:217-539
               
               
               Cow position:chr29:30227066-30227391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:228
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):20, 143

               
               
               Conread position:217-628
               
               
               Cow position:chr29:34297355-34297772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:285
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):15, 140

               
               
               Conread position:217-631
               
               
               Cow position:chr29:35501452-35501859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 70

               
               
               Conread position:217-632
               
               
               Cow position:chr29:15738133-15738556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:268
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):14, 75

               
               
               Conread position:217-632
               
               
               Cow position:chr29:22068528-22068958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 140

               
               
               Conread position:217-632
               
               
               Cow position:chr29:32799489-32799914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:300
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):14, 217

               
               
               Conread position:217-632
               
               
               Cow position:chr29:35677325-35677756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:297
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):13, 137

               
               
               Conread position:217-632
               
               
               Cow position:chr29:40117779-40117357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:280
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):17, 127

               
               
               Conread position:217-633
               
               
               Cow position:chr29:24293083-24292664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 64

               
               
               Conread position:217-635
               
               
               Cow position:chr29:6337862-6337448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 15

               
               
               Conread position:218-393
               
               
               Cow position:chr29:11489385-11489553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:218-402
               
               
               Cow position:chr29:11894909-11894719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):103, 10

               
               
               Conread position:218-406
               
               
               Cow position:chr29:20685381-20685186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:218-423
               
               
               Cow position:chr29:30216903-30217112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:149
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):96, 85

               
               
               Conread position:218-434
               
               
               Cow position:chr29:4440994-4441215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):101, 12

               
               
               Conread position:218-449
               
               
               Cow position:chr29:4070834-4070598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:218-487
               
               
               Cow position:chr29:18449925-18450199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):12, 129

               
               
               Conread position:218-582
               
               
               Cow position:chr29:5408930-5409308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:260
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):89, 138

               
               
               Conread position:218-632
               
               
               Cow position:chr29:16309933-16309539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:283
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):198, 48

               
               
               Conread position:218-632
               
               
               Cow position:chr29:19949517-19949098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:282
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):102, 272

               
               
               Conread position:218-632
               
               
               Cow position:chr29:20673592-20674016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:285
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):16, 147

               
               
               Conread position:218-632
               
               
               Cow position:chr29:27816548-27816158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:273
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):204, 73

               
               
               Conread position:218-632
               
               
               Cow position:chr29:31926107-31926501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:280
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):190, 19

               
               
               Conread position:218-632
               
               
               Cow position:chr29:34773536-34773939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:263
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):25, 80

               
               
               Conread position:218-632
               
               
               Cow position:chr29:35405578-35406005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:279
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):110, 159

               
               
               Conread position:218-645
               
               
               Cow position:chr29:9709905-9709474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:292
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):94, 81

               
               
               Conread position:218-645
               
               
               Cow position:chr29:14501811-14501366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:296
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):10, 232

               
               
               Conread position:219-410
               
               
               Cow position:chr29:17804741-17804549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):88, 152

               
               
               Conread position:219-410
               
               
               Cow position:chr29:31982037-31981845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):15, 97

               
               
               Conread position:219-418
               
               
               Cow position:chr29:12222379-12222182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):134, 99

               
               
               Conread position:219-418
               
               
               Cow position:chr29:35259193-35258990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):18, 48

               
               
               Conread position:219-626
               
               
               Cow position:chr29:22690435-22690014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:294
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):109, 9

               
               
               Conread position:219-629
               
               
               Cow position:chr29:23698181-23697770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 42

               
               
               Conread position:219-631
               
               
               Cow position:chr29:31489534-31489109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 13

               
               
               Conread position:219-632
               
               
               Cow position:chr29:17222627-17222197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 65

               
               
               Conread position:219-632
               
               
               Cow position:chr29:26615530-26615936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:282
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):99, 56

               
               
               Conread position:220-386
               
               
               Cow position:chr29:24605106-24604933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):96, 137

               
               
               Conread position:220-395
               
               
               Cow position:chr29:22018976-22019159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):27, 138

               
               
               Conread position:220-451
               
               
               Cow position:chr29:28813762-28814004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):99, 140

               
               
               Conread position:221-624
               
               
               Cow position:chr29:3583907-3584328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:282
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):95, 138

               
               
               Conread position:221-626
               
               
               Cow position:chr29:29769146-29769551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 10

               
               
               Conread position:221-632
               
               
               Cow position:chr29:41531062-41530638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 223

               
               
               Conread position:222-409
               
               
               Cow position:chr29:4484305-4484112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):83, 137

               
               
               Conread position:222-633
               
               
               Cow position:chr29:1306657-1307077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:265
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):90, 9

               
               
               Conread position:224-423
               
               
               Cow position:chr29:43088512-43088307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):79, 122

               
               
               Conread position:224-590
               
               
               Cow position:chr29:17297344-17296963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:267
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):103, 137

               
               
               Conread position:227-645
               
               
               Cow position:chr29:2644118-2644532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:255
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):221, 72

               
               
               Conread position:228-403
               
               
               Cow position:chr29:16290926-16290746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):8, 59

               
               
               Conread position:228-414
               
               
               Cow position:chr29:38754735-38754932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):8, 120

               
               
               Conread position:228-449
               
               
               Cow position:chr29:42630320-42630091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):8, 65

               
               
               Conread position:228-540
               
               
               Cow position:chr29:3826169-3825854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):8, 37

               
               
               Conread position:228-593
               
               
               Cow position:chr29:28587647-28587285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):8, 123

               
               
               Conread position:228-631
               
               
               Cow position:chr29:3502765-3502346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:269
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):8, 98

               
               
               Conread position:228-631
               
               
               Cow position:chr29:6636280-6635894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:278
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):49, 36

               
               
               Conread position:228-632
               
               
               Cow position:chr29:25475135-25474696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:293
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):71, 139

               
               
               Conread position:228-632
               
               
               Cow position:chr29:28196816-28197219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:269
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):11, 37

               
               
               Conread position:228-645
               
               
               Cow position:chr29:1933367-1933781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:295
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):8, 50

               
               
               Conread position:229-608
               
               
               Cow position:chr29:14838606-14838998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:262
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):78, 123

               
               
               Conread position:229-630
               
               
               Cow position:chr29:40891506-40891911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:271
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):125, 34

               
               
               Conread position:230-632
               
               
               Cow position:chr29:37960797-37961189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:271
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):184, 57

               
               
               Conread position:230-632
               
               
               Cow position:chr29:44378206-44378630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:280
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):8, 168

               
               
               Conread position:231-632
               
               
               Cow position:chr29:28195334-28195728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):265, 75

               
               
               Conread position:232-428
               
               
               Cow position:chr29:36781112-36781313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):75, 91

               
               
               Conread position:232-438
               
               
               Cow position:chr29:38858014-38858232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):78, 50

               
               
               Conread position:232-449
               
               
               Cow position:chr29:36952114-36952326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):182, 74

               
               
               Conread position:232-554
               
               
               Cow position:chr29:3685323-3685644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):109, 74

               
               
               Conread position:232-574
               
               
               Cow position:chr29:29552045-29551700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):66, 53

               
               
               Conread position:232-580
               
               
               Cow position:chr29:31674829-31674471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):86, 125

               
               
               Conread position:232-582
               
               
               Cow position:chr29:2056258-2055899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):31, 113

               
               
               Conread position:232-603
               
               
               Cow position:chr29:37618506-37618123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 127

               
               
               Conread position:232-617
               
               
               Cow position:chr29:28979318-28979676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):304, 29

               
               
               Conread position:232-620
               
               
               Cow position:chr29:10818261-10818636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:253
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):12, 65

               
               
               Conread position:232-621
               
               
               Cow position:chr29:11434310-11433922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 39

               
               
               Conread position:232-628
               
               
               Cow position:chr29:16609948-16609531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 119

               
               
               Conread position:232-628
               
               
               Cow position:chr29:22777983-22778389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 31

               
               
               Conread position:232-629
               
               
               Cow position:chr29:708952-709331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:268
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):244, 58

               
               
               Conread position:232-629
               
               
               Cow position:chr29:18878284-18878709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 31

               
               
               Conread position:232-629
               
               
               Cow position:chr29:25737221-25737624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:269
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):64, 31

               
               
               Conread position:232-630
               
               
               Cow position:chr29:27009624-27009209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:271
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):24, 252

               
               
               Conread position:232-632
               
               
               Cow position:chr29:699430-699827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:266
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):173, 115

               
               
               Conread position:232-632
               
               
               Cow position:chr29:732808-732406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:273
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):89, 47

               
               
               Conread position:232-632
               
               
               Cow position:chr29:1325644-1325226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:274
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):52, 233

               
               
               Conread position:232-632
               
               
               Cow position:chr29:4121054-4120634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 127

               
               
               Conread position:232-632
               
               
               Cow position:chr29:19428848-19428452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:279
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):61, 15

               
               
               Conread position:232-632
               
               
               Cow position:chr29:19756635-19756237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:271
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):68, 31

               
               
               Conread position:232-632
               
               
               Cow position:chr29:19762461-19762061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:276
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):89, 45

               
               
               Conread position:232-632
               
               
               Cow position:chr29:27858986-27858580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:263
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):36, 170

               
               
               Conread position:232-632
               
               
               Cow position:chr29:35281670-35281289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:282
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):125, 77

               
               
               Conread position:232-632
               
               
               Cow position:chr29:38581190-38580764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:287
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):63, 175

               
               
               Conread position:233-438
               
               
               Cow position:chr29:33321546-33321332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):74, 115

               
               
               Conread position:233-631
               
               
               Cow position:chr29:37599045-37599415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:271
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):310, 31

               
               
               Conread position:234-387
               
               
               Cow position:chr29:23678897-23678745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:234-397
               
               
               Cow position:chr29:42405145-42404973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):85, 116

               
               
               Conread position:234-632
               
               
               Cow position:chr29:28775265-28775666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:270
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):29, 23

               
               
               Conread position:234-632
               
               
               Cow position:chr29:34745465-34745866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:281
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):22, 33

               
               
               Conread position:235-405
               
               
               Cow position:chr29:3293138-3292966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):74, 104

               
               
               Conread position:235-628
               
               
               Cow position:chr29:10153617-10153997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:258
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):193, 67

               
               
               Conread position:235-632
               
               
               Cow position:chr29:2744074-2744483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:272
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):92, 243

               
               
               Conread position:236-404
               
               
               Cow position:chr29:37293221-37293058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:236-405
               
               
               Cow position:chr29:26539425-26539253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):79, 117

               
               
               Conread position:236-631
               
               
               Cow position:chr29:10653516-10653137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:266
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):330, 73

               
               
               Conread position:236-632
               
               
               Cow position:chr29:40583979-40583586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:268
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):85, 27

               
               
               Conread position:237-417
               
               
               Cow position:chr29:22534156-22533965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):82, 122

               
               
               Conread position:237-629
               
               
               Cow position:chr29:30441132-30440717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 236

               
               
               Conread position:237-632
               
               
               Cow position:chr29:18021509-18021886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:257
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):194, 67

               
               
               Conread position:237-632
               
               
               Cow position:chr29:26779069-26778673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:260
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):88, 116

               
               
               Conread position:239-632
               
               
               Cow position:chr29:1395763-1395394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:262
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):147, 30

               
               
               Conread position:241-483
               
               
               Cow position:chr29:4423261-4423500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):166, 58

               
               
               Conread position:242-420
               
               
               Cow position:chr29:16279165-16278991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):172, 72

               
               
               Conread position:242-632
               
               
               Cow position:chr29:21443153-21443555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:275
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):79, 22

               
               
               Conread position:242-632
               
               
               Cow position:chr29:24952875-24952473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 123

               
               
               Conread position:243-632
               
               
               Cow position:chr29:39111137-39111519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:270
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):171, 74

               
               
               Conread position:245-626
               
               
               Cow position:chr29:12783770-12784160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:274
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):75, 165

               
               
               Conread position:246-588
               
               
               Cow position:chr29:4085480-4085152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):297, 49

               
               
               Conread position:246-608
               
               
               Cow position:chr29:34359642-34359989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:252
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):59, 93

               
               
               Conread position:246-632
               
               
               Cow position:chr29:4479983-4480387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:267
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):22, 32

               
               
               Conread position:246-632
               
               
               Cow position:chr29:4520516-4520124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:246-635
               
               
               Cow position:chr29:26017316-26017728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:287
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):75, 117

               
               
               Conread position:246-645
               
               
               Cow position:chr29:26334205-26334614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:262
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):97, 222

               
               
               Conread position:246-645
               
               
               Cow position:chr29:45589418-45589809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:274
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):54, 20

               
               
               Conread position:249-611
               
               
               Cow position:chr29:44988623-44988972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:253
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):62, 80

               
               
               Conread position:249-624
               
               
               Cow position:chr29:17154943-17154572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:265
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):158, 57

               
               
               Conread position:250-632
               
               
               Cow position:chr29:16958-17316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:254
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):183, 49

               
               
               Conread position:250-632
               
               
               Cow position:chr29:38582150-38581756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:271
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):69, 111

               
               
               Conread position:251-632
               
               
               Cow position:chr29:18735470-18735854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:249
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):154, 96

               
               
               Conread position:251-632
               
               
               Cow position:chr29:19389659-19389275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:257
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):75, 110

               
               
               Conread position:253-633
               
               
               Cow position:chr29:356479-356114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:260
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):155, 46

               
               
               Conread position:261-620
               
               
               Cow position:chr29:3100096-3100461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:256
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):28, 100

               
               
               Conread position:261-633
               
               
               Cow position:chr29:86835-87234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:277
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):69, 160

               
               
               Conread position:268-645
               
               
               Cow position:chr29:29975201-29974817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:251
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):76, 197

               
               
               Conread position:276-631
               
               
               Cow position:chr29:109834-109499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:243
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):58, 66

               
               
               Conread position:282-632
               
               
               Cow position:chr29:7966393-7966035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:256
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):37, 74

               
               
               Conread position:286-646
               
               
               Cow position:chr29:1557073-1556704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:243
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):38, 73

               
               
               Conread position:298-585
               
               
               Cow position:chr29:24252361-24252074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:198
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):26, 47

               
               
               Conread position:298-631
               
               
               Cow position:chr29:28166098-28166428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):116, 22

               
               
               Conread position:298-632
               
               
               Cow position:chr29:6844502-6844841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:240
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):23, 49

               
               
               Conread position:300-631
               
               
               Cow position:chr29:19339123-19338769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:245
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):99, 20

               
               
               Conread position:301-621
               
               
               Cow position:chr29:749786-750107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):101, 40

               
               
               Conread position:301-626
               
               
               Cow position:chr29:22175804-22175485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):12, 42

               
               
               Conread position:302-632
               
               
               Cow position:chr29:6286035-6286369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:242
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):22, 45

               
               
               Conread position:309-632
               
               
               Cow position:chr29:45005516-45005830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):92, 11

               
               
               Conread position:314-611
               
               
               Cow position:chr29:5186385-5186689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):94, 21

               
               
               Conread position:314-646
               
               
               Cow position:chr29:11053752-11054081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:228
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):36, 27

               
               
               Conread position:316-632
               
               
               Cow position:chr29:20903184-20903499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):99, 25

               
               
               Conread position:317-631
               
               
               Cow position:chr29:16195943-16195642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):92, 12

               
               
               Conread position:317-632
               
               
               Cow position:chr29:17543546-17543239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):226, 51

               
               
               Conread position:319-632
               
               
               Cow position:chr29:36217216-36216906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):71, 135

               
               
               Conread position:320-631
               
               
               Cow position:chr29:9912278-9911967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:210
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):88, 21

               
               
               Conread position:320-632
               
               
               Cow position:chr29:17607519-17607205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):66, 28

               
               
               Conread position:320-632
               
               
               Cow position:chr29:40853031-40852721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:215
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):85, 127

               
               
               Conread position:320-645
               
               
               Cow position:chr29:6293377-6293692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:218
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):94, 21

               
               
               Conread position:321-645
               
               
               Cow position:chr29:1229708-1229384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):93, 26

               
               
               Conread position:323-580
               
               
               Cow position:chr29:26416450-26416201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):80, 18

               
               
               Conread position:323-610
               
               
               Cow position:chr29:11647193-11646914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):91, 18

               
               
               Conread position:323-631
               
               
               Cow position:chr29:25333362-25333664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:220
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):61, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr29:9638221-9638523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:223
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):145, 26

               
               
               Conread position:323-632
               
               
               Cow position:chr29:13372762-13372452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:209
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):91, 10

               
               
               Conread position:323-632
               
               
               Cow position:chr29:22936370-22936068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):90, 134

               
               
               Conread position:323-632
               
               
               Cow position:chr29:28868742-28868421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):65, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr29:40097061-40096745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:223
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):63, 26

               
               
               Conread position:323-632
               
               
               Cow position:chr29:40298921-40299224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:223
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):91, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr29:43496139-43495848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):11, 19

               
               
               Conread position:323-633
               
               
               Cow position:chr29:17409434-17409117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):80, 26

               
               
               Conread position:324-609
               
               
               Cow position:chr29:4334817-4334539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):221, 60

               
               
               Conread position:324-630
               
               
               Cow position:chr29:2984989-2984675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):91, 56

               
               
               Conread position:325-632
               
               
               Cow position:chr29:11705209-11704911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):100, 16

               
               
               Conread position:325-632
               
               
               Cow position:chr29:23983858-23984174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:212
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):97, 18

               
               
               Conread position:325-632
               
               
               Cow position:chr29:25088840-25088542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:212
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):80, 24

               
               
               Conread position:325-632
               
               
               Cow position:chr29:39567780-39567476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:216
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):97, 72

               
               
               Conread position:333-628
               
               
               Cow position:chr29:41365198-41364902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:217
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):72, 8

               
               
               Conread position:333-629
               
               
               Cow position:chr29:15940541-15940846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):81, 8

               
               
               Conread position:333-632
               
               
               Cow position:chr29:868864-868561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):74, 8

               
               
               Conread position:333-632
               
               
               Cow position:chr29:26263925-26263640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:203
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):73, 8

               
               
               Conread position:351-632
               
               
               Cow position:chr29:40166316-40166031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):57, 93

               
               
               Conread position:356-631
               
               
               Cow position:chr29:17668554-17668285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):229, 99

               
               
               Conread position:356-632
               
               
               Cow position:chr29:9139488-9139197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):53, 38

               
               
               Conread position:361-629
               
               
               Cow position:chr29:14615201-14615468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):62, 46

               
               
               Conread position:361-630
               
               
               Cow position:chr29:26771501-26771231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):40, 112

               
               
               Conread position:361-632
               
               
               Cow position:chr29:463592-463865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):47, 141

               
               
               Conread position:361-632
               
               
               Cow position:chr29:4367788-4367509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:366-632
               
               
               Cow position:chr29:2071514-2071780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):38, 90

               
               
               Conread position:366-632
               
               
               Cow position:chr29:18211941-18212194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):177, 41

               
               
               Conread position:371-632
               
               
               Cow position:chr29:41747500-41747229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):34, 93

               
               
               Conread position:373-633
               
               
               Cow position:chr29:26330249-26330001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:379-633
               
               
               Cow position:chr29:24119696-24119949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):35, 28

               
               
               Conread position:382-632
               
               
               Cow position:chr29:14484499-14484757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):40, 13

               
               
               Conread position:384-632
               
               
               Cow position:chr29:32521913-32521657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):24, 163

               
               
               Conread position:392-632
               
               
               Cow position:chr29:2533086-2532850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):15, 20

               
               
               Conread position:399-632
               
               
               Cow position:chr29:42886411-42886169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):8, 13

               
               
               Conread position:402-632
               
               
               Cow position:chr29:9685976-9686212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):30, 200

               
               
               Conread position:411-632
               
               
               Cow position:chr29:11696538-11696322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):60, 37

               
               
               Conread position:419-643
               
               
               Cow position:chr29:6015106-6014878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):41, 33

               
               
               Conread position:426-633
               
               
               Cow position:chr29:8163862-8164073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):72, 37

               
               
               Conread position:444-632
               
               
               Cow position:chr29:3503032-3502846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):25, 101

               
               
               Conread position:445-632
               
               
               Cow position:chr29:39643153-39642965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):51, 34

               
               
               Conread position:446-632
               
               
               Cow position:chr29:35738295-35738481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):90, 17

               
               
               Conread position:454-632
               
               
               Cow position:chr29:94584-94760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):17, 112

               
               
               Conread position:463-629
               
               
               Cow position:chr29:4805192-4805025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):42, 113

               
               
               Conread position:470-627
               
               
               Cow position:chr29:11684960-11684806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):28, 47

               
               
               Conread position:470-632
               
               
               Cow position:chr29:3396059-3395899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):30, 109

               
               
               Conread position:470-632
               
               
               Cow position:chr29:4066039-4065876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):28, 160

               
               
               Conread position:470-632
               
               
               Cow position:chr29:21237068-21236905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):24, 40

               
               
               Conread position:471-632
               
               
               Cow position:chr29:19253868-19254034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:471-632
               
               
               Cow position:chr29:19792321-19792492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:471-632
               
               
               Cow position:chr29:45650391-45650555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:481-632
               
               
               Cow position:chr29:26734971-26734822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):17, 53

               
               
               Conread position:490-632
               
               
               Cow position:chr29:44310093-44310240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:491-632
               
               
               Cow position:chr29:18748650-18748798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:493-646
               
               
               Cow position:chr29:10659410-10659573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:494-632
               
               
               Cow position:chr29:2522499-2522367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:106
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:495-607
               
               
               Cow position:chr29:24345524-24345640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:93
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:495-612
               
               
               Cow position:chr29:32211130-32211251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:96
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:495-627
               
               
               Cow position:chr29:32308396-32308529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:495-629
               
               
               Cow position:chr29:5947867-5947995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:495-631
               
               
               Cow position:chr29:13615711-13615854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr29:585203-585070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr29:2414888-2415028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):50, 61

               
               
               Conread position:495-632
               
               
               Cow position:chr29:5098834-5098973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):91, 68

               
               
               Conread position:495-632
               
               
               Cow position:chr29:21000569-21000430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:110
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):42, 50

               
               
               Conread position:495-632
               
               
               Cow position:chr29:22714798-22714939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr29:24103619-24103760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr29:28446330-28446471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:495-650
               
               
               Cow position:chr29:11562541-11562385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:111
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:496-632
               
               
               Cow position:chr29:16756984-16756843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:497-632
               
               
               Cow position:chr29:8125667-8125806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:501-631
               
               
               Cow position:chr29:686266-686402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:501-632
               
               
               Cow position:chr29:13458979-13458847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:505-632
               
               
               Cow position:chr29:40902804-40902931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:511-632
               
               
               Cow position:chr29:23155164-23155039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:517-632
               
               
               Cow position:chr29:22721036-22720916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):26, 116

               
               
               Conread position:522-632
               
               
               Cow position:chr29:29066325-29066215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:522-645
               
               
               Cow position:chr29:21665869-21665746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:94
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:193-632
               
               
               Cow position:chr3:49118817-49119264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:301
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):124, 13

               
               
               Conread position:195-629
               
               
               Cow position:chr3:68303530-68303098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:309
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):124, 165

               
               
               Conread position:198-488
               
               
               Cow position:chr3:48459123-48459419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):114, 8

               
               
               Conread position:199-403
               
               
               Cow position:chr3:2016641-2016433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):30, 146

               
               
               Conread position:199-629
               
               
               Cow position:chr3:53790334-53790771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:290
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):115, 76

               
               
               Conread position:199-632
               
               
               Cow position:chr3:53592472-53592934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:305
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):29, 168

               
               
               Conread position:200-583
               
               
               Cow position:chr3:45667137-45667536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:279
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):21, 32

               
               
               Conread position:200-632
               
               
               Cow position:chr3:17134539-17134106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 143

               
               
               Conread position:201-556
               
               
               Cow position:chr3:24468181-24468536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 30

               
               
               Conread position:202-405
               
               
               Cow position:chr3:23131966-23132173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):112, 29

               
               
               Conread position:202-489
               
               
               Cow position:chr3:23203023-23203324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:204-553
               
               
               Cow position:chr3:23920220-23920584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:254
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):15, 158

               
               
               Conread position:205-419
               
               
               Cow position:chr3:44960150-44959924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):28, 157

               
               
               Conread position:205-632
               
               
               Cow position:chr3:16334005-16333573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:303
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):107, 32

               
               
               Conread position:205-632
               
               
               Cow position:chr3:37187012-37186600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:287
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):31, 132

               
               
               Conread position:206-542
               
               
               Cow position:chr3:22221526-22221177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:238
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):115, 21

               
               
               Conread position:206-632
               
               
               Cow position:chr3:15752434-15752861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:290
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):42, 25

               
               
               Conread position:208-405
               
               
               Cow position:chr3:55730271-55730473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):109, 20

               
               
               Conread position:208-425
               
               
               Cow position:chr3:16710596-16710823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):12, 154

               
               
               Conread position:208-428
               
               
               Cow position:chr3:28902566-28902790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):115, 19

               
               
               Conread position:208-632
               
               
               Cow position:chr3:13899258-13899686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:287
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):196, 20

               
               
               Conread position:208-632
               
               
               Cow position:chr3:42178349-42177925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:273
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):23, 82

               
               
               Conread position:209-405
               
               
               Cow position:chr3:15859187-15859383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):98, 19

               
               
               Conread position:209-631
               
               
               Cow position:chr3:30180282-30179851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 136

               
               
               Conread position:210-602
               
               
               Cow position:chr3:67519980-67520379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 22

               
               
               Conread position:211-389
               
               
               Cow position:chr3:51153241-51153057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):8, 61

               
               
               Conread position:211-416
               
               
               Cow position:chr3:4071572-4071784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):26, 192

               
               
               Conread position:211-578
               
               
               Cow position:chr3:76922475-76922842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:242
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):20, 101

               
               
               Conread position:211-632
               
               
               Cow position:chr3:20674683-20675112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:305
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):93, 58

               
               
               Conread position:212-412
               
               
               Cow position:chr3:76168433-76168642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):8, 148

               
               
               Conread position:212-425
               
               
               Cow position:chr3:35075066-35074855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):109, 18

               
               
               Conread position:212-632
               
               
               Cow position:chr3:8061317-8060899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:284
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):26, 56

               
               
               Conread position:212-632
               
               
               Cow position:chr3:18393204-18393617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 111

               
               
               Conread position:213-419
               
               
               Cow position:chr3:46792579-46792367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):25, 81

               
               
               Conread position:213-420
               
               
               Cow position:chr3:18479102-18479317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):92, 145

               
               
               Conread position:213-519
               
               
               Cow position:chr3:58527566-58527277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):94, 14

               
               
               Conread position:213-616
               
               
               Cow position:chr3:46005824-46006248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:289
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):93, 15

               
               
               Conread position:213-618
               
               
               Cow position:chr3:48253076-48252671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:287
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):18, 129

               
               
               Conread position:213-621
               
               
               Cow position:chr3:14465524-14465930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:288
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):108, 18

               
               
               Conread position:213-632
               
               
               Cow position:chr3:15051759-15052178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 19

               
               
               Conread position:213-632
               
               
               Cow position:chr3:83491275-83490843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:289
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):10, 130

               
               
               Conread position:214-431
               
               
               Cow position:chr3:28896828-28897053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):105, 135

               
               
               Conread position:214-456
               
               
               Cow position:chr3:6182040-6182279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):83, 28

               
               
               Conread position:214-588
               
               
               Cow position:chr3:14599111-14598761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:251
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):153, 13

               
               
               Conread position:214-618
               
               
               Cow position:chr3:59649447-59649039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 47

               
               
               Conread position:214-627
               
               
               Cow position:chr3:55970710-55970276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 152

               
               
               Conread position:214-632
               
               
               Cow position:chr3:14553062-14552645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 17

               
               
               Conread position:214-632
               
               
               Cow position:chr3:17456074-17456502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 144

               
               
               Conread position:214-632
               
               
               Cow position:chr3:51578133-51578554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 17

               
               
               Conread position:214-633
               
               
               Cow position:chr3:57577886-57577460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 14

               
               
               Conread position:214-645
               
               
               Cow position:chr3:9641749-9641318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 94

               
               
               Conread position:215-412
               
               
               Cow position:chr3:32127227-32127415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:215-414
               
               
               Cow position:chr3:75966589-75966796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):22, 189

               
               
               Conread position:215-436
               
               
               Cow position:chr3:3275787-3275557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):94, 127

               
               
               Conread position:215-506
               
               
               Cow position:chr3:18059898-18059594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):24, 144

               
               
               Conread position:215-533
               
               
               Cow position:chr3:55177559-55177885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:205
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:215-622
               
               
               Cow position:chr3:70676423-70675997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:281
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):102, 130

               
               
               Conread position:215-632
               
               
               Cow position:chr3:6853324-6853734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:275
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):105, 14

               
               
               Conread position:215-632
               
               
               Cow position:chr3:13301654-13302089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:307
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):19, 79

               
               
               Conread position:215-632
               
               
               Cow position:chr3:25690996-25690552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:296
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):14, 276

               
               
               Conread position:215-632
               
               
               Cow position:chr3:26066178-26065768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 17

               
               
               Conread position:215-633
               
               
               Cow position:chr3:15159221-15158807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:277
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):91, 30

               
               
               Conread position:216-389
               
               
               Cow position:chr3:68624411-68624229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):21, 134

               
               
               Conread position:216-393
               
               
               Cow position:chr3:44594811-44594629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):108, 15

               
               
               Conread position:216-402
               
               
               Cow position:chr3:6049095-6049290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):59, 143

               
               
               Conread position:216-404
               
               
               Cow position:chr3:83934914-83934722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):99, 12

               
               
               Conread position:216-405
               
               
               Cow position:chr3:79893304-79893502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):21, 142

               
               
               Conread position:216-406
               
               
               Cow position:chr3:78258559-78258760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):82, 146

               
               
               Conread position:216-412
               
               
               Cow position:chr3:51150322-51150118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):21, 40

               
               
               Conread position:216-412
               
               
               Cow position:chr3:78071601-78071801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):82, 138

               
               
               Conread position:216-416
               
               
               Cow position:chr3:18699915-18700128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):15, 136

               
               
               Conread position:216-420
               
               
               Cow position:chr3:4120182-4120385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):87, 15

               
               
               Conread position:216-420
               
               
               Cow position:chr3:58101866-58101658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):93, 127

               
               
               Conread position:216-420
               
               
               Cow position:chr3:70402829-70402625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):96, 126

               
               
               Conread position:216-421
               
               
               Cow position:chr3:43388934-43389150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):101, 143

               
               
               Conread position:216-437
               
               
               Cow position:chr3:58452238-58452008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):15, 107

               
               
               Conread position:216-457
               
               
               Cow position:chr3:42796328-42796578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):111, 14

               
               
               Conread position:216-505
               
               
               Cow position:chr3:51608991-51609288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):26, 144

               
               
               Conread position:216-514
               
               
               Cow position:chr3:22165227-22165533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):91, 15

               
               
               Conread position:216-540
               
               
               Cow position:chr3:60264531-60264857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):91, 36

               
               
               Conread position:216-585
               
               
               Cow position:chr3:75687246-75687625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:255
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):110, 51

               
               
               Conread position:216-590
               
               
               Cow position:chr3:68587212-68586831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:269
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):20, 130

               
               
               Conread position:216-593
               
               
               Cow position:chr3:53875572-53875953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:261
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):103, 16

               
               
               Conread position:216-604
               
               
               Cow position:chr3:55712624-55712220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:278
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):15, 83

               
               
               Conread position:216-611
               
               
               Cow position:chr3:55318705-55319110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 132

               
               
               Conread position:216-613
               
               
               Cow position:chr3:20841687-20842074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:277
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):21, 89

               
               
               Conread position:216-617
               
               
               Cow position:chr3:67698472-67698061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:262
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):15, 211

               
               
               Conread position:216-619
               
               
               Cow position:chr3:45211496-45211075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:283
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):20, 144

               
               
               Conread position:216-624
               
               
               Cow position:chr3:80973542-80973128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:273
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):123, 112

               
               
               Conread position:216-625
               
               
               Cow position:chr3:38864310-38863891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:275
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):27, 101

               
               
               Conread position:216-627
               
               
               Cow position:chr3:68145664-68146064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 53

               
               
               Conread position:216-628
               
               
               Cow position:chr3:53271023-53270597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 23

               
               
               Conread position:216-629
               
               
               Cow position:chr3:59333950-59333537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:274
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):32, 60

               
               
               Conread position:216-631
               
               
               Cow position:chr3:23168877-23169302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:283
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):90, 47

               
               
               Conread position:216-631
               
               
               Cow position:chr3:27274717-27274301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 16

               
               
               Conread position:216-632
               
               
               Cow position:chr3:2025395-2024951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:305
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):20, 146

               
               
               Conread position:216-632
               
               
               Cow position:chr3:18067318-18066901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 12

               
               
               Conread position:216-632
               
               
               Cow position:chr3:31297962-31298393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:284
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):23, 204

               
               
               Conread position:216-632
               
               
               Cow position:chr3:50768871-50768445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:282
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):21, 199

               
               
               Conread position:216-632
               
               
               Cow position:chr3:59391931-59392343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:287
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):15, 131

               
               
               Conread position:216-632
               
               
               Cow position:chr3:59605032-59604637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:285
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):96, 16

               
               
               Conread position:216-632
               
               
               Cow position:chr3:65058891-65058468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 133

               
               
               Conread position:216-632
               
               
               Cow position:chr3:68648366-68647927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 13

               
               
               Conread position:216-632
               
               
               Cow position:chr3:74234372-74233962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:293
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):77, 41

               
               
               Conread position:216-632
               
               
               Cow position:chr3:77188630-77188209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:283
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):111, 20

               
               
               Conread position:216-632
               
               
               Cow position:chr3:79902691-79902270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:284
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):15, 212

               
               
               Conread position:216-633
               
               
               Cow position:chr3:53910294-53909879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:294
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):98, 12

               
               
               Conread position:216-645
               
               
               Cow position:chr3:9662978-9663433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 135

               
               
               Conread position:216-645
               
               
               Cow position:chr3:29887249-29887670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:287
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):31, 42

               
               
               Conread position:216-645
               
               
               Cow position:chr3:53739006-53739436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 14

               
               
               Conread position:216-645
               
               
               Cow position:chr3:54946310-54945878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:283
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):97, 15

               
               
               Conread position:217-325
               
               
               Cow position:chr3:42933675-42933565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:90
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:217-404
               
               
               Cow position:chr3:16362325-16362508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:217-404
               
               
               Cow position:chr3:24220389-24220581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):21, 112

               
               
               Conread position:217-405
               
               
               Cow position:chr3:31115088-31115274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:217-420
               
               
               Cow position:chr3:53604557-53604765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):101, 14

               
               
               Conread position:217-420
               
               
               Cow position:chr3:56948908-56949107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):95, 13

               
               
               Conread position:217-420
               
               
               Cow position:chr3:76056098-76056306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):92, 127

               
               
               Conread position:217-420
               
               
               Cow position:chr3:82195674-82195465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):102, 54

               
               
               Conread position:217-429
               
               
               Cow position:chr3:83889441-83889220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):14, 135

               
               
               Conread position:217-431
               
               
               Cow position:chr3:72027829-72027603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):102, 142

               
               
               Conread position:217-438
               
               
               Cow position:chr3:12090868-12090632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):20, 146

               
               
               Conread position:217-443
               
               
               Cow position:chr3:15973760-15973528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):102, 143

               
               
               Conread position:217-449
               
               
               Cow position:chr3:40212844-40213085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):19, 139

               
               
               Conread position:217-575
               
               
               Cow position:chr3:19793084-19792716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:258
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):104, 11

               
               
               Conread position:217-578
               
               
               Cow position:chr3:70761934-70762302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:239
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):95, 15

               
               
               Conread position:217-582
               
               
               Cow position:chr3:75853149-75853514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:259
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):96, 11

               
               
               Conread position:217-621
               
               
               Cow position:chr3:2199054-2198660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:270
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):205, 82

               
               
               Conread position:217-630
               
               
               Cow position:chr3:76172492-76172893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:283
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):186, 104

               
               
               Conread position:217-632
               
               
               Cow position:chr3:1830383-1830796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 132

               
               
               Conread position:217-632
               
               
               Cow position:chr3:15228654-15229052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:275
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):190, 14

               
               
               Conread position:217-632
               
               
               Cow position:chr3:16547864-16547443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:292
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):14, 149

               
               
               Conread position:217-632
               
               
               Cow position:chr3:18687092-18686683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 126

               
               
               Conread position:217-632
               
               
               Cow position:chr3:31309167-31309588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 14

               
               
               Conread position:218-326
               
               
               Cow position:chr3:59926823-59926714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:89
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:218-405
               
               
               Cow position:chr3:70333037-70333225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):12, 125

               
               
               Conread position:218-407
               
               
               Cow position:chr3:10842005-10841807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):98, 143

               
               
               Conread position:218-420
               
               
               Cow position:chr3:75777877-75778083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):13, 90

               
               
               Conread position:218-441
               
               
               Cow position:chr3:10591326-10591545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):165, 19

               
               
               Conread position:218-539
               
               
               Cow position:chr3:1517321-1517654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:234
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):19, 141

               
               
               Conread position:218-611
               
               
               Cow position:chr3:36375346-36375760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:284
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):14, 135

               
               
               Conread position:218-623
               
               
               Cow position:chr3:74754504-74754105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:256
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):184, 81

               
               
               Conread position:218-627
               
               
               Cow position:chr3:2518351-2518765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:276
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):20, 141

               
               
               Conread position:218-627
               
               
               Cow position:chr3:43233688-43233275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 13

               
               
               Conread position:218-631
               
               
               Cow position:chr3:29813415-29813011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 75

               
               
               Conread position:218-632
               
               
               Cow position:chr3:7330950-7331350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:278
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):118, 14

               
               
               Conread position:218-632
               
               
               Cow position:chr3:20802454-20802863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):247, 10

               
               
               Conread position:218-632
               
               
               Cow position:chr3:22232479-22232876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:270
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):271, 46

               
               
               Conread position:218-632
               
               
               Cow position:chr3:57764400-57763990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:287
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):93, 17

               
               
               Conread position:218-632
               
               
               Cow position:chr3:67744451-67744861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:278
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):25, 46

               
               
               Conread position:218-632
               
               
               Cow position:chr3:71496941-71497378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 14

               
               
               Conread position:219-405
               
               
               Cow position:chr3:11281956-11281762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):100, 9

               
               
               Conread position:219-405
               
               
               Cow position:chr3:64800359-64800554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):107, 140

               
               
               Conread position:219-415
               
               
               Cow position:chr3:27286704-27286502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):15, 136

               
               
               Conread position:219-420
               
               
               Cow position:chr3:15160703-15160501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):94, 13

               
               
               Conread position:219-426
               
               
               Cow position:chr3:34392039-34392245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):90, 10

               
               
               Conread position:219-451
               
               
               Cow position:chr3:4268386-4268628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):107, 140

               
               
               Conread position:219-487
               
               
               Cow position:chr3:39873521-39873784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):181, 13

               
               
               Conread position:219-551
               
               
               Cow position:chr3:81039558-81039898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:232
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):48, 38

               
               
               Conread position:219-574
               
               
               Cow position:chr3:55819937-55819572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:251
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):121, 79

               
               
               Conread position:219-608
               
               
               Cow position:chr3:54373672-54374070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:275
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):80, 12

               
               
               Conread position:219-624
               
               
               Cow position:chr3:14725505-14725072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:293
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):18, 142

               
               
               Conread position:219-624
               
               
               Cow position:chr3:39066516-39066108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:276
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):107, 18

               
               
               Conread position:219-627
               
               
               Cow position:chr3:23734900-23735331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:292
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):18, 138

               
               
               Conread position:219-630
               
               
               Cow position:chr3:83474942-83474516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:280
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):101, 256

               
               
               Conread position:219-631
               
               
               Cow position:chr3:4456911-4457308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:277
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):190, 9

               
               
               Conread position:219-632
               
               
               Cow position:chr3:2675217-2674796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 9

               
               
               Conread position:219-632
               
               
               Cow position:chr3:18459349-18459753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 44

               
               
               Conread position:219-632
               
               
               Cow position:chr3:23877183-23876765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:284
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):18, 28

               
               
               Conread position:219-645
               
               
               Cow position:chr3:14601523-14601960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:313
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):14, 46

               
               
               Conread position:219-645
               
               
               Cow position:chr3:17694813-17695251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:295
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):17, 141

               
               
               Conread position:219-645
               
               
               Cow position:chr3:76138648-76138243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:285
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):25, 101

               
               
               Conread position:220-326
               
               
               Cow position:chr3:51543627-51543518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:90
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:220-420
               
               
               Cow position:chr3:62789762-62789973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):18, 142

               
               
               Conread position:220-423
               
               
               Cow position:chr3:61023834-61024047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):95, 22

               
               
               Conread position:220-598
               
               
               Cow position:chr3:71478779-71478391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:254
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):87, 46

               
               
               Conread position:220-605
               
               
               Cow position:chr3:83699681-83700080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:261
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):96, 137

               
               
               Conread position:220-624
               
               
               Cow position:chr3:7763845-7763439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:286
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):98, 140

               
               
               Conread position:220-629
               
               
               Cow position:chr3:189059-188629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:282
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):103, 11

               
               
               Conread position:220-629
               
               
               Cow position:chr3:210511-210093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 140

               
               
               Conread position:220-632
               
               
               Cow position:chr3:17957651-17957233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:274
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):9, 257

               
               
               Conread position:220-632
               
               
               Cow position:chr3:50614808-50614406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:275
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):188, 11

               
               
               Conread position:220-632
               
               
               Cow position:chr3:53222199-53221781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 197

               
               
               Conread position:220-632
               
               
               Cow position:chr3:53384096-53384516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:294
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):90, 8

               
               
               Conread position:221-326
               
               
               Cow position:chr3:45183636-45183740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:86
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:221-326
               
               
               Cow position:chr3:61680502-61680398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:87
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:221-420
               
               
               Cow position:chr3:18831606-18831402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):19, 129

               
               
               Conread position:221-557
               
               
               Cow position:chr3:15153875-15153534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:233
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):15, 124

               
               
               Conread position:221-630
               
               
               Cow position:chr3:79591709-79592120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:270
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):13, 78

               
               
               Conread position:221-631
               
               
               Cow position:chr3:33252706-33253113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 132

               
               
               Conread position:221-632
               
               
               Cow position:chr3:2396610-2397016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:272
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):129, 11

               
               
               Conread position:221-632
               
               
               Cow position:chr3:28908030-28908428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:280
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):182, 70

               
               
               Conread position:221-632
               
               
               Cow position:chr3:37041601-37041194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:296
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):100, 11

               
               
               Conread position:223-631
               
               
               Cow position:chr3:5365849-5365454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:275
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):183, 77

               
               
               Conread position:224-607
               
               
               Cow position:chr3:76267789-76268189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:267
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):5, 126

               
               
               Conread position:224-627
               
               
               Cow position:chr3:56583031-56582615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:280
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):77, 127

               
               
               Conread position:224-632
               
               
               Cow position:chr3:2506293-2506714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 126

               
               
               Conread position:224-633
               
               
               Cow position:chr3:18185264-18184834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:278
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):25, 140

               
               
               Conread position:225-620
               
               
               Cow position:chr3:11063543-11063157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:272
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):16, 7

               
               
               Conread position:226-475
               
               
               Cow position:chr3:30357691-30357444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):11, 77

               
               
               Conread position:226-632
               
               
               Cow position:chr3:49328115-49327704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:266
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):30, 57

               
               
               Conread position:227-393
               
               
               Cow position:chr3:31804590-31804751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:227-420
               
               
               Cow position:chr3:31793701-31793903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):91, 133

               
               
               Conread position:227-614
               
               
               Cow position:chr3:76713132-76713537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:283
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):73, 195

               
               
               Conread position:228-420
               
               
               Cow position:chr3:59681728-59681923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):71, 116

               
               
               Conread position:228-426
               
               
               Cow position:chr3:73513883-73514074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):11, 61

               
               
               Conread position:228-586
               
               
               Cow position:chr3:19199167-19198800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:244
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):8, 46

               
               
               Conread position:228-626
               
               
               Cow position:chr3:67929079-67929495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:276
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):8, 124

               
               
               Conread position:228-627
               
               
               Cow position:chr3:75050444-75050846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:265
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):87, 27

               
               
               Conread position:228-630
               
               
               Cow position:chr3:60933597-60933184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:285
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):98, 133

               
               
               Conread position:228-630
               
               
               Cow position:chr3:75480177-75479781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:276
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):75, 110

               
               
               Conread position:228-632
               
               
               Cow position:chr3:39661274-39661683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:278
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):8, 134

               
               
               Conread position:228-632
               
               
               Cow position:chr3:49482534-49482942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:294
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):9, 39

               
               
               Conread position:228-632
               
               
               Cow position:chr3:57754296-57754717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:285
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):86, 131

               
               
               Conread position:228-632
               
               
               Cow position:chr3:71231577-71231173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:298
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):71, 122

               
               
               Conread position:228-645
               
               
               Cow position:chr3:4461311-4461735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:275
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):83, 35

               
               
               Conread position:228-645
               
               
               Cow position:chr3:29596575-29596148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:296
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):8, 39

               
               
               Conread position:228-645
               
               
               Cow position:chr3:83454978-83455398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:279
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):96, 29

               
               
               Conread position:231-632
               
               
               Cow position:chr3:44932688-44932275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 120

               
               
               Conread position:232-325
               
               
               Cow position:chr3:33460424-33460517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:94
               
               
               Alignm identity:82
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:232-326
               
               
               Cow position:chr3:10454019-10453925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:95
               
               
               Alignm identity:81
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:232-387
               
               
               Cow position:chr3:49787731-49787572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):75, 122

               
               
               Conread position:232-404
               
               
               Cow position:chr3:635353-635174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):87, 39

               
               
               Conread position:232-405
               
               
               Cow position:chr3:61224574-61224748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):98, 87

               
               
               Conread position:232-416
               
               
               Cow position:chr3:27246792-27246976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):80, 67

               
               
               Conread position:232-418
               
               
               Cow position:chr3:79272401-79272590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):89, 121

               
               
               Conread position:232-422
               
               
               Cow position:chr3:23037333-23037530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):85, 50

               
               
               Conread position:232-434
               
               
               Cow position:chr3:23640514-23640309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):75, 186

               
               
               Conread position:232-438
               
               
               Cow position:chr3:54905781-54905577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):182, 80

               
               
               Conread position:232-438
               
               
               Cow position:chr3:82366304-82366088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):73, 116

               
               
               Conread position:232-468
               
               
               Cow position:chr3:3698819-3698586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):171, 74

               
               
               Conread position:232-528
               
               
               Cow position:chr3:35055801-35056108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):87, 122

               
               
               Conread position:232-539
               
               
               Cow position:chr3:15443551-15443870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):87, 127

               
               
               Conread position:232-539
               
               
               Cow position:chr3:48900155-48900478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):60, 118

               
               
               Conread position:232-551
               
               
               Cow position:chr3:2648333-2648666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:238
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):87, 115

               
               
               Conread position:232-551
               
               
               Cow position:chr3:29946561-29946242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):87, 10

               
               
               Conread position:232-551
               
               
               Cow position:chr3:70333794-70334117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:231
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):111, 177

               
               
               Conread position:232-561
               
               
               Cow position:chr3:58764911-58765239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):171, 67

               
               
               Conread position:232-593
               
               
               Cow position:chr3:38828926-38828572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:258
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):81, 45

               
               
               Conread position:232-605
               
               
               Cow position:chr3:29359989-29360336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:232-614
               
               
               Cow position:chr3:70609800-70609407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:252
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):81, 47

               
               
               Conread position:232-622
               
               
               Cow position:chr3:20663367-20663761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:274
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):83, 133

               
               
               Conread position:232-629
               
               
               Cow position:chr3:20130112-20129712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:262
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):89, 128

               
               
               Conread position:232-630
               
               
               Cow position:chr3:3985492-3985099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 81

               
               
               Conread position:232-630
               
               
               Cow position:chr3:54903742-54903337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:287
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):92, 129

               
               
               Conread position:232-630
               
               
               Cow position:chr3:68707847-68708238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):349, 84

               
               
               Conread position:232-630
               
               
               Cow position:chr3:68880956-68881346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):351, 73

               
               
               Conread position:232-630
               
               
               Cow position:chr3:75570271-75570673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:280
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):71, 56

               
               
               Conread position:232-630
               
               
               Cow position:chr3:80740728-80740341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:268
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):83, 31

               
               
               Conread position:232-631
               
               
               Cow position:chr3:13329618-13330005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):220, 109

               
               
               Conread position:232-631
               
               
               Cow position:chr3:31419870-31419469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:278
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):96, 184

               
               
               Conread position:232-631
               
               
               Cow position:chr3:39969688-39970104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 182

               
               
               Conread position:232-631
               
               
               Cow position:chr3:52651905-52652306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:282
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):89, 116

               
               
               Conread position:232-632
               
               
               Cow position:chr3:525502-525121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:266
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):11, 34

               
               
               Conread position:232-632
               
               
               Cow position:chr3:2392794-2393199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 114

               
               
               Conread position:232-632
               
               
               Cow position:chr3:5374484-5374100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):328, 34

               
               
               Conread position:232-632
               
               
               Cow position:chr3:8393514-8393113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:281
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):77, 19

               
               
               Conread position:232-632
               
               
               Cow position:chr3:17936672-17937072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:271
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):172, 95

               
               
               Conread position:232-632
               
               
               Cow position:chr3:20996827-20997213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:282
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):89, 82

               
               
               Conread position:232-632
               
               
               Cow position:chr3:21081205-21081619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:270
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):88, 31

               
               
               Conread position:232-632
               
               
               Cow position:chr3:23091822-23092216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:264
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):176, 52

               
               
               Conread position:232-632
               
               
               Cow position:chr3:24852414-24852820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:271
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):49, 31

               
               
               Conread position:232-632
               
               
               Cow position:chr3:45882074-45881676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 182

               
               
               Conread position:232-632
               
               
               Cow position:chr3:49460751-49461170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:276
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):94, 48

               
               
               Conread position:232-632
               
               
               Cow position:chr3:55189575-55189984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:277
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):75, 185

               
               
               Conread position:232-632
               
               
               Cow position:chr3:56476849-56476449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 47

               
               
               Conread position:232-632
               
               
               Cow position:chr3:59366709-59366314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:280
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):177, 106

               
               
               Conread position:232-632
               
               
               Cow position:chr3:59474295-59473879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:281
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):63, 113

               
               
               Conread position:232-632
               
               
               Cow position:chr3:59610544-59610957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:273
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):92, 60

               
               
               Conread position:232-632
               
               
               Cow position:chr3:61857683-61857263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:280
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):94, 15

               
               
               Conread position:232-632
               
               
               Cow position:chr3:77365117-77365527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:283
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):75, 25

               
               
               Conread position:232-632
               
               
               Cow position:chr3:78077365-78076956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:270
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):73, 188

               
               
               Conread position:232-632
               
               
               Cow position:chr3:79884305-79884720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 132

               
               
               Conread position:232-633
               
               
               Cow position:chr3:48363244-48362849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:275
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):80, 219

               
               
               Conread position:232-643
               
               
               Cow position:chr3:13353539-13353113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:276
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):73, 63

               
               
               Conread position:232-645
               
               
               Cow position:chr3:5044635-5045056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:286
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):92, 127

               
               
               Conread position:232-645
               
               
               Cow position:chr3:73395290-73394870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 53

               
               
               Conread position:233-380
               
               
               Cow position:chr3:22899557-22899712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):88, 114

               
               
               Conread position:233-410
               
               
               Cow position:chr3:23753658-23753484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):80, 108

               
               
               Conread position:233-418
               
               
               Cow position:chr3:39996720-39996906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):80, 9

               
               
               Conread position:233-539
               
               
               Cow position:chr3:3883646-3883959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):90, 111

               
               
               Conread position:233-615
               
               
               Cow position:chr3:4319893-4319494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:274
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):44, 232

               
               
               Conread position:233-628
               
               
               Cow position:chr3:65413092-65413505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:291
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):28, 126

               
               
               Conread position:234-420
               
               
               Cow position:chr3:59272004-59271812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):83, 114

               
               
               Conread position:234-561
               
               
               Cow position:chr3:68616162-68616487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):73, 175

               
               
               Conread position:234-585
               
               
               Cow position:chr3:59597346-59596999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:244
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):78, 104

               
               
               Conread position:234-606
               
               
               Cow position:chr3:77582279-77581900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:250
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):71, 213

               
               
               Conread position:234-631
               
               
               Cow position:chr3:52608354-52607951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:275
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):87, 178

               
               
               Conread position:234-631
               
               
               Cow position:chr3:64280765-64281168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 86

               
               
               Conread position:234-631
               
               
               Cow position:chr3:71238322-71237925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 9

               
               
               Conread position:234-632
               
               
               Cow position:chr3:10958071-10958462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:276
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):86, 29

               
               
               Conread position:234-632
               
               
               Cow position:chr3:65237196-65236792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:271
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):87, 108

               
               
               Conread position:235-539
               
               
               Cow position:chr3:21014784-21015100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):82, 31

               
               
               Conread position:235-632
               
               
               Cow position:chr3:30463004-30463399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 42

               
               
               Conread position:235-632
               
               
               Cow position:chr3:48241778-48241388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 9

               
               
               Conread position:236-542
               
               
               Cow position:chr3:3889406-3889710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):169, 70

               
               
               Conread position:236-621
               
               
               Cow position:chr3:83215440-83215031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:281
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):67, 119

               
               
               Conread position:236-624
               
               
               Cow position:chr3:71161959-71161569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:263
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):60, 32

               
               
               Conread position:236-630
               
               
               Cow position:chr3:53150504-53150096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:284
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):68, 253

               
               
               Conread position:236-631
               
               
               Cow position:chr3:26970982-26970593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:271
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):69, 22

               
               
               Conread position:236-631
               
               
               Cow position:chr3:70896210-70895814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:267
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):35, 44

               
               
               Conread position:236-632
               
               
               Cow position:chr3:13577048-13577419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:267
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):190, 57

               
               
               Conread position:236-632
               
               
               Cow position:chr3:23471292-23471701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 108

               
               
               Conread position:236-632
               
               
               Cow position:chr3:26904270-26903882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:271
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):131, 62

               
               
               Conread position:236-632
               
               
               Cow position:chr3:54435139-54434740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 100

               
               
               Conread position:236-632
               
               
               Cow position:chr3:73764044-73764429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 78

               
               
               Conread position:236-632
               
               
               Cow position:chr3:74088006-74088407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:274
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):90, 125

               
               
               Conread position:236-632
               
               
               Cow position:chr3:74533505-74533115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:272
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):169, 71

               
               
               Conread position:236-633
               
               
               Cow position:chr3:60597708-60597314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:272
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):76, 107

               
               
               Conread position:237-449
               
               
               Cow position:chr3:10668709-10668931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:237-583
               
               
               Cow position:chr3:57274228-57273882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:241
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):81, 38

               
               
               Conread position:237-632
               
               
               Cow position:chr3:7678835-7678438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:272
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):58, 117

               
               
               Conread position:238-419
               
               
               Cow position:chr3:70756470-70756660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):69, 112

               
               
               Conread position:238-624
               
               
               Cow position:chr3:49679303-49678897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:273
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):65, 124

               
               
               Conread position:240-428
               
               
               Cow position:chr3:74787592-74787400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):53, 12

               
               
               Conread position:240-539
               
               
               Cow position:chr3:73820198-73820510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):63, 23

               
               
               Conread position:242-419
               
               
               Cow position:chr3:62370222-62370037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):76, 117

               
               
               Conread position:242-631
               
               
               Cow position:chr3:65969339-65968922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:287
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):78, 113

               
               
               Conread position:242-631
               
               
               Cow position:chr3:74500422-74499992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:291
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):45, 52

               
               
               Conread position:242-632
               
               
               Cow position:chr3:72585-72182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:279
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):156, 64

               
               
               Conread position:242-632
               
               
               Cow position:chr3:17221968-17222377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:272
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):62, 225

               
               
               Conread position:242-632
               
               
               Cow position:chr3:51233939-51234329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):142, 79

               
               
               Conread position:242-632
               
               
               Cow position:chr3:55124120-55124511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:268
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):93, 22

               
               
               Conread position:243-632
               
               
               Cow position:chr3:20471221-20471593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:256
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):172, 44

               
               
               Conread position:243-632
               
               
               Cow position:chr3:78443403-78443796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:269
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):78, 120

               
               
               Conread position:243-633
               
               
               Cow position:chr3:59000599-59000980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 98

               
               
               Conread position:244-632
               
               
               Cow position:chr3:80053386-80053767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:231
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):164, 102

               
               
               Conread position:244-645
               
               
               Cow position:chr3:45647829-45647430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 71

               
               
               Conread position:246-393
               
               
               Cow position:chr3:6579641-6579493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):75, 17

               
               
               Conread position:246-400
               
               
               Cow position:chr3:5003793-5003634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):75, 108

               
               
               Conread position:246-536
               
               
               Cow position:chr3:13380117-13380424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):63, 107

               
               
               Conread position:246-551
               
               
               Cow position:chr3:19793429-19793745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:227
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):79, 102

               
               
               Conread position:246-627
               
               
               Cow position:chr3:2036465-2036070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:259
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):93, 167

               
               
               Conread position:246-628
               
               
               Cow position:chr3:66900566-66900971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:278
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):67, 11

               
               
               Conread position:246-631
               
               
               Cow position:chr3:58540356-58540765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:277
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):60, 107

               
               
               Conread position:246-632
               
               
               Cow position:chr3:7566260-7566652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 97

               
               
               Conread position:246-632
               
               
               Cow position:chr3:70334531-70334934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:278
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):82, 113

               
               
               Conread position:246-632
               
               
               Cow position:chr3:75158516-75158132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:268
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):97, 17

               
               
               Conread position:246-633
               
               
               Cow position:chr3:53046497-53046891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 216

               
               
               Conread position:246-635
               
               
               Cow position:chr3:78092350-78092745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:274
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):49, 108

               
               
               Conread position:246-650
               
               
               Cow position:chr3:82055967-82056369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:276
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):251, 51

               
               
               Conread position:247-550
               
               
               Cow position:chr3:12978455-12978768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:211
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):79, 110

               
               
               Conread position:247-584
               
               
               Cow position:chr3:74079478-74079824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):68, 226

               
               
               Conread position:247-643
               
               
               Cow position:chr3:11987488-11987083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:276
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):73, 109

               
               
               Conread position:248-626
               
               
               Cow position:chr3:74119271-74119673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:273
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):72, 18

               
               
               Conread position:251-524
               
               
               Cow position:chr3:56678191-56678479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):75, 108

               
               
               Conread position:251-632
               
               
               Cow position:chr3:18855234-18854860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:266
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):76, 110

               
               
               Conread position:252-628
               
               
               Cow position:chr3:34271054-34270700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:255
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):99, 39

               
               
               Conread position:252-632
               
               
               Cow position:chr3:15388374-15387978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:265
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):67, 11

               
               
               Conread position:257-616
               
               
               Cow position:chr3:25945245-25944860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:251
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):69, 27

               
               
               Conread position:259-624
               
               
               Cow position:chr3:74134855-74134480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:255
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):34, 29

               
               
               Conread position:261-590
               
               
               Cow position:chr3:44102113-44101778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):65, 94

               
               
               Conread position:261-631
               
               
               Cow position:chr3:55010025-55010387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:247
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):52, 80

               
               
               Conread position:261-632
               
               
               Cow position:chr3:72391234-72390847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:279
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):58, 101

               
               
               Conread position:262-632
               
               
               Cow position:chr3:54960311-54959957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:251
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):64, 80

               
               
               Conread position:270-645
               
               
               Cow position:chr3:68582870-68583249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:238
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):117, 71

               
               
               Conread position:271-632
               
               
               Cow position:chr3:77271142-77271500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:249
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):35, 79

               
               
               Conread position:273-632
               
               
               Cow position:chr3:6690137-6689761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:257
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):49, 86

               
               
               Conread position:273-632
               
               
               Cow position:chr3:6873129-6873478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):227, 30

               
               
               Conread position:273-632
               
               
               Cow position:chr3:73709181-73708816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 140

               
               
               Conread position:277-632
               
               
               Cow position:chr3:80565094-80564727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:246
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):44, 163

               
               
               Conread position:279-632
               
               
               Cow position:chr3:28898091-28898456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:259
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):40, 81

               
               
               Conread position:285-631
               
               
               Cow position:chr3:82461298-82460952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):30, 168

               
               
               Conread position:290-632
               
               
               Cow position:chr3:55835707-55836062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):6, 120

               
               
               Conread position:292-593
               
               
               Cow position:chr3:66883836-66884135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):32, 7

               
               
               Conread position:295-632
               
               
               Cow position:chr3:67704655-67704307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:234
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):20, 259

               
               
               Conread position:297-630
               
               
               Cow position:chr3:49650492-49650148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:244
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):16, 53

               
               
               Conread position:298-631
               
               
               Cow position:chr3:73442994-73443319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:229
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):97, 22

               
               
               Conread position:298-632
               
               
               Cow position:chr3:12711813-12712156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:236
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):107, 43

               
               
               Conread position:298-632
               
               
               Cow position:chr3:17934835-17935156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):36, 44

               
               
               Conread position:299-562
               
               
               Cow position:chr3:59883965-59884236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):23, 165

               
               
               Conread position:299-628
               
               
               Cow position:chr3:59621547-59621865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):103, 42

               
               
               Conread position:299-632
               
               
               Cow position:chr3:5097307-5096971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 12

               
               
               Conread position:299-632
               
               
               Cow position:chr3:17447514-17447841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:223
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):104, 21

               
               
               Conread position:299-632
               
               
               Cow position:chr3:45534194-45534533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):96, 141

               
               
               Conread position:299-632
               
               
               Cow position:chr3:48296803-48296476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):22, 99

               
               
               Conread position:299-632
               
               
               Cow position:chr3:59630412-59630732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:226
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):199, 42

               
               
               Conread position:299-632
               
               
               Cow position:chr3:70899991-70899667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:218
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):124, 48

               
               
               Conread position:299-632
               
               
               Cow position:chr3:80072230-80071883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):84, 36

               
               
               Conread position:299-632
               
               
               Cow position:chr3:81470989-81471334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:245
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):22, 48

               
               
               Conread position:300-630
               
               
               Cow position:chr3:38347289-38346970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:231
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):104, 13

               
               
               Conread position:303-592
               
               
               Cow position:chr3:63269322-63269032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):26, 149

               
               
               Conread position:303-631
               
               
               Cow position:chr3:38691309-38691638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:236
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):106, 38

               
               
               Conread position:308-630
               
               
               Cow position:chr3:27532561-27532893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):21, 61

               
               
               Conread position:308-632
               
               
               Cow position:chr3:33327803-33327471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):21, 128

               
               
               Conread position:310-632
               
               
               Cow position:chr3:58968811-58969129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):11, 150

               
               
               Conread position:314-645
               
               
               Cow position:chr3:62826532-62826869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):94, 62

               
               
               Conread position:317-632
               
               
               Cow position:chr3:19006741-19006434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):78, 118

               
               
               Conread position:318-632
               
               
               Cow position:chr3:79292910-79292601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:232
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):89, 23

               
               
               Conread position:319-605
               
               
               Cow position:chr3:27696898-27697189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):95, 22

               
               
               Conread position:319-632
               
               
               Cow position:chr3:8457736-8457422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):96, 48

               
               
               Conread position:319-632
               
               
               Cow position:chr3:55271963-55272276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):83, 136

               
               
               Conread position:319-632
               
               
               Cow position:chr3:56059893-56059574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):17, 13

               
               
               Conread position:319-632
               
               
               Cow position:chr3:61144176-61143860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:211
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):15, 23

               
               
               Conread position:319-632
               
               
               Cow position:chr3:66292094-66292412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):89, 138

               
               
               Conread position:319-632
               
               
               Cow position:chr3:70565656-70565971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):95, 88

               
               
               Conread position:319-632
               
               
               Cow position:chr3:78945757-78946069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):42, 91

               
               
               Conread position:319-645
               
               
               Cow position:chr3:59208876-59208568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:319-645
               
               
               Cow position:chr3:59588592-59588273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):5, 31

               
               
               Conread position:320-631
               
               
               Cow position:chr3:27940062-27940360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):95, 77

               
               
               Conread position:320-632
               
               
               Cow position:chr3:5100691-5100994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):94, 87

               
               
               Conread position:320-632
               
               
               Cow position:chr3:11712046-11711720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):21, 13

               
               
               Conread position:320-632
               
               
               Cow position:chr3:57624545-57624234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 131

               
               
               Conread position:321-623
               
               
               Cow position:chr3:43571827-43571516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):87, 30

               
               
               Conread position:321-626
               
               
               Cow position:chr3:15506528-15506220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):93, 63

               
               
               Conread position:321-632
               
               
               Cow position:chr3:4032043-4031735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:215
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):145, 50

               
               
               Conread position:321-632
               
               
               Cow position:chr3:13507548-13507230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):80, 132

               
               
               Conread position:321-632
               
               
               Cow position:chr3:61840355-61840056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):101, 76

               
               
               Conread position:321-632
               
               
               Cow position:chr3:71430125-71430445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):86, 23

               
               
               Conread position:322-632
               
               
               Cow position:chr3:52863106-52863418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:229
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):85, 27

               
               
               Conread position:323-584
               
               
               Cow position:chr3:74502248-74502507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):85, 18

               
               
               Conread position:323-589
               
               
               Cow position:chr3:34669656-34669918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):91, 18

               
               
               Conread position:323-604
               
               
               Cow position:chr3:57760575-57760293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):23, 16

               
               
               Conread position:323-625
               
               
               Cow position:chr3:26960511-26960821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):23, 18

               
               
               Conread position:323-629
               
               
               Cow position:chr3:14626073-14626382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):85, 18

               
               
               Conread position:323-631
               
               
               Cow position:chr3:52017848-52017525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:216
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):82, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr3:2680590-2680278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):123, 26

               
               
               Conread position:323-632
               
               
               Cow position:chr3:14263469-14263159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):92, 25

               
               
               Conread position:323-632
               
               
               Cow position:chr3:36671918-36672236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):72, 26

               
               
               Conread position:323-632
               
               
               Cow position:chr3:37599351-37599649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):85, 28

               
               
               Conread position:323-632
               
               
               Cow position:chr3:42423251-42423564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:223
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):82, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr3:49383026-49382719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):85, 26

               
               
               Conread position:323-632
               
               
               Cow position:chr3:51012476-51012766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):220, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr3:53113252-53112936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:224
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):79, 30

               
               
               Conread position:323-632
               
               
               Cow position:chr3:55085092-55085417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):85, 26

               
               
               Conread position:323-632
               
               
               Cow position:chr3:58767340-58767046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):86, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr3:75045799-75046105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):29, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr3:80581732-80581438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):177, 18

               
               
               Conread position:324-631
               
               
               Cow position:chr3:2216444-2216127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):84, 25

               
               
               Conread position:324-632
               
               
               Cow position:chr3:46901274-46900961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):84, 17

               
               
               Conread position:325-593
               
               
               Cow position:chr3:3638253-3637992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):173, 16

               
               
               Conread position:325-632
               
               
               Cow position:chr3:8394017-8393706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:223
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):59, 16

               
               
               Conread position:325-632
               
               
               Cow position:chr3:59691963-59691671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:209
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):89, 54

               
               
               Conread position:325-633
               
               
               Cow position:chr3:70401971-70401668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):89, 16

               
               
               Conread position:325-645
               
               
               Cow position:chr3:72676166-72675841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:228
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):89, 16

               
               
               Conread position:328-632
               
               
               Cow position:chr3:15684849-15685150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):94, 36

               
               
               Conread position:328-632
               
               
               Cow position:chr3:44861239-44861541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):103, 39

               
               
               Conread position:333-632
               
               
               Cow position:chr3:26553648-26553945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):81, 8

               
               
               Conread position:334-631
               
               
               Cow position:chr3:17895914-17895622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:209
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):50, 7

               
               
               Conread position:335-628
               
               
               Cow position:chr3:76015358-76015070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):79, 72

               
               
               Conread position:335-630
               
               
               Cow position:chr3:23444822-23445121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):73, 159

               
               
               Conread position:340-554
               
               
               Cow position:chr3:24935426-24935215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):74, 67

               
               
               Conread position:340-631
               
               
               Cow position:chr3:72131237-72131529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:196
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):73, 92

               
               
               Conread position:340-632
               
               
               Cow position:chr3:20437595-20437879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):66, 112

               
               
               Conread position:340-635
               
               
               Cow position:chr3:73759456-73759756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):68, 48

               
               
               Conread position:342-631
               
               
               Cow position:chr3:72019175-72018887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):53, 145

               
               
               Conread position:351-613
               
               
               Cow position:chr3:74878539-74878804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):57, 102

               
               
               Conread position:351-627
               
               
               Cow position:chr3:22089227-22089510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:201
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):25, 29

               
               
               Conread position:351-632
               
               
               Cow position:chr3:51604565-51604840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):189, 58

               
               
               Conread position:351-632
               
               
               Cow position:chr3:61539851-61539563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):56, 34

               
               
               Conread position:351-632
               
               
               Cow position:chr3:66609794-66610071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):62, 99

               
               
               Conread position:351-644
               
               
               Cow position:chr3:31206926-31206627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):63, 56

               
               
               Conread position:352-632
               
               
               Cow position:chr3:79220907-79220617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):62, 53

               
               
               Conread position:352-633
               
               
               Cow position:chr3:14632934-14633221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):56, 108

               
               
               Conread position:353-627
               
               
               Cow position:chr3:80818765-80818500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):94, 54

               
               
               Conread position:355-627
               
               
               Cow position:chr3:50763167-50762896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):66, 54

               
               
               Conread position:356-632
               
               
               Cow position:chr3:66375365-66375088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):11, 23

               
               
               Conread position:357-631
               
               
               Cow position:chr3:53572708-53572982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):82, 50

               
               
               Conread position:361-629
               
               
               Cow position:chr3:19708068-19708332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):137, 90

               
               
               Conread position:361-632
               
               
               Cow position:chr3:22820611-22820336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):54, 24

               
               
               Conread position:361-632
               
               
               Cow position:chr3:39171446-39171717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:201
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):105, 48

               
               
               Conread position:361-632
               
               
               Cow position:chr3:65800625-65800360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):53, 33

               
               
               Conread position:366-632
               
               
               Cow position:chr3:83815752-83816026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):56, 115

               
               
               Conread position:366-645
               
               
               Cow position:chr3:63332853-63332564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):39, 66

               
               
               Conread position:368-615
               
               
               Cow position:chr3:35005809-35005561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):40, 84

               
               
               Conread position:368-631
               
               
               Cow position:chr3:43528199-43528469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):39, 128

               
               
               Conread position:370-630
               
               
               Cow position:chr3:29807494-29807231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):99, 37

               
               
               Conread position:370-645
               
               
               Cow position:chr3:33698762-33698475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):35, 74

               
               
               Conread position:371-632
               
               
               Cow position:chr3:48269887-48269630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):100, 28

               
               
               Conread position:371-632
               
               
               Cow position:chr3:60892655-60892399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):37, 81

               
               
               Conread position:372-632
               
               
               Cow position:chr3:55947613-55947342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):33, 85

               
               
               Conread position:373-631
               
               
               Cow position:chr3:75057106-75057351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:374-637
               
               
               Cow position:chr3:35852444-35852705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):31, 115

               
               
               Conread position:375-613
               
               
               Cow position:chr3:39328426-39328186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):30, 198

               
               
               Conread position:379-632
               
               
               Cow position:chr3:59451612-59451361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):37, 13

               
               
               Conread position:379-645
               
               
               Cow position:chr3:55106417-55106689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):29, 73

               
               
               Conread position:381-632
               
               
               Cow position:chr3:5416200-5416464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):25, 104

               
               
               Conread position:384-632
               
               
               Cow position:chr3:77227337-77227085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:173
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):39, 28

               
               
               Conread position:391-632
               
               
               Cow position:chr3:69849497-69849735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):23, 16

               
               
               Conread position:391-645
               
               
               Cow position:chr3:45648145-45647893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):23, 16

               
               
               Conread position:393-625
               
               
               Cow position:chr3:66866395-66866626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):60, 29

               
               
               Conread position:394-632
               
               
               Cow position:chr3:59515107-59514878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):104, 53

               
               
               Conread position:394-633
               
               
               Cow position:chr3:48530640-48530403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):20, 11

               
               
               Conread position:394-645
               
               
               Cow position:chr3:46350680-46350413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):9, 264

               
               
               Conread position:395-631
               
               
               Cow position:chr3:80081807-80082050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):13, 185

               
               
               Conread position:399-632
               
               
               Cow position:chr3:18763892-18763661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):15, 8

               
               
               Conread position:400-632
               
               
               Cow position:chr3:51255789-51255551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):68, 58

               
               
               Conread position:401-632
               
               
               Cow position:chr3:17952655-17952423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):12, 58

               
               
               Conread position:402-619
               
               
               Cow position:chr3:15859671-15859891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):181, 56

               
               
               Conread position:402-632
               
               
               Cow position:chr3:9843582-9843350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):72, 53

               
               
               Conread position:403-632
               
               
               Cow position:chr3:42483904-42483667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):13, 47

               
               
               Conread position:409-627
               
               
               Cow position:chr3:16362745-16362966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):13, 41

               
               
               Conread position:411-603
               
               
               Cow position:chr3:59885379-59885180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:411-613
               
               
               Cow position:chr3:25060066-25059859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):89, 47

               
               
               Conread position:411-632
               
               
               Cow position:chr3:63860903-63861134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):60, 40

               
               
               Conread position:411-633
               
               
               Cow position:chr3:41366994-41367218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):41, 127

               
               
               Conread position:411-633
               
               
               Cow position:chr3:59271529-59271317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):86, 40

               
               
               Conread position:412-631
               
               
               Cow position:chr3:28692444-28692662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):88, 69

               
               
               Conread position:412-632
               
               
               Cow position:chr3:19789129-19789352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):123, 38

               
               
               Conread position:412-632
               
               
               Cow position:chr3:44534774-44535000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):86, 41

               
               
               Conread position:412-632
               
               
               Cow position:chr3:47284821-47284604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):131, 36

               
               
               Conread position:412-632
               
               
               Cow position:chr3:49731654-49731871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):86, 36

               
               
               Conread position:412-645
               
               
               Cow position:chr3:2903308-2903536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):54, 36

               
               
               Conread position:414-632
               
               
               Cow position:chr3:67161927-67161698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:164
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):82, 37

               
               
               Conread position:414-643
               
               
               Cow position:chr3:5899808-5899578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):75, 39

               
               
               Conread position:415-629
               
               
               Cow position:chr3:4087177-4087396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):28, 165

               
               
               Conread position:418-628
               
               
               Cow position:chr3:45307915-45307705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):82, 35

               
               
               Conread position:429-632
               
               
               Cow position:chr3:78201244-78201034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:441-630
               
               
               Cow position:chr3:73590040-73590230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):25, 13

               
               
               Conread position:443-601
               
               
               Cow position:chr3:7940598-7940758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:117
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:443-631
               
               
               Cow position:chr3:2008219-2008037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):12, 51

               
               
               Conread position:444-632
               
               
               Cow position:chr3:52650574-52650766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:447-632
               
               
               Cow position:chr3:15661746-15661933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):53, 124

               
               
               Conread position:455-632
               
               
               Cow position:chr3:25691700-25691516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):43, 114

               
               
               Conread position:455-632
               
               
               Cow position:chr3:83921142-83920965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):86, 12

               
               
               Conread position:455-633
               
               
               Cow position:chr3:58951561-58951387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):86, 42

               
               
               Conread position:458-630
               
               
               Cow position:chr3:82359985-82359814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):87, 35

               
               
               Conread position:458-632
               
               
               Cow position:chr3:42588300-42588116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:458-633
               
               
               Cow position:chr3:2483389-2483219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):40, 115

               
               
               Conread position:460-645
               
               
               Cow position:chr3:79208057-79208249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:462-632
               
               
               Cow position:chr3:23277604-23277775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):32, 113

               
               
               Conread position:463-624
               
               
               Cow position:chr3:42367564-42367724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):80, 17

               
               
               Conread position:463-627
               
               
               Cow position:chr3:23215634-23215812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:463-632
               
               
               Cow position:chr3:12287169-12287002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):112, 44

               
               
               Conread position:463-632
               
               
               Cow position:chr3:22872109-22872285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:470-632
               
               
               Cow position:chr3:27286163-27285992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:470-632
               
               
               Cow position:chr3:61678625-61678458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):27, 106

               
               
               Conread position:470-637
               
               
               Cow position:chr3:3164564-3164733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):26, 167

               
               
               Conread position:471-631
               
               
               Cow position:chr3:8717182-8717013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):23, 9

               
               
               Conread position:471-632
               
               
               Cow position:chr3:84000543-84000379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:474-630
               
               
               Cow position:chr3:51609748-51609585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:476-627
               
               
               Cow position:chr3:55971151-55970997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:476-632
               
               
               Cow position:chr3:53222716-53222875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:477-645
               
               
               Cow position:chr3:61467532-61467359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:478-632
               
               
               Cow position:chr3:23945020-23944864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):36, 65

               
               
               Conread position:478-632
               
               
               Cow position:chr3:53904102-53903953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):122, 56

               
               
               Conread position:480-632
               
               
               Cow position:chr3:4861609-4861456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:481-630
               
               
               Cow position:chr3:11640353-11640203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):17, 90

               
               
               Conread position:481-660
               
               
               Cow position:chr3:30055527-30055707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):13, 98

               
               
               Conread position:485-615
               
               
               Cow position:chr3:75535027-75534896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:100
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:491-614
               
               
               Cow position:chr3:5082730-5082857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:492-629
               
               
               Cow position:chr3:55445271-55445133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):36, 15

               
               
               Conread position:493-631
               
               
               Cow position:chr3:35074589-35074449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:493-632
               
               
               Cow position:chr3:5851017-5851161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:493-632
               
               
               Cow position:chr3:8604108-8604247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:106
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:493-645
               
               
               Cow position:chr3:69961808-69961957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:494-618
               
               
               Cow position:chr3:55062962-55063087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:98
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:494-631
               
               
               Cow position:chr3:77496726-77496585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:495-624
               
               
               Cow position:chr3:56301440-56301573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:495-627
               
               
               Cow position:chr3:15192472-15192336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:105
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:495-629
               
               
               Cow position:chr3:42594749-42594887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:495-631
               
               
               Cow position:chr3:10347259-10347123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:495-631
               
               
               Cow position:chr3:19198579-19198449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:108
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr3:14717714-14717573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):48, 11

               
               
               Conread position:495-632
               
               
               Cow position:chr3:16004086-16004219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:106
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr3:23270002-23269869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):43, 93

               
               
               Conread position:495-632
               
               
               Cow position:chr3:26894565-26894428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):91, 101

               
               
               Conread position:495-632
               
               
               Cow position:chr3:31047047-31047182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:106
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr3:31501255-31501114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr3:34392193-34392330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):67, 71

               
               
               Conread position:495-632
               
               
               Cow position:chr3:35283190-35283331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr3:41328352-41328222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr3:56704640-56704770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr3:77276503-77276638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:105
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr3:78067229-78067371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr3:80922473-80922335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:105
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):44, 94

               
               
               Conread position:495-645
               
               
               Cow position:chr3:79196476-79196622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:496-632
               
               
               Cow position:chr3:18607275-18607136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):89, 24

               
               
               Conread position:497-645
               
               
               Cow position:chr3:22716379-22716526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:499-632
               
               
               Cow position:chr3:17451030-17451167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:501-632
               
               
               Cow position:chr3:16752356-16752486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:102
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:501-632
               
               
               Cow position:chr3:65020234-65020101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:501-632
               
               
               Cow position:chr3:83201626-83201761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:503-632
               
               
               Cow position:chr3:29334615-29334747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:106
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:503-632
               
               
               Cow position:chr3:58383864-58383735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:503-645
               
               
               Cow position:chr3:36656873-36657016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:106
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:505-620
               
               
               Cow position:chr3:16656583-16656702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:95
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:505-632
               
               
               Cow position:chr3:33693544-33693416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):85, 30

               
               
               Conread position:505-632
               
               
               Cow position:chr3:58158569-58158700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:505-632
               
               
               Cow position:chr3:61262698-61262570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:509-632
               
               
               Cow position:chr3:22907941-22908067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:107
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):77, 55

               
               
               Conread position:509-645
               
               
               Cow position:chr3:84368482-84368616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:109
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):30, 81

               
               
               Conread position:510-632
               
               
               Cow position:chr3:77006389-77006272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:526-637
               
               
               Cow position:chr3:58286025-58286135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:92
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):5, 17

               
               
               Conread position:191-449
               
               
               Cow position:chr4:58018572-58018309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):118, 36

               
               
               Conread position:196-633
               
               
               Cow position:chr4:49813442-49813885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:304
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):35, 97

               
               
               Conread position:197-617
               
               
               Cow position:chr4:29107139-29106697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:295
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):8, 274

               
               
               Conread position:197-632
               
               
               Cow position:chr4:1015302-1014850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 165

               
               
               Conread position:198-399
               
               
               Cow position:chr4:44681035-44681233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:198-629
               
               
               Cow position:chr4:20327501-20327929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:296
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):183, 30

               
               
               Conread position:198-631
               
               
               Cow position:chr4:31136981-31136539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:291
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):40, 390

               
               
               Conread position:199-632
               
               
               Cow position:chr4:36944989-36945409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:276
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):235, 29

               
               
               Conread position:206-325
               
               
               Cow position:chr4:53050211-53050093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:93
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:206-594
               
               
               Cow position:chr4:45076858-45077252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:275
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):14, 140

               
               
               Conread position:206-629
               
               
               Cow position:chr4:65919831-65919403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:288
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):114, 22

               
               
               Conread position:206-632
               
               
               Cow position:chr4:66547543-66547970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:302
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):15, 149

               
               
               Conread position:207-420
               
               
               Cow position:chr4:46560398-46560178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):21, 159

               
               
               Conread position:207-627
               
               
               Cow position:chr4:10472432-10472011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:284
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):26, 79

               
               
               Conread position:208-631
               
               
               Cow position:chr4:4084245-4084662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):199, 17

               
               
               Conread position:208-632
               
               
               Cow position:chr4:23846838-23847268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:283
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):26, 137

               
               
               Conread position:208-645
               
               
               Cow position:chr4:54938094-54937656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 22

               
               
               Conread position:209-628
               
               
               Cow position:chr4:37343338-37342904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:295
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):13, 146

               
               
               Conread position:209-633
               
               
               Cow position:chr4:25227146-25226715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:293
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):176, 23

               
               
               Conread position:210-326
               
               
               Cow position:chr4:11186177-11186064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:210-397
               
               
               Cow position:chr4:46234949-46235139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):117, 143

               
               
               Conread position:210-455
               
               
               Cow position:chr4:26332987-26333235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):111, 142

               
               
               Conread position:210-455
               
               
               Cow position:chr4:26335154-26335402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):104, 142

               
               
               Conread position:210-630
               
               
               Cow position:chr4:19314202-19313789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:294
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):27, 56

               
               
               Conread position:210-632
               
               
               Cow position:chr4:11897091-11897516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:287
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):162, 18

               
               
               Conread position:210-632
               
               
               Cow position:chr4:59055661-59056057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:293
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):198, 29

               
               
               Conread position:210-650
               
               
               Cow position:chr4:68076326-68076764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:300
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):78, 145

               
               
               Conread position:211-326
               
               
               Cow position:chr4:27691452-27691573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:98
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:211-407
               
               
               Cow position:chr4:45840609-45840409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):26, 112

               
               
               Conread position:211-414
               
               
               Cow position:chr4:2713643-2713856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):17, 149

               
               
               Conread position:211-421
               
               
               Cow position:chr4:16091106-16091319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):129, 19

               
               
               Conread position:211-632
               
               
               Cow position:chr4:13326743-13327175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:302
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):119, 27

               
               
               Conread position:211-632
               
               
               Cow position:chr4:32259626-32260064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:301
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):32, 56

               
               
               Conread position:211-645
               
               
               Cow position:chr4:19265794-19265342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:305
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):11, 156

               
               
               Conread position:212-318
               
               
               Cow position:chr4:5904719-5904615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:88
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:212-626
               
               
               Cow position:chr4:23526908-23526486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:299
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):9, 52

               
               
               Conread position:212-632
               
               
               Cow position:chr4:656596-657035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:301
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):25, 123

               
               
               Conread position:212-632
               
               
               Cow position:chr4:25197278-25197715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 149

               
               
               Conread position:212-632
               
               
               Cow position:chr4:37935094-37935498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:295
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):192, 19

               
               
               Conread position:212-645
               
               
               Cow position:chr4:7430520-7430088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:285
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):34, 53

               
               
               Conread position:212-645
               
               
               Cow position:chr4:59785528-59785087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 14

               
               
               Conread position:213-396
               
               
               Cow position:chr4:65291652-65291834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):8, 105

               
               
               Conread position:213-416
               
               
               Cow position:chr4:38949318-38949537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):88, 148

               
               
               Conread position:213-420
               
               
               Cow position:chr4:8083596-8083801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):8, 87

               
               
               Conread position:213-420
               
               
               Cow position:chr4:60527391-60527178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):100, 66

               
               
               Conread position:213-579
               
               
               Cow position:chr4:20124757-20125154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 140

               
               
               Conread position:213-613
               
               
               Cow position:chr4:21391606-21392011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:264
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):25, 47

               
               
               Conread position:213-632
               
               
               Cow position:chr4:16762510-16762949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:299
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):56, 15

               
               
               Conread position:213-632
               
               
               Cow position:chr4:47731071-47730645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:283
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):108, 15

               
               
               Conread position:213-632
               
               
               Cow position:chr4:66256890-66256470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:296
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):24, 51

               
               
               Conread position:213-643
               
               
               Cow position:chr4:27530322-27529885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:297
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):108, 51

               
               
               Conread position:214-600
               
               
               Cow position:chr4:22073111-22073505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:284
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):84, 17

               
               
               Conread position:214-630
               
               
               Cow position:chr4:29291711-29291307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):202, 12

               
               
               Conread position:214-632
               
               
               Cow position:chr4:508701-509115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 58

               
               
               Conread position:214-645
               
               
               Cow position:chr4:3688134-3687698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:291
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):90, 13

               
               
               Conread position:215-444
               
               
               Cow position:chr4:56746202-56745961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):88, 146

               
               
               Conread position:215-560
               
               
               Cow position:chr4:18756646-18756288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:241
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):23, 49

               
               
               Conread position:215-562
               
               
               Cow position:chr4:20026896-20027248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):21, 76

               
               
               Conread position:215-575
               
               
               Cow position:chr4:36290829-36290468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:241
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):88, 17

               
               
               Conread position:215-617
               
               
               Cow position:chr4:61388859-61389276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:276
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):22, 36

               
               
               Conread position:215-630
               
               
               Cow position:chr4:41867655-41867229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 13

               
               
               Conread position:215-632
               
               
               Cow position:chr4:10999504-10999921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 16

               
               
               Conread position:215-632
               
               
               Cow position:chr4:42673388-42672954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:284
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):16, 148

               
               
               Conread position:215-632
               
               
               Cow position:chr4:43148624-43148186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:288
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):21, 137

               
               
               Conread position:215-632
               
               
               Cow position:chr4:46061157-46060729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 147

               
               
               Conread position:216-325
               
               
               Cow position:chr4:47035513-47035623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:91
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:216-397
               
               
               Cow position:chr4:40393018-40392836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):82, 93

               
               
               Conread position:216-403
               
               
               Cow position:chr4:40995942-40995746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):20, 135

               
               
               Conread position:216-403
               
               
               Cow position:chr4:56236345-56236537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):15, 28

               
               
               Conread position:216-405
               
               
               Cow position:chr4:5250395-5250200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):103, 15

               
               
               Conread position:216-405
               
               
               Cow position:chr4:19543150-19542949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):103, 146

               
               
               Conread position:216-405
               
               
               Cow position:chr4:61998991-61999189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):105, 139

               
               
               Conread position:216-417
               
               
               Cow position:chr4:36876652-36876859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):67, 15

               
               
               Conread position:216-421
               
               
               Cow position:chr4:23984911-23985127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):91, 202

               
               
               Conread position:216-422
               
               
               Cow position:chr4:8352357-8352572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):103, 16

               
               
               Conread position:216-432
               
               
               Cow position:chr4:4647614-4647386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):26, 71

               
               
               Conread position:216-432
               
               
               Cow position:chr4:30944160-30943939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):104, 16

               
               
               Conread position:216-510
               
               
               Cow position:chr4:32693997-32693689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:207
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):25, 132

               
               
               Conread position:216-541
               
               
               Cow position:chr4:11611071-11610752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:230
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):71, 103

               
               
               Conread position:216-541
               
               
               Cow position:chr4:13026500-13026174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):53, 21

               
               
               Conread position:216-574
               
               
               Cow position:chr4:47262746-47262373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:252
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):21, 135

               
               
               Conread position:216-588
               
               
               Cow position:chr4:52823195-52823577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:253
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):105, 130

               
               
               Conread position:216-626
               
               
               Cow position:chr4:68764729-68764304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:288
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):12, 138

               
               
               Conread position:216-627
               
               
               Cow position:chr4:65825618-65826067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:305
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):92, 15

               
               
               Conread position:216-628
               
               
               Cow position:chr4:3820629-3820209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:274
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):87, 35

               
               
               Conread position:216-628
               
               
               Cow position:chr4:19584920-19584491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:304
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:216-629
               
               
               Cow position:chr4:10968193-10968599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 15

               
               
               Conread position:216-631
               
               
               Cow position:chr4:21259412-21259000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:266
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):113, 71

               
               
               Conread position:216-632
               
               
               Cow position:chr4:9137496-9137057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:290
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):11, 151

               
               
               Conread position:216-632
               
               
               Cow position:chr4:9795166-9795588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:285
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):15, 154

               
               
               Conread position:216-632
               
               
               Cow position:chr4:13043481-13043053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:287
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):15, 152

               
               
               Conread position:216-632
               
               
               Cow position:chr4:19315795-19316217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 190

               
               
               Conread position:216-632
               
               
               Cow position:chr4:35982204-35981772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 15

               
               
               Conread position:216-632
               
               
               Cow position:chr4:51903818-51903385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:284
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):15, 56

               
               
               Conread position:216-632
               
               
               Cow position:chr4:53126308-53125920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:277
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):118, 27

               
               
               Conread position:216-632
               
               
               Cow position:chr4:54455139-54455561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:278
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):55, 202

               
               
               Conread position:216-632
               
               
               Cow position:chr4:59871686-59871276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 16

               
               
               Conread position:216-633
               
               
               Cow position:chr4:58248613-58248189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 135

               
               
               Conread position:217-405
               
               
               Cow position:chr4:50718997-50718802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):78, 141

               
               
               Conread position:217-406
               
               
               Cow position:chr4:36709230-36709032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):102, 20

               
               
               Conread position:217-420
               
               
               Cow position:chr4:35291229-35291020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):18, 11

               
               
               Conread position:217-449
               
               
               Cow position:chr4:5790851-5790617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):107, 11

               
               
               Conread position:217-562
               
               
               Cow position:chr4:48409082-48409413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:222
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):190, 15

               
               
               Conread position:217-589
               
               
               Cow position:chr4:45685661-45685295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:257
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):10, 127

               
               
               Conread position:217-612
               
               
               Cow position:chr4:17774159-17774547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:264
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):185, 65

               
               
               Conread position:217-621
               
               
               Cow position:chr4:38944052-38944471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:276
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):98, 230

               
               
               Conread position:217-624
               
               
               Cow position:chr4:7964441-7964861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:285
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):99, 140

               
               
               Conread position:217-624
               
               
               Cow position:chr4:30778615-30779044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:281
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):109, 20

               
               
               Conread position:217-631
               
               
               Cow position:chr4:18974632-18974216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:298
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):19, 11

               
               
               Conread position:217-631
               
               
               Cow position:chr4:28771864-28772283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:269
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):104, 33

               
               
               Conread position:217-632
               
               
               Cow position:chr4:11187657-11187242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:285
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):109, 22

               
               
               Conread position:217-632
               
               
               Cow position:chr4:23450883-23451313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 143

               
               
               Conread position:217-632
               
               
               Cow position:chr4:34210241-34209809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:298
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):40, 20

               
               
               Conread position:217-632
               
               
               Cow position:chr4:37915132-37915547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:279
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):104, 257

               
               
               Conread position:217-632
               
               
               Cow position:chr4:52748255-52748675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 58

               
               
               Conread position:217-632
               
               
               Cow position:chr4:54191307-54190877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:290
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):82, 15

               
               
               Conread position:217-645
               
               
               Cow position:chr4:10915628-10916072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:304
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):93, 11

               
               
               Conread position:218-400
               
               
               Cow position:chr4:2770274-2770091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):103, 13

               
               
               Conread position:218-403
               
               
               Cow position:chr4:37985937-37985747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):13, 133

               
               
               Conread position:218-405
               
               
               Cow position:chr4:39010260-39010062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):21, 134

               
               
               Conread position:218-420
               
               
               Cow position:chr4:32562038-32561825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):17, 128

               
               
               Conread position:218-420
               
               
               Cow position:chr4:56410550-56410343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):103, 134

               
               
               Conread position:218-424
               
               
               Cow position:chr4:30769239-30769029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):13, 128

               
               
               Conread position:218-469
               
               
               Cow position:chr4:31178027-31177772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):95, 135

               
               
               Conread position:218-523
               
               
               Cow position:chr4:2774929-2774609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):19, 131

               
               
               Conread position:218-531
               
               
               Cow position:chr4:16513325-16513636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):90, 11

               
               
               Conread position:218-546
               
               
               Cow position:chr4:45837424-45837758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):101, 63

               
               
               Conread position:218-551
               
               
               Cow position:chr4:52780049-52779716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:234
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):104, 10

               
               
               Conread position:218-597
               
               
               Cow position:chr4:34369261-34369635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:257
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):45, 12

               
               
               Conread position:218-632
               
               
               Cow position:chr4:11099454-11099886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:289
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):13, 59

               
               
               Conread position:218-632
               
               
               Cow position:chr4:15871537-15871940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:292
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):134, 10

               
               
               Conread position:218-632
               
               
               Cow position:chr4:21065231-21064821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 82

               
               
               Conread position:218-632
               
               
               Cow position:chr4:34310260-34310672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 45

               
               
               Conread position:218-632
               
               
               Cow position:chr4:56591250-56590813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:300
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):10, 137

               
               
               Conread position:218-645
               
               
               Cow position:chr4:34383130-34383567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 136

               
               
               Conread position:219-325
               
               
               Cow position:chr4:20471084-20470978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:89
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):79, 45

               
               
               Conread position:219-325
               
               
               Cow position:chr4:23809600-23809704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:90
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:219-405
               
               
               Cow position:chr4:63261678-63261483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):18, 127

               
               
               Conread position:219-410
               
               
               Cow position:chr4:3299596-3299782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):94, 12

               
               
               Conread position:219-428
               
               
               Cow position:chr4:15236826-15236622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):188, 9

               
               
               Conread position:219-438
               
               
               Cow position:chr4:26959762-26959993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):100, 128

               
               
               Conread position:219-509
               
               
               Cow position:chr4:14131626-14131342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):94, 12

               
               
               Conread position:219-537
               
               
               Cow position:chr4:22546640-22546959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:229
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):102, 13

               
               
               Conread position:219-613
               
               
               Cow position:chr4:43515927-43515524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:262
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):92, 63

               
               
               Conread position:219-623
               
               
               Cow position:chr4:28839813-28839418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:269
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):281, 13

               
               
               Conread position:219-624
               
               
               Cow position:chr4:46258698-46258276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:288
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):107, 17

               
               
               Conread position:219-625
               
               
               Cow position:chr4:24810248-24810653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:264
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):50, 13

               
               
               Conread position:219-628
               
               
               Cow position:chr4:12127435-12127856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 127

               
               
               Conread position:219-628
               
               
               Cow position:chr4:31505813-31506243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:294
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):18, 132

               
               
               Conread position:219-632
               
               
               Cow position:chr4:3341157-3340734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:277
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):90, 27

               
               
               Conread position:219-632
               
               
               Cow position:chr4:9444479-9444907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 17

               
               
               Conread position:219-632
               
               
               Cow position:chr4:12004422-12004006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:293
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):11, 34

               
               
               Conread position:219-632
               
               
               Cow position:chr4:18095459-18095896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:310
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):79, 12

               
               
               Conread position:219-632
               
               
               Cow position:chr4:22138012-22138453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 141

               
               
               Conread position:219-632
               
               
               Cow position:chr4:24371649-24372068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:288
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):28, 216

               
               
               Conread position:219-632
               
               
               Cow position:chr4:37691108-37691525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:301
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):100, 13

               
               
               Conread position:219-633
               
               
               Cow position:chr4:14414150-14414564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):203, 47

               
               
               Conread position:219-637
               
               
               Cow position:chr4:202937-203367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 54

               
               
               Conread position:220-420
               
               
               Cow position:chr4:23059649-23059860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):89, 138

               
               
               Conread position:220-423
               
               
               Cow position:chr4:22482523-22482317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):44, 121

               
               
               Conread position:220-632
               
               
               Cow position:chr4:36841462-36841062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:267
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):95, 24

               
               
               Conread position:221-421
               
               
               Cow position:chr4:21112371-21112575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):100, 125

               
               
               Conread position:221-601
               
               
               Cow position:chr4:22713295-22713681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 25

               
               
               Conread position:221-628
               
               
               Cow position:chr4:23444836-23445266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 134

               
               
               Conread position:221-630
               
               
               Cow position:chr4:8801690-8801292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:278
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):122, 16

               
               
               Conread position:222-405
               
               
               Cow position:chr4:3853680-3853488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):99, 126

               
               
               Conread position:222-632
               
               
               Cow position:chr4:10025471-10025064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:259
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):15, 123

               
               
               Conread position:222-632
               
               
               Cow position:chr4:19435448-19435043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:272
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):91, 24

               
               
               Conread position:223-627
               
               
               Cow position:chr4:12031049-12030627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:279
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):90, 137

               
               
               Conread position:224-420
               
               
               Cow position:chr4:67393295-67393089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):12, 136

               
               
               Conread position:224-620
               
               
               Cow position:chr4:34022389-34022787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:260
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):76, 7

               
               
               Conread position:227-363
               
               
               Cow position:chr4:61214660-61214796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:103
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):86, 122

               
               
               Conread position:227-504
               
               
               Cow position:chr4:66380139-66380429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):9, 133

               
               
               Conread position:227-632
               
               
               Cow position:chr4:19745065-19744666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:269
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):47, 5

               
               
               Conread position:227-635
               
               
               Cow position:chr4:85890-85475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:270
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):93, 141

               
               
               Conread position:228-404
               
               
               Cow position:chr4:14063101-14063270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:228-405
               
               
               Cow position:chr4:25802890-25802703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):9, 123

               
               
               Conread position:228-420
               
               
               Cow position:chr4:53347785-53347972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):8, 59

               
               
               Conread position:228-428
               
               
               Cow position:chr4:61608772-61608979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):8, 34

               
               
               Conread position:228-449
               
               
               Cow position:chr4:7698461-7698231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):8, 119

               
               
               Conread position:228-538
               
               
               Cow position:chr4:12474047-12473727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:216
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):11, 106

               
               
               Conread position:228-587
               
               
               Cow position:chr4:27632637-27632281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:253
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):8, 39

               
               
               Conread position:228-588
               
               
               Cow position:chr4:16881177-16881536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:255
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):7, 36

               
               
               Conread position:228-617
               
               
               Cow position:chr4:13344731-13344339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:264
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):93, 111

               
               
               Conread position:228-622
               
               
               Cow position:chr4:13284580-13284169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:283
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):11, 106

               
               
               Conread position:228-627
               
               
               Cow position:chr4:51899217-51898791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:278
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):10, 173

               
               
               Conread position:228-631
               
               
               Cow position:chr4:10035100-10034688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:273
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):8, 124

               
               
               Conread position:228-631
               
               
               Cow position:chr4:11004538-11004935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:273
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):8, 129

               
               
               Conread position:228-631
               
               
               Cow position:chr4:27665213-27664789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:286
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):8, 136

               
               
               Conread position:228-631
               
               
               Cow position:chr4:33623909-33623502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:277
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):8, 28

               
               
               Conread position:228-632
               
               
               Cow position:chr4:12049419-12049026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:277
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):162, 31

               
               
               Conread position:228-632
               
               
               Cow position:chr4:43894614-43895022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:296
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):67, 124

               
               
               Conread position:228-632
               
               
               Cow position:chr4:45582927-45583345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:280
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):46, 67

               
               
               Conread position:228-632
               
               
               Cow position:chr4:55270570-55270978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:278
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):8, 133

               
               
               Conread position:228-632
               
               
               Cow position:chr4:56239669-56240062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:274
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):79, 35

               
               
               Conread position:229-632
               
               
               Cow position:chr4:30574656-30574239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:293
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):5, 35

               
               
               Conread position:231-560
               
               
               Cow position:chr4:37313359-37313025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):70, 20

               
               
               Conread position:231-632
               
               
               Cow position:chr4:4186309-4185904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:264
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):99, 20

               
               
               Conread position:231-632
               
               
               Cow position:chr4:19097481-19097074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:270
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):122, 12

               
               
               Conread position:232-326
               
               
               Cow position:chr4:27521751-27521657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:95
               
               
               Alignm identity:80
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:232-404
               
               
               Cow position:chr4:45588240-45588417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):71, 12

               
               
               Conread position:232-412
               
               
               Cow position:chr4:30691193-30691011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):82, 113

               
               
               Conread position:232-413
               
               
               Cow position:chr4:46656325-46656135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):88, 128

               
               
               Conread position:232-422
               
               
               Cow position:chr4:60955512-60955323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):83, 19

               
               
               Conread position:232-452
               
               
               Cow position:chr4:54390823-54391055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):83, 128

               
               
               Conread position:232-471
               
               
               Cow position:chr4:46883476-46883730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):85, 118

               
               
               Conread position:232-518
               
               
               Cow position:chr4:49019507-49019791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):184, 83

               
               
               Conread position:232-522
               
               
               Cow position:chr4:46136940-46136644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):83, 113

               
               
               Conread position:232-539
               
               
               Cow position:chr4:7043626-7043947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):87, 126

               
               
               Conread position:232-539
               
               
               Cow position:chr4:59873617-59873307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:213
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):81, 120

               
               
               Conread position:232-580
               
               
               Cow position:chr4:41370750-41371105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):69, 217

               
               
               Conread position:232-590
               
               
               Cow position:chr4:20147376-20147010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:253
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):89, 116

               
               
               Conread position:232-597
               
               
               Cow position:chr4:50769594-50769950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:252
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):153, 36

               
               
               Conread position:232-610
               
               
               Cow position:chr4:51728265-51727877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:249
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):176, 235

               
               
               Conread position:232-621
               
               
               Cow position:chr4:51769296-51768906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:280
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):94, 28

               
               
               Conread position:232-624
               
               
               Cow position:chr4:36929487-36929104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:271
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):264, 74

               
               
               Conread position:232-626
               
               
               Cow position:chr4:48322228-48321817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 67

               
               
               Conread position:232-629
               
               
               Cow position:chr4:44613196-44612788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 198

               
               
               Conread position:232-631
               
               
               Cow position:chr4:22249277-22249662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:254
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):175, 39

               
               
               Conread position:232-631
               
               
               Cow position:chr4:34631098-34630685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:291
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):67, 189

               
               
               Conread position:232-631
               
               
               Cow position:chr4:51851404-51850980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:282
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):11, 224

               
               
               Conread position:232-632
               
               
               Cow position:chr4:3388733-3388327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 33

               
               
               Conread position:232-632
               
               
               Cow position:chr4:12561210-12560819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:276
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):190, 67

               
               
               Conread position:232-632
               
               
               Cow position:chr4:12676986-12676595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:273
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):73, 216

               
               
               Conread position:232-632
               
               
               Cow position:chr4:13668427-13668834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:287
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):85, 119

               
               
               Conread position:232-632
               
               
               Cow position:chr4:13693483-13693895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 113

               
               
               Conread position:232-632
               
               
               Cow position:chr4:22860536-22860923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:275
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):155, 70

               
               
               Conread position:232-632
               
               
               Cow position:chr4:26659491-26659088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:272
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):88, 210

               
               
               Conread position:232-632
               
               
               Cow position:chr4:30974525-30974119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 116

               
               
               Conread position:232-632
               
               
               Cow position:chr4:31023640-31023224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:288
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):72, 120

               
               
               Conread position:232-632
               
               
               Cow position:chr4:33970714-33971113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:257
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):220, 11

               
               
               Conread position:232-632
               
               
               Cow position:chr4:34641532-34641946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:273
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):76, 118

               
               
               Conread position:232-632
               
               
               Cow position:chr4:48152180-48152585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:272
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):7, 32

               
               
               Conread position:232-632
               
               
               Cow position:chr4:49794841-49794462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:232-633
               
               
               Cow position:chr4:3440584-3440188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:269
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):42, 104

               
               
               Conread position:232-633
               
               
               Cow position:chr4:31348009-31348412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:272
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):173, 74

               
               
               Conread position:232-633
               
               
               Cow position:chr4:56570982-56570586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:276
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):176, 74

               
               
               Conread position:232-633
               
               
               Cow position:chr4:58834226-58834624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:263
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):176, 33

               
               
               Conread position:232-645
               
               
               Cow position:chr4:1985842-1985419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:283
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):94, 127

               
               
               Conread position:232-645
               
               
               Cow position:chr4:12591029-12591441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:299
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):84, 10

               
               
               Conread position:233-420
               
               
               Cow position:chr4:42347677-42347482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):86, 116

               
               
               Conread position:233-455
               
               
               Cow position:chr4:50687675-50687902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):68, 114

               
               
               Conread position:233-539
               
               
               Cow position:chr4:14994364-14994030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):21, 130

               
               
               Conread position:233-562
               
               
               Cow position:chr4:45250163-45249829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):94, 36

               
               
               Conread position:233-632
               
               
               Cow position:chr4:961475-961880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:279
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):173, 74

               
               
               Conread position:233-632
               
               
               Cow position:chr4:44496552-44496167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:267
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):100, 58

               
               
               Conread position:233-632
               
               
               Cow position:chr4:48486186-48485783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:270
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):80, 181

               
               
               Conread position:233-632
               
               
               Cow position:chr4:62472266-62471851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:276
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):88, 49

               
               
               Conread position:234-405
               
               
               Cow position:chr4:66168149-66168320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):161, 106

               
               
               Conread position:234-593
               
               
               Cow position:chr4:17186159-17186531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:250
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):35, 213

               
               
               Conread position:234-630
               
               
               Cow position:chr4:25354717-25354339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:269
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):65, 125

               
               
               Conread position:234-632
               
               
               Cow position:chr4:19709132-19708724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:288
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):93, 125

               
               
               Conread position:236-539
               
               
               Cow position:chr4:34699857-34700162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):133, 70

               
               
               Conread position:236-545
               
               
               Cow position:chr4:19102689-19103006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:218
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):69, 116

               
               
               Conread position:236-546
               
               
               Cow position:chr4:46494488-46494166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):77, 33

               
               
               Conread position:236-554
               
               
               Cow position:chr4:54871836-54872166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):81, 124

               
               
               Conread position:236-580
               
               
               Cow position:chr4:19500901-19501249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):70, 44

               
               
               Conread position:236-593
               
               
               Cow position:chr4:3421811-3421449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:235
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):79, 214

               
               
               Conread position:236-624
               
               
               Cow position:chr4:46527191-46526791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:268
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):85, 122

               
               
               Conread position:236-632
               
               
               Cow position:chr4:19597145-19597532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:271
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):166, 63

               
               
               Conread position:236-632
               
               
               Cow position:chr4:25370281-25369899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:270
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):177, 70

               
               
               Conread position:236-632
               
               
               Cow position:chr4:27276358-27276758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 30

               
               
               Conread position:236-632
               
               
               Cow position:chr4:38935545-38935141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:275
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):74, 33

               
               
               Conread position:236-632
               
               
               Cow position:chr4:40822943-40823332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:260
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):178, 63

               
               
               Conread position:236-632
               
               
               Cow position:chr4:68234150-68233761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:258
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):43, 52

               
               
               Conread position:236-649
               
               
               Cow position:chr4:29384054-29384451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:272
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):167, 105

               
               
               Conread position:236-650
               
               
               Cow position:chr4:13221993-13222411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:291
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):48, 118

               
               
               Conread position:237-531
               
               
               Cow position:chr4:44183934-44184229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):77, 49

               
               
               Conread position:237-613
               
               
               Cow position:chr4:19407805-19408198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:259
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):56, 47

               
               
               Conread position:237-631
               
               
               Cow position:chr4:23509777-23509372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 29

               
               
               Conread position:237-632
               
               
               Cow position:chr4:13590273-13589871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:284
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):68, 122

               
               
               Conread position:237-632
               
               
               Cow position:chr4:19700293-19699883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:276
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):61, 232

               
               
               Conread position:241-615
               
               
               Cow position:chr4:27344500-27344871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:245
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):80, 54

               
               
               Conread position:241-631
               
               
               Cow position:chr4:46455884-46456265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:267
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):80, 33

               
               
               Conread position:242-632
               
               
               Cow position:chr4:3837449-3837062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:259
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):112, 45

               
               
               Conread position:242-645
               
               
               Cow position:chr4:4320812-4321236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 103

               
               
               Conread position:243-550
               
               
               Cow position:chr4:41186221-41186535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):162, 99

               
               
               Conread position:243-629
               
               
               Cow position:chr4:43740711-43740307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 101

               
               
               Conread position:243-630
               
               
               Cow position:chr4:31004232-31004620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 50

               
               
               Conread position:243-631
               
               
               Cow position:chr4:10732401-10732002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 217

               
               
               Conread position:243-632
               
               
               Cow position:chr4:8770274-8769892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:275
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):70, 97

               
               
               Conread position:243-632
               
               
               Cow position:chr4:23646690-23647060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):302, 66

               
               
               Conread position:243-632
               
               
               Cow position:chr4:34165806-34166192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:267
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):64, 56

               
               
               Conread position:243-632
               
               
               Cow position:chr4:60897113-60897490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:266
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):254, 55

               
               
               Conread position:243-645
               
               
               Cow position:chr4:15905286-15904868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 239

               
               
               Conread position:244-562
               
               
               Cow position:chr4:54171804-54171475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):65, 99

               
               
               Conread position:244-632
               
               
               Cow position:chr4:47349000-47348615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:268
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):51, 6

               
               
               Conread position:246-584
               
               
               Cow position:chr4:54478737-54479073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:217
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):52, 86

               
               
               Conread position:246-631
               
               
               Cow position:chr4:46550566-46550168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:276
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):74, 23

               
               
               Conread position:246-632
               
               
               Cow position:chr4:5609914-5610292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:268
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):114, 84

               
               
               Conread position:246-632
               
               
               Cow position:chr4:21531463-21531858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:260
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):64, 347

               
               
               Conread position:246-632
               
               
               Cow position:chr4:26323921-26323516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:269
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):75, 113

               
               
               Conread position:246-632
               
               
               Cow position:chr4:40414451-40414848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:271
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):69, 230

               
               
               Conread position:246-632
               
               
               Cow position:chr4:45775153-45775559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:291
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):54, 109

               
               
               Conread position:246-632
               
               
               Cow position:chr4:53208460-53208084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:249
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):137, 60

               
               
               Conread position:246-632
               
               
               Cow position:chr4:66172618-66173015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:251
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):74, 214

               
               
               Conread position:246-643
               
               
               Cow position:chr4:63349298-63349702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:290
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):74, 193

               
               
               Conread position:246-645
               
               
               Cow position:chr4:22009885-22010289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:275
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):64, 35

               
               
               Conread position:248-568
               
               
               Cow position:chr4:44449349-44449659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):155, 15

               
               
               Conread position:248-632
               
               
               Cow position:chr4:45662330-45662717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:278
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):13, 140

               
               
               Conread position:249-633
               
               
               Cow position:chr4:42423631-42424020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:263
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):69, 200

               
               
               Conread position:251-620
               
               
               Cow position:chr4:16594248-16593878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 28

               
               
               Conread position:253-536
               
               
               Cow position:chr4:5577044-5577324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):75, 100

               
               
               Conread position:255-632
               
               
               Cow position:chr4:17052417-17052815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:267
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):55, 108

               
               
               Conread position:256-449
               
               
               Cow position:chr4:3268203-3268398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):145, 0

               
               
               Conread position:257-632
               
               
               Cow position:chr4:28836704-28836309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:272
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):68, 212

               
               
               Conread position:264-632
               
               
               Cow position:chr4:25888684-25889050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:258
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):150, 51

               
               
               Conread position:264-632
               
               
               Cow position:chr4:38999584-38999209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:261
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):59, 85

               
               
               Conread position:265-630
               
               
               Cow position:chr4:6653882-6653517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:259
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):35, 84

               
               
               Conread position:267-632
               
               
               Cow position:chr4:15624001-15623623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:259
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):45, 32

               
               
               Conread position:268-632
               
               
               Cow position:chr4:36893523-36893136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:262
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):41, 69

               
               
               Conread position:271-632
               
               
               Cow position:chr4:20157272-20157629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:252
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):134, 43

               
               
               Conread position:271-632
               
               
               Cow position:chr4:63964839-63965208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):44, 149

               
               
               Conread position:272-632
               
               
               Cow position:chr4:13256226-13255876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:253
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):48, 65

               
               
               Conread position:277-632
               
               
               Cow position:chr4:7571556-7571192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:243
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):48, 22

               
               
               Conread position:277-632
               
               
               Cow position:chr4:23600315-23599953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:255
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):38, 122

               
               
               Conread position:279-632
               
               
               Cow position:chr4:37344290-37344650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):129, 72

               
               
               Conread position:285-632
               
               
               Cow position:chr4:2602374-2602013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:245
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):24, 138

               
               
               Conread position:294-632
               
               
               Cow position:chr4:11194308-11193965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):93, 41

               
               
               Conread position:294-645
               
               
               Cow position:chr4:26401077-26400726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:244
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):208, 27

               
               
               Conread position:298-632
               
               
               Cow position:chr4:42921741-42922063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):164, 43

               
               
               Conread position:299-631
               
               
               Cow position:chr4:39128655-39128315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:238
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):154, 42

               
               
               Conread position:299-632
               
               
               Cow position:chr4:19542250-19541909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):150, 42

               
               
               Conread position:299-632
               
               
               Cow position:chr4:22344903-22345232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:229
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):109, 68

               
               
               Conread position:299-632
               
               
               Cow position:chr4:45367857-45367516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):66, 50

               
               
               Conread position:299-632
               
               
               Cow position:chr4:65650015-65650342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):35, 43

               
               
               Conread position:299-637
               
               
               Cow position:chr4:13973850-13974194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):13, 44

               
               
               Conread position:300-627
               
               
               Cow position:chr4:10056323-10055999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:226
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):9, 43

               
               
               Conread position:301-643
               
               
               Cow position:chr4:45589485-45589819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:237
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):120, 40

               
               
               Conread position:304-632
               
               
               Cow position:chr4:62771804-62772151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):22, 40

               
               
               Conread position:316-632
               
               
               Cow position:chr4:41602951-41602631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:226
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):25, 17

               
               
               Conread position:316-632
               
               
               Cow position:chr4:63459122-63459433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):181, 17

               
               
               Conread position:317-631
               
               
               Cow position:chr4:25984321-25984012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):44, 94

               
               
               Conread position:318-635
               
               
               Cow position:chr4:5999096-5999417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:225
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):21, 15

               
               
               Conread position:319-630
               
               
               Cow position:chr4:45738376-45738699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):95, 88

               
               
               Conread position:319-632
               
               
               Cow position:chr4:3850650-3850335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):89, 132

               
               
               Conread position:319-632
               
               
               Cow position:chr4:12903920-12903601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:212
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):89, 126

               
               
               Conread position:319-632
               
               
               Cow position:chr4:53100900-53100588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):95, 88

               
               
               Conread position:319-645
               
               
               Cow position:chr4:58880863-58881197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):84, 16

               
               
               Conread position:320-632
               
               
               Cow position:chr4:5460764-5461077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 29

               
               
               Conread position:320-632
               
               
               Cow position:chr4:16736615-16736286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):70, 13

               
               
               Conread position:320-632
               
               
               Cow position:chr4:27755206-27755518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):84, 104

               
               
               Conread position:320-632
               
               
               Cow position:chr4:36731288-36730973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):88, 129

               
               
               Conread position:320-632
               
               
               Cow position:chr4:41300900-41301208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:223
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):69, 21

               
               
               Conread position:320-632
               
               
               Cow position:chr4:44838797-44839102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):88, 21

               
               
               Conread position:321-568
               
               
               Cow position:chr4:59378005-59377761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):82, 20

               
               
               Conread position:321-631
               
               
               Cow position:chr4:18255948-18255647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):25, 20

               
               
               Conread position:321-632
               
               
               Cow position:chr4:41441661-41441348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):56, 28

               
               
               Conread position:321-632
               
               
               Cow position:chr4:45644222-45644529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:212
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):74, 16

               
               
               Conread position:322-631
               
               
               Cow position:chr4:37704361-37704049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:201
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):73, 146

               
               
               Conread position:323-620
               
               
               Cow position:chr4:30792062-30791759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):83, 18

               
               
               Conread position:323-627
               
               
               Cow position:chr4:8705088-8704772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):76, 26

               
               
               Conread position:323-628
               
               
               Cow position:chr4:15462157-15462487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):57, 18

               
               
               Conread position:323-631
               
               
               Cow position:chr4:51784273-51783965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:224
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):85, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr4:19321984-19322296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr4:25879484-25879178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):175, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr4:43865763-43866068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:219
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):99, 26

               
               
               Conread position:323-632
               
               
               Cow position:chr4:44782468-44782157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 20

               
               
               Conread position:323-632
               
               
               Cow position:chr4:46591761-46591442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):85, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr4:46597462-46597165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:218
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):175, 26

               
               
               Conread position:324-632
               
               
               Cow position:chr4:32726317-32726005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):84, 19

               
               
               Conread position:324-632
               
               
               Cow position:chr4:55395855-55395551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):84, 40

               
               
               Conread position:324-645
               
               
               Cow position:chr4:65815614-65815922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):82, 17

               
               
               Conread position:325-631
               
               
               Cow position:chr4:33395606-33395906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):80, 16

               
               
               Conread position:325-632
               
               
               Cow position:chr4:1495317-1495617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:205
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):175, 16

               
               
               Conread position:325-636
               
               
               Cow position:chr4:47351895-47351583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):83, 28

               
               
               Conread position:327-645
               
               
               Cow position:chr4:59008264-59008600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:236
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):6, 15

               
               
               Conread position:328-631
               
               
               Cow position:chr4:36813467-36813156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):80, 39

               
               
               Conread position:332-632
               
               
               Cow position:chr4:123124-123418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:208
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):56, 65

               
               
               Conread position:334-632
               
               
               Cow position:chr4:17111790-17112094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):81, 50

               
               
               Conread position:334-635
               
               
               Cow position:chr4:17474522-17474218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:224
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):71, 15

               
               
               Conread position:337-632
               
               
               Cow position:chr4:16601982-16602269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):144, 93

               
               
               Conread position:337-632
               
               
               Cow position:chr4:16799105-16799410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):71, 115

               
               
               Conread position:337-645
               
               
               Cow position:chr4:21257044-21257359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:339-632
               
               
               Cow position:chr4:54930343-54930633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):82, 60

               
               
               Conread position:340-632
               
               
               Cow position:chr4:13406786-13406489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):67, 27

               
               
               Conread position:342-632
               
               
               Cow position:chr4:65841690-65841979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):62, 73

               
               
               Conread position:345-632
               
               
               Cow position:chr4:44973707-44973425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:202
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):38, 51

               
               
               Conread position:346-627
               
               
               Cow position:chr4:23854252-23853992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):105, 61

               
               
               Conread position:349-632
               
               
               Cow position:chr4:10037485-10037193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):50, 65

               
               
               Conread position:350-632
               
               
               Cow position:chr4:25806967-25806682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):96, 72

               
               
               Conread position:351-632
               
               
               Cow position:chr4:21232807-21233088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):63, 56

               
               
               Conread position:352-628
               
               
               Cow position:chr4:4672270-4672548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):70, 55

               
               
               Conread position:352-631
               
               
               Cow position:chr4:2894097-2893808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:352-631
               
               
               Cow position:chr4:14352623-14352897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):62, 51

               
               
               Conread position:352-645
               
               
               Cow position:chr4:14920055-14919769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):62, 45

               
               
               Conread position:352-645
               
               
               Cow position:chr4:39456105-39455824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):187, 55

               
               
               Conread position:355-632
               
               
               Cow position:chr4:11021588-11021867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):51, 216

               
               
               Conread position:356-627
               
               
               Cow position:chr4:66112009-66112289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:189
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):60, 51

               
               
               Conread position:358-630
               
               
               Cow position:chr4:10905405-10905674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:198
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):43, 100

               
               
               Conread position:358-631
               
               
               Cow position:chr4:21371451-21371178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):50, 92

               
               
               Conread position:358-632
               
               
               Cow position:chr4:51867052-51866778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):131, 100

               
               
               Conread position:359-632
               
               
               Cow position:chr4:39231462-39231740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:206
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):49, 96

               
               
               Conread position:359-645
               
               
               Cow position:chr4:14470512-14470801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):44, 8

               
               
               Conread position:361-631
               
               
               Cow position:chr4:51739660-51739919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):139, 43

               
               
               Conread position:362-631
               
               
               Cow position:chr4:20299330-20299054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):13, 92

               
               
               Conread position:362-645
               
               
               Cow position:chr4:24744349-24744643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):5, 83

               
               
               Conread position:365-624
               
               
               Cow position:chr4:67445198-67444934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):43, 90

               
               
               Conread position:366-579
               
               
               Cow position:chr4:38705721-38705940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:366-632
               
               
               Cow position:chr4:38799149-38799412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):37, 18

               
               
               Conread position:366-635
               
               
               Cow position:chr4:29237118-29237373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:188
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):132, 9

               
               
               Conread position:368-622
               
               
               Cow position:chr4:1354575-1354821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):40, 87

               
               
               Conread position:370-632
               
               
               Cow position:chr4:35939959-35940229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):37, 85

               
               
               Conread position:371-632
               
               
               Cow position:chr4:24688298-24688566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):37, 113

               
               
               Conread position:373-632
               
               
               Cow position:chr4:20139470-20139737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):41, 34

               
               
               Conread position:379-632
               
               
               Cow position:chr4:44024785-44025035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):30, 24

               
               
               Conread position:382-626
               
               
               Cow position:chr4:13832575-13832811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):32, 71

               
               
               Conread position:384-619
               
               
               Cow position:chr4:28543578-28543805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):159, 23

               
               
               Conread position:384-632
               
               
               Cow position:chr4:37619854-37620105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:191
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):24, 73

               
               
               Conread position:386-630
               
               
               Cow position:chr4:5188981-5189222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):26, 86

               
               
               Conread position:391-631
               
               
               Cow position:chr4:2610257-2610020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):23, 18

               
               
               Conread position:396-617
               
               
               Cow position:chr4:19558738-19558513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):60, 17

               
               
               Conread position:399-632
               
               
               Cow position:chr4:43749796-43750029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):101, 23

               
               
               Conread position:399-633
               
               
               Cow position:chr4:5984029-5984263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):144, 39

               
               
               Conread position:400-632
               
               
               Cow position:chr4:24118889-24119126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:185
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):8, 62

               
               
               Conread position:400-632
               
               
               Cow position:chr4:26746495-26746267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):89, 6

               
               
               Conread position:400-632
               
               
               Cow position:chr4:47290090-47289853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):97, 6

               
               
               Conread position:401-645
               
               
               Cow position:chr4:53546044-53545802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):21, 49

               
               
               Conread position:402-632
               
               
               Cow position:chr4:11671464-11671235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):96, 51

               
               
               Conread position:402-632
               
               
               Cow position:chr4:27687939-27687706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):7, 11

               
               
               Conread position:402-632
               
               
               Cow position:chr4:65538405-65538625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):103, 24

               
               
               Conread position:402-645
               
               
               Cow position:chr4:11901547-11901793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:187
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):19, 53

               
               
               Conread position:402-645
               
               
               Cow position:chr4:22849702-22849940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):20, 99

               
               
               Conread position:411-631
               
               
               Cow position:chr4:16637601-16637815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):128, 43

               
               
               Conread position:411-631
               
               
               Cow position:chr4:36725044-36724826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):78, 180

               
               
               Conread position:411-632
               
               
               Cow position:chr4:48137915-48137692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):37, 45

               
               
               Conread position:411-646
               
               
               Cow position:chr4:34924687-34924925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):132, 37

               
               
               Conread position:412-632
               
               
               Cow position:chr4:1915576-1915795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):44, 64

               
               
               Conread position:412-632
               
               
               Cow position:chr4:56233684-56233470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:414-588
               
               
               Cow position:chr4:38887126-38887310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):8, 49

               
               
               Conread position:414-632
               
               
               Cow position:chr4:49089791-49089577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):84, 129

               
               
               Conread position:431-632
               
               
               Cow position:chr4:54501461-54501666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:432-632
               
               
               Cow position:chr4:53833028-53832828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):145, 18

               
               
               Conread position:443-632
               
               
               Cow position:chr4:49993044-49992870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:444-631
               
               
               Cow position:chr4:43909716-43909536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):21, 11

               
               
               Conread position:445-632
               
               
               Cow position:chr4:61215025-61215215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):53, 131

               
               
               Conread position:446-611
               
               
               Cow position:chr4:29813572-29813737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):15, 59

               
               
               Conread position:447-632
               
               
               Cow position:chr4:1237146-1237334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):27, 9

               
               
               Conread position:447-632
               
               
               Cow position:chr4:44072796-44072987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:451-632
               
               
               Cow position:chr4:23911615-23911806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):10, 183

               
               
               Conread position:453-629
               
               
               Cow position:chr4:46668532-46668356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):19, 70

               
               
               Conread position:456-632
               
               
               Cow position:chr4:54667727-54667908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:457-630
               
               
               Cow position:chr4:46708565-46708743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):85, 64

               
               
               Conread position:458-632
               
               
               Cow position:chr4:11090740-11090904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):83, 26

               
               
               Conread position:458-632
               
               
               Cow position:chr4:19561643-19561477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):45, 113

               
               
               Conread position:458-632
               
               
               Cow position:chr4:43495861-43495684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:458-632
               
               
               Cow position:chr4:57555930-57555749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:459-633
               
               
               Cow position:chr4:67392918-67392751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):7, 118

               
               
               Conread position:463-630
               
               
               Cow position:chr4:40410173-40410335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:463-631
               
               
               Cow position:chr4:3475581-3475415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):26, 60

               
               
               Conread position:463-632
               
               
               Cow position:chr4:33421405-33421579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:463-632
               
               
               Cow position:chr4:46370769-46370593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:464-643
               
               
               Cow position:chr4:25359563-25359380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:470-631
               
               
               Cow position:chr4:16091452-16091616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:470-631
               
               
               Cow position:chr4:53999562-53999723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):28, 98

               
               
               Conread position:470-632
               
               
               Cow position:chr4:12259834-12259998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:470-632
               
               
               Cow position:chr4:19542743-19542579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):34, 118

               
               
               Conread position:470-632
               
               
               Cow position:chr4:23060049-23060220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:470-632
               
               
               Cow position:chr4:43369905-43370067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):19, 107

               
               
               Conread position:470-632
               
               
               Cow position:chr4:53447721-53447883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):73, 102

               
               
               Conread position:470-632
               
               
               Cow position:chr4:65168058-65168226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):23, 41

               
               
               Conread position:470-637
               
               
               Cow position:chr4:65730972-65731141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):24, 163

               
               
               Conread position:473-632
               
               
               Cow position:chr4:41292038-41292197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):110, 25

               
               
               Conread position:475-632
               
               
               Cow position:chr4:56852845-56852680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):23, 87

               
               
               Conread position:476-628
               
               
               Cow position:chr4:42232599-42232451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):22, 112

               
               
               Conread position:476-632
               
               
               Cow position:chr4:21064064-21064221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):24, 61

               
               
               Conread position:481-632
               
               
               Cow position:chr4:22259490-22259637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):25, 53

               
               
               Conread position:481-632
               
               
               Cow position:chr4:22744260-22744104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:481-632
               
               
               Cow position:chr4:46275128-46274976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):17, 86

               
               
               Conread position:490-637
               
               
               Cow position:chr4:7249642-7249790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):8, 103

               
               
               Conread position:493-632
               
               
               Cow position:chr4:2536753-2536615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:493-632
               
               
               Cow position:chr4:19497330-19497467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:493-632
               
               
               Cow position:chr4:24458175-24458315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):13, 111

               
               
               Conread position:493-645
               
               
               Cow position:chr4:10412299-10412148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:494-632
               
               
               Cow position:chr4:56514015-56514156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):96, 54

               
               
               Conread position:495-612
               
               
               Cow position:chr4:3689627-3689511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:93
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:495-622
               
               
               Cow position:chr4:46058832-46058958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:98
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:495-630
               
               
               Cow position:chr4:69406291-69406153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):89, 49

               
               
               Conread position:495-631
               
               
               Cow position:chr4:18576854-18576992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):86, 51

               
               
               Conread position:495-631
               
               
               Cow position:chr4:19463415-19463275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:495-631
               
               
               Cow position:chr4:41907872-41908008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr4:620230-620371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr4:2141665-2141528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):42, 50

               
               
               Conread position:495-632
               
               
               Cow position:chr4:11201739-11201600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):44, 84

               
               
               Conread position:495-632
               
               
               Cow position:chr4:11871988-11872129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr4:19142213-19142071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr4:19582697-19582832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:108
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr4:22528467-22528605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr4:27292036-27292176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):88, 117

               
               
               Conread position:495-632
               
               
               Cow position:chr4:33612439-33612580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr4:39009886-39009748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr4:51083438-51083579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):31, 20

               
               
               Conread position:495-633
               
               
               Cow position:chr4:21365326-21365187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):25, 41

               
               
               Conread position:495-645
               
               
               Cow position:chr4:22051553-22051699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):48, 25

               
               
               Conread position:497-631
               
               
               Cow position:chr4:53209157-53209019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:112
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:497-632
               
               
               Cow position:chr4:3251614-3251753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):40, 48

               
               
               Conread position:497-632
               
               
               Cow position:chr4:33357852-33357714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):89, 121

               
               
               Conread position:500-625
               
               
               Cow position:chr4:29842804-29842675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):85, 7

               
               
               Conread position:501-625
               
               
               Cow position:chr4:13608158-13608029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:501-632
               
               
               Cow position:chr4:22072756-22072890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:102
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:503-631
               
               
               Cow position:chr4:480093-480223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:99
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:503-637
               
               
               Cow position:chr4:30690633-30690503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):42, 61

               
               
               Conread position:503-645
               
               
               Cow position:chr4:56410100-56409951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:505-631
               
               
               Cow position:chr4:34337357-34337486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:505-632
               
               
               Cow position:chr4:19438370-19438241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:104
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:505-632
               
               
               Cow position:chr4:27540531-27540404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:102
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:505-632
               
               
               Cow position:chr4:63813395-63813519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:101
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):54, 77

               
               
               Conread position:510-632
               
               
               Cow position:chr4:37465679-37465801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:97
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):35, 107

               
               
               Conread position:512-632
               
               
               Cow position:chr4:46385669-46385795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:535-632
               
               
               Cow position:chr4:52177533-52177434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:86
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):8, 31

               
               
               Conread position:535-645
               
               
               Cow position:chr4:53763239-53763348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:91
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:85-632
               
               
               Cow position:chr5:50638185-50637645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:552
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):454, 245

               
               
               Conread position:197-632
               
               
               Cow position:chr5:55966607-55967067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:305
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):19, 228

               
               
               Conread position:199-632
               
               
               Cow position:chr5:51053388-51053832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 152

               
               
               Conread position:200-372
               
               
               Cow position:chr5:14419758-14419931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):14, 87

               
               
               Conread position:200-451
               
               
               Cow position:chr5:55783705-55783954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:185
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):119, 31

               
               
               Conread position:200-632
               
               
               Cow position:chr5:3772105-3771662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 149

               
               
               Conread position:202-483
               
               
               Cow position:chr5:33273955-33273657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:203-377
               
               
               Cow position:chr5:59958423-59958248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):121, 33

               
               
               Conread position:204-632
               
               
               Cow position:chr5:47888474-47888899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:297
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):14, 46

               
               
               Conread position:205-622
               
               
               Cow position:chr5:62107228-62107669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:282
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):15, 161

               
               
               Conread position:206-406
               
               
               Cow position:chr5:30221527-30221733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):31, 20

               
               
               Conread position:206-496
               
               
               Cow position:chr5:15471170-15470886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):203, 50

               
               
               Conread position:206-563
               
               
               Cow position:chr5:49474303-49474660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:243
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):197, 26

               
               
               Conread position:206-632
               
               
               Cow position:chr5:58320238-58320646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:272
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):207, 93

               
               
               Conread position:206-632
               
               
               Cow position:chr5:65753116-65752672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:299
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):13, 139

               
               
               Conread position:207-375
               
               
               Cow position:chr5:61593516-61593343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):30, 140

               
               
               Conread position:207-632
               
               
               Cow position:chr5:4617604-4617189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:279
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):17, 31

               
               
               Conread position:208-632
               
               
               Cow position:chr5:30303134-30302711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 122

               
               
               Conread position:209-613
               
               
               Cow position:chr5:66972675-66972257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:291
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):89, 18

               
               
               Conread position:209-645
               
               
               Cow position:chr5:21617706-21617258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:297
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):28, 204

               
               
               Conread position:210-630
               
               
               Cow position:chr5:11229422-11229856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:293
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):14, 71

               
               
               Conread position:210-632
               
               
               Cow position:chr5:45845442-45845880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 128

               
               
               Conread position:211-386
               
               
               Cow position:chr5:54712820-54713000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:211-393
               
               
               Cow position:chr5:17105090-17104908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):92, 18

               
               
               Conread position:211-405
               
               
               Cow position:chr5:51012252-51012045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):9, 142

               
               
               Conread position:211-519
               
               
               Cow position:chr5:73166888-73167198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):20, 112

               
               
               Conread position:211-631
               
               
               Cow position:chr5:56028298-56028714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:212-412
               
               
               Cow position:chr5:29172237-29172027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):48, 147

               
               
               Conread position:212-426
               
               
               Cow position:chr5:57497184-57497399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):108, 15

               
               
               Conread position:212-539
               
               
               Cow position:chr5:43391271-43390941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):168, 27

               
               
               Conread position:212-582
               
               
               Cow position:chr5:18289366-18288995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 104

               
               
               Conread position:212-584
               
               
               Cow position:chr5:73167769-73168134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:258
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):59, 25

               
               
               Conread position:212-631
               
               
               Cow position:chr5:14903818-14904257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:301
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):27, 67

               
               
               Conread position:212-631
               
               
               Cow position:chr5:28945837-28946242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:280
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):196, 15

               
               
               Conread position:212-632
               
               
               Cow position:chr5:20128304-20127870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 153

               
               
               Conread position:212-632
               
               
               Cow position:chr5:28302512-28302924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:276
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):193, 17

               
               
               Conread position:213-621
               
               
               Cow position:chr5:50723294-50722873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 147

               
               
               Conread position:213-631
               
               
               Cow position:chr5:6528912-6528497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 56

               
               
               Conread position:213-632
               
               
               Cow position:chr5:62869816-62870221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:288
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):8, 55

               
               
               Conread position:214-371
               
               
               Cow position:chr5:56563994-56563834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):23, 139

               
               
               Conread position:214-637
               
               
               Cow position:chr5:3242249-3242662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:283
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):5, 119

               
               
               Conread position:214-645
               
               
               Cow position:chr5:5938578-5938127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:303
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):17, 157

               
               
               Conread position:214-650
               
               
               Cow position:chr5:71454389-71454797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:282
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:215-377
               
               
               Cow position:chr5:55943475-55943642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):104, 129

               
               
               Conread position:215-386
               
               
               Cow position:chr5:56643310-56643132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):75, 17

               
               
               Conread position:215-403
               
               
               Cow position:chr5:44196690-44196881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):106, 13

               
               
               Conread position:215-403
               
               
               Cow position:chr5:61049578-61049380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):21, 136

               
               
               Conread position:215-420
               
               
               Cow position:chr5:30247283-30247491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):139, 21

               
               
               Conread position:215-632
               
               
               Cow position:chr5:23140342-23140757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:287
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):18, 68

               
               
               Conread position:216-325
               
               
               Cow position:chr5:41757857-41757746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:91
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:216-393
               
               
               Cow position:chr5:34288012-34288195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:216-396
               
               
               Cow position:chr5:60207946-60207763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):105, 16

               
               
               Conread position:216-405
               
               
               Cow position:chr5:31648658-31648466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):19, 127

               
               
               Conread position:216-406
               
               
               Cow position:chr5:43465769-43465570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):102, 144

               
               
               Conread position:216-406
               
               
               Cow position:chr5:45405289-45405089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):40, 133

               
               
               Conread position:216-420
               
               
               Cow position:chr5:64060688-64060477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):109, 141

               
               
               Conread position:216-423
               
               
               Cow position:chr5:37090395-37090610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):106, 145

               
               
               Conread position:216-423
               
               
               Cow position:chr5:58487615-58487405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):93, 139

               
               
               Conread position:216-448
               
               
               Cow position:chr5:56549610-56549371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):100, 145

               
               
               Conread position:216-456
               
               
               Cow position:chr5:52853210-52852960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):15, 127

               
               
               Conread position:216-488
               
               
               Cow position:chr5:50101134-50101416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):19, 130

               
               
               Conread position:216-560
               
               
               Cow position:chr5:60016401-60016055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:224
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):100, 25

               
               
               Conread position:216-589
               
               
               Cow position:chr5:44446632-44447008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:254
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):17, 99

               
               
               Conread position:216-602
               
               
               Cow position:chr5:35246863-35247265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 138

               
               
               Conread position:216-618
               
               
               Cow position:chr5:56014964-56014564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:267
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):206, 101

               
               
               Conread position:216-629
               
               
               Cow position:chr5:36868982-36868564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:297
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):16, 138

               
               
               Conread position:216-630
               
               
               Cow position:chr5:16893537-16893958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:283
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):91, 27

               
               
               Conread position:216-631
               
               
               Cow position:chr5:14550340-14550769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 200

               
               
               Conread position:216-631
               
               
               Cow position:chr5:22242533-22242969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:299
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):86, 16

               
               
               Conread position:216-631
               
               
               Cow position:chr5:34441555-34441975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:284
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):18, 44

               
               
               Conread position:216-631
               
               
               Cow position:chr5:57591930-57591507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:286
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):15, 78

               
               
               Conread position:216-632
               
               
               Cow position:chr5:11426992-11427426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 49

               
               
               Conread position:216-632
               
               
               Cow position:chr5:12322570-12322985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:264
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):83, 16

               
               
               Conread position:216-632
               
               
               Cow position:chr5:17999252-17999679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 143

               
               
               Conread position:216-632
               
               
               Cow position:chr5:26467867-26467435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:275
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):105, 15

               
               
               Conread position:216-632
               
               
               Cow position:chr5:31469345-31469769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:294
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):16, 204

               
               
               Conread position:216-632
               
               
               Cow position:chr5:32153066-32153500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:286
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):15, 156

               
               
               Conread position:216-632
               
               
               Cow position:chr5:40889050-40889468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:287
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):12, 203

               
               
               Conread position:216-633
               
               
               Cow position:chr5:39937358-39936917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 34

               
               
               Conread position:216-633
               
               
               Cow position:chr5:42845355-42845786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 53

               
               
               Conread position:216-643
               
               
               Cow position:chr5:37941565-37941991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:305
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):91, 130

               
               
               Conread position:216-645
               
               
               Cow position:chr5:35208506-35208064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 136

               
               
               Conread position:216-645
               
               
               Cow position:chr5:57074095-57074532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:293
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):100, 48

               
               
               Conread position:217-403
               
               
               Cow position:chr5:65140539-65140344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):109, 14

               
               
               Conread position:217-405
               
               
               Cow position:chr5:46710824-46710628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):81, 143

               
               
               Conread position:217-405
               
               
               Cow position:chr5:46715724-46715528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):81, 143

               
               
               Conread position:217-406
               
               
               Cow position:chr5:57372045-57371847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):101, 144

               
               
               Conread position:217-413
               
               
               Cow position:chr5:46755369-46755167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):102, 26

               
               
               Conread position:217-420
               
               
               Cow position:chr5:57101286-57101493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):104, 20

               
               
               Conread position:217-429
               
               
               Cow position:chr5:19079482-19079275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):78, 14

               
               
               Conread position:217-438
               
               
               Cow position:chr5:17828237-17828470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):102, 13

               
               
               Conread position:217-449
               
               
               Cow position:chr5:6520248-6520009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):10, 118

               
               
               Conread position:217-584
               
               
               Cow position:chr5:50858177-50857801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:253
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):20, 11

               
               
               Conread position:217-627
               
               
               Cow position:chr5:12873991-12873565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:294
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):61, 11

               
               
               Conread position:217-629
               
               
               Cow position:chr5:21829104-21828683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 19

               
               
               Conread position:217-631
               
               
               Cow position:chr5:24995979-24996409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:286
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):18, 71

               
               
               Conread position:217-632
               
               
               Cow position:chr5:29828289-29827869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 125

               
               
               Conread position:217-632
               
               
               Cow position:chr5:44993798-44994222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:289
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):28, 142

               
               
               Conread position:217-632
               
               
               Cow position:chr5:63647238-63647659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:300
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):81, 12

               
               
               Conread position:217-632
               
               
               Cow position:chr5:72903000-72903412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 19

               
               
               Conread position:218-326
               
               
               Cow position:chr5:17026435-17026327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:88
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:218-390
               
               
               Cow position:chr5:57447425-57447605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):103, 18

               
               
               Conread position:218-406
               
               
               Cow position:chr5:62812067-62811869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):100, 143

               
               
               Conread position:218-417
               
               
               Cow position:chr5:12562520-12562728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):95, 123

               
               
               Conread position:218-417
               
               
               Cow position:chr5:71445631-71445422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):101, 14

               
               
               Conread position:218-420
               
               
               Cow position:chr5:57399012-57399221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):101, 12

               
               
               Conread position:218-420
               
               
               Cow position:chr5:61580519-61580311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):89, 18

               
               
               Conread position:218-524
               
               
               Cow position:chr5:57755795-57756107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:231
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):103, 14

               
               
               Conread position:218-537
               
               
               Cow position:chr5:61914811-61914481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):101, 135

               
               
               Conread position:218-552
               
               
               Cow position:chr5:36038763-36039108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:221
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):17, 63

               
               
               Conread position:218-561
               
               
               Cow position:chr5:70678404-70678744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:230
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):19, 141

               
               
               Conread position:218-562
               
               
               Cow position:chr5:12902159-12901801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 141

               
               
               Conread position:218-577
               
               
               Cow position:chr5:41226762-41227113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:250
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):18, 144

               
               
               Conread position:218-582
               
               
               Cow position:chr5:57767748-57768117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:264
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):108, 44

               
               
               Conread position:218-609
               
               
               Cow position:chr5:29097606-29097199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:263
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):13, 85

               
               
               Conread position:218-620
               
               
               Cow position:chr5:41452451-41452839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:263
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):253, 69

               
               
               Conread position:218-631
               
               
               Cow position:chr5:11667944-11668362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 131

               
               
               Conread position:218-631
               
               
               Cow position:chr5:45225581-45226007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 33

               
               
               Conread position:218-632
               
               
               Cow position:chr5:32975321-32975736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:296
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):101, 13

               
               
               Conread position:218-632
               
               
               Cow position:chr5:47316737-47317154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 14

               
               
               Conread position:219-405
               
               
               Cow position:chr5:15991406-15991593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):95, 116

               
               
               Conread position:219-455
               
               
               Cow position:chr5:54751049-54750807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):28, 13

               
               
               Conread position:219-518
               
               
               Cow position:chr5:20843159-20843468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):72, 65

               
               
               Conread position:219-539
               
               
               Cow position:chr5:50576005-50575694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):184, 12

               
               
               Conread position:219-579
               
               
               Cow position:chr5:33560499-33560865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 123

               
               
               Conread position:219-601
               
               
               Cow position:chr5:7057158-7057554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:278
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):100, 143

               
               
               Conread position:219-621
               
               
               Cow position:chr5:54048111-54048519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:275
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):96, 141

               
               
               Conread position:219-628
               
               
               Cow position:chr5:43858179-43858608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 132

               
               
               Conread position:219-632
               
               
               Cow position:chr5:1247502-1247092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:290
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):99, 47

               
               
               Conread position:219-632
               
               
               Cow position:chr5:8023976-8024377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:280
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):148, 50

               
               
               Conread position:219-632
               
               
               Cow position:chr5:30276924-30276507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:283
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):48, 10

               
               
               Conread position:219-632
               
               
               Cow position:chr5:54875453-54875865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:282
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):12, 239

               
               
               Conread position:219-632
               
               
               Cow position:chr5:60209910-60210324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:278
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):67, 22

               
               
               Conread position:220-420
               
               
               Cow position:chr5:57086824-57087032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):101, 138

               
               
               Conread position:220-445
               
               
               Cow position:chr5:26548905-26549138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:220-541
               
               
               Cow position:chr5:25366337-25365998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:226
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):97, 39

               
               
               Conread position:220-632
               
               
               Cow position:chr5:15479365-15478929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:308
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):77, 11

               
               
               Conread position:220-632
               
               
               Cow position:chr5:30845342-30844926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 26

               
               
               Conread position:220-632
               
               
               Cow position:chr5:38833352-38832935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:273
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):101, 43

               
               
               Conread position:221-405
               
               
               Cow position:chr5:56327488-56327675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):16, 43

               
               
               Conread position:221-537
               
               
               Cow position:chr5:57526688-57527007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:236
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):18, 141

               
               
               Conread position:221-551
               
               
               Cow position:chr5:35228907-35229232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):106, 40

               
               
               Conread position:222-414
               
               
               Cow position:chr5:63172812-63173008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):91, 131

               
               
               Conread position:222-632
               
               
               Cow position:chr5:18574417-18573986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 10

               
               
               Conread position:222-632
               
               
               Cow position:chr5:55756177-55756624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 129

               
               
               Conread position:223-632
               
               
               Cow position:chr5:56524397-56523989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:273
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):156, 83

               
               
               Conread position:224-624
               
               
               Cow position:chr5:47757006-47756592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:283
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):97, 134

               
               
               Conread position:224-632
               
               
               Cow position:chr5:7044473-7044895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 8

               
               
               Conread position:224-632
               
               
               Cow position:chr5:74643451-74643846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:263
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):83, 8

               
               
               Conread position:224-645
               
               
               Cow position:chr5:47870820-47871248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 58

               
               
               Conread position:224-645
               
               
               Cow position:chr5:64175897-64176318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:283
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):98, 8

               
               
               Conread position:225-631
               
               
               Cow position:chr5:5856093-5855696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:286
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):84, 123

               
               
               Conread position:225-636
               
               
               Cow position:chr5:34976606-34977029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:289
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):115, 244

               
               
               Conread position:227-414
               
               
               Cow position:chr5:22186637-22186454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):181, 58

               
               
               Conread position:227-604
               
               
               Cow position:chr5:42050775-42050391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:261
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):80, 48

               
               
               Conread position:227-618
               
               
               Cow position:chr5:55956143-55955735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 120

               
               
               Conread position:227-631
               
               
               Cow position:chr5:38853583-38853176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:276
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):9, 135

               
               
               Conread position:227-632
               
               
               Cow position:chr5:17028307-17027910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:272
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):181, 72

               
               
               Conread position:227-632
               
               
               Cow position:chr5:22738328-22737921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:267
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):90, 131

               
               
               Conread position:227-632
               
               
               Cow position:chr5:27419517-27419905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:277
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):187, 72

               
               
               Conread position:228-387
               
               
               Cow position:chr5:22957633-22957474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):85, 94

               
               
               Conread position:228-396
               
               
               Cow position:chr5:37253653-37253484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:228-449
               
               
               Cow position:chr5:57062297-57062531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:170
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):9, 102

               
               
               Conread position:228-452
               
               
               Cow position:chr5:48867240-48867469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:160
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):92, 112

               
               
               Conread position:228-597
               
               
               Cow position:chr5:35459065-35459444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:256
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):8, 88

               
               
               Conread position:228-610
               
               
               Cow position:chr5:55068930-55068543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:256
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):65, 43

               
               
               Conread position:228-617
               
               
               Cow position:chr5:30092398-30092799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:274
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):74, 37

               
               
               Conread position:228-617
               
               
               Cow position:chr5:41009780-41010166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:263
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):120, 99

               
               
               Conread position:228-627
               
               
               Cow position:chr5:29681324-29680899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:283
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):106, 23

               
               
               Conread position:228-628
               
               
               Cow position:chr5:26132864-26133254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:269
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):8, 134

               
               
               Conread position:228-629
               
               
               Cow position:chr5:2309328-2309745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 126

               
               
               Conread position:228-632
               
               
               Cow position:chr5:34505693-34506110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:274
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):8, 136

               
               
               Conread position:228-632
               
               
               Cow position:chr5:44847796-44848201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:282
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):7, 115

               
               
               Conread position:228-632
               
               
               Cow position:chr5:45409556-45409141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:279
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):9, 136

               
               
               Conread position:228-632
               
               
               Cow position:chr5:64139793-64139378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:268
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):30, 55

               
               
               Conread position:228-632
               
               
               Cow position:chr5:68329778-68330167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:270
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):87, 47

               
               
               Conread position:229-377
               
               
               Cow position:chr5:25450173-25450028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:229-539
               
               
               Cow position:chr5:71015656-71015971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:224
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):92, 66

               
               
               Conread position:229-632
               
               
               Cow position:chr5:50942929-50943338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:280
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):9, 215

               
               
               Conread position:232-326
               
               
               Cow position:chr5:45854727-45854633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:95
               
               
               Alignm identity:82
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:232-327
               
               
               Cow position:chr5:56624288-56624383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:96
               
               
               Alignm identity:81
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:232-406
               
               
               Cow position:chr5:29829661-29829844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):84, 128

               
               
               Conread position:232-412
               
               
               Cow position:chr5:24915299-24915487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):77, 127

               
               
               Conread position:232-417
               
               
               Cow position:chr5:7675932-7676123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):89, 113

               
               
               Conread position:232-420
               
               
               Cow position:chr5:22102779-22102591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):77, 32

               
               
               Conread position:232-431
               
               
               Cow position:chr5:30562154-30561951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):77, 112

               
               
               Conread position:232-438
               
               
               Cow position:chr5:5016649-5016438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):15, 84

               
               
               Conread position:232-452
               
               
               Cow position:chr5:60514799-60515033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):28, 129

               
               
               Conread position:232-526
               
               
               Cow position:chr5:43604365-43604067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):70, 112

               
               
               Conread position:232-527
               
               
               Cow position:chr5:19752527-19752226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):67, 115

               
               
               Conread position:232-540
               
               
               Cow position:chr5:33834266-33833952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):87, 114

               
               
               Conread position:232-579
               
               
               Cow position:chr5:64140764-64140399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:250
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):86, 116

               
               
               Conread position:232-618
               
               
               Cow position:chr5:30178276-30178681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:268
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):64, 58

               
               
               Conread position:232-621
               
               
               Cow position:chr5:3549579-3549951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:248
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):206, 60

               
               
               Conread position:232-624
               
               
               Cow position:chr5:31216827-31217235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:276
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):84, 125

               
               
               Conread position:232-629
               
               
               Cow position:chr5:25899669-25900051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:263
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):176, 56

               
               
               Conread position:232-631
               
               
               Cow position:chr5:21525386-21524981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:275
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):94, 25

               
               
               Conread position:232-631
               
               
               Cow position:chr5:34625174-34624785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:286
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):159, 74

               
               
               Conread position:232-631
               
               
               Cow position:chr5:52164947-52165366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:293
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):66, 123

               
               
               Conread position:232-632
               
               
               Cow position:chr5:5257061-5257481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:287
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):65, 87

               
               
               Conread position:232-632
               
               
               Cow position:chr5:9893899-9894310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:270
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):83, 43

               
               
               Conread position:232-632
               
               
               Cow position:chr5:16025257-16025645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:273
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):351, 66

               
               
               Conread position:232-632
               
               
               Cow position:chr5:16937808-16938192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:274
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):80, 111

               
               
               Conread position:232-632
               
               
               Cow position:chr5:18899182-18898799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:281
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):102, 19

               
               
               Conread position:232-632
               
               
               Cow position:chr5:26262459-26262858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 92

               
               
               Conread position:232-632
               
               
               Cow position:chr5:27102587-27102972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:254
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):182, 66

               
               
               Conread position:232-632
               
               
               Cow position:chr5:28224668-28224269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:279
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):176, 77

               
               
               Conread position:232-632
               
               
               Cow position:chr5:29756543-29756153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:244
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):182, 67

               
               
               Conread position:232-632
               
               
               Cow position:chr5:34562235-34561824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:268
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):88, 52

               
               
               Conread position:232-632
               
               
               Cow position:chr5:35145561-35145168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:286
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):76, 149

               
               
               Conread position:232-632
               
               
               Cow position:chr5:35685159-35684750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:270
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):58, 33

               
               
               Conread position:232-632
               
               
               Cow position:chr5:35969766-35969358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 125

               
               
               Conread position:232-632
               
               
               Cow position:chr5:40927788-40928158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:268
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):229, 72

               
               
               Conread position:232-632
               
               
               Cow position:chr5:47602034-47601632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:273
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):89, 55

               
               
               Conread position:232-632
               
               
               Cow position:chr5:49685041-49685465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:279
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):29, 235

               
               
               Conread position:232-632
               
               
               Cow position:chr5:53842517-53842104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:277
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):37, 109

               
               
               Conread position:232-632
               
               
               Cow position:chr5:57934894-57935298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):182, 71

               
               
               Conread position:232-632
               
               
               Cow position:chr5:61600633-61600228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:269
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):98, 150

               
               
               Conread position:232-632
               
               
               Cow position:chr5:65941024-65941438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 246

               
               
               Conread position:232-633
               
               
               Cow position:chr5:39442503-39442108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:270
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):190, 61

               
               
               Conread position:232-635
               
               
               Cow position:chr5:39695858-39695462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:276
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):182, 67

               
               
               Conread position:232-635
               
               
               Cow position:chr5:46512542-46512954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:277
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):80, 34

               
               
               Conread position:232-645
               
               
               Cow position:chr5:1104649-1105068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:288
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):21, 131

               
               
               Conread position:232-645
               
               
               Cow position:chr5:32394828-32394403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:289
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):63, 128

               
               
               Conread position:232-646
               
               
               Cow position:chr5:40152713-40152274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:290
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):96, 131

               
               
               Conread position:234-438
               
               
               Cow position:chr5:53935330-53935538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):74, 107

               
               
               Conread position:234-597
               
               
               Cow position:chr5:12760896-12761265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:263
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):92, 178

               
               
               Conread position:234-629
               
               
               Cow position:chr5:14314740-14314340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:272
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):174, 59

               
               
               Conread position:234-630
               
               
               Cow position:chr5:30253964-30253559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 59

               
               
               Conread position:234-632
               
               
               Cow position:chr5:39447301-39447715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 254

               
               
               Conread position:234-632
               
               
               Cow position:chr5:40109708-40109317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:266
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):180, 85

               
               
               Conread position:234-632
               
               
               Cow position:chr5:53835945-53835530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:282
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):69, 142

               
               
               Conread position:234-632
               
               
               Cow position:chr5:66339297-66338899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:264
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):32, 92

               
               
               Conread position:234-635
               
               
               Cow position:chr5:56467894-56467516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:272
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):264, 37

               
               
               Conread position:235-612
               
               
               Cow position:chr5:11539829-11540208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:266
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):84, 120

               
               
               Conread position:235-631
               
               
               Cow position:chr5:62172621-62172235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:270
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):179, 34

               
               
               Conread position:235-632
               
               
               Cow position:chr5:4280667-4280279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 79

               
               
               Conread position:236-393
               
               
               Cow position:chr5:60523949-60523790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:236-405
               
               
               Cow position:chr5:29256486-29256661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:236-420
               
               
               Cow position:chr5:4267882-4267701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):77, 53

               
               
               Conread position:236-420
               
               
               Cow position:chr5:69383473-69383286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):84, 115

               
               
               Conread position:236-421
               
               
               Cow position:chr5:50578942-50579138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):80, 124

               
               
               Conread position:236-536
               
               
               Cow position:chr5:41885136-41884848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:214
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):85, 110

               
               
               Conread position:236-611
               
               
               Cow position:chr5:16214903-16214524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:248
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):62, 106

               
               
               Conread position:236-632
               
               
               Cow position:chr5:30487449-30487060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:272
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):121, 137

               
               
               Conread position:236-632
               
               
               Cow position:chr5:55089344-55088955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:252
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):107, 67

               
               
               Conread position:236-632
               
               
               Cow position:chr5:66257856-66257458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:258
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):57, 218

               
               
               Conread position:237-420
               
               
               Cow position:chr5:44734506-44734694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):84, 109

               
               
               Conread position:237-630
               
               
               Cow position:chr5:68605084-68604676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:268
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):73, 134

               
               
               Conread position:237-631
               
               
               Cow position:chr5:43922950-43923333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:273
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):77, 53

               
               
               Conread position:238-560
               
               
               Cow position:chr5:71845706-71846036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):71, 22

               
               
               Conread position:239-616
               
               
               Cow position:chr5:57328016-57327624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:275
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):75, 60

               
               
               Conread position:242-628
               
               
               Cow position:chr5:58144388-58144784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:266
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):69, 19

               
               
               Conread position:242-628
               
               
               Cow position:chr5:67932250-67932642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 179

               
               
               Conread position:242-632
               
               
               Cow position:chr5:41165298-41164904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 231

               
               
               Conread position:242-632
               
               
               Cow position:chr5:55177096-55176702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:272
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):79, 33

               
               
               Conread position:242-632
               
               
               Cow position:chr5:56071074-56070668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:266
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):79, 169

               
               
               Conread position:242-635
               
               
               Cow position:chr5:47696244-47696641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:282
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):92, 56

               
               
               Conread position:243-420
               
               
               Cow position:chr5:16668908-16668728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):60, 101

               
               
               Conread position:243-624
               
               
               Cow position:chr5:65776162-65776562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:286
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):50, 42

               
               
               Conread position:243-625
               
               
               Cow position:chr5:37065314-37064916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:256
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):76, 117

               
               
               Conread position:243-631
               
               
               Cow position:chr5:17062864-17063277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:280
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):85, 108

               
               
               Conread position:244-670
               
               
               Cow position:chr5:69731700-69731297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:296
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):8, 22

               
               
               Conread position:245-633
               
               
               Cow position:chr5:26097503-26097110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 102

               
               
               Conread position:246-412
               
               
               Cow position:chr5:51233812-51233979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):63, 17

               
               
               Conread position:246-421
               
               
               Cow position:chr5:38040356-38040534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):63, 98

               
               
               Conread position:246-436
               
               
               Cow position:chr5:36143190-36142998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):69, 20

               
               
               Conread position:246-559
               
               
               Cow position:chr5:53947111-53946782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:227
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):74, 113

               
               
               Conread position:246-608
               
               
               Cow position:chr5:45397777-45397418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:241
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):75, 20

               
               
               Conread position:246-614
               
               
               Cow position:chr5:30628941-30629324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:262
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):63, 100

               
               
               Conread position:246-622
               
               
               Cow position:chr5:50600258-50599879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:249
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):72, 165

               
               
               Conread position:246-623
               
               
               Cow position:chr5:50482646-50483037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:252
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):70, 117

               
               
               Conread position:246-630
               
               
               Cow position:chr5:37646287-37645891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:276
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):47, 96

               
               
               Conread position:246-632
               
               
               Cow position:chr5:7723856-7723486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:264
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):162, 36

               
               
               Conread position:246-632
               
               
               Cow position:chr5:20779187-20779566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:272
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):61, 101

               
               
               Conread position:246-632
               
               
               Cow position:chr5:29352920-29353314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 89

               
               
               Conread position:246-632
               
               
               Cow position:chr5:33414196-33414592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:275
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):80, 114

               
               
               Conread position:246-632
               
               
               Cow position:chr5:45706248-45705863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:262
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):81, 107

               
               
               Conread position:246-659
               
               
               Cow position:chr5:4506751-4507172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:277
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):79, 115

               
               
               Conread position:246-661
               
               
               Cow position:chr5:34050320-34049897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:284
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):168, 80

               
               
               Conread position:248-623
               
               
               Cow position:chr5:62639095-62638730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:257
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):166, 51

               
               
               Conread position:248-627
               
               
               Cow position:chr5:33080599-33080968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:265
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):166, 51

               
               
               Conread position:248-629
               
               
               Cow position:chr5:64523654-64524062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:275
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):48, 97

               
               
               Conread position:248-631
               
               
               Cow position:chr5:26377470-26377850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 68

               
               
               Conread position:248-632
               
               
               Cow position:chr5:15721878-15722239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:254
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):88, 18

               
               
               Conread position:248-636
               
               
               Cow position:chr5:6286238-6286615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:262
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):11, 60

               
               
               Conread position:249-422
               
               
               Cow position:chr5:25598038-25597858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):64, 96

               
               
               Conread position:249-632
               
               
               Cow position:chr5:69461541-69461150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:269
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):65, 14

               
               
               Conread position:249-633
               
               
               Cow position:chr5:24349299-24348926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 15

               
               
               Conread position:251-626
               
               
               Cow position:chr5:41713495-41713131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:259
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):110, 41

               
               
               Conread position:251-632
               
               
               Cow position:chr5:26990587-26990209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:255
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):198, 90

               
               
               Conread position:251-632
               
               
               Cow position:chr5:64137465-64137067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:268
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):73, 112

               
               
               Conread position:252-419
               
               
               Cow position:chr5:51125812-51125979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):155, 53

               
               
               Conread position:252-568
               
               
               Cow position:chr5:57419590-57419913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):63, 92

               
               
               Conread position:257-631
               
               
               Cow position:chr5:47703924-47704317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:263
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):71, 169

               
               
               Conread position:259-631
               
               
               Cow position:chr5:54350172-54350544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:264
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):148, 55

               
               
               Conread position:260-632
               
               
               Cow position:chr5:36855393-36855028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:259
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):148, 33

               
               
               Conread position:261-632
               
               
               Cow position:chr5:68872392-68872008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:256
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):60, 102

               
               
               Conread position:271-631
               
               
               Cow position:chr5:22643057-22643401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:242
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):286, 32

               
               
               Conread position:271-631
               
               
               Cow position:chr5:71495009-71494633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 79

               
               
               Conread position:271-632
               
               
               Cow position:chr5:72564936-72564577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):137, 28

               
               
               Conread position:276-632
               
               
               Cow position:chr5:47547552-47547902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):138, 73

               
               
               Conread position:281-632
               
               
               Cow position:chr5:8820844-8821196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:236
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):108, 39

               
               
               Conread position:281-632
               
               
               Cow position:chr5:42777926-42777580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:242
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):45, 77

               
               
               Conread position:286-631
               
               
               Cow position:chr5:19813056-19813397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):12, 36

               
               
               Conread position:287-632
               
               
               Cow position:chr5:37646377-37646735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:237
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):34, 75

               
               
               Conread position:288-632
               
               
               Cow position:chr5:65886848-65887199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:228
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):120, 61

               
               
               Conread position:295-630
               
               
               Cow position:chr5:20783776-20783442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:219
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):78, 22

               
               
               Conread position:296-580
               
               
               Cow position:chr5:45273348-45273633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:195
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):111, 37

               
               
               Conread position:298-580
               
               
               Cow position:chr5:54767757-54768042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):124, 43

               
               
               Conread position:298-628
               
               
               Cow position:chr5:4221129-4220800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):154, 23

               
               
               Conread position:298-632
               
               
               Cow position:chr5:4031834-4032173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):75, 43

               
               
               Conread position:298-632
               
               
               Cow position:chr5:4709998-4710327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):22, 95

               
               
               Conread position:298-633
               
               
               Cow position:chr5:21039831-21040159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:226
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):200, 43

               
               
               Conread position:299-567
               
               
               Cow position:chr5:26476861-26477131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):17, 48

               
               
               Conread position:299-615
               
               
               Cow position:chr5:30949762-30950087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:226
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):13, 38

               
               
               Conread position:299-620
               
               
               Cow position:chr5:59115532-59115208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:218
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):108, 35

               
               
               Conread position:299-632
               
               
               Cow position:chr5:4219007-4218693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):144, 14

               
               
               Conread position:299-632
               
               
               Cow position:chr5:23168675-23169003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):109, 36

               
               
               Conread position:299-632
               
               
               Cow position:chr5:60715217-60715539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:231
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):109, 42

               
               
               Conread position:299-660
               
               
               Cow position:chr5:57575922-57575554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:241
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):87, 15

               
               
               Conread position:300-645
               
               
               Cow position:chr5:45804208-45803863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):112, 27

               
               
               Conread position:301-624
               
               
               Cow position:chr5:51935338-51935006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):107, 19

               
               
               Conread position:301-632
               
               
               Cow position:chr5:6045447-6045103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:302-625
               
               
               Cow position:chr5:7552266-7552596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):12, 248

               
               
               Conread position:302-632
               
               
               Cow position:chr5:56518071-56518394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:227
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):12, 107

               
               
               Conread position:303-632
               
               
               Cow position:chr5:46322656-46322996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):134, 38

               
               
               Conread position:304-632
               
               
               Cow position:chr5:64758623-64758948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:236
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):110, 22

               
               
               Conread position:305-612
               
               
               Cow position:chr5:14629659-14629980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:209
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:309-645
               
               
               Cow position:chr5:50821926-50821591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):11, 162

               
               
               Conread position:310-632
               
               
               Cow position:chr5:48009718-48010031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):184, 112

               
               
               Conread position:316-629
               
               
               Cow position:chr5:28927459-28927774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):181, 69

               
               
               Conread position:317-554
               
               
               Cow position:chr5:41294212-41293974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):105, 10

               
               
               Conread position:317-632
               
               
               Cow position:chr5:54311467-54311149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:230
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):82, 10

               
               
               Conread position:318-632
               
               
               Cow position:chr5:63964033-63964357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):55, 23

               
               
               Conread position:319-561
               
               
               Cow position:chr5:13717439-13717684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):95, 22

               
               
               Conread position:319-596
               
               
               Cow position:chr5:16206023-16206308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):55, 80

               
               
               Conread position:319-631
               
               
               Cow position:chr5:34301048-34300743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):49, 96

               
               
               Conread position:319-632
               
               
               Cow position:chr5:37814758-37814439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):86, 217

               
               
               Conread position:319-632
               
               
               Cow position:chr5:43929604-43929918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):89, 135

               
               
               Conread position:319-632
               
               
               Cow position:chr5:50215432-50215743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:223
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):7, 17

               
               
               Conread position:319-632
               
               
               Cow position:chr5:63992040-63992347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):89, 151

               
               
               Conread position:320-560
               
               
               Cow position:chr5:58446938-58446691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):88, 130

               
               
               Conread position:320-632
               
               
               Cow position:chr5:65588830-65588523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):94, 87

               
               
               Conread position:321-632
               
               
               Cow position:chr5:15598108-15598418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:221
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):29, 25

               
               
               Conread position:321-632
               
               
               Cow position:chr5:42744909-42744609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):101, 20

               
               
               Conread position:321-644
               
               
               Cow position:chr5:47323591-47323254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):87, 20

               
               
               Conread position:323-630
               
               
               Cow position:chr5:63987319-63987630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):61, 18

               
               
               Conread position:323-631
               
               
               Cow position:chr5:29771655-29771331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):84, 18

               
               
               Conread position:323-631
               
               
               Cow position:chr5:37808536-37808848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):85, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr5:9089901-9090208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:232
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):91, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr5:28230291-28229973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:215
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):83, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr5:52000345-52000034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:215
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):175, 23

               
               
               Conread position:323-632
               
               
               Cow position:chr5:58856229-58855919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr5:62142803-62142486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:221
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):85, 18

               
               
               Conread position:323-633
               
               
               Cow position:chr5:26094039-26094355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:222
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):76, 18

               
               
               Conread position:323-633
               
               
               Cow position:chr5:59325715-59326014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:216
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):80, 18

               
               
               Conread position:323-635
               
               
               Cow position:chr5:43992451-43992135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):83, 18

               
               
               Conread position:323-645
               
               
               Cow position:chr5:458615-458284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):85, 18

               
               
               Conread position:324-632
               
               
               Cow position:chr5:50533261-50533567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):22, 26

               
               
               Conread position:325-630
               
               
               Cow position:chr5:34463455-34463768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:220
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):78, 16

               
               
               Conread position:325-632
               
               
               Cow position:chr5:34887070-34887383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):82, 28

               
               
               Conread position:325-632
               
               
               Cow position:chr5:57737224-57736930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):89, 16

               
               
               Conread position:325-632
               
               
               Cow position:chr5:74858700-74858389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):75, 16

               
               
               Conread position:326-632
               
               
               Cow position:chr5:65601580-65601276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):88, 20

               
               
               Conread position:327-582
               
               
               Cow position:chr5:32672944-32673196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):76, 14

               
               
               Conread position:329-624
               
               
               Cow position:chr5:37189976-37190275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:206
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):79, 22

               
               
               Conread position:333-632
               
               
               Cow position:chr5:52644963-52645260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):73, 8

               
               
               Conread position:334-593
               
               
               Cow position:chr5:65883656-65883921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):12, 7

               
               
               Conread position:334-604
               
               
               Cow position:chr5:67540085-67540360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):71, 7

               
               
               Conread position:334-630
               
               
               Cow position:chr5:55929060-55928760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):71, 7

               
               
               Conread position:335-629
               
               
               Cow position:chr5:58793491-58793796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):49, 120

               
               
               Conread position:336-632
               
               
               Cow position:chr5:32696708-32696997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):72, 32

               
               
               Conread position:346-632
               
               
               Cow position:chr5:43737858-43738136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):68, 63

               
               
               Conread position:351-617
               
               
               Cow position:chr5:12866728-12866998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):84, 34

               
               
               Conread position:351-631
               
               
               Cow position:chr5:61840288-61840003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):63, 56

               
               
               Conread position:351-633
               
               
               Cow position:chr5:359839-360132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):57, 90

               
               
               Conread position:356-627
               
               
               Cow position:chr5:31481243-31480975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):46, 100

               
               
               Conread position:356-632
               
               
               Cow position:chr5:740845-741131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):59, 28

               
               
               Conread position:356-632
               
               
               Cow position:chr5:16509201-16508911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):49, 278

               
               
               Conread position:356-632
               
               
               Cow position:chr5:56820169-56820444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:203
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):58, 39

               
               
               Conread position:356-645
               
               
               Cow position:chr5:40039671-40039968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:209
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):28, 106

               
               
               Conread position:357-632
               
               
               Cow position:chr5:34528641-34528377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:198
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):205, 94

               
               
               Conread position:360-632
               
               
               Cow position:chr5:34638973-34638701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:180
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):62, 9

               
               
               Conread position:361-617
               
               
               Cow position:chr5:56317379-56317125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):55, 31

               
               
               Conread position:361-631
               
               
               Cow position:chr5:29213028-29212765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):133, 30

               
               
               Conread position:361-632
               
               
               Cow position:chr5:9390643-9390351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:198
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):48, 187

               
               
               Conread position:361-633
               
               
               Cow position:chr5:46122263-46122536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):45, 74

               
               
               Conread position:362-623
               
               
               Cow position:chr5:69520981-69520715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):5, 101

               
               
               Conread position:363-632
               
               
               Cow position:chr5:75436798-75437081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):44, 96

               
               
               Conread position:366-632
               
               
               Cow position:chr5:39094635-39094369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:185
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):42, 59

               
               
               Conread position:366-650
               
               
               Cow position:chr5:41951011-41951287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):48, 41

               
               
               Conread position:371-632
               
               
               Cow position:chr5:32140628-32140891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):44, 36

               
               
               Conread position:373-628
               
               
               Cow position:chr5:13691489-13691755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):35, 100

               
               
               Conread position:373-632
               
               
               Cow position:chr5:28926102-28926372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):32, 102

               
               
               Conread position:375-645
               
               
               Cow position:chr5:54713656-54713934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:192
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):28, 19

               
               
               Conread position:378-631
               
               
               Cow position:chr5:49361923-49362175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):160, 76

               
               
               Conread position:378-645
               
               
               Cow position:chr5:34885090-34885353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):42, 29

               
               
               Conread position:379-632
               
               
               Cow position:chr5:6670121-6670382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):29, 88

               
               
               Conread position:381-631
               
               
               Cow position:chr5:2500109-2500372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):33, 26

               
               
               Conread position:382-632
               
               
               Cow position:chr5:64823245-64823497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):13, 32

               
               
               Conread position:388-632
               
               
               Cow position:chr5:54404827-54405080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):22, 71

               
               
               Conread position:389-632
               
               
               Cow position:chr5:41522745-41522980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):45, 14

               
               
               Conread position:392-628
               
               
               Cow position:chr5:34168022-34167780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):15, 49

               
               
               Conread position:394-633
               
               
               Cow position:chr5:3668955-3668713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):20, 13

               
               
               Conread position:395-631
               
               
               Cow position:chr5:43474902-43474664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):54, 12

               
               
               Conread position:399-632
               
               
               Cow position:chr5:1766297-1766528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):9, 53

               
               
               Conread position:400-631
               
               
               Cow position:chr5:56134916-56135152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):26, 14

               
               
               Conread position:402-635
               
               
               Cow position:chr5:21964334-21964101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):87, 49

               
               
               Conread position:405-632
               
               
               Cow position:chr5:23856117-23856346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):17, 5

               
               
               Conread position:407-631
               
               
               Cow position:chr5:44583083-44583302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):26, 161

               
               
               Conread position:410-630
               
               
               Cow position:chr5:3280835-3281054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):13, 27

               
               
               Conread position:410-632
               
               
               Cow position:chr5:64844082-64844302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):13, 23

               
               
               Conread position:411-629
               
               
               Cow position:chr5:8994529-8994747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):87, 35

               
               
               Conread position:411-629
               
               
               Cow position:chr5:24485398-24485607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):61, 42

               
               
               Conread position:411-632
               
               
               Cow position:chr5:17644618-17644840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):85, 40

               
               
               Conread position:411-645
               
               
               Cow position:chr5:26790419-26790649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):85, 37

               
               
               Conread position:412-632
               
               
               Cow position:chr5:7140071-7140289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):11, 21

               
               
               Conread position:412-645
               
               
               Cow position:chr5:12709924-12709688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):88, 39

               
               
               Conread position:413-621
               
               
               Cow position:chr5:32956060-32956269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):87, 33

               
               
               Conread position:414-632
               
               
               Cow position:chr5:16185121-16184905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):84, 49

               
               
               Conread position:415-632
               
               
               Cow position:chr5:31434296-31434081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):37, 14

               
               
               Conread position:420-629
               
               
               Cow position:chr5:62826725-62826935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):43, 31

               
               
               Conread position:429-633
               
               
               Cow position:chr5:18090742-18090542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):69, 11

               
               
               Conread position:431-632
               
               
               Cow position:chr5:51490740-51490938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):69, 17

               
               
               Conread position:440-632
               
               
               Cow position:chr5:14415782-14415588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:149
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):103, 12

               
               
               Conread position:443-632
               
               
               Cow position:chr5:14420336-14420529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):75, 38

               
               
               Conread position:444-632
               
               
               Cow position:chr5:56433810-56433614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:458-608
               
               
               Cow position:chr5:71579167-71579013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:458-627
               
               
               Cow position:chr5:42748149-42747976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):40, 111

               
               
               Conread position:458-631
               
               
               Cow position:chr5:32963639-32963813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):40, 85

               
               
               Conread position:458-632
               
               
               Cow position:chr5:35235716-35235893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):13, 67

               
               
               Conread position:458-632
               
               
               Cow position:chr5:55821366-55821182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:458-632
               
               
               Cow position:chr5:57271273-57271449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):40, 128

               
               
               Conread position:458-633
               
               
               Cow position:chr5:45037013-45036836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):40, 73

               
               
               Conread position:458-635
               
               
               Cow position:chr5:65932936-65933118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):40, 173

               
               
               Conread position:463-632
               
               
               Cow position:chr5:3492182-3492017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):35, 105

               
               
               Conread position:469-632
               
               
               Cow position:chr5:1678376-1678215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):20, 106

               
               
               Conread position:470-590
               
               
               Cow position:chr5:7921420-7921542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:95
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:470-629
               
               
               Cow position:chr5:6575611-6575769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):66, 15

               
               
               Conread position:470-631
               
               
               Cow position:chr5:30638882-30639036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):73, 10

               
               
               Conread position:470-631
               
               
               Cow position:chr5:71505104-71504942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:470-632
               
               
               Cow position:chr5:27403256-27403428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:470-632
               
               
               Cow position:chr5:58005231-58005059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):26, 54

               
               
               Conread position:470-632
               
               
               Cow position:chr5:59443272-59443436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):114, 28

               
               
               Conread position:470-632
               
               
               Cow position:chr5:63388774-63388610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):19, 57

               
               
               Conread position:475-630
               
               
               Cow position:chr5:32378828-32378686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:478-632
               
               
               Cow position:chr5:75828766-75828920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):114, 98

               
               
               Conread position:479-622
               
               
               Cow position:chr5:45025947-45026092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:481-632
               
               
               Cow position:chr5:37366870-37366713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:482-632
               
               
               Cow position:chr5:33661823-33661670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):57, 36

               
               
               Conread position:486-645
               
               
               Cow position:chr5:35449217-35449056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:493-622
               
               
               Cow position:chr5:3627197-3627330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:104
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):42, 126

               
               
               Conread position:493-631
               
               
               Cow position:chr5:2851273-2851130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):46, 36

               
               
               Conread position:494-632
               
               
               Cow position:chr5:55942442-55942582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:110
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:495-608
               
               
               Cow position:chr5:46425898-46426011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:92
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:495-624
               
               
               Cow position:chr5:1950110-1950238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:100
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:495-624
               
               
               Cow position:chr5:50870499-50870365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:105
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:495-625
               
               
               Cow position:chr5:28957657-28957794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:495-629
               
               
               Cow position:chr5:66280838-66280973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:495-629
               
               
               Cow position:chr5:66281365-66281230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:107
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:495-630
               
               
               Cow position:chr5:5111122-5111259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):91, 60

               
               
               Conread position:495-632
               
               
               Cow position:chr5:9859761-9859903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):78, 20

               
               
               Conread position:495-632
               
               
               Cow position:chr5:20407714-20407851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr5:27690106-27690243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):89, 23

               
               
               Conread position:495-632
               
               
               Cow position:chr5:43395187-43395322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):41, 74

               
               
               Conread position:495-632
               
               
               Cow position:chr5:44054082-44054222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):91, 58

               
               
               Conread position:495-632
               
               
               Cow position:chr5:49559122-49558983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):42, 50

               
               
               Conread position:495-632
               
               
               Cow position:chr5:50729453-50729311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr5:51357547-51357688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr5:59298006-59298143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):44, 23

               
               
               Conread position:495-632
               
               
               Cow position:chr5:60126324-60126189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr5:60520115-60519982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr5:63917457-63917595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr5:64321705-64321564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):88, 34

               
               
               Conread position:495-633
               
               
               Cow position:chr5:57576169-57576028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):84, 110

               
               
               Conread position:495-645
               
               
               Cow position:chr5:15462668-15462517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):47, 102

               
               
               Conread position:495-645
               
               
               Cow position:chr5:46103987-46104133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):50, 46

               
               
               Conread position:496-632
               
               
               Cow position:chr5:15426481-15426341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:496-632
               
               
               Cow position:chr5:64939316-64939179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):49, 22

               
               
               Conread position:496-632
               
               
               Cow position:chr5:72150199-72150067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:105
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:497-629
               
               
               Cow position:chr5:39242243-39242371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:101
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:497-632
               
               
               Cow position:chr5:33537840-33537706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):10, 44

               
               
               Conread position:497-632
               
               
               Cow position:chr5:34916090-34915957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:498-632
               
               
               Cow position:chr5:14703016-14703151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):89, 23

               
               
               Conread position:498-632
               
               
               Cow position:chr5:57626756-57626622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:102
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):39, 47

               
               
               Conread position:499-645
               
               
               Cow position:chr5:5848241-5848384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:112
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:501-628
               
               
               Cow position:chr5:6033187-6033058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:501-628
               
               
               Cow position:chr5:34232689-34232566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:101
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):17, 34

               
               
               Conread position:501-632
               
               
               Cow position:chr5:15363841-15363706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:501-632
               
               
               Cow position:chr5:32087767-32087905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:501-632
               
               
               Cow position:chr5:32269717-32269588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:101
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:501-632
               
               
               Cow position:chr5:54530930-54530798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):83, 19

               
               
               Conread position:503-645
               
               
               Cow position:chr5:24837001-24837143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:509-632
               
               
               Cow position:chr5:61455698-61455570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:104
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:511-643
               
               
               Cow position:chr5:50975829-50975687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:522-632
               
               
               Cow position:chr5:28035636-28035526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:88
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:198-631
               
               
               Cow position:chr6:67951229-67950790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:306
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):95, 7

               
               
               Conread position:199-645
               
               
               Cow position:chr6:38441453-38440999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:315
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):38, 158

               
               
               Conread position:200-425
               
               
               Cow position:chr6:68246562-68246794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):117, 31

               
               
               Conread position:204-316
               
               
               Cow position:chr6:56754421-56754533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:89
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:204-325
               
               
               Cow position:chr6:65831630-65831509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:98
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:204-548
               
               
               Cow position:chr6:37463276-37462936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):26, 91

               
               
               Conread position:204-624
               
               
               Cow position:chr6:50090912-50090479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:297
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):115, 159

               
               
               Conread position:204-632
               
               
               Cow position:chr6:28083762-28084185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:274
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):10, 97

               
               
               Conread position:204-632
               
               
               Cow position:chr6:44194289-44194715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:293
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):12, 29

               
               
               Conread position:205-625
               
               
               Cow position:chr6:26450566-26450154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:293
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):33, 51

               
               
               Conread position:206-420
               
               
               Cow position:chr6:36225375-36225153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):113, 152

               
               
               Conread position:207-325
               
               
               Cow position:chr6:30688247-30688363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:97
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:207-392
               
               
               Cow position:chr6:53732250-53732054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):27, 154

               
               
               Conread position:207-421
               
               
               Cow position:chr6:55417267-55417486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):33, 137

               
               
               Conread position:208-632
               
               
               Cow position:chr6:57404872-57405295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:292
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):30, 114

               
               
               Conread position:208-632
               
               
               Cow position:chr6:67187943-67187521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:303
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):31, 57

               
               
               Conread position:209-389
               
               
               Cow position:chr6:29775878-29775698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):111, 22

               
               
               Conread position:209-462
               
               
               Cow position:chr6:48436094-48435831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):21, 63

               
               
               Conread position:209-631
               
               
               Cow position:chr6:8966355-8965920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 95

               
               
               Conread position:210-449
               
               
               Cow position:chr6:21470170-21470417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:210-632
               
               
               Cow position:chr6:12501093-12500690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:290
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):20, 56

               
               
               Conread position:210-632
               
               
               Cow position:chr6:29210737-29210331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:294
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):198, 22

               
               
               Conread position:211-326
               
               
               Cow position:chr6:19563219-19563334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:91
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:211-632
               
               
               Cow position:chr6:55545915-55546331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:293
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):113, 17

               
               
               Conread position:211-645
               
               
               Cow position:chr6:32122158-32121728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:290
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):26, 99

               
               
               Conread position:212-392
               
               
               Cow position:chr6:31928901-31928709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):10, 139

               
               
               Conread position:212-404
               
               
               Cow position:chr6:1475602-1475406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):9, 76

               
               
               Conread position:212-605
               
               
               Cow position:chr6:4559044-4559446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:280
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):69, 152

               
               
               Conread position:212-625
               
               
               Cow position:chr6:15243519-15243088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:287
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):29, 20

               
               
               Conread position:212-632
               
               
               Cow position:chr6:12669358-12668937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 148

               
               
               Conread position:213-406
               
               
               Cow position:chr6:48157133-48157334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):89, 58

               
               
               Conread position:213-412
               
               
               Cow position:chr6:15172812-15172619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):171, 17

               
               
               Conread position:213-420
               
               
               Cow position:chr6:32453653-32453430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):7, 144

               
               
               Conread position:213-451
               
               
               Cow position:chr6:56394029-56393791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):94, 17

               
               
               Conread position:213-611
               
               
               Cow position:chr6:9219521-9219124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:274
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):100, 140

               
               
               Conread position:213-631
               
               
               Cow position:chr6:56850275-56849849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:286
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):107, 134

               
               
               Conread position:213-632
               
               
               Cow position:chr6:21587177-21587591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:283
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):108, 14

               
               
               Conread position:213-632
               
               
               Cow position:chr6:21736646-21737052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:277
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):194, 23

               
               
               Conread position:214-420
               
               
               Cow position:chr6:20076054-20075836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):101, 145

               
               
               Conread position:214-508
               
               
               Cow position:chr6:16627985-16627687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:202
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):99, 14

               
               
               Conread position:214-626
               
               
               Cow position:chr6:899064-899454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:272
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):238, 77

               
               
               Conread position:214-631
               
               
               Cow position:chr6:38771531-38771125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:291
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):12, 103

               
               
               Conread position:214-632
               
               
               Cow position:chr6:9008368-9008781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 90

               
               
               Conread position:214-632
               
               
               Cow position:chr6:35180995-35181423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 147

               
               
               Conread position:215-418
               
               
               Cow position:chr6:26408247-26408458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):106, 17

               
               
               Conread position:215-438
               
               
               Cow position:chr6:42483670-42483438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):111, 17

               
               
               Conread position:215-538
               
               
               Cow position:chr6:37395149-37395483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:241
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):106, 31

               
               
               Conread position:215-539
               
               
               Cow position:chr6:33510047-33509713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):13, 146

               
               
               Conread position:215-580
               
               
               Cow position:chr6:22849996-22850363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:258
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):102, 143

               
               
               Conread position:215-588
               
               
               Cow position:chr6:23401739-23402115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:255
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):78, 130

               
               
               Conread position:215-588
               
               
               Cow position:chr6:35726346-35725969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:262
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):97, 137

               
               
               Conread position:215-593
               
               
               Cow position:chr6:45388574-45388199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:254
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):106, 22

               
               
               Conread position:215-610
               
               
               Cow position:chr6:17313993-17313582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 13

               
               
               Conread position:215-628
               
               
               Cow position:chr6:827470-827872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:259
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):233, 78

               
               
               Conread position:215-630
               
               
               Cow position:chr6:32866967-32867374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:280
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):106, 14

               
               
               Conread position:215-632
               
               
               Cow position:chr6:12652435-12652036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:279
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):193, 17

               
               
               Conread position:215-632
               
               
               Cow position:chr6:46558311-46557886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 139

               
               
               Conread position:215-632
               
               
               Cow position:chr6:59104860-59104438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:292
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):51, 79

               
               
               Conread position:215-644
               
               
               Cow position:chr6:27888601-27888168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 47

               
               
               Conread position:215-645
               
               
               Cow position:chr6:63251670-63252106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 13

               
               
               Conread position:216-317
               
               
               Cow position:chr6:12711537-12711638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:87
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:216-326
               
               
               Cow position:chr6:51019409-51019296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:92
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:216-401
               
               
               Cow position:chr6:48449071-48448888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):20, 48

               
               
               Conread position:216-405
               
               
               Cow position:chr6:24776393-24776198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):110, 41

               
               
               Conread position:216-411
               
               
               Cow position:chr6:36163998-36163798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):101, 12

               
               
               Conread position:216-418
               
               
               Cow position:chr6:44541061-44540855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):23, 139

               
               
               Conread position:216-418
               
               
               Cow position:chr6:44543890-44544101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):23, 144

               
               
               Conread position:216-419
               
               
               Cow position:chr6:55548275-55548488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):18, 73

               
               
               Conread position:216-420
               
               
               Cow position:chr6:47246037-47245823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):83, 174

               
               
               Conread position:216-427
               
               
               Cow position:chr6:16137512-16137731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):86, 133

               
               
               Conread position:216-438
               
               
               Cow position:chr6:66947562-66947795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):15, 145

               
               
               Conread position:216-445
               
               
               Cow position:chr6:53145425-53145667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):102, 144

               
               
               Conread position:216-504
               
               
               Cow position:chr6:7801145-7801436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):101, 48

               
               
               Conread position:216-571
               
               
               Cow position:chr6:59602960-59603316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):186, 103

               
               
               Conread position:216-618
               
               
               Cow position:chr6:50984473-50984068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 23

               
               
               Conread position:216-626
               
               
               Cow position:chr6:60784130-60783706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:279
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):15, 255

               
               
               Conread position:216-627
               
               
               Cow position:chr6:51893270-51893670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:276
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):192, 60

               
               
               Conread position:216-632
               
               
               Cow position:chr6:37635024-37634619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:265
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):180, 39

               
               
               Conread position:216-632
               
               
               Cow position:chr6:50747263-50746811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:296
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):18, 153

               
               
               Conread position:216-632
               
               
               Cow position:chr6:52478154-52478597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:288
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:216-632
               
               
               Cow position:chr6:53932586-53933018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:294
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):15, 137

               
               
               Conread position:216-632
               
               
               Cow position:chr6:55475492-55475076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:278
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):99, 113

               
               
               Conread position:216-637
               
               
               Cow position:chr6:21061635-21062057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:283
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):23, 127

               
               
               Conread position:216-645
               
               
               Cow position:chr6:3952774-3952339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 16

               
               
               Conread position:217-326
               
               
               Cow position:chr6:55196470-55196361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:88
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:217-405
               
               
               Cow position:chr6:21052191-21052390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):20, 144

               
               
               Conread position:217-415
               
               
               Cow position:chr6:63020596-63020392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):101, 128

               
               
               Conread position:217-420
               
               
               Cow position:chr6:30983770-30983564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):19, 72

               
               
               Conread position:217-429
               
               
               Cow position:chr6:45979928-45980150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):20, 146

               
               
               Conread position:217-445
               
               
               Cow position:chr6:581486-581730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:217-451
               
               
               Cow position:chr6:59438208-59438431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):194, 15

               
               
               Conread position:217-614
               
               
               Cow position:chr6:24468146-24468549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:280
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):98, 15

               
               
               Conread position:217-627
               
               
               Cow position:chr6:60850125-60850555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:285
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):19, 59

               
               
               Conread position:217-629
               
               
               Cow position:chr6:8562971-8562549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:290
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):16, 45

               
               
               Conread position:217-631
               
               
               Cow position:chr6:7189876-7190288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 38

               
               
               Conread position:217-632
               
               
               Cow position:chr6:1704049-1703644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:280
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):20, 41

               
               
               Conread position:217-632
               
               
               Cow position:chr6:2547515-2547071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:290
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):50, 202

               
               
               Conread position:217-632
               
               
               Cow position:chr6:8804286-8804698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 97

               
               
               Conread position:217-632
               
               
               Cow position:chr6:16102936-16103372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:284
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):21, 254

               
               
               Conread position:217-632
               
               
               Cow position:chr6:18988447-18988046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 69

               
               
               Conread position:217-632
               
               
               Cow position:chr6:23696248-23695827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:278
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):104, 48

               
               
               Conread position:217-632
               
               
               Cow position:chr6:29240186-29239774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:283
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):106, 96

               
               
               Conread position:217-632
               
               
               Cow position:chr6:47520306-47519876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:275
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):101, 14

               
               
               Conread position:217-632
               
               
               Cow position:chr6:47575145-47574735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):186, 72

               
               
               Conread position:217-632
               
               
               Cow position:chr6:51581003-51581427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:277
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):104, 14

               
               
               Conread position:217-632
               
               
               Cow position:chr6:54365075-54365495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:287
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):116, 104

               
               
               Conread position:217-632
               
               
               Cow position:chr6:59015325-59015731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:289
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):47, 118

               
               
               Conread position:217-635
               
               
               Cow position:chr6:34475304-34475726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 133

               
               
               Conread position:217-645
               
               
               Cow position:chr6:6063038-6063462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:297
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):100, 145

               
               
               Conread position:217-645
               
               
               Cow position:chr6:17414196-17414634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:284
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):87, 46

               
               
               Conread position:217-645
               
               
               Cow position:chr6:24110541-24110121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:294
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):14, 137

               
               
               Conread position:217-645
               
               
               Cow position:chr6:26728290-26728710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 46

               
               
               Conread position:218-326
               
               
               Cow position:chr6:16738868-16738760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:91
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:218-404
               
               
               Cow position:chr6:62805899-62805703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):13, 146

               
               
               Conread position:218-405
               
               
               Cow position:chr6:28561915-28562109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:218-421
               
               
               Cow position:chr6:45920967-45921170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):106, 132

               
               
               Conread position:218-445
               
               
               Cow position:chr6:12928394-12928162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):17, 137

               
               
               Conread position:218-512
               
               
               Cow position:chr6:47959058-47958761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):96, 46

               
               
               Conread position:218-584
               
               
               Cow position:chr6:10225400-10225761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:253
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):91, 10

               
               
               Conread position:218-603
               
               
               Cow position:chr6:4469021-4468614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:273
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):10, 238

               
               
               Conread position:218-622
               
               
               Cow position:chr6:31846990-31847380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 128

               
               
               Conread position:218-625
               
               
               Cow position:chr6:14913979-14914402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:297
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):13, 64

               
               
               Conread position:218-626
               
               
               Cow position:chr6:59798903-59798504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:280
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):19, 44

               
               
               Conread position:218-631
               
               
               Cow position:chr6:52430765-52431201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:286
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):15, 143

               
               
               Conread position:218-632
               
               
               Cow position:chr6:14696135-14696542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:289
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):19, 82

               
               
               Conread position:218-632
               
               
               Cow position:chr6:14949237-14949651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 52

               
               
               Conread position:218-632
               
               
               Cow position:chr6:15446942-15447378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:298
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):100, 23

               
               
               Conread position:218-633
               
               
               Cow position:chr6:17997063-17997486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 82

               
               
               Conread position:219-419
               
               
               Cow position:chr6:59297297-59297099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:219-420
               
               
               Cow position:chr6:15058628-15058421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):14, 24

               
               
               Conread position:219-423
               
               
               Cow position:chr6:8186936-8187148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):100, 11

               
               
               Conread position:219-446
               
               
               Cow position:chr6:50504707-50504471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):79, 11

               
               
               Conread position:219-567
               
               
               Cow position:chr6:62370935-62371286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:243
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):86, 43

               
               
               Conread position:219-600
               
               
               Cow position:chr6:43134688-43135082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:273
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):16, 37

               
               
               Conread position:219-621
               
               
               Cow position:chr6:34251046-34251446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:276
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):109, 74

               
               
               Conread position:219-626
               
               
               Cow position:chr6:53178882-53178473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:268
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):12, 52

               
               
               Conread position:219-627
               
               
               Cow position:chr6:18080267-18080677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:282
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):99, 9

               
               
               Conread position:219-628
               
               
               Cow position:chr6:27851454-27851871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:281
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):29, 11

               
               
               Conread position:219-632
               
               
               Cow position:chr6:21004932-21004486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:311
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):100, 142

               
               
               Conread position:220-453
               
               
               Cow position:chr6:66839443-66839207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):104, 12

               
               
               Conread position:220-579
               
               
               Cow position:chr6:54854501-54854132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:246
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):95, 139

               
               
               Conread position:220-605
               
               
               Cow position:chr6:19996866-19996477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 137

               
               
               Conread position:220-617
               
               
               Cow position:chr6:7128155-7128555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:263
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):83, 9

               
               
               Conread position:220-631
               
               
               Cow position:chr6:13687568-13687980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:272
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):85, 11

               
               
               Conread position:220-632
               
               
               Cow position:chr6:6060323-6060727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:293
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):89, 43

               
               
               Conread position:220-632
               
               
               Cow position:chr6:16700505-16700089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):232, 123

               
               
               Conread position:220-632
               
               
               Cow position:chr6:23532898-23532493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:282
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):15, 55

               
               
               Conread position:220-632
               
               
               Cow position:chr6:44566677-44566242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:296
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):106, 139

               
               
               Conread position:221-574
               
               
               Cow position:chr6:36645624-36645276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):192, 77

               
               
               Conread position:221-613
               
               
               Cow position:chr6:58370999-58370593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:273
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):17, 125

               
               
               Conread position:221-618
               
               
               Cow position:chr6:27815247-27815625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:267
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):17, 49

               
               
               Conread position:221-632
               
               
               Cow position:chr6:59620910-59620499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:293
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):10, 142

               
               
               Conread position:221-632
               
               
               Cow position:chr6:65264299-65264705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 131

               
               
               Conread position:222-631
               
               
               Cow position:chr6:11247015-11246595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 9

               
               
               Conread position:222-632
               
               
               Cow position:chr6:19696055-19695636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:293
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):99, 19

               
               
               Conread position:223-443
               
               
               Cow position:chr6:55296844-55297069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):103, 136

               
               
               Conread position:223-614
               
               
               Cow position:chr6:4691720-4692136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:293
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):27, 8

               
               
               Conread position:224-630
               
               
               Cow position:chr6:44078762-44078353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 124

               
               
               Conread position:227-554
               
               
               Cow position:chr6:143134-143460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):81, 226

               
               
               Conread position:227-582
               
               
               Cow position:chr6:32287875-32287518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:234
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):96, 131

               
               
               Conread position:227-588
               
               
               Cow position:chr6:62670115-62669748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:267
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):73, 134

               
               
               Conread position:227-632
               
               
               Cow position:chr6:21535284-21534889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:288
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):80, 122

               
               
               Conread position:227-632
               
               
               Cow position:chr6:37149426-37149023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 25

               
               
               Conread position:228-325
               
               
               Cow position:chr6:23381422-23381520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:99
               
               
               Alignm identity:86
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:228-418
               
               
               Cow position:chr6:30825533-30825721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):7, 24

               
               
               Conread position:228-629
               
               
               Cow position:chr6:43345196-43345627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:291
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):8, 122

               
               
               Conread position:228-630
               
               
               Cow position:chr6:48282239-48281827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:285
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):8, 134

               
               
               Conread position:228-630
               
               
               Cow position:chr6:64432176-64431771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 123

               
               
               Conread position:228-631
               
               
               Cow position:chr6:323058-323479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:275
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):5, 132

               
               
               Conread position:228-632
               
               
               Cow position:chr6:5095298-5095720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 36

               
               
               Conread position:228-632
               
               
               Cow position:chr6:7539817-7539404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:281
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):8, 132

               
               
               Conread position:228-632
               
               
               Cow position:chr6:13367526-13367125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 126

               
               
               Conread position:228-632
               
               
               Cow position:chr6:28148507-28148081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:286
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):54, 238

               
               
               Conread position:228-632
               
               
               Cow position:chr6:40032423-40032022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 50

               
               
               Conread position:228-632
               
               
               Cow position:chr6:60474379-60473965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:274
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):8, 136

               
               
               Conread position:228-632
               
               
               Cow position:chr6:60859054-60859476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:278
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):8, 134

               
               
               Conread position:228-632
               
               
               Cow position:chr6:61514954-61515368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 62

               
               
               Conread position:228-636
               
               
               Cow position:chr6:45596302-45596710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:269
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):7, 71

               
               
               Conread position:228-645
               
               
               Cow position:chr6:10399664-10400078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:281
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):10, 98

               
               
               Conread position:228-645
               
               
               Cow position:chr6:37246195-37246613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:287
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):8, 136

               
               
               Conread position:228-645
               
               
               Cow position:chr6:47305583-47305156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 18

               
               
               Conread position:230-404
               
               
               Cow position:chr6:34076404-34076222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:231-632
               
               
               Cow position:chr6:46859931-46860338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:272
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):64, 12

               
               
               Conread position:232-392
               
               
               Cow position:chr6:34463351-34463515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):14, 113

               
               
               Conread position:232-405
               
               
               Cow position:chr6:21475964-21475787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):81, 34

               
               
               Conread position:232-445
               
               
               Cow position:chr6:35318894-35319118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):87, 126

               
               
               Conread position:232-445
               
               
               Cow position:chr6:54831717-54831493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):87, 129

               
               
               Conread position:232-450
               
               
               Cow position:chr6:19225153-19225363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):77, 31

               
               
               Conread position:232-562
               
               
               Cow position:chr6:1429873-1429539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):63, 109

               
               
               Conread position:232-567
               
               
               Cow position:chr6:33206968-33206642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):248, 108

               
               
               Conread position:232-589
               
               
               Cow position:chr6:45064796-45065141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:244
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):148, 61

               
               
               Conread position:232-593
               
               
               Cow position:chr6:53841264-53841630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:250
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):66, 119

               
               
               Conread position:232-602
               
               
               Cow position:chr6:28155934-28156286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:255
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):320, 32

               
               
               Conread position:232-614
               
               
               Cow position:chr6:19293038-19292660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:273
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):11, 114

               
               
               Conread position:232-620
               
               
               Cow position:chr6:35471274-35471681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:258
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):83, 125

               
               
               Conread position:232-621
               
               
               Cow position:chr6:1769955-1770358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:270
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):94, 130

               
               
               Conread position:232-622
               
               
               Cow position:chr6:57545990-57546376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:277
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):80, 31

               
               
               Conread position:232-625
               
               
               Cow position:chr6:10613069-10612703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:265
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):236, 66

               
               
               Conread position:232-631
               
               
               Cow position:chr6:10331859-10332265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:269
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):95, 199

               
               
               Conread position:232-631
               
               
               Cow position:chr6:18447276-18447678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:287
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):89, 119

               
               
               Conread position:232-631
               
               
               Cow position:chr6:60819754-60819346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:286
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):60, 127

               
               
               Conread position:232-632
               
               
               Cow position:chr6:2607847-2607443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:287
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):95, 126

               
               
               Conread position:232-632
               
               
               Cow position:chr6:10176060-10176473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 184

               
               
               Conread position:232-632
               
               
               Cow position:chr6:15243078-15242664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:291
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):61, 118

               
               
               Conread position:232-632
               
               
               Cow position:chr6:15300601-15300987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 89

               
               
               Conread position:232-632
               
               
               Cow position:chr6:16765159-16765562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:269
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):87, 131

               
               
               Conread position:232-632
               
               
               Cow position:chr6:32126291-32125897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 112

               
               
               Conread position:232-632
               
               
               Cow position:chr6:33917618-33918021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:277
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):182, 68

               
               
               Conread position:232-632
               
               
               Cow position:chr6:37467298-37467709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:272
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):93, 242

               
               
               Conread position:232-632
               
               
               Cow position:chr6:47356065-47355654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:278
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):58, 120

               
               
               Conread position:232-632
               
               
               Cow position:chr6:53138699-53139099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:275
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):186, 64

               
               
               Conread position:232-632
               
               
               Cow position:chr6:53460332-53460742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 227

               
               
               Conread position:232-632
               
               
               Cow position:chr6:62325232-62324821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:277
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):6, 112

               
               
               Conread position:232-632
               
               
               Cow position:chr6:65712058-65711657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:268
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):34, 186

               
               
               Conread position:232-632
               
               
               Cow position:chr6:65871270-65870854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:271
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):75, 130

               
               
               Conread position:232-632
               
               
               Cow position:chr6:66434193-66433778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:284
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):89, 119

               
               
               Conread position:232-633
               
               
               Cow position:chr6:38641733-38641327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 163

               
               
               Conread position:232-635
               
               
               Cow position:chr6:53024572-53024971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:265
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):380, 103

               
               
               Conread position:232-635
               
               
               Cow position:chr6:61631369-61631786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 31

               
               
               Conread position:232-637
               
               
               Cow position:chr6:24222938-24223335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:275
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):182, 67

               
               
               Conread position:232-645
               
               
               Cow position:chr6:33302635-33302229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 126

               
               
               Conread position:233-604
               
               
               Cow position:chr6:38610212-38609826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:275
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):80, 129

               
               
               Conread position:233-632
               
               
               Cow position:chr6:5609204-5609610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:274
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):60, 185

               
               
               Conread position:233-632
               
               
               Cow position:chr6:54490508-54490910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 73

               
               
               Conread position:233-633
               
               
               Cow position:chr6:611782-611390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 111

               
               
               Conread position:234-487
               
               
               Cow position:chr6:41014737-41015000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:192
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):74, 116

               
               
               Conread position:234-574
               
               
               Cow position:chr6:46173021-46173370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:237
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):93, 70

               
               
               Conread position:235-415
               
               
               Cow position:chr6:57089440-57089254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):85, 113

               
               
               Conread position:235-632
               
               
               Cow position:chr6:19402081-19401692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:280
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):78, 118

               
               
               Conread position:236-617
               
               
               Cow position:chr6:19754844-19755232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:262
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):83, 6

               
               
               Conread position:236-620
               
               
               Cow position:chr6:19264266-19264658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:255
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):63, 23

               
               
               Conread position:236-632
               
               
               Cow position:chr6:15937617-15938022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 114

               
               
               Conread position:236-632
               
               
               Cow position:chr6:24031598-24031205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:260
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):167, 71

               
               
               Conread position:236-632
               
               
               Cow position:chr6:31564117-31564503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:268
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):170, 43

               
               
               Conread position:236-632
               
               
               Cow position:chr6:35436222-35435834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:258
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):158, 105

               
               
               Conread position:236-632
               
               
               Cow position:chr6:36196437-36196044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:252
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):85, 30

               
               
               Conread position:236-632
               
               
               Cow position:chr6:36470343-36470733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:279
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):170, 35

               
               
               Conread position:236-632
               
               
               Cow position:chr6:66131554-66131138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:284
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):65, 125

               
               
               Conread position:236-633
               
               
               Cow position:chr6:24781316-24781735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:283
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):75, 120

               
               
               Conread position:236-633
               
               
               Cow position:chr6:65903391-65903788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:275
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):60, 65

               
               
               Conread position:236-645
               
               
               Cow position:chr6:38218876-38218489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:277
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):186, 15

               
               
               Conread position:238-558
               
               
               Cow position:chr6:7119399-7119706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):169, 8

               
               
               Conread position:241-410
               
               
               Cow position:chr6:23942444-23942606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):150, 55

               
               
               Conread position:241-618
               
               
               Cow position:chr6:60740240-60739859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 103

               
               
               Conread position:241-631
               
               
               Cow position:chr6:12091756-12092153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 113

               
               
               Conread position:241-632
               
               
               Cow position:chr6:63720422-63720029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:262
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):150, 65

               
               
               Conread position:242-420
               
               
               Cow position:chr6:54127592-54127768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):71, 100

               
               
               Conread position:242-632
               
               
               Cow position:chr6:24004749-24004378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:258
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):164, 51

               
               
               Conread position:242-632
               
               
               Cow position:chr6:29485312-29484920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:257
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):59, 172

               
               
               Conread position:242-645
               
               
               Cow position:chr6:39358114-39358524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:275
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):65, 129

               
               
               Conread position:242-648
               
               
               Cow position:chr6:19446482-19446073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 109

               
               
               Conread position:243-625
               
               
               Cow position:chr6:6264880-6264480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:269
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):78, 112

               
               
               Conread position:243-628
               
               
               Cow position:chr6:34195934-34196314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:270
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):117, 60

               
               
               Conread position:243-629
               
               
               Cow position:chr6:41375998-41375585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:273
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):82, 105

               
               
               Conread position:243-632
               
               
               Cow position:chr6:7103011-7103406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:268
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):78, 119

               
               
               Conread position:243-632
               
               
               Cow position:chr6:10105755-10106166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:275
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):56, 20

               
               
               Conread position:243-632
               
               
               Cow position:chr6:21231740-21231366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:264
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):159, 61

               
               
               Conread position:243-632
               
               
               Cow position:chr6:38207258-38207666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 25

               
               
               Conread position:243-632
               
               
               Cow position:chr6:49398401-49398786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:252
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):165, 69

               
               
               Conread position:243-645
               
               
               Cow position:chr6:38853428-38853841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:267
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):67, 174

               
               
               Conread position:243-645
               
               
               Cow position:chr6:46292127-46292521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:266
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):57, 79

               
               
               Conread position:246-403
               
               
               Cow position:chr6:47022784-47022622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):75, 100

               
               
               Conread position:246-418
               
               
               Cow position:chr6:14471590-14471410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):75, 114

               
               
               Conread position:246-460
               
               
               Cow position:chr6:61681303-61681077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):75, 100

               
               
               Conread position:246-507
               
               
               Cow position:chr6:2585166-2584896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):75, 100

               
               
               Conread position:246-588
               
               
               Cow position:chr6:48803415-48803763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:239
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):37, 100

               
               
               Conread position:246-597
               
               
               Cow position:chr6:60118367-60118011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):66, 94

               
               
               Conread position:246-627
               
               
               Cow position:chr6:41733860-41733462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:273
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):73, 113

               
               
               Conread position:246-628
               
               
               Cow position:chr6:17090806-17090429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:265
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):163, 57

               
               
               Conread position:246-631
               
               
               Cow position:chr6:54133036-54132649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:258
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):66, 41

               
               
               Conread position:246-632
               
               
               Cow position:chr6:5113822-5114217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 108

               
               
               Conread position:246-632
               
               
               Cow position:chr6:12338215-12337814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:273
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):117, 59

               
               
               Conread position:246-632
               
               
               Cow position:chr6:31535348-31535741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:258
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):88, 227

               
               
               Conread position:246-632
               
               
               Cow position:chr6:51835623-51835230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 47

               
               
               Conread position:246-632
               
               
               Cow position:chr6:63047801-63047406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:269
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):162, 56

               
               
               Conread position:247-631
               
               
               Cow position:chr6:15305795-15305413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:271
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):67, 203

               
               
               Conread position:248-562
               
               
               Cow position:chr6:27239781-27240106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:223
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):62, 112

               
               
               Conread position:248-633
               
               
               Cow position:chr6:46466041-46465657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:265
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):67, 99

               
               
               Conread position:250-631
               
               
               Cow position:chr6:28483238-28482846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 98

               
               
               Conread position:252-632
               
               
               Cow position:chr6:35842879-35842487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:277
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):55, 106

               
               
               Conread position:252-632
               
               
               Cow position:chr6:35990020-35990393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:270
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):61, 91

               
               
               Conread position:252-645
               
               
               Cow position:chr6:52413081-52412671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:279
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):75, 107

               
               
               Conread position:254-632
               
               
               Cow position:chr6:445545-445141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:275
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):50, 107

               
               
               Conread position:255-657
               
               
               Cow position:chr6:8125545-8125138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:279
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):66, 104

               
               
               Conread position:258-629
               
               
               Cow position:chr6:19013268-19012902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):164, 63

               
               
               Conread position:267-632
               
               
               Cow position:chr6:20097761-20098134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):147, 140

               
               
               Conread position:268-631
               
               
               Cow position:chr6:40713306-40713671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:246
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):86, 35

               
               
               Conread position:271-632
               
               
               Cow position:chr6:17333850-17334227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:250
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):56, 88

               
               
               Conread position:272-646
               
               
               Cow position:chr6:26915527-26915143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:255
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):27, 66

               
               
               Conread position:277-609
               
               
               Cow position:chr6:57571672-57571326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):39, 180

               
               
               Conread position:277-632
               
               
               Cow position:chr6:8637471-8637105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:237
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):48, 132

               
               
               Conread position:278-631
               
               
               Cow position:chr6:528098-528446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:234
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):22, 15

               
               
               Conread position:286-645
               
               
               Cow position:chr6:21111134-21110787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:253
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):17, 12

               
               
               Conread position:292-632
               
               
               Cow position:chr6:53519450-53519793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):7, 51

               
               
               Conread position:293-630
               
               
               Cow position:chr6:59069449-59069796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:236
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):41, 17

               
               
               Conread position:298-621
               
               
               Cow position:chr6:48112363-48112045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):103, 125

               
               
               Conread position:298-631
               
               
               Cow position:chr6:5302255-5302573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:230
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):20, 30

               
               
               Conread position:298-632
               
               
               Cow position:chr6:7989248-7989586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:239
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):22, 44

               
               
               Conread position:298-645
               
               
               Cow position:chr6:14958174-14958532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):91, 37

               
               
               Conread position:299-630
               
               
               Cow position:chr6:51463467-51463784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:223
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):11, 55

               
               
               Conread position:299-631
               
               
               Cow position:chr6:14838879-14839199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):35, 19

               
               
               Conread position:299-631
               
               
               Cow position:chr6:35993752-35993408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 45

               
               
               Conread position:299-632
               
               
               Cow position:chr6:30974207-30973871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:238
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):27, 50

               
               
               Conread position:299-632
               
               
               Cow position:chr6:47799458-47799128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):109, 42

               
               
               Conread position:299-632
               
               
               Cow position:chr6:67214914-67214571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):107, 42

               
               
               Conread position:300-632
               
               
               Cow position:chr6:4864381-4864710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:231
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):25, 151

               
               
               Conread position:301-632
               
               
               Cow position:chr6:8209441-8209759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):19, 61

               
               
               Conread position:313-632
               
               
               Cow position:chr6:35613265-35613584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):73, 128

               
               
               Conread position:317-632
               
               
               Cow position:chr6:18048879-18049196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):89, 16

               
               
               Conread position:317-632
               
               
               Cow position:chr6:54864515-54864837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):90, 17

               
               
               Conread position:318-632
               
               
               Cow position:chr6:31526193-31525878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):18, 14

               
               
               Conread position:319-622
               
               
               Cow position:chr6:16423847-16423539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:201
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):83, 48

               
               
               Conread position:319-628
               
               
               Cow position:chr6:49002594-49002891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):175, 78

               
               
               Conread position:319-629
               
               
               Cow position:chr6:16764500-16764809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):5, 21

               
               
               Conread position:319-631
               
               
               Cow position:chr6:6401096-6400779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):76, 16

               
               
               Conread position:319-632
               
               
               Cow position:chr6:9452623-9452943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):48, 132

               
               
               Conread position:319-632
               
               
               Cow position:chr6:21869503-21869815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):82, 118

               
               
               Conread position:319-632
               
               
               Cow position:chr6:28976894-28977199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:208
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):89, 136

               
               
               Conread position:319-632
               
               
               Cow position:chr6:54990855-54991172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:212
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):71, 90

               
               
               Conread position:319-632
               
               
               Cow position:chr6:60350146-60350469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:222
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):5, 17

               
               
               Conread position:319-633
               
               
               Cow position:chr6:42565833-42565514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 30

               
               
               Conread position:319-642
               
               
               Cow position:chr6:47640287-47640617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):69, 16

               
               
               Conread position:320-632
               
               
               Cow position:chr6:16707157-16706837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):96, 75

               
               
               Conread position:320-632
               
               
               Cow position:chr6:54867662-54867341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:228
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):14, 22

               
               
               Conread position:320-633
               
               
               Cow position:chr6:37783545-37783243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):95, 87

               
               
               Conread position:320-633
               
               
               Cow position:chr6:53652185-53651870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):85, 134

               
               
               Conread position:321-632
               
               
               Cow position:chr6:6343574-6343256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):13, 21

               
               
               Conread position:321-632
               
               
               Cow position:chr6:12551413-12551097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:203
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):82, 139

               
               
               Conread position:323-589
               
               
               Cow position:chr6:582132-582398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):85, 18

               
               
               Conread position:323-608
               
               
               Cow position:chr6:16316457-16316160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):58, 26

               
               
               Conread position:323-629
               
               
               Cow position:chr6:9750916-9751207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):93, 18

               
               
               Conread position:323-629
               
               
               Cow position:chr6:11169843-11169536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):59, 140

               
               
               Conread position:323-631
               
               
               Cow position:chr6:8787896-8788206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):84, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr6:19681384-19681694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:221
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):91, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr6:26909732-26910039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):175, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr6:46865451-46865763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:220
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):91, 26

               
               
               Conread position:323-632
               
               
               Cow position:chr6:47339215-47339518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):82, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr6:67456859-67456533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):23, 18

               
               
               Conread position:323-633
               
               
               Cow position:chr6:63298890-63299197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:211
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):86, 18

               
               
               Conread position:323-645
               
               
               Cow position:chr6:6098125-6098465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:240
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):85, 18

               
               
               Conread position:323-645
               
               
               Cow position:chr6:25407251-25407575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:230
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):57, 11

               
               
               Conread position:325-624
               
               
               Cow position:chr6:60442546-60442256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):171, 24

               
               
               Conread position:325-631
               
               
               Cow position:chr6:42961224-42961536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):83, 16

               
               
               Conread position:325-632
               
               
               Cow position:chr6:63272473-63272784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:226
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):84, 24

               
               
               Conread position:328-629
               
               
               Cow position:chr6:19427587-19427282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):116, 39

               
               
               Conread position:329-632
               
               
               Cow position:chr6:9026655-9026347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:204
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):103, 38

               
               
               Conread position:330-632
               
               
               Cow position:chr6:457308-457016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):167, 13

               
               
               Conread position:331-632
               
               
               Cow position:chr6:23247833-23248133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):132, 10

               
               
               Conread position:333-632
               
               
               Cow position:chr6:52901369-52901071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):71, 8

               
               
               Conread position:333-632
               
               
               Cow position:chr6:60057524-60057826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):82, 8

               
               
               Conread position:336-632
               
               
               Cow position:chr6:38614942-38614654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):5, 72

               
               
               Conread position:337-622
               
               
               Cow position:chr6:55763981-55763694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):9, 13

               
               
               Conread position:339-624
               
               
               Cow position:chr6:12542804-12543095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:203
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:339-632
               
               
               Cow position:chr6:10695986-10695697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):127, 25

               
               
               Conread position:340-632
               
               
               Cow position:chr6:28318522-28318239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:195
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):158, 51

               
               
               Conread position:349-615
               
               
               Cow position:chr6:61608628-61608354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):59, 102

               
               
               Conread position:349-632
               
               
               Cow position:chr6:54140913-54140643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:200
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):55, 59

               
               
               Conread position:351-632
               
               
               Cow position:chr6:55935864-55936146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):55, 17

               
               
               Conread position:352-624
               
               
               Cow position:chr6:54701654-54701378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):64, 57

               
               
               Conread position:352-632
               
               
               Cow position:chr6:22502798-22503093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):62, 55

               
               
               Conread position:353-632
               
               
               Cow position:chr6:58074160-58073875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):61, 253

               
               
               Conread position:356-624
               
               
               Cow position:chr6:57164538-57164265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):59, 51

               
               
               Conread position:356-632
               
               
               Cow position:chr6:54368795-54369070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):49, 101

               
               
               Conread position:356-633
               
               
               Cow position:chr6:3929427-3929148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):27, 103

               
               
               Conread position:356-655
               
               
               Cow position:chr6:25008828-25008521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):34, 206

               
               
               Conread position:359-632
               
               
               Cow position:chr6:6460655-6460369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:361-631
               
               
               Cow position:chr6:66874455-66874193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):47, 94

               
               
               Conread position:361-632
               
               
               Cow position:chr6:130059-130335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):55, 94

               
               
               Conread position:362-625
               
               
               Cow position:chr6:59109048-59108779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:189
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):52, 45

               
               
               Conread position:362-632
               
               
               Cow position:chr6:53401460-53401199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):52, 120

               
               
               Conread position:362-632
               
               
               Cow position:chr6:67968507-67968784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:189
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):52, 45

               
               
               Conread position:368-632
               
               
               Cow position:chr6:62924899-62925163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):40, 56

               
               
               Conread position:370-632
               
               
               Cow position:chr6:31635593-31635858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):34, 17

               
               
               Conread position:371-632
               
               
               Cow position:chr6:52248038-52248305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):33, 81

               
               
               Conread position:373-632
               
               
               Cow position:chr6:44099178-44098914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):41, 22

               
               
               Conread position:381-632
               
               
               Cow position:chr6:14850630-14850884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):28, 52

               
               
               Conread position:381-633
               
               
               Cow position:chr6:416192-415923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:384-650
               
               
               Cow position:chr6:11637675-11637936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):24, 64

               
               
               Conread position:385-632
               
               
               Cow position:chr6:7824846-7824591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):29, 22

               
               
               Conread position:386-632
               
               
               Cow position:chr6:68049507-68049265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):9, 28

               
               
               Conread position:388-632
               
               
               Cow position:chr6:50445691-50445933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):116, 30

               
               
               Conread position:393-588
               
               
               Cow position:chr6:38234027-38233834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):103, 65

               
               
               Conread position:394-623
               
               
               Cow position:chr6:5445692-5445462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):28, 60

               
               
               Conread position:396-627
               
               
               Cow position:chr6:53731589-53731356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):104, 52

               
               
               Conread position:399-626
               
               
               Cow position:chr6:44984394-44984162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):13, 54

               
               
               Conread position:402-627
               
               
               Cow position:chr6:40834409-40834638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):96, 56

               
               
               Conread position:402-630
               
               
               Cow position:chr6:16411252-16411027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):20, 46

               
               
               Conread position:402-632
               
               
               Cow position:chr6:47150851-47150609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):100, 56

               
               
               Conread position:402-632
               
               
               Cow position:chr6:54288137-54287910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):44, 28

               
               
               Conread position:402-632
               
               
               Cow position:chr6:60239336-60239562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):143, 51

               
               
               Conread position:403-632
               
               
               Cow position:chr6:9839232-9838992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):19, 66

               
               
               Conread position:404-632
               
               
               Cow position:chr6:607317-607092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):139, 7

               
               
               Conread position:410-624
               
               
               Cow position:chr6:57274520-57274307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):12, 46

               
               
               Conread position:411-626
               
               
               Cow position:chr6:5957978-5958187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):174, 40

               
               
               Conread position:411-632
               
               
               Cow position:chr6:16738069-16737850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):89, 37

               
               
               Conread position:411-632
               
               
               Cow position:chr6:52025600-52025824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):87, 45

               
               
               Conread position:411-632
               
               
               Cow position:chr6:62479110-62479336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:412-631
               
               
               Cow position:chr6:49685634-49685416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):86, 46

               
               
               Conread position:412-632
               
               
               Cow position:chr6:5462011-5462219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):131, 8

               
               
               Conread position:412-632
               
               
               Cow position:chr6:25773336-25773551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:412-632
               
               
               Cow position:chr6:60456878-60456660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):113, 73

               
               
               Conread position:418-631
               
               
               Cow position:chr6:58076273-58076055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):79, 33

               
               
               Conread position:431-632
               
               
               Cow position:chr6:1886628-1886833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):15, 170

               
               
               Conread position:431-632
               
               
               Cow position:chr6:45160260-45160462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):33, 150

               
               
               Conread position:441-607
               
               
               Cow position:chr6:603113-602948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:442-632
               
               
               Cow position:chr6:66303822-66304017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):56, 23

               
               
               Conread position:446-628
               
               
               Cow position:chr6:8318146-8318330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):43, 9

               
               
               Conread position:446-632
               
               
               Cow position:chr6:59301804-59301995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:448-629
               
               
               Cow position:chr6:24515181-24515360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:448-632
               
               
               Cow position:chr6:48344348-48344158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:458-632
               
               
               Cow position:chr6:389180-389001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):27, 171

               
               
               Conread position:458-632
               
               
               Cow position:chr6:20230822-20230996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):38, 116

               
               
               Conread position:458-632
               
               
               Cow position:chr6:54294114-54293941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):40, 117

               
               
               Conread position:459-625
               
               
               Cow position:chr6:32986993-32987161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):39, 120

               
               
               Conread position:462-631
               
               
               Cow position:chr6:30826030-30826205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):36, 148

               
               
               Conread position:463-645
               
               
               Cow position:chr6:242811-242631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):34, 113

               
               
               Conread position:467-631
               
               
               Cow position:chr6:12387328-12387493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:470-631
               
               
               Cow position:chr6:12630019-12629855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):33, 89

               
               
               Conread position:470-632
               
               
               Cow position:chr6:24327147-24327308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):25, 51

               
               
               Conread position:470-632
               
               
               Cow position:chr6:33277037-33276869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):28, 147

               
               
               Conread position:471-633
               
               
               Cow position:chr6:61137367-61137200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):27, 75

               
               
               Conread position:471-645
               
               
               Cow position:chr6:54884917-54885096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:475-625
               
               
               Cow position:chr6:53345786-53345633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:476-631
               
               
               Cow position:chr6:41823833-41823995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):24, 56

               
               
               Conread position:476-633
               
               
               Cow position:chr6:39994473-39994632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):13, 46

               
               
               Conread position:477-604
               
               
               Cow position:chr6:50509663-50509536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):66, 25

               
               
               Conread position:485-632
               
               
               Cow position:chr6:20605915-20605763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):15, 59

               
               
               Conread position:490-632
               
               
               Cow position:chr6:37603495-37603353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:492-628
               
               
               Cow position:chr6:56041653-56041788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):23, 72

               
               
               Conread position:493-632
               
               
               Cow position:chr6:3978693-3978837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:493-632
               
               
               Cow position:chr6:47989154-47989015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):92, 55

               
               
               Conread position:494-632
               
               
               Cow position:chr6:49410724-49410859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:494-645
               
               
               Cow position:chr6:56843123-56842976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:495-629
               
               
               Cow position:chr6:21542287-21542153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:495-629
               
               
               Cow position:chr6:32210661-32210794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:108
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):42, 49

               
               
               Conread position:495-630
               
               
               Cow position:chr6:53711082-53710948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:107
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:495-630
               
               
               Cow position:chr6:64449359-64449222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):45, 133

               
               
               Conread position:495-632
               
               
               Cow position:chr6:1499607-1499468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):88, 69

               
               
               Conread position:495-632
               
               
               Cow position:chr6:1783810-1783942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:114
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):48, 71

               
               
               Conread position:495-632
               
               
               Cow position:chr6:2012986-2012849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr6:18968813-18968943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr6:21311781-21311928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr6:47540498-47540356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):48, 20

               
               
               Conread position:495-632
               
               
               Cow position:chr6:48425354-48425491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):48, 100

               
               
               Conread position:495-632
               
               
               Cow position:chr6:49604643-49604513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr6:55607845-55607976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):48, 69

               
               
               Conread position:495-633
               
               
               Cow position:chr6:46571084-46570947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:495-637
               
               
               Cow position:chr6:10705801-10705944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):18, 50

               
               
               Conread position:495-643
               
               
               Cow position:chr6:15923032-15923183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:116
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:498-631
               
               
               Cow position:chr6:45690625-45690762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:105
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:501-632
               
               
               Cow position:chr6:12623431-12623298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):76, 18

               
               
               Conread position:501-632
               
               
               Cow position:chr6:46245356-46245493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:503-631
               
               
               Cow position:chr6:88945-89077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:106
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:503-632
               
               
               Cow position:chr6:51398760-51398631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):38, 5

               
               
               Conread position:504-645
               
               
               Cow position:chr6:21456730-21456873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:115
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):82, 61

               
               
               Conread position:505-624
               
               
               Cow position:chr6:52705759-52705879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:505-631
               
               
               Cow position:chr6:20329982-20329852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:506-632
               
               
               Cow position:chr6:13040413-13040283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:506-645
               
               
               Cow position:chr6:1002277-1002416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:105
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:509-631
               
               
               Cow position:chr6:17067865-17067989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:509-632
               
               
               Cow position:chr6:21812684-21812560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:521-631
               
               
               Cow position:chr6:7111765-7111657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:90
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:521-632
               
               
               Cow position:chr6:3719061-3719176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:523-632
               
               
               Cow position:chr6:5330090-5329981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:93
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):19, 33

               
               
               Conread position:526-632
               
               
               Cow position:chr6:13741631-13741525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:87
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:195-637
               
               
               Cow position:chr7:27387718-27388154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:298
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):116, 32

               
               
               Conread position:198-326
               
               
               Cow position:chr7:53983380-53983252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:198-575
               
               
               Cow position:chr7:32946342-32945963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:247
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):23, 118

               
               
               Conread position:199-628
               
               
               Cow position:chr7:64228614-64229060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:299
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):37, 163

               
               
               Conread position:199-632
               
               
               Cow position:chr7:33279711-33280157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:309
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):23, 169

               
               
               Conread position:201-631
               
               
               Cow position:chr7:52776494-52776922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:286
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):94, 24

               
               
               Conread position:202-631
               
               
               Cow position:chr7:64268717-64269153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:298
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):29, 162

               
               
               Conread position:202-632
               
               
               Cow position:chr7:22793606-22793179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:290
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):252, 104

               
               
               Conread position:205-412
               
               
               Cow position:chr7:23552700-23552908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):104, 23

               
               
               Conread position:205-631
               
               
               Cow position:chr7:19465990-19466434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 117

               
               
               Conread position:206-327
               
               
               Cow position:chr7:23609650-23609527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:101
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:206-389
               
               
               Cow position:chr7:31074304-31074498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):27, 146

               
               
               Conread position:206-389
               
               
               Cow position:chr7:41121998-41122189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):17, 143

               
               
               Conread position:206-406
               
               
               Cow position:chr7:10885165-10884958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):92, 152

               
               
               Conread position:206-627
               
               
               Cow position:chr7:43895098-43894661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:288
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):55, 21

               
               
               Conread position:206-632
               
               
               Cow position:chr7:28563131-28563550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):201, 46

               
               
               Conread position:207-420
               
               
               Cow position:chr7:50866901-50867120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):109, 30

               
               
               Conread position:207-456
               
               
               Cow position:chr7:61740260-61740512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):100, 147

               
               
               Conread position:207-518
               
               
               Cow position:chr7:7535801-7535480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:217
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):106, 144

               
               
               Conread position:207-628
               
               
               Cow position:chr7:19399431-19399840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:276
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):20, 57

               
               
               Conread position:208-524
               
               
               Cow position:chr7:168390-168728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):13, 27

               
               
               Conread position:209-388
               
               
               Cow position:chr7:42335586-42335405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:209-402
               
               
               Cow position:chr7:31049337-31049527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:210-632
               
               
               Cow position:chr7:40321744-40321318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 56

               
               
               Conread position:211-496
               
               
               Cow position:chr7:10081443-10081731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):26, 135

               
               
               Conread position:211-632
               
               
               Cow position:chr7:39150218-39149769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:289
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):12, 151

               
               
               Conread position:211-632
               
               
               Cow position:chr7:39158952-39158509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:291
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):12, 151

               
               
               Conread position:211-632
               
               
               Cow position:chr7:39160446-39160008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:297
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):12, 68

               
               
               Conread position:211-635
               
               
               Cow position:chr7:68577495-68577076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:283
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):102, 77

               
               
               Conread position:212-389
               
               
               Cow position:chr7:38357389-38357562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:212-449
               
               
               Cow position:chr7:8387148-8387400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):19, 62

               
               
               Conread position:212-575
               
               
               Cow position:chr7:49417867-49417493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):55, 249

               
               
               Conread position:212-624
               
               
               Cow position:chr7:43215757-43215352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:269
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):9, 86

               
               
               Conread position:212-632
               
               
               Cow position:chr7:51020046-51019619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 151

               
               
               Conread position:212-645
               
               
               Cow position:chr7:37362112-37361703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:294
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):193, 20

               
               
               Conread position:213-325
               
               
               Cow position:chr7:3311298-3311185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:91
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:213-496
               
               
               Cow position:chr7:62953773-62953485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):25, 71

               
               
               Conread position:213-592
               
               
               Cow position:chr7:14524730-14524352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:260
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):70, 15

               
               
               Conread position:213-624
               
               
               Cow position:chr7:8878142-8877719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:288
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):8, 19

               
               
               Conread position:213-627
               
               
               Cow position:chr7:25195810-25195372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 151

               
               
               Conread position:213-631
               
               
               Cow position:chr7:16022555-16022135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 143

               
               
               Conread position:213-632
               
               
               Cow position:chr7:39144948-39144522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:298
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):24, 35

               
               
               Conread position:214-326
               
               
               Cow position:chr7:13606717-13606603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:95
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):6, 19

               
               
               Conread position:214-412
               
               
               Cow position:chr7:44574479-44574278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):85, 129

               
               
               Conread position:214-420
               
               
               Cow position:chr7:46963999-46963786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):105, 14

               
               
               Conread position:214-630
               
               
               Cow position:chr7:30155687-30156124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:296
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):22, 144

               
               
               Conread position:214-630
               
               
               Cow position:chr7:32791947-32791528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:284
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):136, 17

               
               
               Conread position:214-632
               
               
               Cow position:chr7:28324892-28324467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:289
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):17, 183

               
               
               Conread position:214-632
               
               
               Cow position:chr7:29510192-29509786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:270
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):106, 14

               
               
               Conread position:214-645
               
               
               Cow position:chr7:60547408-60547845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:296
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):13, 133

               
               
               Conread position:215-401
               
               
               Cow position:chr7:11511974-11511790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):106, 16

               
               
               Conread position:215-420
               
               
               Cow position:chr7:48376067-48375855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):102, 16

               
               
               Conread position:215-423
               
               
               Cow position:chr7:42943563-42943352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):98, 126

               
               
               Conread position:215-438
               
               
               Cow position:chr7:35779995-35779767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):90, 31

               
               
               Conread position:215-461
               
               
               Cow position:chr7:9816258-9815997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):113, 144

               
               
               Conread position:215-517
               
               
               Cow position:chr7:3160053-3159763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):98, 12

               
               
               Conread position:215-604
               
               
               Cow position:chr7:47547666-47547266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 102

               
               
               Conread position:215-622
               
               
               Cow position:chr7:2897402-2897003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:279
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):282, 91

               
               
               Conread position:215-626
               
               
               Cow position:chr7:8777463-8777037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:300
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):102, 33

               
               
               Conread position:215-628
               
               
               Cow position:chr7:39099760-39100180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:280
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):86, 16

               
               
               Conread position:215-630
               
               
               Cow position:chr7:15570295-15569877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:275
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):100, 257

               
               
               Conread position:215-631
               
               
               Cow position:chr7:41293491-41293915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 51

               
               
               Conread position:215-631
               
               
               Cow position:chr7:52378879-52378458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:295
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):109, 127

               
               
               Conread position:215-632
               
               
               Cow position:chr7:1720711-1721136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:288
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):104, 13

               
               
               Conread position:215-632
               
               
               Cow position:chr7:24796451-24796859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:288
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):21, 50

               
               
               Conread position:215-632
               
               
               Cow position:chr7:37455583-37455155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 148

               
               
               Conread position:215-632
               
               
               Cow position:chr7:40567314-40566906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):168, 91

               
               
               Conread position:215-632
               
               
               Cow position:chr7:58867892-58867442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:298
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):104, 140

               
               
               Conread position:215-632
               
               
               Cow position:chr7:58967531-58967107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:295
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):16, 146

               
               
               Conread position:215-644
               
               
               Cow position:chr7:25415656-25415216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 145

               
               
               Conread position:215-645
               
               
               Cow position:chr7:39444363-39444782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 47

               
               
               Conread position:216-324
               
               
               Cow position:chr7:8376625-8376520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:89
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:216-326
               
               
               Cow position:chr7:59233429-59233321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:90
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:216-327
               
               
               Cow position:chr7:35651470-35651580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:89
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:216-389
               
               
               Cow position:chr7:44942815-44942635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):14, 130

               
               
               Conread position:216-397
               
               
               Cow position:chr7:31885852-31885663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):103, 142

               
               
               Conread position:216-403
               
               
               Cow position:chr7:18958282-18958477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):15, 133

               
               
               Conread position:216-412
               
               
               Cow position:chr7:35096765-35096969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):101, 143

               
               
               Conread position:216-419
               
               
               Cow position:chr7:63772306-63772097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):103, 15

               
               
               Conread position:216-420
               
               
               Cow position:chr7:28441433-28441223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):25, 129

               
               
               Conread position:216-420
               
               
               Cow position:chr7:56893069-56893283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):59, 82

               
               
               Conread position:216-450
               
               
               Cow position:chr7:56556896-56557134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):162, 0

               
               
               Conread position:216-472
               
               
               Cow position:chr7:68119085-68118830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):21, 31

               
               
               Conread position:216-524
               
               
               Cow position:chr7:39131244-39131550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):17, 129

               
               
               Conread position:216-524
               
               
               Cow position:chr7:59438710-59438389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):21, 140

               
               
               Conread position:216-568
               
               
               Cow position:chr7:33914226-33913866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:240
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):105, 129

               
               
               Conread position:216-588
               
               
               Cow position:chr7:33515151-33514763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:253
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):19, 143

               
               
               Conread position:216-624
               
               
               Cow position:chr7:33626345-33626758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:266
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):22, 137

               
               
               Conread position:216-626
               
               
               Cow position:chr7:46105658-46106048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:285
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):191, 55

               
               
               Conread position:216-628
               
               
               Cow position:chr7:4719970-4720398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:274
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):83, 21

               
               
               Conread position:216-630
               
               
               Cow position:chr7:9137109-9136673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:304
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):22, 68

               
               
               Conread position:216-630
               
               
               Cow position:chr7:36717205-36717627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:278
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):15, 152

               
               
               Conread position:216-631
               
               
               Cow position:chr7:3304839-3304402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 137

               
               
               Conread position:216-631
               
               
               Cow position:chr7:36248350-36247940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 137

               
               
               Conread position:216-631
               
               
               Cow position:chr7:41315169-41315605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:278
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):86, 21

               
               
               Conread position:216-632
               
               
               Cow position:chr7:20968681-20968266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:269
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):108, 171

               
               
               Conread position:216-632
               
               
               Cow position:chr7:42222690-42223114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:304
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):109, 12

               
               
               Conread position:216-632
               
               
               Cow position:chr7:46823932-46823501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 145

               
               
               Conread position:216-632
               
               
               Cow position:chr7:48715122-48714680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:285
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):50, 244

               
               
               Conread position:216-632
               
               
               Cow position:chr7:50860252-50859841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:275
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):140, 16

               
               
               Conread position:216-632
               
               
               Cow position:chr7:53053149-53053574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:285
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):66, 16

               
               
               Conread position:216-632
               
               
               Cow position:chr7:54513149-54513590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 247

               
               
               Conread position:216-632
               
               
               Cow position:chr7:58862617-58863051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:301
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):11, 81

               
               
               Conread position:216-645
               
               
               Cow position:chr7:4893109-4892688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:288
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):22, 103

               
               
               Conread position:217-326
               
               
               Cow position:chr7:14816568-14816679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:90
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:217-326
               
               
               Cow position:chr7:22832500-22832391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:88
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:217-371
               
               
               Cow position:chr7:3747506-3747356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):19, 42

               
               
               Conread position:217-420
               
               
               Cow position:chr7:33104407-33104209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):96, 47

               
               
               Conread position:217-420
               
               
               Cow position:chr7:43450803-43450586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):16, 42

               
               
               Conread position:217-438
               
               
               Cow position:chr7:54108612-54108840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):137, 0

               
               
               Conread position:217-438
               
               
               Cow position:chr7:58800428-58800194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):22, 143

               
               
               Conread position:217-460
               
               
               Cow position:chr7:23678186-23677927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):21, 134

               
               
               Conread position:217-613
               
               
               Cow position:chr7:14536029-14536432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 106

               
               
               Conread position:217-624
               
               
               Cow position:chr7:48359255-48358850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:281
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):9, 105

               
               
               Conread position:217-630
               
               
               Cow position:chr7:53097852-53097432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:290
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):14, 144

               
               
               Conread position:217-632
               
               
               Cow position:chr7:535461-535893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:295
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):14, 129

               
               
               Conread position:217-632
               
               
               Cow position:chr7:32284184-32283745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:294
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):17, 146

               
               
               Conread position:217-632
               
               
               Cow position:chr7:36665583-36665163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 30

               
               
               Conread position:217-632
               
               
               Cow position:chr7:47513429-47513859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:293
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):16, 48

               
               
               Conread position:217-632
               
               
               Cow position:chr7:47931535-47931963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 144

               
               
               Conread position:217-632
               
               
               Cow position:chr7:57537278-57537692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:287
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):20, 85

               
               
               Conread position:217-645
               
               
               Cow position:chr7:14519786-14520216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 138

               
               
               Conread position:217-645
               
               
               Cow position:chr7:48721650-48722086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 15

               
               
               Conread position:218-382
               
               
               Cow position:chr7:64384857-64385027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:218-405
               
               
               Cow position:chr7:519271-519463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):101, 10

               
               
               Conread position:218-466
               
               
               Cow position:chr7:18464240-18464486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):165, 103

               
               
               Conread position:218-517
               
               
               Cow position:chr7:38360980-38361282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):101, 130

               
               
               Conread position:218-622
               
               
               Cow position:chr7:32893982-32894408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:290
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):20, 254

               
               
               Conread position:218-624
               
               
               Cow position:chr7:23624410-23624807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:284
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):98, 141

               
               
               Conread position:218-629
               
               
               Cow position:chr7:21239873-21240274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:272
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):19, 40

               
               
               Conread position:218-632
               
               
               Cow position:chr7:249251-249672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 10

               
               
               Conread position:218-632
               
               
               Cow position:chr7:11714187-11714595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:275
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):184, 89

               
               
               Conread position:218-632
               
               
               Cow position:chr7:20219587-20220007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 48

               
               
               Conread position:218-632
               
               
               Cow position:chr7:20535128-20534705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:281
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):9, 194

               
               
               Conread position:218-632
               
               
               Cow position:chr7:25722420-25722836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 16

               
               
               Conread position:218-632
               
               
               Cow position:chr7:40263417-40263820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:270
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):346, 74

               
               
               Conread position:218-632
               
               
               Cow position:chr7:62733446-62733012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:291
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):15, 48

               
               
               Conread position:218-632
               
               
               Cow position:chr7:64135215-64135632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 10

               
               
               Conread position:218-632
               
               
               Cow position:chr7:66748277-66748691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:285
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):81, 189

               
               
               Conread position:218-633
               
               
               Cow position:chr7:23205373-23205798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:286
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):45, 53

               
               
               Conread position:218-633
               
               
               Cow position:chr7:63749228-63749648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:283
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):112, 18

               
               
               Conread position:218-645
               
               
               Cow position:chr7:26838907-26838480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:294
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):196, 80

               
               
               Conread position:218-663
               
               
               Cow position:chr7:1376379-1375948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 13

               
               
               Conread position:219-325
               
               
               Cow position:chr7:38078114-38078011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:88
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:219-397
               
               
               Cow position:chr7:53862760-53862582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):107, 17

               
               
               Conread position:219-402
               
               
               Cow position:chr7:47523466-47523282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):90, 75

               
               
               Conread position:219-420
               
               
               Cow position:chr7:53834334-53834543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):100, 141

               
               
               Conread position:219-422
               
               
               Cow position:chr7:65619176-65619387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):10, 131

               
               
               Conread position:219-439
               
               
               Cow position:chr7:19671897-19671674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):44, 111

               
               
               Conread position:219-447
               
               
               Cow position:chr7:11994929-11995170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):74, 12

               
               
               Conread position:219-449
               
               
               Cow position:chr7:12488678-12488447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):183, 73

               
               
               Conread position:219-512
               
               
               Cow position:chr7:38429462-38429759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):19, 123

               
               
               Conread position:219-584
               
               
               Cow position:chr7:11958188-11958550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:239
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):8, 57

               
               
               Conread position:219-593
               
               
               Cow position:chr7:55085918-55085527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:267
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):38, 12

               
               
               Conread position:219-621
               
               
               Cow position:chr7:46051915-46051498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 134

               
               
               Conread position:219-627
               
               
               Cow position:chr7:46818246-46818660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:280
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):102, 42

               
               
               Conread position:219-629
               
               
               Cow position:chr7:11066725-11066310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):188, 52

               
               
               Conread position:219-631
               
               
               Cow position:chr7:50075495-50075893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:274
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):28, 111

               
               
               Conread position:219-631
               
               
               Cow position:chr7:53763338-53763751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 11

               
               
               Conread position:219-632
               
               
               Cow position:chr7:46856716-46857128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:282
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):86, 12

               
               
               Conread position:219-632
               
               
               Cow position:chr7:51910364-51909965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:272
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):102, 10

               
               
               Conread position:219-633
               
               
               Cow position:chr7:39939996-39939568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:279
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):9, 145

               
               
               Conread position:219-645
               
               
               Cow position:chr7:25263624-25263190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 70

               
               
               Conread position:220-396
               
               
               Cow position:chr7:53791340-53791520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):17, 134

               
               
               Conread position:220-420
               
               
               Cow position:chr7:63101658-63101466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:220-624
               
               
               Cow position:chr7:40510890-40510475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:264
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):17, 59

               
               
               Conread position:220-630
               
               
               Cow position:chr7:43185038-43184629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:290
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):91, 11

               
               
               Conread position:220-632
               
               
               Cow position:chr7:34554499-34554093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:276
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):101, 49

               
               
               Conread position:220-632
               
               
               Cow position:chr7:60483179-60483589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:267
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):101, 46

               
               
               Conread position:221-405
               
               
               Cow position:chr7:8523529-8523718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):98, 134

               
               
               Conread position:221-538
               
               
               Cow position:chr7:30017270-30017590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):77, 101

               
               
               Conread position:221-631
               
               
               Cow position:chr7:66894287-66894707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 135

               
               
               Conread position:221-645
               
               
               Cow position:chr7:27079880-27079449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:283
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):12, 236

               
               
               Conread position:222-639
               
               
               Cow position:chr7:10373203-10373645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:296
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):100, 44

               
               
               Conread position:224-449
               
               
               Cow position:chr7:6043888-6044123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):96, 200

               
               
               Conread position:224-631
               
               
               Cow position:chr7:52536021-52536417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:263
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):181, 79

               
               
               Conread position:224-632
               
               
               Cow position:chr7:35286399-35286799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 7

               
               
               Conread position:225-631
               
               
               Cow position:chr7:15855084-15855475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:273
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):36, 122

               
               
               Conread position:225-631
               
               
               Cow position:chr7:59688785-59688374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 39

               
               
               Conread position:226-403
               
               
               Cow position:chr7:40344631-40344808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):94, 117

               
               
               Conread position:226-632
               
               
               Cow position:chr7:47776111-47775700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 132

               
               
               Conread position:227-629
               
               
               Cow position:chr7:10393-9979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:265
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):93, 344

               
               
               Conread position:227-632
               
               
               Cow position:chr7:20537601-20537194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 65

               
               
               Conread position:227-632
               
               
               Cow position:chr7:39164639-39164220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:283
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):92, 118

               
               
               Conread position:228-414
               
               
               Cow position:chr7:34216448-34216263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):81, 33

               
               
               Conread position:228-438
               
               
               Cow position:chr7:26909518-26909735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):79, 122

               
               
               Conread position:228-609
               
               
               Cow position:chr7:2578991-2579389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:271
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):73, 120

               
               
               Conread position:228-630
               
               
               Cow position:chr7:67873442-67873016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:291
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):8, 132

               
               
               Conread position:228-631
               
               
               Cow position:chr7:37698054-37697637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 132

               
               
               Conread position:228-632
               
               
               Cow position:chr7:6706548-6706129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:272
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):8, 25

               
               
               Conread position:228-632
               
               
               Cow position:chr7:8812688-8813094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:285
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):8, 134

               
               
               Conread position:228-632
               
               
               Cow position:chr7:17782446-17782840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 50

               
               
               Conread position:228-632
               
               
               Cow position:chr7:25393545-25393121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 64

               
               
               Conread position:228-632
               
               
               Cow position:chr7:29474903-29474519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:293
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):8, 94

               
               
               Conread position:228-632
               
               
               Cow position:chr7:31315546-31315153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:272
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):186, 111

               
               
               Conread position:228-632
               
               
               Cow position:chr7:34428825-34428393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:302
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):8, 132

               
               
               Conread position:228-632
               
               
               Cow position:chr7:40009074-40008650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 36

               
               
               Conread position:228-632
               
               
               Cow position:chr7:63112531-63112940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:285
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):8, 116

               
               
               Conread position:228-632
               
               
               Cow position:chr7:68172912-68173322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 131

               
               
               Conread position:228-640
               
               
               Cow position:chr7:16667819-16667409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:274
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):8, 123

               
               
               Conread position:230-325
               
               
               Cow position:chr7:16285332-16285427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:96
               
               
               Alignm identity:82
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:232-325
               
               
               Cow position:chr7:40361894-40361801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:94
               
               
               Alignm identity:79
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:232-326
               
               
               Cow position:chr7:30290702-30290796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:95
               
               
               Alignm identity:82
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:232-389
               
               
               Cow position:chr7:18016911-18016752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):89, 109

               
               
               Conread position:232-403
               
               
               Cow position:chr7:59942026-59941852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):61, 108

               
               
               Conread position:232-404
               
               
               Cow position:chr7:206655-206488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:232-404
               
               
               Cow position:chr7:9858593-9858418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):81, 120

               
               
               Conread position:232-405
               
               
               Cow position:chr7:17000970-17000788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):87, 127

               
               
               Conread position:232-420
               
               
               Cow position:chr7:30012070-30011878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):89, 112

               
               
               Conread position:232-420
               
               
               Cow position:chr7:42898884-42899072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):11, 102

               
               
               Conread position:232-420
               
               
               Cow position:chr7:60272758-60272567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):54, 121

               
               
               Conread position:232-421
               
               
               Cow position:chr7:28428511-28428330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:232-422
               
               
               Cow position:chr7:40414761-40414956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):80, 110

               
               
               Conread position:232-423
               
               
               Cow position:chr7:10559742-10559939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):64, 122

               
               
               Conread position:232-452
               
               
               Cow position:chr7:41729067-41729292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):74, 16

               
               
               Conread position:232-482
               
               
               Cow position:chr7:55315963-55316214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):48, 113

               
               
               Conread position:232-485
               
               
               Cow position:chr7:39947006-39947265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:184
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):27, 233

               
               
               Conread position:232-531
               
               
               Cow position:chr7:27063016-27062710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:220
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):87, 37

               
               
               Conread position:232-578
               
               
               Cow position:chr7:48020666-48020306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:248
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):81, 112

               
               
               Conread position:232-612
               
               
               Cow position:chr7:20918122-20918496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:259
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):152, 80

               
               
               Conread position:232-613
               
               
               Cow position:chr7:14482307-14481908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:273
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):82, 19

               
               
               Conread position:232-618
               
               
               Cow position:chr7:23251343-23251706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:260
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):266, 71

               
               
               Conread position:232-622
               
               
               Cow position:chr7:69066920-69066539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:266
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):174, 70

               
               
               Conread position:232-628
               
               
               Cow position:chr7:29479762-29479358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:272
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):81, 110

               
               
               Conread position:232-629
               
               
               Cow position:chr7:25445621-25445236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:265
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):19, 68

               
               
               Conread position:232-630
               
               
               Cow position:chr7:10943303-10943719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:278
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):61, 23

               
               
               Conread position:232-630
               
               
               Cow position:chr7:30931742-30932143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 54

               
               
               Conread position:232-630
               
               
               Cow position:chr7:42894700-42894285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:288
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):23, 126

               
               
               Conread position:232-630
               
               
               Cow position:chr7:51039673-51039266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:285
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):89, 27

               
               
               Conread position:232-630
               
               
               Cow position:chr7:53613354-53612980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:262
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):239, 82

               
               
               Conread position:232-631
               
               
               Cow position:chr7:44454026-44454437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:294
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):70, 242

               
               
               Conread position:232-632
               
               
               Cow position:chr7:20631-20234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:279
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):182, 61

               
               
               Conread position:232-632
               
               
               Cow position:chr7:1262251-1261851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:271
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):175, 67

               
               
               Conread position:232-632
               
               
               Cow position:chr7:1558979-1558568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:285
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):87, 15

               
               
               Conread position:232-632
               
               
               Cow position:chr7:4129546-4129958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 61

               
               
               Conread position:232-632
               
               
               Cow position:chr7:4452845-4452432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:272
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):67, 47

               
               
               Conread position:232-632
               
               
               Cow position:chr7:23456583-23456984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:264
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):63, 31

               
               
               Conread position:232-632
               
               
               Cow position:chr7:27990437-27990850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:271
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):86, 117

               
               
               Conread position:232-632
               
               
               Cow position:chr7:29300536-29300927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:276
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):254, 10

               
               
               Conread position:232-632
               
               
               Cow position:chr7:31170718-31171120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:268
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):88, 125

               
               
               Conread position:232-632
               
               
               Cow position:chr7:33068067-33068468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:277
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):95, 129

               
               
               Conread position:232-632
               
               
               Cow position:chr7:39148044-39147629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:277
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):67, 33

               
               
               Conread position:232-632
               
               
               Cow position:chr7:39416147-39415737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 227

               
               
               Conread position:232-632
               
               
               Cow position:chr7:40406884-40406495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:265
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):79, 11

               
               
               Conread position:232-632
               
               
               Cow position:chr7:44596466-44596861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 227

               
               
               Conread position:232-632
               
               
               Cow position:chr7:52295358-52294964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:271
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):94, 106

               
               
               Conread position:232-632
               
               
               Cow position:chr7:58170965-58170573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):208, 74

               
               
               Conread position:232-632
               
               
               Cow position:chr7:59076072-59075683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:281
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):182, 32

               
               
               Conread position:232-632
               
               
               Cow position:chr7:67839565-67839173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:270
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):198, 67

               
               
               Conread position:232-633
               
               
               Cow position:chr7:14029547-14029167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 111

               
               
               Conread position:232-635
               
               
               Cow position:chr7:37372222-37371839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:260
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):216, 37

               
               
               Conread position:232-635
               
               
               Cow position:chr7:64003684-64003296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:270
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):286, 71

               
               
               Conread position:232-645
               
               
               Cow position:chr7:14076046-14076451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:271
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):29, 119

               
               
               Conread position:232-645
               
               
               Cow position:chr7:23663856-23664278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:281
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):95, 129

               
               
               Conread position:232-645
               
               
               Cow position:chr7:33698194-33697792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:292
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):80, 114

               
               
               Conread position:232-645
               
               
               Cow position:chr7:35274845-35275257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:277
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):112, 63

               
               
               Conread position:232-645
               
               
               Cow position:chr7:54712657-54712234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 219

               
               
               Conread position:232-653
               
               
               Cow position:chr7:61790112-61790548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 28

               
               
               Conread position:233-421
               
               
               Cow position:chr7:44993840-44993645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):88, 116

               
               
               Conread position:233-624
               
               
               Cow position:chr7:4765079-4764681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:264
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):74, 87

               
               
               Conread position:233-624
               
               
               Cow position:chr7:31504089-31503690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:278
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):65, 69

               
               
               Conread position:233-625
               
               
               Cow position:chr7:49751369-49750969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:266
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):38, 45

               
               
               Conread position:233-632
               
               
               Cow position:chr7:13963450-13963035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:275
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):88, 369

               
               
               Conread position:233-632
               
               
               Cow position:chr7:19797686-19798100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:292
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):94, 126

               
               
               Conread position:233-632
               
               
               Cow position:chr7:30276978-30276565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:272
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):60, 87

               
               
               Conread position:233-632
               
               
               Cow position:chr7:43711452-43711051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:259
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):72, 117

               
               
               Conread position:233-645
               
               
               Cow position:chr7:50065877-50066293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:277
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):74, 231

               
               
               Conread position:234-519
               
               
               Cow position:chr7:39635097-39635387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):86, 111

               
               
               Conread position:234-626
               
               
               Cow position:chr7:24220890-24220517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:270
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):176, 30

               
               
               Conread position:234-631
               
               
               Cow position:chr7:18388155-18388565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 119

               
               
               Conread position:234-631
               
               
               Cow position:chr7:32692788-32693217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:288
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):61, 124

               
               
               Conread position:234-632
               
               
               Cow position:chr7:6058345-6057963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:279
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):173, 65

               
               
               Conread position:234-632
               
               
               Cow position:chr7:18508306-18508698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:264
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):51, 118

               
               
               Conread position:234-632
               
               
               Cow position:chr7:62603421-62603015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:285
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):37, 127

               
               
               Conread position:235-420
               
               
               Cow position:chr7:49941894-49942083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):93, 20

               
               
               Conread position:235-627
               
               
               Cow position:chr7:37394537-37394154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:263
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):80, 175

               
               
               Conread position:236-405
               
               
               Cow position:chr7:10385118-10384941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):85, 113

               
               
               Conread position:236-486
               
               
               Cow position:chr7:29505349-29505093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):85, 62

               
               
               Conread position:236-549
               
               
               Cow position:chr7:8658751-8658429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):79, 213

               
               
               Conread position:236-627
               
               
               Cow position:chr7:34433042-34433443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 122

               
               
               Conread position:236-629
               
               
               Cow position:chr7:43109300-43109697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 123

               
               
               Conread position:236-631
               
               
               Cow position:chr7:42295854-42296236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:255
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):131, 33

               
               
               Conread position:236-632
               
               
               Cow position:chr7:600552-600172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:269
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):260, 70

               
               
               Conread position:236-632
               
               
               Cow position:chr7:13594012-13593609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 32

               
               
               Conread position:236-632
               
               
               Cow position:chr7:14458694-14459084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:263
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):129, 78

               
               
               Conread position:236-632
               
               
               Cow position:chr7:23568491-23568908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 122

               
               
               Conread position:236-632
               
               
               Cow position:chr7:25859965-25860356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:265
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):83, 116

               
               
               Conread position:236-632
               
               
               Cow position:chr7:33386153-33385766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:276
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):85, 27

               
               
               Conread position:236-632
               
               
               Cow position:chr7:43234226-43234614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:263
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):178, 57

               
               
               Conread position:236-632
               
               
               Cow position:chr7:55687945-55688365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:275
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):60, 340

               
               
               Conread position:236-632
               
               
               Cow position:chr7:64572823-64573228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:277
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):62, 88

               
               
               Conread position:237-420
               
               
               Cow position:chr7:30154773-30154961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):72, 107

               
               
               Conread position:237-516
               
               
               Cow position:chr7:18947523-18947797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):169, 55

               
               
               Conread position:237-539
               
               
               Cow position:chr7:20411287-20411603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):69, 27

               
               
               Conread position:237-630
               
               
               Cow position:chr7:67817135-67816743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:265
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):75, 180

               
               
               Conread position:237-632
               
               
               Cow position:chr7:49105967-49106370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:267
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):76, 236

               
               
               Conread position:238-539
               
               
               Cow position:chr7:40308282-40308590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):61, 111

               
               
               Conread position:239-624
               
               
               Cow position:chr7:4582497-4582895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:275
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):74, 118

               
               
               Conread position:240-421
               
               
               Cow position:chr7:21228315-21228502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):41, 117

               
               
               Conread position:241-646
               
               
               Cow position:chr7:19981636-19982023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:284
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):167, 61

               
               
               Conread position:242-624
               
               
               Cow position:chr7:49820373-49820749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:262
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):76, 22

               
               
               Conread position:242-631
               
               
               Cow position:chr7:1761962-1761552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 106

               
               
               Conread position:242-632
               
               
               Cow position:chr7:11176504-11176874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:265
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):69, 100

               
               
               Conread position:242-632
               
               
               Cow position:chr7:23679361-23679763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:267
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):182, 78

               
               
               Conread position:242-632
               
               
               Cow position:chr7:43908426-43908040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:259
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):167, 56

               
               
               Conread position:243-542
               
               
               Cow position:chr7:69133188-69132875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):60, 170

               
               
               Conread position:243-645
               
               
               Cow position:chr7:58301710-58302125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:265
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):78, 170

               
               
               Conread position:245-635
               
               
               Cow position:chr7:59031201-59030818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:251
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):73, 104

               
               
               Conread position:246-404
               
               
               Cow position:chr7:32813673-32813506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):81, 113

               
               
               Conread position:246-420
               
               
               Cow position:chr7:52839396-52839571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):97, 5

               
               
               Conread position:246-420
               
               
               Cow position:chr7:54090714-54090537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):97, 87

               
               
               Conread position:246-427
               
               
               Cow position:chr7:34464581-34464396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):74, 97

               
               
               Conread position:246-613
               
               
               Cow position:chr7:57659934-57660311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:276
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):53, 103

               
               
               Conread position:246-621
               
               
               Cow position:chr7:914275-913893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:264
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):20, 118

               
               
               Conread position:246-622
               
               
               Cow position:chr7:3336334-3336709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:261
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):66, 97

               
               
               Conread position:246-624
               
               
               Cow position:chr7:41911213-41910818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:259
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):73, 35

               
               
               Conread position:246-628
               
               
               Cow position:chr7:15755217-15755613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:269
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):53, 17

               
               
               Conread position:246-631
               
               
               Cow position:chr7:14006112-14005704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:271
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):78, 114

               
               
               Conread position:246-631
               
               
               Cow position:chr7:64949331-64948951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 99

               
               
               Conread position:246-632
               
               
               Cow position:chr7:17966899-17967286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:261
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):69, 17

               
               
               Conread position:246-632
               
               
               Cow position:chr7:37569279-37568862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:276
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):78, 121

               
               
               Conread position:246-632
               
               
               Cow position:chr7:39129374-39129760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:279
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):54, 22

               
               
               Conread position:246-632
               
               
               Cow position:chr7:53202942-53202562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:276
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):63, 114

               
               
               Conread position:246-632
               
               
               Cow position:chr7:53382408-53382029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:249
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):243, 53

               
               
               Conread position:246-632
               
               
               Cow position:chr7:56820361-56820739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:261
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):92, 85

               
               
               Conread position:246-645
               
               
               Cow position:chr7:3026489-3026904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:278
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):69, 113

               
               
               Conread position:247-416
               
               
               Cow position:chr7:11884057-11884230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):74, 58

               
               
               Conread position:248-632
               
               
               Cow position:chr7:36830858-36830495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:258
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):67, 76

               
               
               Conread position:249-632
               
               
               Cow position:chr7:48667627-48667259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:251
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):140, 57

               
               
               Conread position:249-632
               
               
               Cow position:chr7:59168475-59168110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:246
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):249, 33

               
               
               Conread position:251-632
               
               
               Cow position:chr7:44496346-44496732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:268
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):75, 106

               
               
               Conread position:251-632
               
               
               Cow position:chr7:46116412-46116819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:284
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):38, 128

               
               
               Conread position:255-632
               
               
               Cow position:chr7:57162349-57161981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:253
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):241, 72

               
               
               Conread position:255-632
               
               
               Cow position:chr7:59692284-59691905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:255
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):60, 73

               
               
               Conread position:259-632
               
               
               Cow position:chr7:39904304-39903936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):64, 116

               
               
               Conread position:263-632
               
               
               Cow position:chr7:9146859-9146475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:261
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):53, 152

               
               
               Conread position:266-632
               
               
               Cow position:chr7:50772524-50772899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:255
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):52, 92

               
               
               Conread position:271-631
               
               
               Cow position:chr7:29279818-29280190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:251
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):71, 189

               
               
               Conread position:273-632
               
               
               Cow position:chr7:40710327-40709941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:272
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):48, 82

               
               
               Conread position:274-632
               
               
               Cow position:chr7:28917283-28916915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):127, 46

               
               
               Conread position:282-626
               
               
               Cow position:chr7:21565377-21565712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:227
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):41, 127

               
               
               Conread position:284-575
               
               
               Cow position:chr7:28544358-28544065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:195
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):99, 36

               
               
               Conread position:286-632
               
               
               Cow position:chr7:60153633-60153271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:232
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):31, 57

               
               
               Conread position:290-632
               
               
               Cow position:chr7:15566930-15566602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):5, 53

               
               
               Conread position:294-632
               
               
               Cow position:chr7:32915287-32914943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):108, 16

               
               
               Conread position:298-625
               
               
               Cow position:chr7:9800523-9800192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:231
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):64, 22

               
               
               Conread position:298-629
               
               
               Cow position:chr7:38082324-38081991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:221
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):106, 20

               
               
               Conread position:298-631
               
               
               Cow position:chr7:24872929-24873262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:231
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):16, 57

               
               
               Conread position:298-632
               
               
               Cow position:chr7:147581-147244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):78, 28

               
               
               Conread position:298-632
               
               
               Cow position:chr7:20176541-20176878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):110, 22

               
               
               Conread position:298-632
               
               
               Cow position:chr7:25867332-25867673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):36, 22

               
               
               Conread position:298-632
               
               
               Cow position:chr7:40067830-40067490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:235
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):14, 54

               
               
               Conread position:298-632
               
               
               Cow position:chr7:41327862-41328206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):16, 164

               
               
               Conread position:298-632
               
               
               Cow position:chr7:59843581-59843923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:222
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):36, 44

               
               
               Conread position:298-632
               
               
               Cow position:chr7:61552088-61551741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:239
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):36, 22

               
               
               Conread position:298-645
               
               
               Cow position:chr7:36278471-36278114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):28, 90

               
               
               Conread position:298-645
               
               
               Cow position:chr7:38697016-38696667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:238
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):23, 48

               
               
               Conread position:299-626
               
               
               Cow position:chr7:63023314-63022978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:232
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):22, 53

               
               
               Conread position:299-628
               
               
               Cow position:chr7:22651663-22651990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:225
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):17, 23

               
               
               Conread position:299-629
               
               
               Cow position:chr7:27283843-27283514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:227
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):13, 99

               
               
               Conread position:299-629
               
               
               Cow position:chr7:37952346-37952014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):109, 40

               
               
               Conread position:299-631
               
               
               Cow position:chr7:40189717-40189390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:234
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):15, 23

               
               
               Conread position:299-632
               
               
               Cow position:chr7:12408073-12408407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:240
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):26, 43

               
               
               Conread position:299-632
               
               
               Cow position:chr7:17816922-17816586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:240
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):22, 48

               
               
               Conread position:299-632
               
               
               Cow position:chr7:34422099-34422430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:220
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):22, 108

               
               
               Conread position:299-632
               
               
               Cow position:chr7:40952696-40953030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):21, 82

               
               
               Conread position:299-632
               
               
               Cow position:chr7:44986820-44986490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:235
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):38, 21

               
               
               Conread position:299-632
               
               
               Cow position:chr7:62793966-62793615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):19, 182

               
               
               Conread position:299-637
               
               
               Cow position:chr7:32710818-32711152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):10, 35

               
               
               Conread position:299-645
               
               
               Cow position:chr7:10512545-10512893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):14, 37

               
               
               Conread position:300-606
               
               
               Cow position:chr7:45158283-45157981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:221
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):103, 41

               
               
               Conread position:300-658
               
               
               Cow position:chr7:9193070-9193438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:250
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):15, 38

               
               
               Conread position:303-632
               
               
               Cow position:chr7:49648519-49648197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):104, 18

               
               
               Conread position:311-595
               
               
               Cow position:chr7:58350811-58351086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):187, 30

               
               
               Conread position:312-627
               
               
               Cow position:chr7:40303102-40303427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):32, 147

               
               
               Conread position:314-631
               
               
               Cow position:chr7:64364376-64364695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:224
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):20, 6

               
               
               Conread position:316-632
               
               
               Cow position:chr7:11011529-11011860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):36, 25

               
               
               Conread position:317-632
               
               
               Cow position:chr7:42244555-42244861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:216
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:318-629
               
               
               Cow position:chr7:39451000-39451298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):90, 126

               
               
               Conread position:318-629
               
               
               Cow position:chr7:53697758-53698080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):80, 159

               
               
               Conread position:319-625
               
               
               Cow position:chr7:36570011-36569686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:229
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):76, 89

               
               
               Conread position:319-629
               
               
               Cow position:chr7:52784658-52784968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):95, 30

               
               
               Conread position:319-631
               
               
               Cow position:chr7:39325874-39325576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:208
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):114, 76

               
               
               Conread position:319-632
               
               
               Cow position:chr7:23646759-23646435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):95, 88

               
               
               Conread position:319-632
               
               
               Cow position:chr7:23936259-23935942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:211
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):14, 23

               
               
               Conread position:319-632
               
               
               Cow position:chr7:26631664-26631979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):64, 134

               
               
               Conread position:319-632
               
               
               Cow position:chr7:26737198-26737507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):112, 88

               
               
               Conread position:319-632
               
               
               Cow position:chr7:45331686-45331377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:209
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):85, 137

               
               
               Conread position:319-632
               
               
               Cow position:chr7:47698153-47697856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):124, 65

               
               
               Conread position:320-615
               
               
               Cow position:chr7:30816145-30816437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):180, 71

               
               
               Conread position:320-621
               
               
               Cow position:chr7:19230367-19230663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):47, 21

               
               
               Conread position:320-631
               
               
               Cow position:chr7:41464613-41464296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):215, 21

               
               
               Conread position:320-632
               
               
               Cow position:chr7:26911294-26911605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):87, 23

               
               
               Conread position:320-632
               
               
               Cow position:chr7:28096017-28095718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:207
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):149, 157

               
               
               Conread position:320-632
               
               
               Cow position:chr7:56347678-56347984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):12, 30

               
               
               Conread position:321-595
               
               
               Cow position:chr7:58923544-58923264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):16, 11

               
               
               Conread position:321-629
               
               
               Cow position:chr7:8977678-8977987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):177, 91

               
               
               Conread position:321-632
               
               
               Cow position:chr7:48406348-48406668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:232
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):55, 20

               
               
               Conread position:321-645
               
               
               Cow position:chr7:35893561-35893230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):60, 42

               
               
               Conread position:323-539
               
               
               Cow position:chr7:36774511-36774292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):55, 20

               
               
               Conread position:323-601
               
               
               Cow position:chr7:34412135-34412411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):175, 20

               
               
               Conread position:323-631
               
               
               Cow position:chr7:255676-255975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):220, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr7:2172893-2172589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):50, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr7:32079594-32079291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:210
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):85, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr7:38060283-38060601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):91, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr7:52718496-52718802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):110, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr7:53989193-53988891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):103, 18

               
               
               Conread position:324-593
               
               
               Cow position:chr7:5212334-5212607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):77, 17

               
               
               Conread position:324-632
               
               
               Cow position:chr7:48243815-48243507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):90, 83

               
               
               Conread position:324-632
               
               
               Cow position:chr7:50095528-50095213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):90, 9

               
               
               Conread position:324-632
               
               
               Cow position:chr7:57258881-57259197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:223
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):84, 25

               
               
               Conread position:325-632
               
               
               Cow position:chr7:8868968-8868652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):85, 16

               
               
               Conread position:325-632
               
               
               Cow position:chr7:18306704-18307011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):98, 24

               
               
               Conread position:325-633
               
               
               Cow position:chr7:67820257-67819951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):81, 16

               
               
               Conread position:326-632
               
               
               Cow position:chr7:3311979-3311672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):172, 15

               
               
               Conread position:333-632
               
               
               Cow position:chr7:3283492-3283192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:211
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):165, 8

               
               
               Conread position:333-632
               
               
               Cow position:chr7:21650232-21649934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):100, 8

               
               
               Conread position:333-650
               
               
               Cow position:chr7:37142240-37142550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):74, 8

               
               
               Conread position:336-631
               
               
               Cow position:chr7:44049240-44049533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):79, 31

               
               
               Conread position:340-627
               
               
               Cow position:chr7:7507677-7507394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:340-632
               
               
               Cow position:chr7:19267243-19267537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 118

               
               
               Conread position:340-632
               
               
               Cow position:chr7:25511997-25512288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):64, 99

               
               
               Conread position:342-610
               
               
               Cow position:chr7:22828289-22828564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:344-632
               
               
               Cow position:chr7:3773142-3773438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):8, 74

               
               
               Conread position:346-630
               
               
               Cow position:chr7:63913763-63914027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):150, 42

               
               
               Conread position:349-632
               
               
               Cow position:chr7:17757151-17756871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):65, 38

               
               
               Conread position:351-589
               
               
               Cow position:chr7:48638692-48638444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):8, 28

               
               
               Conread position:351-630
               
               
               Cow position:chr7:59558061-59558328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:201
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):106, 65

               
               
               Conread position:351-632
               
               
               Cow position:chr7:25960582-25960304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):57, 101

               
               
               Conread position:351-632
               
               
               Cow position:chr7:43882197-43881910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):63, 56

               
               
               Conread position:351-632
               
               
               Cow position:chr7:44589742-44590014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):147, 36

               
               
               Conread position:352-631
               
               
               Cow position:chr7:24932302-24932580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):55, 26

               
               
               Conread position:352-632
               
               
               Cow position:chr7:27509830-27509549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):83, 55

               
               
               Conread position:352-632
               
               
               Cow position:chr7:57911726-57911440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):69, 57

               
               
               Conread position:358-632
               
               
               Cow position:chr7:22623993-22624273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):50, 110

               
               
               Conread position:361-632
               
               
               Cow position:chr7:26485679-26485405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):47, 135

               
               
               Conread position:361-632
               
               
               Cow position:chr7:34084147-34084418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):188, 92

               
               
               Conread position:361-632
               
               
               Cow position:chr7:45593145-45592871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):47, 91

               
               
               Conread position:362-628
               
               
               Cow position:chr7:18858445-18858177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):52, 47

               
               
               Conread position:362-630
               
               
               Cow position:chr7:53361293-53361542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):181, 26

               
               
               Conread position:363-632
               
               
               Cow position:chr7:32372961-32372691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:193
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):135, 100

               
               
               Conread position:365-628
               
               
               Cow position:chr7:9075154-9074896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):41, 92

               
               
               Conread position:366-624
               
               
               Cow position:chr7:40051658-40051919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:194
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):48, 43

               
               
               Conread position:366-632
               
               
               Cow position:chr7:66179690-66179967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):38, 11

               
               
               Conread position:367-632
               
               
               Cow position:chr7:34223794-34223516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:369-632
               
               
               Cow position:chr7:45927067-45927323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):38, 86

               
               
               Conread position:371-632
               
               
               Cow position:chr7:26887859-26888132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:373-641
               
               
               Cow position:chr7:8375361-8375099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):41, 34

               
               
               Conread position:375-630
               
               
               Cow position:chr7:42429969-42429703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):37, 90

               
               
               Conread position:375-633
               
               
               Cow position:chr7:39518385-39518132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):36, 75

               
               
               Conread position:377-645
               
               
               Cow position:chr7:35651984-35652261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:204
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):9, 88

               
               
               Conread position:378-620
               
               
               Cow position:chr7:40336129-40335883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):29, 78

               
               
               Conread position:382-632
               
               
               Cow position:chr7:39930371-39930130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:179
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):34, 13

               
               
               Conread position:385-616
               
               
               Cow position:chr7:36714545-36714786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):14, 31

               
               
               Conread position:385-628
               
               
               Cow position:chr7:65689451-65689694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):18, 60

               
               
               Conread position:385-631
               
               
               Cow position:chr7:205819-205585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):28, 60

               
               
               Conread position:396-632
               
               
               Cow position:chr7:40991774-40991538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):20, 64

               
               
               Conread position:398-603
               
               
               Cow position:chr7:5300323-5300530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):11, 59

               
               
               Conread position:402-632
               
               
               Cow position:chr7:44094873-44095111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):7, 11

               
               
               Conread position:403-632
               
               
               Cow position:chr7:46148921-46148696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):19, 52

               
               
               Conread position:405-617
               
               
               Cow position:chr7:35742341-35742558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):12, 50

               
               
               Conread position:406-632
               
               
               Cow position:chr7:28090292-28090072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):16, 51

               
               
               Conread position:411-631
               
               
               Cow position:chr7:12212547-12212773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:161
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):42, 68

               
               
               Conread position:411-631
               
               
               Cow position:chr7:24718479-24718702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):89, 40

               
               
               Conread position:411-632
               
               
               Cow position:chr7:11715767-11715536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:411-632
               
               
               Cow position:chr7:16220075-16220293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):109, 9

               
               
               Conread position:411-632
               
               
               Cow position:chr7:42431881-42431656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):34, 20

               
               
               Conread position:411-633
               
               
               Cow position:chr7:61765370-61765145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):91, 154

               
               
               Conread position:412-630
               
               
               Cow position:chr7:24778068-24778278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):86, 35

               
               
               Conread position:412-632
               
               
               Cow position:chr7:39528940-39529168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):88, 41

               
               
               Conread position:412-650
               
               
               Cow position:chr7:13928101-13928340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):41, 47

               
               
               Conread position:415-632
               
               
               Cow position:chr7:3729136-3728923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):128, 43

               
               
               Conread position:433-631
               
               
               Cow position:chr7:20794232-20794432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):56, 18

               
               
               Conread position:441-632
               
               
               Cow position:chr7:23619061-23619253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):57, 14

               
               
               Conread position:443-632
               
               
               Cow position:chr7:7142038-7142234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):55, 15

               
               
               Conread position:443-632
               
               
               Cow position:chr7:14712178-14712361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):14, 122

               
               
               Conread position:443-632
               
               
               Cow position:chr7:51072264-51072072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):55, 15

               
               
               Conread position:444-632
               
               
               Cow position:chr7:26012446-26012256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):139, 54

               
               
               Conread position:444-632
               
               
               Cow position:chr7:53992721-53992530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):13, 8

               
               
               Conread position:446-632
               
               
               Cow position:chr7:34670131-34669948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):92, 5

               
               
               Conread position:454-630
               
               
               Cow position:chr7:10069701-10069875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):35, 13

               
               
               Conread position:455-632
               
               
               Cow position:chr7:27349219-27349395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):43, 61

               
               
               Conread position:458-624
               
               
               Cow position:chr7:26915326-26915154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:458-631
               
               
               Cow position:chr7:45658379-45658553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:458-632
               
               
               Cow position:chr7:4418453-4418634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:458-632
               
               
               Cow position:chr7:20415294-20415472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:458-633
               
               
               Cow position:chr7:41445368-41445192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):31, 121

               
               
               Conread position:460-632
               
               
               Cow position:chr7:39042606-39042437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):5, 61

               
               
               Conread position:463-631
               
               
               Cow position:chr7:39401963-39401788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:463-632
               
               
               Cow position:chr7:12201919-12202084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):35, 139

               
               
               Conread position:463-632
               
               
               Cow position:chr7:49942424-49942594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):76, 30

               
               
               Conread position:463-645
               
               
               Cow position:chr7:12995163-12994978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):33, 14

               
               
               Conread position:469-617
               
               
               Cow position:chr7:21327030-21326885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):27, 8

               
               
               Conread position:470-632
               
               
               Cow position:chr7:35779447-35779281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):27, 99

               
               
               Conread position:470-632
               
               
               Cow position:chr7:50108285-50108452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:470-632
               
               
               Cow position:chr7:63085555-63085394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):73, 104

               
               
               Conread position:471-630
               
               
               Cow position:chr7:64102413-64102575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):99, 27

               
               
               Conread position:471-632
               
               
               Cow position:chr7:8785959-8785798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):25, 71

               
               
               Conread position:471-632
               
               
               Cow position:chr7:14187243-14187403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):72, 32

               
               
               Conread position:471-632
               
               
               Cow position:chr7:27136497-27136330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:476-632
               
               
               Cow position:chr7:11422629-11422474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):65, 41

               
               
               Conread position:476-632
               
               
               Cow position:chr7:63771896-63771734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):20, 69

               
               
               Conread position:477-632
               
               
               Cow position:chr7:24213873-24213712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:477-632
               
               
               Cow position:chr7:58614782-58614626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):21, 110

               
               
               Conread position:481-632
               
               
               Cow position:chr7:40571258-40571100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:491-632
               
               
               Cow position:chr7:47503630-47503491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):9, 56

               
               
               Conread position:492-630
               
               
               Cow position:chr7:59645885-59646027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:493-614
               
               
               Cow position:chr7:27359504-27359624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:99
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:493-630
               
               
               Cow position:chr7:12659020-12659163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:493-630
               
               
               Cow position:chr7:61823883-61824022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:109
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:493-632
               
               
               Cow position:chr7:5399070-5399215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:493-632
               
               
               Cow position:chr7:33989930-33989793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:117
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):44, 56

               
               
               Conread position:493-632
               
               
               Cow position:chr7:63299240-63299098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:493-645
               
               
               Cow position:chr7:10122681-10122529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:494-632
               
               
               Cow position:chr7:40121434-40121298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):120, 57

               
               
               Conread position:495-623
               
               
               Cow position:chr7:24564644-24564778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:495-630
               
               
               Cow position:chr7:10448811-10448949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):88, 132

               
               
               Conread position:495-631
               
               
               Cow position:chr7:25015149-25015289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:495-631
               
               
               Cow position:chr7:25023487-25023627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr7:6800582-6800723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr7:15608380-15608242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):92, 35

               
               
               Conread position:495-632
               
               
               Cow position:chr7:20780122-20779981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr7:28584216-28584081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr7:32819785-32819644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr7:40070406-40070274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr7:51319768-51319628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):89, 53

               
               
               Conread position:495-632
               
               
               Cow position:chr7:52383006-52383141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):42, 50

               
               
               Conread position:495-632
               
               
               Cow position:chr7:56838525-56838666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr7:65122312-65122175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):48, 60

               
               
               Conread position:495-633
               
               
               Cow position:chr7:36746292-36746151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:495-646
               
               
               Cow position:chr7:6745174-6745019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):42, 95

               
               
               Conread position:496-632
               
               
               Cow position:chr7:58362919-58362779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:497-623
               
               
               Cow position:chr7:53785991-53786121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:104
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:498-633
               
               
               Cow position:chr7:5914173-5914034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:110
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:499-627
               
               
               Cow position:chr7:59941583-59941459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:501-630
               
               
               Cow position:chr7:57244124-57244255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:501-632
               
               
               Cow position:chr7:29010431-29010558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:503-629
               
               
               Cow position:chr7:61601416-61601547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:503-632
               
               
               Cow position:chr7:6077748-6077880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:102
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:503-632
               
               
               Cow position:chr7:11160035-11160169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:108
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:503-632
               
               
               Cow position:chr7:61817977-61818105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:100
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:505-631
               
               
               Cow position:chr7:268954-268827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):35, 68

               
               
               Conread position:505-632
               
               
               Cow position:chr7:36533991-36533864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:98
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:505-632
               
               
               Cow position:chr7:41551695-41551567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):34, 12

               
               
               Conread position:505-632
               
               
               Cow position:chr7:68170640-68170768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:103
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):81, 58

               
               
               Conread position:508-645
               
               
               Cow position:chr7:46928945-46928804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:509-630
               
               
               Cow position:chr7:5242074-5241952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:513-631
               
               
               Cow position:chr7:27072927-27073045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:514-630
               
               
               Cow position:chr7:66161901-66162020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:517-632
               
               
               Cow position:chr7:13645407-13645522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:90
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:518-645
               
               
               Cow position:chr7:38429914-38429782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:521-632
               
               
               Cow position:chr7:42335295-42335179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:94
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:522-632
               
               
               Cow position:chr7:34004311-34004199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:93
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:528-632
               
               
               Cow position:chr7:21522019-21521914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:86
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:536-632
               
               
               Cow position:chr7:43103528-43103623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:97
               
               
               Alignm identity:83
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:184-615
               
               
               Cow position:chr8:43439865-43439424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:291
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):5, 23

               
               
               Conread position:195-632
               
               
               Cow position:chr8:31645790-31646206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:288
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):43, 33

               
               
               Conread position:195-632
               
               
               Cow position:chr8:46952761-46952328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 32

               
               
               Conread position:197-609
               
               
               Cow position:chr8:26009130-26008706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 165

               
               
               Conread position:198-633
               
               
               Cow position:chr8:47342979-47342534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 29

               
               
               Conread position:199-632
               
               
               Cow position:chr8:54052545-54052106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:293
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):34, 112

               
               
               Conread position:201-452
               
               
               Cow position:chr8:48173761-48174021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):36, 65

               
               
               Conread position:201-551
               
               
               Cow position:chr8:28378524-28378873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:252
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):114, 96

               
               
               Conread position:207-632
               
               
               Cow position:chr8:10942510-10942934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:287
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):104, 24

               
               
               Conread position:208-622
               
               
               Cow position:chr8:39426415-39425972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:289
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):23, 64

               
               
               Conread position:208-632
               
               
               Cow position:chr8:24498482-24498049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 21

               
               
               Conread position:208-666
               
               
               Cow position:chr8:24328612-24329081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:325
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):35, 59

               
               
               Conread position:209-628
               
               
               Cow position:chr8:23018284-23018709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:287
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):102, 19

               
               
               Conread position:210-404
               
               
               Cow position:chr8:36034726-36034936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):11, 148

               
               
               Conread position:210-424
               
               
               Cow position:chr8:37148545-37148320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):114, 149

               
               
               Conread position:211-326
               
               
               Cow position:chr8:4723047-4722932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:90
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:211-326
               
               
               Cow position:chr8:25786030-25786145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:95
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:211-417
               
               
               Cow position:chr8:19223428-19223639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):22, 145

               
               
               Conread position:211-438
               
               
               Cow position:chr8:1651821-1651589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):108, 19

               
               
               Conread position:211-631
               
               
               Cow position:chr8:537683-538114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:297
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):101, 17

               
               
               Conread position:213-406
               
               
               Cow position:chr8:6416931-6417132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):24, 15

               
               
               Conread position:213-450
               
               
               Cow position:chr8:5477628-5477868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):108, 15

               
               
               Conread position:214-420
               
               
               Cow position:chr8:690056-690262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):107, 25

               
               
               Conread position:214-503
               
               
               Cow position:chr8:61845317-61845624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):8, 82

               
               
               Conread position:214-611
               
               
               Cow position:chr8:20783036-20783443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 14

               
               
               Conread position:214-614
               
               
               Cow position:chr8:35520246-35519846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:268
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):33, 82

               
               
               Conread position:214-632
               
               
               Cow position:chr8:8667960-8668397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 17

               
               
               Conread position:215-390
               
               
               Cow position:chr8:5385455-5385637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:215-402
               
               
               Cow position:chr8:48182732-48182536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):21, 144

               
               
               Conread position:215-418
               
               
               Cow position:chr8:54306580-54306375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):106, 131

               
               
               Conread position:215-629
               
               
               Cow position:chr8:53606294-53606724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 16

               
               
               Conread position:215-630
               
               
               Cow position:chr8:37298705-37298278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 142

               
               
               Conread position:215-632
               
               
               Cow position:chr8:8924118-8924545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:296
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):104, 16

               
               
               Conread position:215-632
               
               
               Cow position:chr8:17179817-17180224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 25

               
               
               Conread position:215-632
               
               
               Cow position:chr8:43190812-43191225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:281
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):22, 145

               
               
               Conread position:215-632
               
               
               Cow position:chr8:54032103-54031678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 53

               
               
               Conread position:216-323
               
               
               Cow position:chr8:6475316-6475423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:88
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:216-403
               
               
               Cow position:chr8:8112967-8112770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):22, 34

               
               
               Conread position:216-403
               
               
               Cow position:chr8:39968054-39968248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):21, 133

               
               
               Conread position:216-406
               
               
               Cow position:chr8:39380068-39380260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):105, 137

               
               
               Conread position:216-411
               
               
               Cow position:chr8:61234183-61234379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):21, 109

               
               
               Conread position:216-419
               
               
               Cow position:chr8:20327624-20327833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):22, 136

               
               
               Conread position:216-420
               
               
               Cow position:chr8:28506729-28506925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):20, 118

               
               
               Conread position:216-420
               
               
               Cow position:chr8:51511631-51511837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):105, 47

               
               
               Conread position:216-438
               
               
               Cow position:chr8:55089633-55089855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):96, 16

               
               
               Conread position:216-456
               
               
               Cow position:chr8:1526512-1526761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):16, 101

               
               
               Conread position:216-459
               
               
               Cow position:chr8:11124339-11124588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):21, 142

               
               
               Conread position:216-511
               
               
               Cow position:chr8:4992777-4992481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):21, 134

               
               
               Conread position:216-523
               
               
               Cow position:chr8:6909937-6910250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):103, 12

               
               
               Conread position:216-530
               
               
               Cow position:chr8:52197228-52197556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):23, 136

               
               
               Conread position:216-535
               
               
               Cow position:chr8:55900796-55901129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):22, 195

               
               
               Conread position:216-538
               
               
               Cow position:chr8:41721965-41722287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:231
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):124, 105

               
               
               Conread position:216-556
               
               
               Cow position:chr8:6194209-6193846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):22, 137

               
               
               Conread position:216-590
               
               
               Cow position:chr8:27731266-27730885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 143

               
               
               Conread position:216-597
               
               
               Cow position:chr8:57219019-57218631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:251
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):22, 84

               
               
               Conread position:216-618
               
               
               Cow position:chr8:33125715-33125312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:276
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):102, 15

               
               
               Conread position:216-621
               
               
               Cow position:chr8:1188139-1187738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 136

               
               
               Conread position:216-627
               
               
               Cow position:chr8:8927333-8927764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:281
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):102, 50

               
               
               Conread position:216-628
               
               
               Cow position:chr8:21223852-21224263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:287
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):15, 78

               
               
               Conread position:216-630
               
               
               Cow position:chr8:669350-669763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:268
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):189, 68

               
               
               Conread position:216-630
               
               
               Cow position:chr8:34769727-34769310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:292
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):15, 42

               
               
               Conread position:216-631
               
               
               Cow position:chr8:8189832-8190267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:287
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):68, 267

               
               
               Conread position:216-631
               
               
               Cow position:chr8:9130719-9131125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:270
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):27, 87

               
               
               Conread position:216-631
               
               
               Cow position:chr8:15394632-15395053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 28

               
               
               Conread position:216-631
               
               
               Cow position:chr8:27138575-27138987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 15

               
               
               Conread position:216-631
               
               
               Cow position:chr8:46964966-46964517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 136

               
               
               Conread position:216-632
               
               
               Cow position:chr8:17199202-17199637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 135

               
               
               Conread position:216-632
               
               
               Cow position:chr8:20212270-20212706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:299
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):15, 149

               
               
               Conread position:216-632
               
               
               Cow position:chr8:35827575-35828006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 53

               
               
               Conread position:216-632
               
               
               Cow position:chr8:38356625-38357049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:289
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):15, 148

               
               
               Conread position:216-632
               
               
               Cow position:chr8:38861496-38861896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:268
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):186, 12

               
               
               Conread position:216-632
               
               
               Cow position:chr8:40887998-40888399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:285
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):192, 43

               
               
               Conread position:216-632
               
               
               Cow position:chr8:45687450-45687869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:293
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):22, 141

               
               
               Conread position:216-632
               
               
               Cow position:chr8:51904829-51905244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:281
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):22, 79

               
               
               Conread position:216-637
               
               
               Cow position:chr8:18017747-18017309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 144

               
               
               Conread position:216-645
               
               
               Cow position:chr8:30419274-30418829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:304
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):17, 147

               
               
               Conread position:217-326
               
               
               Cow position:chr8:25083402-25083293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:90
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:217-326
               
               
               Cow position:chr8:32260318-32260209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:90
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:217-339
               
               
               Cow position:chr8:50770385-50770261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:97
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:217-391
               
               
               Cow position:chr8:28382858-28383042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):20, 143

               
               
               Conread position:217-404
               
               
               Cow position:chr8:39116360-39116172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):14, 107

               
               
               Conread position:217-405
               
               
               Cow position:chr8:26147799-26147606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):101, 138

               
               
               Conread position:217-420
               
               
               Cow position:chr8:13118594-13118381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:217-420
               
               
               Cow position:chr8:47057442-47057648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):102, 11

               
               
               Conread position:217-420
               
               
               Cow position:chr8:50024738-50024947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):101, 54

               
               
               Conread position:217-444
               
               
               Cow position:chr8:55454887-55454655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):94, 135

               
               
               Conread position:217-445
               
               
               Cow position:chr8:24870581-24870821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):101, 142

               
               
               Conread position:217-445
               
               
               Cow position:chr8:39329632-39329870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):20, 144

               
               
               Conread position:217-539
               
               
               Cow position:chr8:55096099-55095777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):22, 106

               
               
               Conread position:217-584
               
               
               Cow position:chr8:48482577-48482965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:262
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):50, 150

               
               
               Conread position:217-586
               
               
               Cow position:chr8:11964516-11964147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):107, 76

               
               
               Conread position:217-624
               
               
               Cow position:chr8:23136509-23136938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:287
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):20, 147

               
               
               Conread position:217-624
               
               
               Cow position:chr8:37215656-37215247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:275
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):16, 133

               
               
               Conread position:217-629
               
               
               Cow position:chr8:8323641-8324057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:290
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):46, 135

               
               
               Conread position:217-632
               
               
               Cow position:chr8:16938256-16938648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:271
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):301, 102

               
               
               Conread position:217-632
               
               
               Cow position:chr8:24371489-24371915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:283
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):53, 15

               
               
               Conread position:217-632
               
               
               Cow position:chr8:28322200-28321776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 145

               
               
               Conread position:217-632
               
               
               Cow position:chr8:39592813-39592387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 11

               
               
               Conread position:217-650
               
               
               Cow position:chr8:6681701-6682139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:308
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):14, 147

               
               
               Conread position:218-326
               
               
               Cow position:chr8:36565422-36565313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:91
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:218-326
               
               
               Cow position:chr8:38331292-38331183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:89
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:218-406
               
               
               Cow position:chr8:51160342-51160533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):103, 88

               
               
               Conread position:218-416
               
               
               Cow position:chr8:57389020-57388818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):16, 128

               
               
               Conread position:218-420
               
               
               Cow position:chr8:4655918-4656124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):81, 126

               
               
               Conread position:218-420
               
               
               Cow position:chr8:49305524-49305733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):102, 197

               
               
               Conread position:218-421
               
               
               Cow position:chr8:6184013-6184226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):98, 23

               
               
               Conread position:218-436
               
               
               Cow position:chr8:52870406-52870178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):19, 139

               
               
               Conread position:218-438
               
               
               Cow position:chr8:20105647-20105879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):108, 141

               
               
               Conread position:218-451
               
               
               Cow position:chr8:38643283-38643526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):19, 26

               
               
               Conread position:218-452
               
               
               Cow position:chr8:52308217-52308462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):108, 12

               
               
               Conread position:218-523
               
               
               Cow position:chr8:26305639-26305954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):101, 142

               
               
               Conread position:218-595
               
               
               Cow position:chr8:43112626-43112998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:257
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):25, 125

               
               
               Conread position:218-608
               
               
               Cow position:chr8:18376666-18377065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:262
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):98, 47

               
               
               Conread position:218-624
               
               
               Cow position:chr8:51661373-51661793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:280
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):60, 146

               
               
               Conread position:218-631
               
               
               Cow position:chr8:6816449-6816872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:290
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):19, 120

               
               
               Conread position:218-631
               
               
               Cow position:chr8:54303237-54302837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:279
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):11, 43

               
               
               Conread position:218-632
               
               
               Cow position:chr8:1297735-1297317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 19

               
               
               Conread position:218-632
               
               
               Cow position:chr8:10336822-10337227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:280
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):95, 10

               
               
               Conread position:218-632
               
               
               Cow position:chr8:11612772-11612348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 18

               
               
               Conread position:218-632
               
               
               Cow position:chr8:24512922-24513337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:294
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):99, 13

               
               
               Conread position:218-632
               
               
               Cow position:chr8:25628553-25628149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:270
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):19, 48

               
               
               Conread position:218-632
               
               
               Cow position:chr8:38572046-38572479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:283
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:218-632
               
               
               Cow position:chr8:47328574-47328144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:291
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):13, 141

               
               
               Conread position:218-632
               
               
               Cow position:chr8:56886517-56886124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:288
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):18, 43

               
               
               Conread position:218-633
               
               
               Cow position:chr8:9641590-9641153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:287
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):13, 174

               
               
               Conread position:218-637
               
               
               Cow position:chr8:36465417-36465002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:282
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):77, 134

               
               
               Conread position:219-326
               
               
               Cow position:chr8:10194290-10194183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:90
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:219-400
               
               
               Cow position:chr8:38790180-38789991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):100, 141

               
               
               Conread position:219-403
               
               
               Cow position:chr8:35816892-35817086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):13, 141

               
               
               Conread position:219-406
               
               
               Cow position:chr8:26881604-26881798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):95, 138

               
               
               Conread position:219-422
               
               
               Cow position:chr8:53624600-53624813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):62, 142

               
               
               Conread position:219-424
               
               
               Cow position:chr8:16216281-16216072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):97, 17

               
               
               Conread position:219-425
               
               
               Cow position:chr8:31767813-31768023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):21, 135

               
               
               Conread position:219-555
               
               
               Cow position:chr8:28228462-28228125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:243
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):94, 50

               
               
               Conread position:219-590
               
               
               Cow position:chr8:40280910-40280531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:243
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):93, 187

               
               
               Conread position:219-624
               
               
               Cow position:chr8:9168590-9168995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:275
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):34, 249

               
               
               Conread position:219-631
               
               
               Cow position:chr8:1024182-1023762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 11

               
               
               Conread position:219-631
               
               
               Cow position:chr8:20107573-20107984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:288
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):102, 10

               
               
               Conread position:219-632
               
               
               Cow position:chr8:1304131-1303706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 137

               
               
               Conread position:219-632
               
               
               Cow position:chr8:15390944-15391354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:283
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):19, 85

               
               
               Conread position:219-632
               
               
               Cow position:chr8:46235929-46235500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:289
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):85, 201

               
               
               Conread position:219-632
               
               
               Cow position:chr8:58183080-58183508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:286
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):8, 128

               
               
               Conread position:219-640
               
               
               Cow position:chr8:59056071-59056507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:288
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):33, 21

               
               
               Conread position:220-423
               
               
               Cow position:chr8:28509236-28509441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):93, 11

               
               
               Conread position:220-631
               
               
               Cow position:chr8:12796047-12795616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:295
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):58, 51

               
               
               Conread position:220-632
               
               
               Cow position:chr8:1620502-1620924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 51

               
               
               Conread position:220-632
               
               
               Cow position:chr8:42762215-42762626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 12

               
               
               Conread position:220-632
               
               
               Cow position:chr8:47170167-47169755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:286
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):101, 31

               
               
               Conread position:220-637
               
               
               Cow position:chr8:2775017-2774582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:298
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):11, 75

               
               
               Conread position:221-624
               
               
               Cow position:chr8:17046538-17046953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 142

               
               
               Conread position:221-631
               
               
               Cow position:chr8:21826518-21826948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 126

               
               
               Conread position:221-632
               
               
               Cow position:chr8:8134298-8134707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:274
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):20, 74

               
               
               Conread position:222-551
               
               
               Cow position:chr8:19474860-19475204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:235
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):108, 262

               
               
               Conread position:222-625
               
               
               Cow position:chr8:30463602-30463200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:269
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):38, 9

               
               
               Conread position:224-520
               
               
               Cow position:chr8:43940679-43940986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):95, 138

               
               
               Conread position:224-529
               
               
               Cow position:chr8:53552888-53552582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:203
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):74, 16

               
               
               Conread position:224-584
               
               
               Cow position:chr8:55897599-55897956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:246
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):9, 35

               
               
               Conread position:224-632
               
               
               Cow position:chr8:28221368-28221767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:264
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):14, 45

               
               
               Conread position:224-633
               
               
               Cow position:chr8:39181554-39181973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:293
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):7, 41

               
               
               Conread position:225-633
               
               
               Cow position:chr8:44437969-44437568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:273
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):201, 67

               
               
               Conread position:226-580
               
               
               Cow position:chr8:38711803-38711454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 116

               
               
               Conread position:227-603
               
               
               Cow position:chr8:55885187-55884806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:259
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):93, 244

               
               
               Conread position:228-383
               
               
               Cow position:chr8:33664113-33663956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):8, 123

               
               
               Conread position:228-405
               
               
               Cow position:chr8:8509908-8509724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):86, 129

               
               
               Conread position:228-405
               
               
               Cow position:chr8:26247380-26247560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):8, 66

               
               
               Conread position:228-419
               
               
               Cow position:chr8:24406427-24406624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):8, 65

               
               
               Conread position:228-419
               
               
               Cow position:chr8:24419072-24419260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):185, 78

               
               
               Conread position:228-420
               
               
               Cow position:chr8:34035887-34035691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):79, 116

               
               
               Conread position:228-539
               
               
               Cow position:chr8:19204228-19204550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):8, 132

               
               
               Conread position:228-613
               
               
               Cow position:chr8:5894141-5893763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:271
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):98, 36

               
               
               Conread position:228-616
               
               
               Cow position:chr8:29029077-29029470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:284
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):8, 196

               
               
               Conread position:228-620
               
               
               Cow position:chr8:61128487-61128893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:273
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):84, 115

               
               
               Conread position:228-631
               
               
               Cow position:chr8:10305499-10305108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:267
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):8, 57

               
               
               Conread position:228-632
               
               
               Cow position:chr8:1253181-1252754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:268
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):8, 130

               
               
               Conread position:228-632
               
               
               Cow position:chr8:6232684-6233097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 15

               
               
               Conread position:228-632
               
               
               Cow position:chr8:12058939-12058513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 15

               
               
               Conread position:228-632
               
               
               Cow position:chr8:20926411-20926836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 134

               
               
               Conread position:228-632
               
               
               Cow position:chr8:47751696-47752118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:284
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):8, 134

               
               
               Conread position:228-632
               
               
               Cow position:chr8:48776035-48775616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:280
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):8, 41

               
               
               Conread position:228-632
               
               
               Cow position:chr8:60455393-60454996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:263
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):8, 83

               
               
               Conread position:228-633
               
               
               Cow position:chr8:46842060-46842467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:269
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):8, 121

               
               
               Conread position:229-428
               
               
               Cow position:chr8:19785072-19784866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):9, 119

               
               
               Conread position:229-632
               
               
               Cow position:chr8:9681213-9681601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:265
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):185, 64

               
               
               Conread position:230-632
               
               
               Cow position:chr8:48512814-48513206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:281
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):184, 39

               
               
               Conread position:231-632
               
               
               Cow position:chr8:34478342-34477916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:288
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):51, 248

               
               
               Conread position:232-404
               
               
               Cow position:chr8:38993940-38993765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):51, 113

               
               
               Conread position:232-405
               
               
               Cow position:chr8:11216648-11216824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):81, 120

               
               
               Conread position:232-420
               
               
               Cow position:chr8:6478055-6477861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):84, 31

               
               
               Conread position:232-420
               
               
               Cow position:chr8:37559334-37559148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):182, 74

               
               
               Conread position:232-421
               
               
               Cow position:chr8:42378686-42378882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):89, 114

               
               
               Conread position:232-425
               
               
               Cow position:chr8:31265701-31265899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):83, 114

               
               
               Conread position:232-426
               
               
               Cow position:chr8:51524217-51524018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):85, 127

               
               
               Conread position:232-447
               
               
               Cow position:chr8:45664946-45664741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:232-483
               
               
               Cow position:chr8:61443009-61443264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:180
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):49, 111

               
               
               Conread position:232-539
               
               
               Cow position:chr8:61067494-61067185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):89, 22

               
               
               Conread position:232-546
               
               
               Cow position:chr8:6224232-6224548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):92, 31

               
               
               Conread position:232-593
               
               
               Cow position:chr8:59346030-59345662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):94, 34

               
               
               Conread position:232-595
               
               
               Cow position:chr8:32133474-32133108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:242
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):75, 224

               
               
               Conread position:232-619
               
               
               Cow position:chr8:38137616-38137235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:258
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):169, 34

               
               
               Conread position:232-621
               
               
               Cow position:chr8:50314970-50315354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:269
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):38, 116

               
               
               Conread position:232-624
               
               
               Cow position:chr8:15694268-15694671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:271
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):6, 38

               
               
               Conread position:232-624
               
               
               Cow position:chr8:43027464-43027851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:266
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):174, 70

               
               
               Conread position:232-625
               
               
               Cow position:chr8:37571493-37571901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 125

               
               
               Conread position:232-627
               
               
               Cow position:chr8:42145556-42145968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 133

               
               
               Conread position:232-630
               
               
               Cow position:chr8:60746854-60746446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:280
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):87, 127

               
               
               Conread position:232-631
               
               
               Cow position:chr8:35972059-35971646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:282
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):37, 141

               
               
               Conread position:232-632
               
               
               Cow position:chr8:4500698-4500290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 111

               
               
               Conread position:232-632
               
               
               Cow position:chr8:9942313-9942727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 117

               
               
               Conread position:232-632
               
               
               Cow position:chr8:10971045-10970628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:273
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:232-632
               
               
               Cow position:chr8:19642677-19642271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 123

               
               
               Conread position:232-632
               
               
               Cow position:chr8:20102553-20102971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:294
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):84, 197

               
               
               Conread position:232-632
               
               
               Cow position:chr8:22274073-22273657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 127

               
               
               Conread position:232-632
               
               
               Cow position:chr8:25455597-25455205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:281
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):218, 47

               
               
               Conread position:232-632
               
               
               Cow position:chr8:26626081-26625675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 127

               
               
               Conread position:232-632
               
               
               Cow position:chr8:32620769-32621196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:287
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):38, 122

               
               
               Conread position:232-632
               
               
               Cow position:chr8:36060045-36059641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:277
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):93, 53

               
               
               Conread position:232-632
               
               
               Cow position:chr8:37123157-37122772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:270
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):200, 67

               
               
               Conread position:232-632
               
               
               Cow position:chr8:38894229-38893810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:284
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):67, 31

               
               
               Conread position:232-632
               
               
               Cow position:chr8:46743105-46743534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:291
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):84, 256

               
               
               Conread position:232-632
               
               
               Cow position:chr8:48527754-48528157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:271
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):89, 34

               
               
               Conread position:232-632
               
               
               Cow position:chr8:53383605-53383205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:284
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):92, 27

               
               
               Conread position:232-632
               
               
               Cow position:chr8:55716963-55716556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:269
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):6, 216

               
               
               Conread position:232-638
               
               
               Cow position:chr8:18870094-18869683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:296
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):87, 119

               
               
               Conread position:232-645
               
               
               Cow position:chr8:948738-948330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:270
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):70, 59

               
               
               Conread position:232-645
               
               
               Cow position:chr8:18730668-18730224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:300
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):69, 240

               
               
               Conread position:232-645
               
               
               Cow position:chr8:43687767-43687328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:285
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):95, 129

               
               
               Conread position:233-568
               
               
               Cow position:chr8:37391149-37391492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:226
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):82, 182

               
               
               Conread position:233-595
               
               
               Cow position:chr8:54436801-54437176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:248
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):77, 128

               
               
               Conread position:233-631
               
               
               Cow position:chr8:24867537-24867944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:265
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):77, 31

               
               
               Conread position:233-632
               
               
               Cow position:chr8:59250933-59250526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:269
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):66, 104

               
               
               Conread position:234-483
               
               
               Cow position:chr8:44700188-44699933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):64, 21

               
               
               Conread position:234-547
               
               
               Cow position:chr8:52657367-52657058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):79, 120

               
               
               Conread position:234-627
               
               
               Cow position:chr8:61537641-61538038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:270
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):75, 90

               
               
               Conread position:234-632
               
               
               Cow position:chr8:18831954-18831538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 115

               
               
               Conread position:234-632
               
               
               Cow position:chr8:42794105-42794512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:277
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):71, 236

               
               
               Conread position:235-539
               
               
               Cow position:chr8:46874757-46874448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:218
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):72, 120

               
               
               Conread position:235-580
               
               
               Cow position:chr8:935913-935560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:256
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):84, 58

               
               
               Conread position:235-631
               
               
               Cow position:chr8:16144340-16143926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:285
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):93, 116

               
               
               Conread position:235-632
               
               
               Cow position:chr8:31297473-31297069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:276
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):75, 26

               
               
               Conread position:236-420
               
               
               Cow position:chr8:11864157-11863964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):83, 120

               
               
               Conread position:236-428
               
               
               Cow position:chr8:37443729-37443536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):36, 105

               
               
               Conread position:236-448
               
               
               Cow position:chr8:38816600-38816381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):83, 35

               
               
               Conread position:236-539
               
               
               Cow position:chr8:572956-573255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):174, 104

               
               
               Conread position:236-598
               
               
               Cow position:chr8:39807806-39807431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:242
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):85, 113

               
               
               Conread position:236-611
               
               
               Cow position:chr8:37347243-37347633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:274
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):59, 30

               
               
               Conread position:236-628
               
               
               Cow position:chr8:19995525-19995927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:275
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):77, 182

               
               
               Conread position:236-628
               
               
               Cow position:chr8:47135817-47136207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:271
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):89, 48

               
               
               Conread position:236-628
               
               
               Cow position:chr8:58520491-58520103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:275
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):167, 62

               
               
               Conread position:236-632
               
               
               Cow position:chr8:2830240-2829835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:261
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):58, 52

               
               
               Conread position:236-632
               
               
               Cow position:chr8:3445891-3446283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 213

               
               
               Conread position:236-632
               
               
               Cow position:chr8:55305269-55304876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:263
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):97, 66

               
               
               Conread position:236-637
               
               
               Cow position:chr8:55122230-55122658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:280
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):79, 122

               
               
               Conread position:237-420
               
               
               Cow position:chr8:3423211-3423021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):82, 122

               
               
               Conread position:237-603
               
               
               Cow position:chr8:9509691-9510059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:250
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):66, 116

               
               
               Conread position:237-615
               
               
               Cow position:chr8:47283862-47284246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:275
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):66, 143

               
               
               Conread position:237-617
               
               
               Cow position:chr8:783521-783900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:256
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):257, 48

               
               
               Conread position:237-629
               
               
               Cow position:chr8:25349907-25349512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:260
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):171, 72

               
               
               Conread position:238-632
               
               
               Cow position:chr8:642387-642756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:273
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):165, 19

               
               
               Conread position:239-632
               
               
               Cow position:chr8:57984645-57985030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:244
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):175, 112

               
               
               Conread position:239-637
               
               
               Cow position:chr8:8097062-8097471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 16

               
               
               Conread position:240-632
               
               
               Cow position:chr8:60488438-60488825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):182, 10

               
               
               Conread position:242-565
               
               
               Cow position:chr8:20657180-20657503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:225
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):161, 51

               
               
               Conread position:242-600
               
               
               Cow position:chr8:39845805-39845455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):153, 27

               
               
               Conread position:242-632
               
               
               Cow position:chr8:36375322-36375711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 90

               
               
               Conread position:242-645
               
               
               Cow position:chr8:18057929-18057524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:274
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):214, 65

               
               
               Conread position:243-621
               
               
               Cow position:chr8:54211049-54210697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:256
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):196, 59

               
               
               Conread position:243-628
               
               
               Cow position:chr8:13976070-13975698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:256
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):189, 56

               
               
               Conread position:243-632
               
               
               Cow position:chr8:30324516-30324128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:273
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):50, 78

               
               
               Conread position:244-632
               
               
               Cow position:chr8:10297560-10297938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:268
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):209, 59

               
               
               Conread position:245-632
               
               
               Cow position:chr8:33406658-33407047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:266
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):118, 58

               
               
               Conread position:245-643
               
               
               Cow position:chr8:24871687-24872080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:277
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):100, 18

               
               
               Conread position:246-473
               
               
               Cow position:chr8:58598833-58598600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):75, 106

               
               
               Conread position:246-510
               
               
               Cow position:chr8:16505684-16505418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):78, 41

               
               
               Conread position:246-629
               
               
               Cow position:chr8:53429962-53429574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 47

               
               
               Conread position:246-632
               
               
               Cow position:chr8:2163725-2164106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 58

               
               
               Conread position:246-632
               
               
               Cow position:chr8:59478224-59477823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:259
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):73, 9

               
               
               Conread position:246-635
               
               
               Cow position:chr8:1012158-1011774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:270
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):164, 15

               
               
               Conread position:246-643
               
               
               Cow position:chr8:11277909-11278324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:292
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):68, 17

               
               
               Conread position:246-645
               
               
               Cow position:chr8:1999828-1999409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 113

               
               
               Conread position:246-645
               
               
               Cow position:chr8:41626917-41627333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:278
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):77, 117

               
               
               Conread position:246-647
               
               
               Cow position:chr8:50310656-50311059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 109

               
               
               Conread position:247-631
               
               
               Cow position:chr8:10456657-10456269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:250
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):74, 28

               
               
               Conread position:247-631
               
               
               Cow position:chr8:18081723-18081338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 90

               
               
               Conread position:250-615
               
               
               Cow position:chr8:21212978-21212632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:256
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):71, 64

               
               
               Conread position:251-610
               
               
               Cow position:chr8:60127037-60126675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):58, 103

               
               
               Conread position:255-632
               
               
               Cow position:chr8:36249231-36249620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:258
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):66, 93

               
               
               Conread position:257-632
               
               
               Cow position:chr8:29765453-29765056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:268
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):70, 94

               
               
               Conread position:261-632
               
               
               Cow position:chr8:35580455-35580833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 220

               
               
               Conread position:261-659
               
               
               Cow position:chr8:47549764-47550162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:268
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):53, 42

               
               
               Conread position:263-643
               
               
               Cow position:chr8:9461020-9461418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:263
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):48, 92

               
               
               Conread position:266-584
               
               
               Cow position:chr8:9907295-9906963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:221
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):44, 96

               
               
               Conread position:266-645
               
               
               Cow position:chr8:11606508-11606122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:269
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):46, 88

               
               
               Conread position:271-583
               
               
               Cow position:chr8:53633059-53633381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):132, 69

               
               
               Conread position:276-617
               
               
               Cow position:chr8:19011634-19011974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:244
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):49, 67

               
               
               Conread position:276-632
               
               
               Cow position:chr8:28294702-28295044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:243
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):132, 31

               
               
               Conread position:277-632
               
               
               Cow position:chr8:38780866-38780511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:236
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):44, 66

               
               
               Conread position:280-632
               
               
               Cow position:chr8:20307140-20306784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:255
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):47, 114

               
               
               Conread position:287-631
               
               
               Cow position:chr8:33586363-33586013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:228
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):23, 64

               
               
               Conread position:288-632
               
               
               Cow position:chr8:32094020-32093683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:217
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):115, 22

               
               
               Conread position:288-645
               
               
               Cow position:chr8:31762673-31763028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:244
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):49, 22

               
               
               Conread position:294-632
               
               
               Cow position:chr8:47462002-47461665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:251
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):19, 49

               
               
               Conread position:296-632
               
               
               Cow position:chr8:53214183-53214523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:226
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):31, 116

               
               
               Conread position:298-629
               
               
               Cow position:chr8:57389420-57389093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):118, 43

               
               
               Conread position:298-632
               
               
               Cow position:chr8:6484792-6485135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:228
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):23, 110

               
               
               Conread position:298-632
               
               
               Cow position:chr8:21077721-21077395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):11, 44

               
               
               Conread position:298-632
               
               
               Cow position:chr8:53642295-53642622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:229
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):36, 17

               
               
               Conread position:299-632
               
               
               Cow position:chr8:11078995-11078671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):199, 47

               
               
               Conread position:299-632
               
               
               Cow position:chr8:20157622-20157960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):14, 44

               
               
               Conread position:299-632
               
               
               Cow position:chr8:24980837-24980497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):11, 109

               
               
               Conread position:299-632
               
               
               Cow position:chr8:57208337-57208679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):26, 163

               
               
               Conread position:299-633
               
               
               Cow position:chr8:1394366-1394025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:231
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):48, 21

               
               
               Conread position:300-567
               
               
               Cow position:chr8:25388274-25388008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):13, 44

               
               
               Conread position:300-632
               
               
               Cow position:chr8:6531552-6531218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):20, 158

               
               
               Conread position:301-632
               
               
               Cow position:chr8:20837253-20836928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:228
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):197, 20

               
               
               Conread position:303-632
               
               
               Cow position:chr8:35504102-35504435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 30

               
               
               Conread position:305-631
               
               
               Cow position:chr8:26304261-26304600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:237
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):12, 8

               
               
               Conread position:311-632
               
               
               Cow position:chr8:39630896-39630571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):84, 9

               
               
               Conread position:316-645
               
               
               Cow position:chr8:45244913-45245230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:235
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):92, 11

               
               
               Conread position:316-645
               
               
               Cow position:chr8:50709173-50708835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):34, 25

               
               
               Conread position:319-628
               
               
               Cow position:chr8:39174125-39174445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:319-629
               
               
               Cow position:chr8:53558492-53558799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):47, 103

               
               
               Conread position:319-631
               
               
               Cow position:chr8:6076437-6076739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):24, 29

               
               
               Conread position:319-631
               
               
               Cow position:chr8:35991167-35990848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:209
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):64, 117

               
               
               Conread position:319-632
               
               
               Cow position:chr8:18207026-18207346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):179, 92

               
               
               Conread position:319-632
               
               
               Cow position:chr8:23179428-23179747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):181, 0

               
               
               Conread position:319-632
               
               
               Cow position:chr8:29624852-29625161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:217
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):91, 132

               
               
               Conread position:319-632
               
               
               Cow position:chr8:33432376-33432059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:214
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):75, 157

               
               
               Conread position:319-632
               
               
               Cow position:chr8:38681995-38681679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):82, 95

               
               
               Conread position:320-626
               
               
               Cow position:chr8:21222307-21222004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):94, 29

               
               
               Conread position:320-628
               
               
               Cow position:chr8:45127587-45127897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):16, 24

               
               
               Conread position:320-631
               
               
               Cow position:chr8:25591930-25591620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):223, 24

               
               
               Conread position:320-632
               
               
               Cow position:chr8:3704738-3704423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):88, 21

               
               
               Conread position:320-632
               
               
               Cow position:chr8:24390080-24390398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:228
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):14, 22

               
               
               Conread position:320-633
               
               
               Cow position:chr8:9705717-9705407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):72, 123

               
               
               Conread position:321-626
               
               
               Cow position:chr8:4552634-4552963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:226
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):87, 27

               
               
               Conread position:321-631
               
               
               Cow position:chr8:5177299-5176986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:213
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):87, 32

               
               
               Conread position:321-632
               
               
               Cow position:chr8:21382576-21382894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):85, 96

               
               
               Conread position:321-635
               
               
               Cow position:chr8:10263050-10263368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):13, 21

               
               
               Conread position:322-632
               
               
               Cow position:chr8:2897503-2897820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):47, 27

               
               
               Conread position:322-632
               
               
               Cow position:chr8:4940207-4940509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:227
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):174, 19

               
               
               Conread position:323-585
               
               
               Cow position:chr8:37882457-37882194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:188
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):80, 20

               
               
               Conread position:323-632
               
               
               Cow position:chr8:20339387-20339086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:222
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):141, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr8:28884949-28884627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):85, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr8:30244735-30245028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):220, 19

               
               
               Conread position:323-632
               
               
               Cow position:chr8:47664794-47665105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:221
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):82, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr8:58417794-58417490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):233, 18

               
               
               Conread position:323-645
               
               
               Cow position:chr8:579969-580291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):23, 18

               
               
               Conread position:324-629
               
               
               Cow position:chr8:43167916-43168221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):11, 18

               
               
               Conread position:325-624
               
               
               Cow position:chr8:16972417-16972723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):83, 28

               
               
               Conread position:325-632
               
               
               Cow position:chr8:50937888-50937583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):73, 24

               
               
               Conread position:333-623
               
               
               Cow position:chr8:22756123-22755831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):75, 55

               
               
               Conread position:333-628
               
               
               Cow position:chr8:58377477-58377759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):80, 8

               
               
               Conread position:333-629
               
               
               Cow position:chr8:33693608-33693305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):76, 8

               
               
               Conread position:338-631
               
               
               Cow position:chr8:49687120-49687422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):76, 46

               
               
               Conread position:340-632
               
               
               Cow position:chr8:3339175-3338887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):55, 65

               
               
               Conread position:340-632
               
               
               Cow position:chr8:20684068-20683773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):66, 115

               
               
               Conread position:340-632
               
               
               Cow position:chr8:25871823-25871525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:202
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):74, 24

               
               
               Conread position:340-632
               
               
               Cow position:chr8:36505471-36505168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):122, 27

               
               
               Conread position:346-632
               
               
               Cow position:chr8:1473153-1472862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:200
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):49, 67

               
               
               Conread position:350-632
               
               
               Cow position:chr8:798190-797913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):59, 26

               
               
               Conread position:351-631
               
               
               Cow position:chr8:18049679-18049404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):63, 56

               
               
               Conread position:351-632
               
               
               Cow position:chr8:15479341-15479633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:200
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):54, 109

               
               
               Conread position:351-632
               
               
               Cow position:chr8:31776276-31775984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):45, 120

               
               
               Conread position:352-632
               
               
               Cow position:chr8:59043014-59043301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):65, 55

               
               
               Conread position:355-628
               
               
               Cow position:chr8:30892921-30893194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):33, 56

               
               
               Conread position:355-631
               
               
               Cow position:chr8:59438200-59438482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):53, 13

               
               
               Conread position:358-633
               
               
               Cow position:chr8:8010980-8010703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:191
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):74, 9

               
               
               Conread position:360-622
               
               
               Cow position:chr8:1107113-1107381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):55, 50

               
               
               Conread position:361-632
               
               
               Cow position:chr8:39144819-39144563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):72, 118

               
               
               Conread position:361-645
               
               
               Cow position:chr8:5224970-5225249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:198
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):137, 92

               
               
               Conread position:362-632
               
               
               Cow position:chr8:16487228-16487506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:364-630
               
               
               Cow position:chr8:20563692-20563960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):101, 43

               
               
               Conread position:366-631
               
               
               Cow position:chr8:9315972-9315712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:186
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):48, 41

               
               
               Conread position:366-632
               
               
               Cow position:chr8:7064217-7064474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):114, 43

               
               
               Conread position:366-645
               
               
               Cow position:chr8:688195-688465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):102, 19

               
               
               Conread position:367-630
               
               
               Cow position:chr8:25579606-25579340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):35, 104

               
               
               Conread position:373-632
               
               
               Cow position:chr8:4744834-4745099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):32, 43

               
               
               Conread position:379-631
               
               
               Cow position:chr8:45689842-45690099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):29, 80

               
               
               Conread position:381-632
               
               
               Cow position:chr8:45493934-45493681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:184
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):23, 74

               
               
               Conread position:382-632
               
               
               Cow position:chr8:225316-225564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):32, 13

               
               
               Conread position:382-632
               
               
               Cow position:chr8:9517123-9517380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:177
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):13, 196

               
               
               Conread position:382-632
               
               
               Cow position:chr8:24471703-24471448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:177
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):13, 77

               
               
               Conread position:385-632
               
               
               Cow position:chr8:53485750-53485507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):23, 70

               
               
               Conread position:390-631
               
               
               Cow position:chr8:51319014-51318772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):17, 23

               
               
               Conread position:394-631
               
               
               Cow position:chr8:51579307-51579069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):20, 13

               
               
               Conread position:395-632
               
               
               Cow position:chr8:37809585-37809827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):30, 58

               
               
               Conread position:396-632
               
               
               Cow position:chr8:28412575-28412811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):20, 65

               
               
               Conread position:399-632
               
               
               Cow position:chr8:20112149-20111911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):15, 54

               
               
               Conread position:401-622
               
               
               Cow position:chr8:24952379-24952151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):41, 123

               
               
               Conread position:403-632
               
               
               Cow position:chr8:28509454-28509691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):65, 45

               
               
               Conread position:408-632
               
               
               Cow position:chr8:39475468-39475240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):15, 51

               
               
               Conread position:411-629
               
               
               Cow position:chr8:39544804-39544578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):83, 21

               
               
               Conread position:411-632
               
               
               Cow position:chr8:5484848-5485080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:411-632
               
               
               Cow position:chr8:10802143-10802368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):60, 15

               
               
               Conread position:411-632
               
               
               Cow position:chr8:36397897-36398115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):89, 20

               
               
               Conread position:411-632
               
               
               Cow position:chr8:37148143-37147920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):37, 45

               
               
               Conread position:411-632
               
               
               Cow position:chr8:48437380-48437599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):27, 51

               
               
               Conread position:411-632
               
               
               Cow position:chr8:56581186-56581397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):37, 89

               
               
               Conread position:412-632
               
               
               Cow position:chr8:24363920-24364141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):86, 36

               
               
               Conread position:412-645
               
               
               Cow position:chr8:53964726-53964952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):131, 41

               
               
               Conread position:414-632
               
               
               Cow position:chr8:32295710-32295938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):84, 42

               
               
               Conread position:421-632
               
               
               Cow position:chr8:4205936-4205726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):79, 30

               
               
               Conread position:443-632
               
               
               Cow position:chr8:11217072-11217268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):57, 11

               
               
               Conread position:443-632
               
               
               Cow position:chr8:39555972-39555778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):22, 12

               
               
               Conread position:444-632
               
               
               Cow position:chr8:54306068-54305884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):94, 7

               
               
               Conread position:455-632
               
               
               Cow position:chr8:21961229-21961049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:458-631
               
               
               Cow position:chr8:23026675-23026505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):126, 43

               
               
               Conread position:458-633
               
               
               Cow position:chr8:36648478-36648661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:463-632
               
               
               Cow position:chr8:31253784-31253612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:465-633
               
               
               Cow position:chr8:6795423-6795246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:467-632
               
               
               Cow position:chr8:46623572-46623737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):33, 105

               
               
               Conread position:470-632
               
               
               Cow position:chr8:24832339-24832174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:470-632
               
               
               Cow position:chr8:52308761-52308925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:471-632
               
               
               Cow position:chr8:54325693-54325533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):23, 9

               
               
               Conread position:471-645
               
               
               Cow position:chr8:1834886-1834709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:476-632
               
               
               Cow position:chr8:13922386-13922234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):20, 41

               
               
               Conread position:476-632
               
               
               Cow position:chr8:51493070-51493230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):24, 105

               
               
               Conread position:477-632
               
               
               Cow position:chr8:35966071-35966233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:478-632
               
               
               Cow position:chr8:25083234-25083070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:478-632
               
               
               Cow position:chr8:41264263-41264107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):15, 67

               
               
               Conread position:480-632
               
               
               Cow position:chr8:29917402-29917553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):136, 13

               
               
               Conread position:481-632
               
               
               Cow position:chr8:40743397-40743549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):17, 67

               
               
               Conread position:481-633
               
               
               Cow position:chr8:1327387-1327233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:485-633
               
               
               Cow position:chr8:33585112-33584961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:492-632
               
               
               Cow position:chr8:17669798-17669942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:492-632
               
               
               Cow position:chr8:24235073-24234928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:493-631
               
               
               Cow position:chr8:38464957-38464815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:493-631
               
               
               Cow position:chr8:44000547-44000687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):44, 37

               
               
               Conread position:493-631
               
               
               Cow position:chr8:55214008-55213862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:493-632
               
               
               Cow position:chr8:3887306-3887161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:493-632
               
               
               Cow position:chr8:4821287-4821425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:110
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:493-632
               
               
               Cow position:chr8:5979881-5979743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:111
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:493-632
               
               
               Cow position:chr8:10081860-10081728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:114
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:493-632
               
               
               Cow position:chr8:24905439-24905295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:494-639
               
               
               Cow position:chr8:57397594-57397738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:495-629
               
               
               Cow position:chr8:4563486-4563624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:495-630
               
               
               Cow position:chr8:39039967-39039830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):92, 64

               
               
               Conread position:495-631
               
               
               Cow position:chr8:39721603-39721469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:102
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr8:2814561-2814420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:111
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr8:2953570-2953435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr8:4591135-4591272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr8:4924506-4924365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:112
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr8:28185717-28185856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):89, 11

               
               
               Conread position:495-632
               
               
               Cow position:chr8:32491494-32491356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr8:32988681-32988546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr8:47861002-47861136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr8:54572583-54572444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr8:55926136-55925999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):91, 30

               
               
               Conread position:495-632
               
               
               Cow position:chr8:56824075-56824212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:105
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr8:57045557-57045698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:495-635
               
               
               Cow position:chr8:10699520-10699662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):44, 131

               
               
               Conread position:495-645
               
               
               Cow position:chr8:17103482-17103632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:495-645
               
               
               Cow position:chr8:21268586-21268735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:495-650
               
               
               Cow position:chr8:10176203-10176362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:496-626
               
               
               Cow position:chr8:53587527-53587660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):31, 119

               
               
               Conread position:496-630
               
               
               Cow position:chr8:54269073-54269204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:496-632
               
               
               Cow position:chr8:554249-554385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:496-632
               
               
               Cow position:chr8:36055464-36055604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):70, 19

               
               
               Conread position:496-632
               
               
               Cow position:chr8:37433562-37433422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:497-645
               
               
               Cow position:chr8:844001-844153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):32, 133

               
               
               Conread position:498-632
               
               
               Cow position:chr8:33400259-33400393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):17, 85

               
               
               Conread position:499-632
               
               
               Cow position:chr8:4559125-4559255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):44, 84

               
               
               Conread position:499-632
               
               
               Cow position:chr8:61841922-61841785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):16, 32

               
               
               Conread position:501-632
               
               
               Cow position:chr8:2621659-2621521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:501-632
               
               
               Cow position:chr8:24201838-24201703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:103
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:503-633
               
               
               Cow position:chr8:16031644-16031772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:506-632
               
               
               Cow position:chr8:42112872-42113001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:108
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):78, 40

               
               
               Conread position:550-645
               
               
               Cow position:chr8:48955799-48955704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:96
               
               
               Alignm identity:81
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:188-438
               
               
               Cow position:chr9:5900164-5899916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):136, 16

               
               
               Conread position:194-405
               
               
               Cow position:chr9:61286550-61286771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):23, 157

               
               
               Conread position:194-449
               
               
               Cow position:chr9:23956183-23955923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):125, 12

               
               
               Conread position:196-594
               
               
               Cow position:chr9:4341364-4340969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:255
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):41, 216

               
               
               Conread position:199-616
               
               
               Cow position:chr9:42264015-42264444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 103

               
               
               Conread position:202-571
               
               
               Cow position:chr9:40215045-40215421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:259
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):29, 147

               
               
               Conread position:204-424
               
               
               Cow position:chr9:34917373-34917157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:205-632
               
               
               Cow position:chr9:33940399-33940846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:301
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):19, 47

               
               
               Conread position:206-420
               
               
               Cow position:chr9:2397619-2397833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):103, 20

               
               
               Conread position:206-632
               
               
               Cow position:chr9:52406973-52407409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 61

               
               
               Conread position:207-590
               
               
               Cow position:chr9:10650487-10650104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:279
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):15, 63

               
               
               Conread position:208-326
               
               
               Cow position:chr9:52651687-52651568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:94
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:208-632
               
               
               Cow position:chr9:51566691-51566247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 24

               
               
               Conread position:209-328
               
               
               Cow position:chr9:36693488-36693370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:94
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:209-593
               
               
               Cow position:chr9:51721079-51720703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:265
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):198, 22

               
               
               Conread position:209-632
               
               
               Cow position:chr9:26085864-26086306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:296
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):79, 159

               
               
               Conread position:210-608
               
               
               Cow position:chr9:11123667-11123277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 28

               
               
               Conread position:210-624
               
               
               Cow position:chr9:20406462-20406869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:297
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):9, 24

               
               
               Conread position:211-417
               
               
               Cow position:chr9:35832803-35832598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):98, 20

               
               
               Conread position:211-631
               
               
               Cow position:chr9:52130825-52131256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:300
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):140, 16

               
               
               Conread position:211-632
               
               
               Cow position:chr9:14975118-14974687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 17

               
               
               Conread position:211-632
               
               
               Cow position:chr9:47500388-47499962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:287
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):194, 17

               
               
               Conread position:212-632
               
               
               Cow position:chr9:56453156-56453571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:283
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):16, 21

               
               
               Conread position:213-629
               
               
               Cow position:chr9:10118857-10118429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:285
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):26, 196

               
               
               Conread position:213-645
               
               
               Cow position:chr9:34697492-34697043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:311
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):23, 147

               
               
               Conread position:214-405
               
               
               Cow position:chr9:17785757-17785557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):29, 17

               
               
               Conread position:214-436
               
               
               Cow position:chr9:52510927-52511159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):105, 146

               
               
               Conread position:214-443
               
               
               Cow position:chr9:52763942-52763717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):23, 50

               
               
               Conread position:214-579
               
               
               Cow position:chr9:20579773-20579420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:242
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):98, 13

               
               
               Conread position:214-586
               
               
               Cow position:chr9:28452359-28451965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:262
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):6, 72

               
               
               Conread position:214-592
               
               
               Cow position:chr9:12910590-12910200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:258
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):19, 237

               
               
               Conread position:215-403
               
               
               Cow position:chr9:40221373-40221179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):16, 140

               
               
               Conread position:215-420
               
               
               Cow position:chr9:25375921-25375710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):21, 51

               
               
               Conread position:215-420
               
               
               Cow position:chr9:35295507-35295716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):21, 128

               
               
               Conread position:215-438
               
               
               Cow position:chr9:48017954-48017728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):192, 106

               
               
               Conread position:215-531
               
               
               Cow position:chr9:34410580-34410258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):58, 53

               
               
               Conread position:215-546
               
               
               Cow position:chr9:26102547-26102877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):139, 16

               
               
               Conread position:215-624
               
               
               Cow position:chr9:20815679-20816080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:283
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):87, 155

               
               
               Conread position:215-631
               
               
               Cow position:chr9:38792830-38793257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:293
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):110, 22

               
               
               Conread position:215-632
               
               
               Cow position:chr9:6839803-6840250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 144

               
               
               Conread position:215-632
               
               
               Cow position:chr9:31625941-31626388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:304
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):16, 147

               
               
               Conread position:216-333
               
               
               Cow position:chr9:63710971-63711088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:93
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:216-382
               
               
               Cow position:chr9:19657160-19656990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):103, 47

               
               
               Conread position:216-402
               
               
               Cow position:chr9:61019551-61019356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):111, 142

               
               
               Conread position:216-406
               
               
               Cow position:chr9:58255311-58255503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):99, 48

               
               
               Conread position:216-412
               
               
               Cow position:chr9:8645078-8645282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):105, 34

               
               
               Conread position:216-414
               
               
               Cow position:chr9:28315239-28315445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):96, 12

               
               
               Conread position:216-418
               
               
               Cow position:chr9:11271529-11271333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:216-420
               
               
               Cow position:chr9:33347665-33347466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):198, 15

               
               
               Conread position:216-420
               
               
               Cow position:chr9:42586733-42586532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):195, 16

               
               
               Conread position:216-420
               
               
               Cow position:chr9:48808964-48809162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):198, 15

               
               
               Conread position:216-428
               
               
               Cow position:chr9:8992367-8992143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:161
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:216-519
               
               
               Cow position:chr9:48046349-48046665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):101, 144

               
               
               Conread position:216-529
               
               
               Cow position:chr9:13744117-13743797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):103, 12

               
               
               Conread position:216-615
               
               
               Cow position:chr9:42061903-42062338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 142

               
               
               Conread position:216-617
               
               
               Cow position:chr9:26057613-26057214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:282
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):93, 13

               
               
               Conread position:216-624
               
               
               Cow position:chr9:36410534-36410121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:289
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):110, 15

               
               
               Conread position:216-624
               
               
               Cow position:chr9:40303321-40302894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:277
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):109, 131

               
               
               Conread position:216-628
               
               
               Cow position:chr9:35028350-35027938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 12

               
               
               Conread position:216-629
               
               
               Cow position:chr9:30137937-30138362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 140

               
               
               Conread position:216-630
               
               
               Cow position:chr9:45141783-45141368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 239

               
               
               Conread position:216-630
               
               
               Cow position:chr9:50977442-50977009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:299
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):111, 135

               
               
               Conread position:216-631
               
               
               Cow position:chr9:52505496-52505065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:291
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):23, 146

               
               
               Conread position:216-632
               
               
               Cow position:chr9:9199957-9199545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:284
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):46, 55

               
               
               Conread position:216-632
               
               
               Cow position:chr9:26279359-26278934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:293
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):53, 238

               
               
               Conread position:216-632
               
               
               Cow position:chr9:28747703-28747283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 16

               
               
               Conread position:216-632
               
               
               Cow position:chr9:34286613-34287033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:291
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):91, 20

               
               
               Conread position:216-632
               
               
               Cow position:chr9:34902284-34901876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:289
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):21, 95

               
               
               Conread position:216-632
               
               
               Cow position:chr9:48563893-48564334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:299
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):81, 20

               
               
               Conread position:216-632
               
               
               Cow position:chr9:53258245-53257821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:287
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):15, 202

               
               
               Conread position:216-633
               
               
               Cow position:chr9:6192643-6192219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:281
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):105, 270

               
               
               Conread position:216-635
               
               
               Cow position:chr9:44709647-44710067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 34

               
               
               Conread position:216-645
               
               
               Cow position:chr9:48118863-48118450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:289
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):99, 52

               
               
               Conread position:217-403
               
               
               Cow position:chr9:41785037-41785217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:217-405
               
               
               Cow position:chr9:34196009-34196199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):102, 42

               
               
               Conread position:217-411
               
               
               Cow position:chr9:20017212-20017413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):38, 50

               
               
               Conread position:217-414
               
               
               Cow position:chr9:34276398-34276190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):111, 142

               
               
               Conread position:217-414
               
               
               Cow position:chr9:52257645-52257443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):90, 137

               
               
               Conread position:217-416
               
               
               Cow position:chr9:22723771-22723561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):16, 53

               
               
               Conread position:217-416
               
               
               Cow position:chr9:41470284-41470076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):98, 12

               
               
               Conread position:217-428
               
               
               Cow position:chr9:44584417-44584629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):190, 14

               
               
               Conread position:217-438
               
               
               Cow position:chr9:12786660-12786427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):92, 15

               
               
               Conread position:217-446
               
               
               Cow position:chr9:33101290-33101068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:217-539
               
               
               Cow position:chr9:4263273-4262947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):97, 30

               
               
               Conread position:217-543
               
               
               Cow position:chr9:32670131-32669798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:244
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):100, 46

               
               
               Conread position:217-562
               
               
               Cow position:chr9:26477025-26477385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 145

               
               
               Conread position:217-584
               
               
               Cow position:chr9:41728074-41728446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:252
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):17, 156

               
               
               Conread position:217-594
               
               
               Cow position:chr9:58448311-58447922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:268
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):97, 131

               
               
               Conread position:217-624
               
               
               Cow position:chr9:62724356-62724777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:287
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):16, 86

               
               
               Conread position:217-628
               
               
               Cow position:chr9:20322278-20321881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:293
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):26, 58

               
               
               Conread position:217-631
               
               
               Cow position:chr9:58979218-58979639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 181

               
               
               Conread position:217-632
               
               
               Cow position:chr9:8723609-8724035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:284
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):27, 126

               
               
               Conread position:217-637
               
               
               Cow position:chr9:46981404-46980990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:288
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):92, 11

               
               
               Conread position:217-643
               
               
               Cow position:chr9:19504445-19504876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:274
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):17, 73

               
               
               Conread position:218-405
               
               
               Cow position:chr9:45749248-45749446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:218-416
               
               
               Cow position:chr9:26388032-26388226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:218-418
               
               
               Cow position:chr9:16115792-16115584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):15, 125

               
               
               Conread position:218-420
               
               
               Cow position:chr9:34484408-34484621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):85, 13

               
               
               Conread position:218-423
               
               
               Cow position:chr9:5772865-5772651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):20, 146

               
               
               Conread position:218-445
               
               
               Cow position:chr9:47517014-47517251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):103, 12

               
               
               Conread position:218-602
               
               
               Cow position:chr9:8919825-8920207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 13

               
               
               Conread position:218-620
               
               
               Cow position:chr9:53762515-53762928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:274
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):89, 112

               
               
               Conread position:218-632
               
               
               Cow position:chr9:20090878-20091278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:281
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):174, 13

               
               
               Conread position:218-632
               
               
               Cow position:chr9:47955445-47954985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:314
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):19, 156

               
               
               Conread position:219-405
               
               
               Cow position:chr9:4257160-4256978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:219-405
               
               
               Cow position:chr9:19718517-19718331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):105, 130

               
               
               Conread position:219-420
               
               
               Cow position:chr9:36401843-36401641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):104, 93

               
               
               Conread position:219-449
               
               
               Cow position:chr9:22408571-22408814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):13, 131

               
               
               Conread position:219-567
               
               
               Cow position:chr9:25556800-25557139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):160, 87

               
               
               Conread position:219-575
               
               
               Cow position:chr9:8901416-8901042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:256
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):20, 134

               
               
               Conread position:219-584
               
               
               Cow position:chr9:19555204-19555565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:234
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):11, 64

               
               
               Conread position:219-601
               
               
               Cow position:chr9:6397969-6397569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:268
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):108, 140

               
               
               Conread position:219-630
               
               
               Cow position:chr9:45285721-45285294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:284
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):96, 11

               
               
               Conread position:219-632
               
               
               Cow position:chr9:1751143-1751573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:300
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):18, 58

               
               
               Conread position:219-632
               
               
               Cow position:chr9:5227345-5226925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:287
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):10, 81

               
               
               Conread position:219-632
               
               
               Cow position:chr9:5433460-5433874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 75

               
               
               Conread position:219-632
               
               
               Cow position:chr9:6934265-6933833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:305
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):8, 20

               
               
               Conread position:219-632
               
               
               Cow position:chr9:7409595-7410021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 11

               
               
               Conread position:219-632
               
               
               Cow position:chr9:54681338-54681741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 47

               
               
               Conread position:219-659
               
               
               Cow position:chr9:647590-648041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:295
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):41, 141

               
               
               Conread position:220-326
               
               
               Cow position:chr9:48367711-48367605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:88
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:220-419
               
               
               Cow position:chr9:44759109-44758908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):93, 133

               
               
               Conread position:220-449
               
               
               Cow position:chr9:48016807-48017038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):126, 99

               
               
               Conread position:220-541
               
               
               Cow position:chr9:1867289-1867596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:214
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):194, 42

               
               
               Conread position:220-632
               
               
               Cow position:chr9:6951931-6952329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:265
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):247, 12

               
               
               Conread position:221-632
               
               
               Cow position:chr9:5392889-5393290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:279
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):16, 126

               
               
               Conread position:222-326
               
               
               Cow position:chr9:35491251-35491356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:87
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:222-421
               
               
               Cow position:chr9:62631848-62631644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):5, 122

               
               
               Conread position:222-529
               
               
               Cow position:chr9:44396479-44396795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):97, 137

               
               
               Conread position:223-389
               
               
               Cow position:chr9:17769142-17769311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):90, 121

               
               
               Conread position:224-536
               
               
               Cow position:chr9:1878177-1877863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):14, 69

               
               
               Conread position:224-632
               
               
               Cow position:chr9:50607108-50606714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:268
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):179, 80

               
               
               Conread position:225-632
               
               
               Cow position:chr9:4861219-4861631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:276
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):32, 93

               
               
               Conread position:225-632
               
               
               Cow position:chr9:49764468-49764895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:290
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):68, 126

               
               
               Conread position:226-632
               
               
               Cow position:chr9:10144663-10144233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:289
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):20, 128

               
               
               Conread position:227-561
               
               
               Cow position:chr9:12280797-12281137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:224
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):9, 119

               
               
               Conread position:227-632
               
               
               Cow position:chr9:24887030-24887439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:283
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):88, 221

               
               
               Conread position:227-632
               
               
               Cow position:chr9:41282837-41283265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:298
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):89, 124

               
               
               Conread position:228-412
               
               
               Cow position:chr9:7543431-7543244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):85, 35

               
               
               Conread position:228-419
               
               
               Cow position:chr9:52649022-52648835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):10, 73

               
               
               Conread position:228-420
               
               
               Cow position:chr9:28722528-28722730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):69, 76

               
               
               Conread position:228-421
               
               
               Cow position:chr9:8537132-8537332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):99, 194

               
               
               Conread position:228-449
               
               
               Cow position:chr9:5110681-5110915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):9, 120

               
               
               Conread position:228-512
               
               
               Cow position:chr9:9311684-9311978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):8, 119

               
               
               Conread position:228-538
               
               
               Cow position:chr9:47214724-47214397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):54, 124

               
               
               Conread position:228-563
               
               
               Cow position:chr9:5456346-5456004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:243
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):81, 114

               
               
               Conread position:228-590
               
               
               Cow position:chr9:42037497-42037850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:240
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):7, 64

               
               
               Conread position:228-620
               
               
               Cow position:chr9:30477947-30477557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:270
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):11, 118

               
               
               Conread position:228-623
               
               
               Cow position:chr9:6338618-6339032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:271
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):9, 42

               
               
               Conread position:228-628
               
               
               Cow position:chr9:41789128-41789514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 32

               
               
               Conread position:228-630
               
               
               Cow position:chr9:29091596-29092041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:303
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):78, 123

               
               
               Conread position:228-631
               
               
               Cow position:chr9:19538925-19539335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:282
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):8, 34

               
               
               Conread position:228-631
               
               
               Cow position:chr9:47868850-47869245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 77

               
               
               Conread position:228-632
               
               
               Cow position:chr9:15215864-15215442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 233

               
               
               Conread position:228-632
               
               
               Cow position:chr9:21030129-21030555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:286
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):8, 137

               
               
               Conread position:228-632
               
               
               Cow position:chr9:22318186-22318577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 79

               
               
               Conread position:228-632
               
               
               Cow position:chr9:41416155-41416590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:293
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):8, 134

               
               
               Conread position:228-633
               
               
               Cow position:chr9:11299847-11299456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:272
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):272, 107

               
               
               Conread position:228-645
               
               
               Cow position:chr9:18380694-18381111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:280
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):87, 166

               
               
               Conread position:229-389
               
               
               Cow position:chr9:8629085-8628924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:230-632
               
               
               Cow position:chr9:34468731-34468354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:274
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):178, 87

               
               
               Conread position:231-418
               
               
               Cow position:chr9:29819555-29819740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):183, 109

               
               
               Conread position:232-388
               
               
               Cow position:chr9:51891081-51891238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):72, 108

               
               
               Conread position:232-403
               
               
               Cow position:chr9:8613383-8613204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):84, 39

               
               
               Conread position:232-403
               
               
               Cow position:chr9:16216808-16216988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):67, 116

               
               
               Conread position:232-405
               
               
               Cow position:chr9:12773524-12773699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:232-412
               
               
               Cow position:chr9:9436148-9435971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:232-418
               
               
               Cow position:chr9:18003348-18003167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):175, 37

               
               
               Conread position:232-420
               
               
               Cow position:chr9:8767585-8767394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):91, 113

               
               
               Conread position:232-422
               
               
               Cow position:chr9:59586145-59586339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):77, 120

               
               
               Conread position:232-443
               
               
               Cow position:chr9:9459819-9460032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):93, 80

               
               
               Conread position:232-446
               
               
               Cow position:chr9:14738082-14738303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):77, 121

               
               
               Conread position:232-452
               
               
               Cow position:chr9:28156530-28156753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):119, 96

               
               
               Conread position:232-507
               
               
               Cow position:chr9:9358648-9358926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):81, 26

               
               
               Conread position:232-530
               
               
               Cow position:chr9:31359434-31359737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):15, 124

               
               
               Conread position:232-530
               
               
               Cow position:chr9:40005307-40005612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):92, 32

               
               
               Conread position:232-542
               
               
               Cow position:chr9:34283781-34284096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:214
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):16, 117

               
               
               Conread position:232-562
               
               
               Cow position:chr9:6852221-6851899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):175, 28

               
               
               Conread position:232-574
               
               
               Cow position:chr9:11168575-11168911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:238
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):78, 32

               
               
               Conread position:232-586
               
               
               Cow position:chr9:25583661-25584013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):81, 34

               
               
               Conread position:232-619
               
               
               Cow position:chr9:27279136-27279544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 127

               
               
               Conread position:232-620
               
               
               Cow position:chr9:1532484-1532105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:254
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):80, 31

               
               
               Conread position:232-624
               
               
               Cow position:chr9:9573150-9573566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:286
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):85, 131

               
               
               Conread position:232-624
               
               
               Cow position:chr9:56088248-56087836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:270
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):77, 138

               
               
               Conread position:232-630
               
               
               Cow position:chr9:51620274-51620673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 111

               
               
               Conread position:232-631
               
               
               Cow position:chr9:5327092-5327492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 112

               
               
               Conread position:232-631
               
               
               Cow position:chr9:15806096-15805683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 119

               
               
               Conread position:232-631
               
               
               Cow position:chr9:34375097-34374691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:278
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):75, 184

               
               
               Conread position:232-632
               
               
               Cow position:chr9:3387546-3387930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:276
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):267, 59

               
               
               Conread position:232-632
               
               
               Cow position:chr9:5500694-5501090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:275
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):118, 39

               
               
               Conread position:232-632
               
               
               Cow position:chr9:9516918-9516531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:265
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):65, 148

               
               
               Conread position:232-632
               
               
               Cow position:chr9:13670466-13670875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 251

               
               
               Conread position:232-632
               
               
               Cow position:chr9:13993989-13994427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:285
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):48, 133

               
               
               Conread position:232-632
               
               
               Cow position:chr9:15983245-15982839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:282
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):93, 128

               
               
               Conread position:232-632
               
               
               Cow position:chr9:20901288-20900891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:279
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):81, 106

               
               
               Conread position:232-632
               
               
               Cow position:chr9:21460323-21459918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:277
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):71, 45

               
               
               Conread position:232-632
               
               
               Cow position:chr9:28947716-28948091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:262
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):262, 71

               
               
               Conread position:232-632
               
               
               Cow position:chr9:32676507-32676925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:291
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):75, 31

               
               
               Conread position:232-632
               
               
               Cow position:chr9:33597803-33598220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 127

               
               
               Conread position:232-632
               
               
               Cow position:chr9:37016731-37017123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:286
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):38, 14

               
               
               Conread position:232-632
               
               
               Cow position:chr9:44822492-44822063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:293
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):78, 113

               
               
               Conread position:232-632
               
               
               Cow position:chr9:52485084-52484678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:270
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):10, 115

               
               
               Conread position:232-632
               
               
               Cow position:chr9:55256719-55256310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:273
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):75, 213

               
               
               Conread position:233-371
               
               
               Cow position:chr9:9759738-9759601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):79, 49

               
               
               Conread position:233-405
               
               
               Cow position:chr9:151697-151877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):82, 127

               
               
               Conread position:233-419
               
               
               Cow position:chr9:5342415-5342225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):88, 113

               
               
               Conread position:233-420
               
               
               Cow position:chr9:39709684-39709881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):101, 127

               
               
               Conread position:233-628
               
               
               Cow position:chr9:1729856-1729441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:285
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):45, 136

               
               
               Conread position:233-631
               
               
               Cow position:chr9:17872276-17871869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 222

               
               
               Conread position:233-631
               
               
               Cow position:chr9:61544494-61544887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:272
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):45, 57

               
               
               Conread position:234-420
               
               
               Cow position:chr9:34707479-34707288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):13, 113

               
               
               Conread position:234-613
               
               
               Cow position:chr9:17799467-17799850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:269
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):139, 80

               
               
               Conread position:234-632
               
               
               Cow position:chr9:18253088-18252684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:294
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):65, 120

               
               
               Conread position:234-632
               
               
               Cow position:chr9:20847778-20848175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:261
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):161, 31

               
               
               Conread position:235-578
               
               
               Cow position:chr9:55321487-55321822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):169, 51

               
               
               Conread position:235-631
               
               
               Cow position:chr9:22637932-22638338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:272
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):90, 124

               
               
               Conread position:235-632
               
               
               Cow position:chr9:32815485-32815877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:272
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):77, 121

               
               
               Conread position:236-448
               
               
               Cow position:chr9:7806120-7805905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):171, 104

               
               
               Conread position:236-614
               
               
               Cow position:chr9:48627857-48628251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:255
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):50, 243

               
               
               Conread position:236-631
               
               
               Cow position:chr9:36491070-36490657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:277
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):57, 182

               
               
               Conread position:236-631
               
               
               Cow position:chr9:41679596-41679973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:271
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):179, 73

               
               
               Conread position:236-632
               
               
               Cow position:chr9:9596116-9595715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:258
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):77, 177

               
               
               Conread position:236-632
               
               
               Cow position:chr9:26403629-26404028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 63

               
               
               Conread position:236-632
               
               
               Cow position:chr9:35167003-35167407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:290
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):63, 33

               
               
               Conread position:236-632
               
               
               Cow position:chr9:42497662-42498068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 134

               
               
               Conread position:236-632
               
               
               Cow position:chr9:55117916-55118317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:265
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):73, 125

               
               
               Conread position:236-632
               
               
               Cow position:chr9:64637386-64637784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:262
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):70, 53

               
               
               Conread position:237-624
               
               
               Cow position:chr9:19637784-19637407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:247
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):192, 62

               
               
               Conread position:237-625
               
               
               Cow position:chr9:43623100-43623492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:271
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):87, 124

               
               
               Conread position:237-631
               
               
               Cow position:chr9:22152247-22151849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 116

               
               
               Conread position:237-631
               
               
               Cow position:chr9:63785074-63784686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:273
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):85, 62

               
               
               Conread position:237-645
               
               
               Cow position:chr9:9724044-9723630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 111

               
               
               Conread position:238-623
               
               
               Cow position:chr9:8936984-8937378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:277
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):78, 123

               
               
               Conread position:241-630
               
               
               Cow position:chr9:38846502-38846112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:279
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):52, 115

               
               
               Conread position:242-580
               
               
               Cow position:chr9:56065406-56065735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:231
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):48, 103

               
               
               Conread position:242-586
               
               
               Cow position:chr9:30123770-30124113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:227
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):58, 51

               
               
               Conread position:242-630
               
               
               Cow position:chr9:61738761-61739154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:259
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):83, 112

               
               
               Conread position:242-631
               
               
               Cow position:chr9:5757137-5756765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:267
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):28, 68

               
               
               Conread position:242-632
               
               
               Cow position:chr9:389157-388776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:257
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):258, 15

               
               
               Conread position:242-632
               
               
               Cow position:chr9:6879641-6880009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:273
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):301, 49

               
               
               Conread position:242-632
               
               
               Cow position:chr9:9551928-9552326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:273
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):16, 33

               
               
               Conread position:242-632
               
               
               Cow position:chr9:9753562-9753156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:288
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):67, 9

               
               
               Conread position:242-632
               
               
               Cow position:chr9:16300734-16300332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:286
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):70, 21

               
               
               Conread position:242-635
               
               
               Cow position:chr9:28726889-28726481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 220

               
               
               Conread position:242-636
               
               
               Cow position:chr9:33219117-33218709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:275
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):73, 174

               
               
               Conread position:242-645
               
               
               Cow position:chr9:5835990-5836414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:281
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):68, 17

               
               
               Conread position:243-523
               
               
               Cow position:chr9:4629950-4630234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:194
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):69, 99

               
               
               Conread position:243-632
               
               
               Cow position:chr9:31346790-31347193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:273
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):66, 316

               
               
               Conread position:243-632
               
               
               Cow position:chr9:32307393-32306997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 108

               
               
               Conread position:243-632
               
               
               Cow position:chr9:32732823-32732447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:274
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):255, 60

               
               
               Conread position:243-632
               
               
               Cow position:chr9:33822958-33823337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:268
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):81, 18

               
               
               Conread position:245-632
               
               
               Cow position:chr9:8546184-8546557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:222
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):244, 18

               
               
               Conread position:245-645
               
               
               Cow position:chr9:4646476-4646076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:274
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):103, 23

               
               
               Conread position:246-420
               
               
               Cow position:chr9:41964888-41964709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):75, 31

               
               
               Conread position:246-422
               
               
               Cow position:chr9:25400343-25400171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):157, 46

               
               
               Conread position:246-590
               
               
               Cow position:chr9:9815257-9815614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:250
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):80, 17

               
               
               Conread position:246-629
               
               
               Cow position:chr9:3185973-3186378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:268
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):95, 68

               
               
               Conread position:246-630
               
               
               Cow position:chr9:64105747-64106143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:256
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):78, 383

               
               
               Conread position:246-631
               
               
               Cow position:chr9:18216068-18215671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:272
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):73, 113

               
               
               Conread position:246-631
               
               
               Cow position:chr9:24726824-24726440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:267
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):84, 170

               
               
               Conread position:246-632
               
               
               Cow position:chr9:3070573-3070184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 64

               
               
               Conread position:246-632
               
               
               Cow position:chr9:3931820-3932206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:254
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):162, 45

               
               
               Conread position:246-632
               
               
               Cow position:chr9:10010656-10011039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:269
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):108, 101

               
               
               Conread position:246-632
               
               
               Cow position:chr9:22443779-22443372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 106

               
               
               Conread position:246-632
               
               
               Cow position:chr9:30402585-30402181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:275
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):75, 329

               
               
               Conread position:246-632
               
               
               Cow position:chr9:34958208-34957812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 211

               
               
               Conread position:246-645
               
               
               Cow position:chr9:55288045-55287639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 102

               
               
               Conread position:247-632
               
               
               Cow position:chr9:29185295-29184894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 226

               
               
               Conread position:248-420
               
               
               Cow position:chr9:58369147-58368973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):63, 92

               
               
               Conread position:248-632
               
               
               Cow position:chr9:27697880-27697491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:257
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):20, 29

               
               
               Conread position:251-462
               
               
               Cow position:chr9:20637224-20637441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):56, 95

               
               
               Conread position:251-632
               
               
               Cow position:chr9:23388831-23388439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:254
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):58, 145

               
               
               Conread position:257-539
               
               
               Cow position:chr9:41394795-41394509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):46, 101

               
               
               Conread position:260-630
               
               
               Cow position:chr9:64091544-64091925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):155, 195

               
               
               Conread position:262-632
               
               
               Cow position:chr9:8288484-8288856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:255
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):33, 80

               
               
               Conread position:263-632
               
               
               Cow position:chr9:20416653-20416270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:262
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):53, 148

               
               
               Conread position:268-632
               
               
               Cow position:chr9:43870852-43871211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:256
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):135, 21

               
               
               Conread position:271-630
               
               
               Cow position:chr9:41513506-41513856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:252
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):49, 72

               
               
               Conread position:271-631
               
               
               Cow position:chr9:56011372-56011735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:241
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):50, 41

               
               
               Conread position:271-632
               
               
               Cow position:chr9:42446105-42445743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 12

               
               
               Conread position:272-632
               
               
               Cow position:chr9:17741071-17740705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:243
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):49, 108

               
               
               Conread position:277-627
               
               
               Cow position:chr9:48107236-48106886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:244
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):63, 53

               
               
               Conread position:286-614
               
               
               Cow position:chr9:28354407-28354739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:230
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):13, 56

               
               
               Conread position:286-631
               
               
               Cow position:chr9:61997715-61997357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:245
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):29, 12

               
               
               Conread position:298-632
               
               
               Cow position:chr9:46316880-46316549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):22, 70

               
               
               Conread position:298-635
               
               
               Cow position:chr9:56772979-56773324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:229
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):89, 22

               
               
               Conread position:298-645
               
               
               Cow position:chr9:51204629-51204977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):85, 182

               
               
               Conread position:299-616
               
               
               Cow position:chr9:1972850-1973165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):14, 35

               
               
               Conread position:299-631
               
               
               Cow position:chr9:1949823-1950157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):123, 19

               
               
               Conread position:299-632
               
               
               Cow position:chr9:10309094-10308768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:226
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):11, 78

               
               
               Conread position:299-635
               
               
               Cow position:chr9:11313614-11313264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):15, 115

               
               
               Conread position:300-632
               
               
               Cow position:chr9:24997615-24997277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):18, 62

               
               
               Conread position:303-632
               
               
               Cow position:chr9:17310654-17310323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:228
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):111, 38

               
               
               Conread position:303-632
               
               
               Cow position:chr9:55889723-55890048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:222
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):108, 17

               
               
               Conread position:303-632
               
               
               Cow position:chr9:59386859-59386538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):105, 30

               
               
               Conread position:304-632
               
               
               Cow position:chr9:5509634-5509963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 26

               
               
               Conread position:308-608
               
               
               Cow position:chr9:19493553-19493244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):99, 27

               
               
               Conread position:310-632
               
               
               Cow position:chr9:7362941-7363266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:236
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):11, 43

               
               
               Conread position:310-632
               
               
               Cow position:chr9:11193264-11192928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:226
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):24, 156

               
               
               Conread position:317-609
               
               
               Cow position:chr9:33092882-33093170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):179, 14

               
               
               Conread position:317-631
               
               
               Cow position:chr9:18217175-18216862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:224
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):91, 10

               
               
               Conread position:318-632
               
               
               Cow position:chr9:23431224-23430903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):49, 31

               
               
               Conread position:318-632
               
               
               Cow position:chr9:44915174-44914856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):89, 23

               
               
               Conread position:319-626
               
               
               Cow position:chr9:4268059-4267747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):93, 88

               
               
               Conread position:319-631
               
               
               Cow position:chr9:44832128-44831817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:212
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):95, 16

               
               
               Conread position:319-632
               
               
               Cow position:chr9:31079156-31078843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):95, 22

               
               
               Conread position:319-632
               
               
               Cow position:chr9:33119965-33119643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):89, 125

               
               
               Conread position:319-645
               
               
               Cow position:chr9:5763707-5763378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:223
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):95, 16

               
               
               Conread position:320-588
               
               
               Cow position:chr9:62668174-62668447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):83, 13

               
               
               Conread position:320-629
               
               
               Cow position:chr9:9461730-9461419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):74, 13

               
               
               Conread position:320-632
               
               
               Cow position:chr9:31814462-31814139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:224
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):14, 22

               
               
               Conread position:320-632
               
               
               Cow position:chr9:38961504-38961199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):169, 25

               
               
               Conread position:320-632
               
               
               Cow position:chr9:54528438-54528754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):96, 130

               
               
               Conread position:320-636
               
               
               Cow position:chr9:1520815-1520487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:230
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):62, 21

               
               
               Conread position:320-645
               
               
               Cow position:chr9:55075204-55074883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:227
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):77, 85

               
               
               Conread position:321-633
               
               
               Cow position:chr9:62442215-62442523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):11, 21

               
               
               Conread position:321-645
               
               
               Cow position:chr9:47906353-47906037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:228
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):59, 21

               
               
               Conread position:323-540
               
               
               Cow position:chr9:35105862-35105644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):78, 26

               
               
               Conread position:323-603
               
               
               Cow position:chr9:49416915-49417197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:192
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):87, 18

               
               
               Conread position:323-609
               
               
               Cow position:chr9:43443732-43444011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):28, 17

               
               
               Conread position:323-629
               
               
               Cow position:chr9:26435129-26434831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:211
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):85, 26

               
               
               Conread position:323-630
               
               
               Cow position:chr9:14796842-14796541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):91, 18

               
               
               Conread position:323-631
               
               
               Cow position:chr9:5594431-5594738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):83, 18

               
               
               Conread position:323-631
               
               
               Cow position:chr9:22696151-22696455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:232
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):85, 26

               
               
               Conread position:323-631
               
               
               Cow position:chr9:37069631-37069331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:222
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):38, 18

               
               
               Conread position:323-631
               
               
               Cow position:chr9:52000947-52001246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):175, 18

               
               
               Conread position:323-631
               
               
               Cow position:chr9:55084373-55084059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:224
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):102, 18

               
               
               Conread position:323-631
               
               
               Cow position:chr9:58972566-58972255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):160, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr9:5245781-5246088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):88, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr9:8337955-8338269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):85, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr9:17411265-17410945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):91, 26

               
               
               Conread position:323-632
               
               
               Cow position:chr9:19714008-19714308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):85, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr9:50075992-50076305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):139, 26

               
               
               Conread position:323-632
               
               
               Cow position:chr9:50139213-50139520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:228
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):85, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr9:54716674-54716382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):100, 18

               
               
               Conread position:323-632
               
               
               Cow position:chr9:64050633-64050316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:224
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):85, 26

               
               
               Conread position:323-632
               
               
               Cow position:chr9:64155923-64155617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:214
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):85, 18

               
               
               Conread position:323-635
               
               
               Cow position:chr9:45756291-45756602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):82, 26

               
               
               Conread position:323-645
               
               
               Cow position:chr9:50081112-50080794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:225
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):175, 18

               
               
               Conread position:323-650
               
               
               Cow position:chr9:9443673-9443340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 18

               
               
               Conread position:324-606
               
               
               Cow position:chr9:28392097-28391818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):90, 83

               
               
               Conread position:324-631
               
               
               Cow position:chr9:11319706-11319394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:221
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):84, 133

               
               
               Conread position:324-632
               
               
               Cow position:chr9:64559953-64559648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):74, 17

               
               
               Conread position:325-630
               
               
               Cow position:chr9:62656733-62657029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):55, 16

               
               
               Conread position:325-632
               
               
               Cow position:chr9:20989529-20989215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:212
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):88, 82

               
               
               Conread position:325-632
               
               
               Cow position:chr9:44467409-44467110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):89, 16

               
               
               Conread position:325-632
               
               
               Cow position:chr9:63745745-63746043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):164, 24

               
               
               Conread position:325-645
               
               
               Cow position:chr9:21888100-21888421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 16

               
               
               Conread position:331-631
               
               
               Cow position:chr9:5162114-5161828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):212, 8

               
               
               Conread position:333-631
               
               
               Cow position:chr9:8534752-8534445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:223
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):75, 6

               
               
               Conread position:340-637
               
               
               Cow position:chr9:58204617-58204909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):224, 70

               
               
               Conread position:342-580
               
               
               Cow position:chr9:9823560-9823319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):66, 94

               
               
               Conread position:351-632
               
               
               Cow position:chr9:22114680-22114394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):58, 84

               
               
               Conread position:351-632
               
               
               Cow position:chr9:35375381-35375663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:213
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):57, 25

               
               
               Conread position:351-632
               
               
               Cow position:chr9:35904790-35904512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):54, 101

               
               
               Conread position:351-632
               
               
               Cow position:chr9:49709802-49710083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):41, 116

               
               
               Conread position:351-633
               
               
               Cow position:chr9:9200768-9200485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):57, 13

               
               
               Conread position:351-645
               
               
               Cow position:chr9:31077715-31077426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:205
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):110, 56

               
               
               Conread position:352-629
               
               
               Cow position:chr9:37099282-37098997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):57, 15

               
               
               Conread position:352-632
               
               
               Cow position:chr9:49983133-49982858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):62, 55

               
               
               Conread position:356-632
               
               
               Cow position:chr9:40542095-40542353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):142, 39

               
               
               Conread position:357-632
               
               
               Cow position:chr9:47472647-47472935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:357-632
               
               
               Cow position:chr9:61492993-61493266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:198
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):57, 50

               
               
               Conread position:361-625
               
               
               Cow position:chr9:31292657-31292920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):67, 80

               
               
               Conread position:361-632
               
               
               Cow position:chr9:36445585-36445861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):47, 170

               
               
               Conread position:362-632
               
               
               Cow position:chr9:6089054-6089336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):46, 219

               
               
               Conread position:364-631
               
               
               Cow position:chr9:35849872-35850137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):50, 43

               
               
               Conread position:366-632
               
               
               Cow position:chr9:38343860-38344133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):48, 29

               
               
               Conread position:367-632
               
               
               Cow position:chr9:35360129-35359863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):55, 25

               
               
               Conread position:367-632
               
               
               Cow position:chr9:36827106-36827364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):35, 77

               
               
               Conread position:368-632
               
               
               Cow position:chr9:9416423-9416168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):40, 22

               
               
               Conread position:369-632
               
               
               Cow position:chr9:35533980-35533712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):34, 88

               
               
               Conread position:369-632
               
               
               Cow position:chr9:59795315-59795041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):34, 82

               
               
               Conread position:370-631
               
               
               Cow position:chr9:25958391-25958652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:189
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):38, 67

               
               
               Conread position:373-628
               
               
               Cow position:chr9:1952293-1952034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:195
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):35, 83

               
               
               Conread position:378-643
               
               
               Cow position:chr9:50703129-50702863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):29, 84

               
               
               Conread position:378-645
               
               
               Cow position:chr9:49983708-49983440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:190
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):15, 76

               
               
               Conread position:382-633
               
               
               Cow position:chr9:29108522-29108777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):26, 53

               
               
               Conread position:384-624
               
               
               Cow position:chr9:33038473-33038227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):32, 23

               
               
               Conread position:384-632
               
               
               Cow position:chr9:6225467-6225213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):24, 68

               
               
               Conread position:391-645
               
               
               Cow position:chr9:26390765-26391020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):6, 44

               
               
               Conread position:393-632
               
               
               Cow position:chr9:10092392-10092154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):107, 10

               
               
               Conread position:399-632
               
               
               Cow position:chr9:47264215-47263980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):10, 124

               
               
               Conread position:402-631
               
               
               Cow position:chr9:29035028-29034801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):11, 158

               
               
               Conread position:402-631
               
               
               Cow position:chr9:54998021-54997785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:402-632
               
               
               Cow position:chr9:18163149-18162916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):7, 11

               
               
               Conread position:403-618
               
               
               Cow position:chr9:1997148-1997363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):52, 80

               
               
               Conread position:403-632
               
               
               Cow position:chr9:58134011-58133783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):12, 57

               
               
               Conread position:404-622
               
               
               Cow position:chr9:50667434-50667653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):85, 7

               
               
               Conread position:405-590
               
               
               Cow position:chr9:49279477-49279671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:411-631
               
               
               Cow position:chr9:5531964-5532191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):87, 47

               
               
               Conread position:411-632
               
               
               Cow position:chr9:18002935-18002710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:173
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):87, 47

               
               
               Conread position:411-632
               
               
               Cow position:chr9:34000601-34000377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):132, 35

               
               
               Conread position:411-632
               
               
               Cow position:chr9:37000042-36999822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):78, 47

               
               
               Conread position:419-632
               
               
               Cow position:chr9:58439755-58439542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):78, 39

               
               
               Conread position:430-632
               
               
               Cow position:chr9:29825072-29825275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):70, 21

               
               
               Conread position:431-631
               
               
               Cow position:chr9:32812380-32812586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:431-632
               
               
               Cow position:chr9:42998432-42998232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):67, 175

               
               
               Conread position:443-631
               
               
               Cow position:chr9:20738751-20738940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):55, 14

               
               
               Conread position:444-632
               
               
               Cow position:chr9:61847101-61846911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):54, 23

               
               
               Conread position:447-632
               
               
               Cow position:chr9:30664730-30664539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):51, 11

               
               
               Conread position:451-632
               
               
               Cow position:chr9:38875520-38875335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):49, 16

               
               
               Conread position:458-632
               
               
               Cow position:chr9:36623381-36623213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):78, 27

               
               
               Conread position:458-632
               
               
               Cow position:chr9:41995772-41995953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:459-632
               
               
               Cow position:chr9:30749523-30749346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:463-627
               
               
               Cow position:chr9:64517032-64516861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:463-632
               
               
               Cow position:chr9:22228015-22227847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):35, 118

               
               
               Conread position:463-632
               
               
               Cow position:chr9:27077177-27077012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):31, 14

               
               
               Conread position:463-645
               
               
               Cow position:chr9:5319701-5319881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:470-632
               
               
               Cow position:chr9:4128709-4128545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:470-632
               
               
               Cow position:chr9:9490867-9491032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):66, 126

               
               
               Conread position:470-632
               
               
               Cow position:chr9:23541333-23541179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):30, 61

               
               
               Conread position:470-632
               
               
               Cow position:chr9:34919188-34919027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):28, 88

               
               
               Conread position:473-632
               
               
               Cow position:chr9:17785384-17785222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):20, 8

               
               
               Conread position:481-632
               
               
               Cow position:chr9:5621949-5621791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:481-632
               
               
               Cow position:chr9:37141317-37141467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):17, 90

               
               
               Conread position:483-632
               
               
               Cow position:chr9:58647130-58647280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):32, 92

               
               
               Conread position:491-632
               
               
               Cow position:chr9:17568239-17568377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):27, 45

               
               
               Conread position:492-630
               
               
               Cow position:chr9:12355954-12356093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:493-631
               
               
               Cow position:chr9:54611135-54610993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):50, 13

               
               
               Conread position:493-632
               
               
               Cow position:chr9:3410869-3411009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):44, 54

               
               
               Conread position:493-632
               
               
               Cow position:chr9:19382424-19382562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):40, 50

               
               
               Conread position:493-645
               
               
               Cow position:chr9:8869042-8868884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):45, 13

               
               
               Conread position:494-632
               
               
               Cow position:chr9:4928728-4928870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:495-613
               
               
               Cow position:chr9:1879477-1879596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:94
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:495-627
               
               
               Cow position:chr9:1350345-1350211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):86, 70

               
               
               Conread position:495-630
               
               
               Cow position:chr9:22616726-22616860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:104
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:495-631
               
               
               Cow position:chr9:10877770-10877628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:495-631
               
               
               Cow position:chr9:16182388-16182252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr9:767051-766911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr9:3924722-3924855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr9:7634375-7634506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr9:8562939-8563080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr9:20839717-20839853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:105
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr9:21840177-21840314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr9:22361117-22361254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):91, 19

               
               
               Conread position:495-632
               
               
               Cow position:chr9:26310656-26310797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr9:32371659-32371521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr9:35100969-35101106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):38, 48

               
               
               Conread position:495-632
               
               
               Cow position:chr9:37528555-37528695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:495-632
               
               
               Cow position:chr9:41652887-41653028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:495-633
               
               
               Cow position:chr9:57951221-57951089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):48, 75

               
               
               Conread position:495-645
               
               
               Cow position:chr9:28773223-28773369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:496-632
               
               
               Cow position:chr9:3379225-3379355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:496-632
               
               
               Cow position:chr9:18073011-18072878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:496-632
               
               
               Cow position:chr9:26556098-26555967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):19, 39

               
               
               Conread position:497-629
               
               
               Cow position:chr9:53608291-53608155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:499-628
               
               
               Cow position:chr9:41485892-41485764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):16, 86

               
               
               Conread position:501-631
               
               
               Cow position:chr9:5238500-5238634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:104
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:501-632
               
               
               Cow position:chr9:42585518-42585387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):37, 115

               
               
               Conread position:502-631
               
               
               Cow position:chr9:20810956-20810823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:102
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:503-632
               
               
               Cow position:chr9:18140187-18140056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:104
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):40, 123

               
               
               Conread position:503-633
               
               
               Cow position:chr9:62134510-62134380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):75, 94

               
               
               Conread position:505-632
               
               
               Cow position:chr9:18008752-18008628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):40, 81

               
               
               Conread position:506-632
               
               
               Cow position:chr9:33101032-33100901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:103
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:514-632
               
               
               Cow position:chr9:20465596-20465474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:97
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:523-633
               
               
               Cow position:chr9:5399848-5399959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:94
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:535-632
               
               
               Cow position:chr9:48017681-48017584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:98
               
               
               Alignm identity:81
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:166-406
               
               
               Cow position:chrX:44123545-44123301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):74, 121

               
               
               Conread position:194-627
               
               
               Cow position:chrX:45429765-45430195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:284
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):119, 50

               
               
               Conread position:196-632
               
               
               Cow position:chrX:34532776-34532345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:295
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):32, 10

               
               
               Conread position:198-632
               
               
               Cow position:chrX:21593551-21593100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 33

               
               
               Conread position:199-449
               
               
               Cow position:chrX:39290615-39290358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):67, 33

               
               
               Conread position:199-632
               
               
               Cow position:chrX:21642216-21642662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:299
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):32, 166

               
               
               Conread position:201-625
               
               
               Cow position:chrX:45598342-45598780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:289
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):22, 152

               
               
               Conread position:202-632
               
               
               Cow position:chrX:16763023-16762589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 26

               
               
               Conread position:204-632
               
               
               Cow position:chrX:35224529-35224116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:279
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):113, 23

               
               
               Conread position:206-326
               
               
               Cow position:chrX:42506689-42506812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:206-632
               
               
               Cow position:chrX:7513764-7513331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:279
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):15, 60

               
               
               Conread position:206-632
               
               
               Cow position:chrX:22822307-22821864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:309
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):95, 44

               
               
               Conread position:207-398
               
               
               Cow position:chrX:41199479-41199278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):14, 150

               
               
               Conread position:207-420
               
               
               Cow position:chrX:24425749-24425972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):88, 21

               
               
               Conread position:207-455
               
               
               Cow position:chrX:35276242-35275980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):22, 142

               
               
               Conread position:207-645
               
               
               Cow position:chrX:39938284-39938719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:301
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):31, 96

               
               
               Conread position:208-417
               
               
               Cow position:chrX:27270626-27270410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):11, 67

               
               
               Conread position:208-438
               
               
               Cow position:chrX:19018577-19018821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):85, 20

               
               
               Conread position:208-632
               
               
               Cow position:chrX:11656332-11655905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 206

               
               
               Conread position:208-632
               
               
               Cow position:chrX:41878680-41879118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 66

               
               
               Conread position:209-393
               
               
               Cow position:chrX:23358866-23359055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:209-397
               
               
               Cow position:chrX:15100232-15100038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):29, 72

               
               
               Conread position:209-536
               
               
               Cow position:chrX:6559205-6559532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):150, 126

               
               
               Conread position:209-537
               
               
               Cow position:chrX:27261441-27261100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):100, 52

               
               
               Conread position:209-632
               
               
               Cow position:chrX:6544498-6544073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 113

               
               
               Conread position:209-632
               
               
               Cow position:chrX:11633935-11633495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 253

               
               
               Conread position:210-579
               
               
               Cow position:chrX:45875642-45875261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:258
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):34, 58

               
               
               Conread position:210-632
               
               
               Cow position:chrX:27175246-27174812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 17

               
               
               Conread position:211-624
               
               
               Cow position:chrX:27145851-27145447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:278
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):26, 192

               
               
               Conread position:211-646
               
               
               Cow position:chrX:16996747-16996309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:292
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):20, 210

               
               
               Conread position:212-405
               
               
               Cow position:chrX:19394801-19394600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):103, 19

               
               
               Conread position:212-632
               
               
               Cow position:chrX:25035137-25035571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:304
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):104, 19

               
               
               Conread position:212-632
               
               
               Cow position:chrX:34412097-34411657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:288
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):11, 272

               
               
               Conread position:212-632
               
               
               Cow position:chrX:42246933-42247367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 147

               
               
               Conread position:213-539
               
               
               Cow position:chrX:7648166-7648491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):52, 15

               
               
               Conread position:213-540
               
               
               Cow position:chrX:31515418-31515078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):83, 142

               
               
               Conread position:213-627
               
               
               Cow position:chrX:46032479-46032900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:294
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):19, 55

               
               
               Conread position:213-632
               
               
               Cow position:chrX:10959169-10959584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:274
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):186, 80

               
               
               Conread position:214-556
               
               
               Cow position:chrX:13924105-13923764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):107, 18

               
               
               Conread position:214-580
               
               
               Cow position:chrX:34504808-34505178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:238
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):106, 29

               
               
               Conread position:214-597
               
               
               Cow position:chrX:20584554-20584170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:265
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):169, 11

               
               
               Conread position:214-632
               
               
               Cow position:chrX:10865625-10866051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:297
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):105, 14

               
               
               Conread position:214-632
               
               
               Cow position:chrX:22624708-22624298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:279
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):9, 88

               
               
               Conread position:214-632
               
               
               Cow position:chrX:33001146-33000720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 130

               
               
               Conread position:215-322
               
               
               Cow position:chrX:42220456-42220563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:86
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:215-375
               
               
               Cow position:chrX:26720446-26720605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):98, 13

               
               
               Conread position:215-404
               
               
               Cow position:chrX:19000373-19000174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):17, 146

               
               
               Conread position:215-405
               
               
               Cow position:chrX:5487703-5487892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:215-405
               
               
               Cow position:chrX:31744768-31744957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):13, 78

               
               
               Conread position:215-420
               
               
               Cow position:chrX:46910054-46909847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):21, 52

               
               
               Conread position:215-425
               
               
               Cow position:chrX:11454416-11454211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):97, 13

               
               
               Conread position:215-452
               
               
               Cow position:chrX:40337156-40336906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):110, 133

               
               
               Conread position:215-481
               
               
               Cow position:chrX:11762768-11763036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):192, 15

               
               
               Conread position:215-624
               
               
               Cow position:chrX:21672811-21672376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:296
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):22, 151

               
               
               Conread position:215-631
               
               
               Cow position:chrX:25815653-25816078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 334

               
               
               Conread position:215-632
               
               
               Cow position:chrX:17795226-17794802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:270
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):23, 38

               
               
               Conread position:215-632
               
               
               Cow position:chrX:31948687-31949114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:295
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):22, 146

               
               
               Conread position:216-325
               
               
               Cow position:chrX:44040422-44040312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:92
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:216-386
               
               
               Cow position:chrX:34193839-34194015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):103, 15

               
               
               Conread position:216-401
               
               
               Cow position:chrX:41011133-41010949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):97, 14

               
               
               Conread position:216-406
               
               
               Cow position:chrX:14951108-14951307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):21, 144

               
               
               Conread position:216-406
               
               
               Cow position:chrX:19203101-19203300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):105, 144

               
               
               Conread position:216-412
               
               
               Cow position:chrX:45228716-45228527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:216-419
               
               
               Cow position:chrX:19761992-19761787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):105, 20

               
               
               Conread position:216-420
               
               
               Cow position:chrX:11781492-11781285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):25, 192

               
               
               Conread position:216-420
               
               
               Cow position:chrX:26205214-26205416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):93, 31

               
               
               Conread position:216-435
               
               
               Cow position:chrX:20957481-20957251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):104, 30

               
               
               Conread position:216-438
               
               
               Cow position:chrX:35285416-35285183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):105, 15

               
               
               Conread position:216-449
               
               
               Cow position:chrX:17956933-17956692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):83, 168

               
               
               Conread position:216-455
               
               
               Cow position:chrX:16836050-16836292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:160
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):83, 107

               
               
               Conread position:216-494
               
               
               Cow position:chrX:41941866-41941577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):103, 16

               
               
               Conread position:216-515
               
               
               Cow position:chrX:38321141-38321453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:211
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):103, 13

               
               
               Conread position:216-568
               
               
               Cow position:chrX:4403562-4403195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:244
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):110, 223

               
               
               Conread position:216-607
               
               
               Cow position:chrX:36356346-36355957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:270
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):98, 15

               
               
               Conread position:216-618
               
               
               Cow position:chrX:20677608-20677202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:271
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):110, 47

               
               
               Conread position:216-619
               
               
               Cow position:chrX:14955521-14955938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:276
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):22, 148

               
               
               Conread position:216-630
               
               
               Cow position:chrX:11856647-11856247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 77

               
               
               Conread position:216-630
               
               
               Cow position:chrX:13382571-13382144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:287
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):14, 202

               
               
               Conread position:216-631
               
               
               Cow position:chrX:23563544-23563979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:296
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):15, 147

               
               
               Conread position:216-632
               
               
               Cow position:chrX:1175742-1176166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 77

               
               
               Conread position:216-632
               
               
               Cow position:chrX:8925926-8925522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 84

               
               
               Conread position:216-632
               
               
               Cow position:chrX:15546128-15545711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 55

               
               
               Conread position:216-632
               
               
               Cow position:chrX:27446929-27446505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:296
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):10, 142

               
               
               Conread position:216-632
               
               
               Cow position:chrX:41084140-41083742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:278
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):119, 81

               
               
               Conread position:216-632
               
               
               Cow position:chrX:47046268-47046703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:294
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):51, 27

               
               
               Conread position:216-632
               
               
               Cow position:chrX:48237062-48236628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:285
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):14, 132

               
               
               Conread position:216-645
               
               
               Cow position:chrX:30962628-30963068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 139

               
               
               Conread position:216-645
               
               
               Cow position:chrX:31489763-31489316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 13

               
               
               Conread position:216-645
               
               
               Cow position:chrX:46588066-46587621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 76

               
               
               Conread position:217-374
               
               
               Cow position:chrX:37717964-37717800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):102, 20

               
               
               Conread position:217-400
               
               
               Cow position:chrX:1101794-1101609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):19, 135

               
               
               Conread position:217-404
               
               
               Cow position:chrX:47100351-47100549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):88, 144

               
               
               Conread position:217-413
               
               
               Cow position:chrX:42875453-42875250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):21, 130

               
               
               Conread position:217-443
               
               
               Cow position:chrX:35392062-35392289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:171
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):19, 11

               
               
               Conread position:217-449
               
               
               Cow position:chrX:5063476-5063250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):134, 14

               
               
               Conread position:217-449
               
               
               Cow position:chrX:42894165-42893923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):104, 128

               
               
               Conread position:217-562
               
               
               Cow position:chrX:24332020-24331665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:244
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):111, 199

               
               
               Conread position:217-618
               
               
               Cow position:chrX:30133078-30133498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 55

               
               
               Conread position:217-631
               
               
               Cow position:chrX:40826503-40826929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:289
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):13, 108

               
               
               Conread position:217-632
               
               
               Cow position:chrX:8869161-8869592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:294
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):104, 131

               
               
               Conread position:217-632
               
               
               Cow position:chrX:17231983-17231551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:299
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):14, 148

               
               
               Conread position:217-632
               
               
               Cow position:chrX:27508781-27509203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 137

               
               
               Conread position:217-632
               
               
               Cow position:chrX:31729682-31729273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:293
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):22, 129

               
               
               Conread position:217-632
               
               
               Cow position:chrX:33466862-33466430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 14

               
               
               Conread position:217-632
               
               
               Cow position:chrX:38935526-38935098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:292
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):14, 145

               
               
               Conread position:217-632
               
               
               Cow position:chrX:41790184-41790628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:303
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):102, 132

               
               
               Conread position:217-632
               
               
               Cow position:chrX:45110894-45110472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:270
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):96, 131

               
               
               Conread position:217-632
               
               
               Cow position:chrX:46532249-46532693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 12

               
               
               Conread position:217-632
               
               
               Cow position:chrX:47484013-47484455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:289
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):20, 128

               
               
               Conread position:217-643
               
               
               Cow position:chrX:7351544-7351102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 46

               
               
               Conread position:217-645
               
               
               Cow position:chrX:44055046-44054605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 199

               
               
               Conread position:218-317
               
               
               Cow position:chrX:22134779-22134878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:100
               
               
               Alignm identity:83
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:218-322
               
               
               Cow position:chrX:26850183-26850287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:86
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:218-325
               
               
               Cow position:chrX:783689-783580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:91
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:218-405
               
               
               Cow position:chrX:11325867-11326050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:218-405
               
               
               Cow position:chrX:16763691-16763878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):95, 13

               
               
               Conread position:218-406
               
               
               Cow position:chrX:41454711-41454908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):99, 142

               
               
               Conread position:218-410
               
               
               Cow position:chrX:6389319-6389124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):89, 13

               
               
               Conread position:218-413
               
               
               Cow position:chrX:8642284-8642086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):100, 10

               
               
               Conread position:218-438
               
               
               Cow position:chrX:42449769-42450004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):20, 143

               
               
               Conread position:218-448
               
               
               Cow position:chrX:35430999-35431237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):98, 125

               
               
               Conread position:218-461
               
               
               Cow position:chrX:4327941-4328194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):39, 14

               
               
               Conread position:218-537
               
               
               Cow position:chrX:12095528-12095861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:244
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):19, 142

               
               
               Conread position:218-554
               
               
               Cow position:chrX:40108270-40108611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):33, 254

               
               
               Conread position:218-584
               
               
               Cow position:chrX:41027402-41027022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 141

               
               
               Conread position:218-619
               
               
               Cow position:chrX:25207619-25208017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:283
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):97, 136

               
               
               Conread position:218-620
               
               
               Cow position:chrX:4399358-4398954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 13

               
               
               Conread position:218-622
               
               
               Cow position:chrX:22387001-22387421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:292
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):88, 45

               
               
               Conread position:218-622
               
               
               Cow position:chrX:35885489-35885903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:275
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):18, 97

               
               
               Conread position:218-624
               
               
               Cow position:chrX:18486045-18485619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:280
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):103, 141

               
               
               Conread position:218-625
               
               
               Cow position:chrX:27442295-27442732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:297
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):19, 143

               
               
               Conread position:218-627
               
               
               Cow position:chrX:36061405-36060973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:279
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):13, 198

               
               
               Conread position:218-632
               
               
               Cow position:chrX:4268828-4269250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 134

               
               
               Conread position:218-632
               
               
               Cow position:chrX:4632612-4633034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 143

               
               
               Conread position:218-632
               
               
               Cow position:chrX:7722216-7721801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):253, 45

               
               
               Conread position:218-632
               
               
               Cow position:chrX:36976192-36975766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 23

               
               
               Conread position:218-633
               
               
               Cow position:chrX:12290962-12290551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 141

               
               
               Conread position:218-645
               
               
               Cow position:chrX:20887407-20887841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 46

               
               
               Conread position:219-325
               
               
               Cow position:chrX:3130885-3130778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:89
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:219-390
               
               
               Cow position:chrX:11674353-11674172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):99, 142

               
               
               Conread position:219-418
               
               
               Cow position:chrX:48558986-48558780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):100, 11

               
               
               Conread position:219-453
               
               
               Cow position:chrX:27668723-27668962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):101, 12

               
               
               Conread position:219-589
               
               
               Cow position:chrX:41871298-41870933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:236
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):182, 68

               
               
               Conread position:219-628
               
               
               Cow position:chrX:3580186-3579765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 240

               
               
               Conread position:219-629
               
               
               Cow position:chrX:34441210-34441632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 142

               
               
               Conread position:219-629
               
               
               Cow position:chrX:45502375-45501968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:287
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):93, 11

               
               
               Conread position:219-631
               
               
               Cow position:chrX:37489967-37489548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:302
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):83, 12

               
               
               Conread position:219-632
               
               
               Cow position:chrX:9634950-9635364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:286
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):19, 51

               
               
               Conread position:219-632
               
               
               Cow position:chrX:15146957-15147370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:290
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):20, 48

               
               
               Conread position:219-632
               
               
               Cow position:chrX:34753941-34754375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:292
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):68, 42

               
               
               Conread position:219-632
               
               
               Cow position:chrX:44961997-44961564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:286
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):8, 256

               
               
               Conread position:220-326
               
               
               Cow position:chrX:19161892-19161996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:91
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:220-405
               
               
               Cow position:chrX:12437041-12437223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):7, 74

               
               
               Conread position:220-594
               
               
               Cow position:chrX:29723991-29723596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:273
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):106, 209

               
               
               Conread position:220-626
               
               
               Cow position:chrX:47186086-47186498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:273
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):100, 195

               
               
               Conread position:220-628
               
               
               Cow position:chrX:9650787-9651225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:277
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):101, 255

               
               
               Conread position:220-632
               
               
               Cow position:chrX:34554965-34554545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 128

               
               
               Conread position:220-632
               
               
               Cow position:chrX:42380875-42381283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:280
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):89, 9

               
               
               Conread position:221-400
               
               
               Cow position:chrX:42432272-42432456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):16, 108

               
               
               Conread position:221-451
               
               
               Cow position:chrX:26843028-26843272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):77, 7

               
               
               Conread position:221-588
               
               
               Cow position:chrX:11614914-11614560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:252
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):103, 43

               
               
               Conread position:221-624
               
               
               Cow position:chrX:26493243-26492827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:291
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):97, 7

               
               
               Conread position:221-632
               
               
               Cow position:chrX:5872573-5872130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 146

               
               
               Conread position:221-632
               
               
               Cow position:chrX:25338402-25337996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:278
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):187, 9

               
               
               Conread position:221-632
               
               
               Cow position:chrX:32019893-32020305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:291
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):15, 141

               
               
               Conread position:222-420
               
               
               Cow position:chrX:3806917-3806714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):16, 122

               
               
               Conread position:222-632
               
               
               Cow position:chrX:6674698-6675108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:276
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):145, 8

               
               
               Conread position:222-645
               
               
               Cow position:chrX:41238126-41238562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:296
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):90, 9

               
               
               Conread position:223-631
               
               
               Cow position:chrX:47248559-47248967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:263
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):14, 129

               
               
               Conread position:224-593
               
               
               Cow position:chrX:47279700-47280076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:244
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):127, 165

               
               
               Conread position:224-645
               
               
               Cow position:chrX:37780873-37781314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:298
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):23, 54

               
               
               Conread position:225-539
               
               
               Cow position:chrX:33654607-33654931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:232
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):11, 127

               
               
               Conread position:225-631
               
               
               Cow position:chrX:29541993-29542401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:275
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):134, 103

               
               
               Conread position:226-631
               
               
               Cow position:chrX:29121256-29120874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:274
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):9, 54

               
               
               Conread position:227-593
               
               
               Cow position:chrX:34314254-34313889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:241
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):86, 197

               
               
               Conread position:227-632
               
               
               Cow position:chrX:17662388-17662780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:280
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):195, 79

               
               
               Conread position:228-324
               
               
               Cow position:chrX:8759856-8759759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:98
               
               
               Alignm identity:84
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:228-325
               
               
               Cow position:chrX:11670920-11670822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:99
               
               
               Alignm identity:84
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:228-395
               
               
               Cow position:chrX:51670-51844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):91, 120

               
               
               Conread position:228-396
               
               
               Cow position:chrX:4169795-4169975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):8, 125

               
               
               Conread position:228-405
               
               
               Cow position:chrX:42461394-42461571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):8, 117

               
               
               Conread position:228-414
               
               
               Cow position:chrX:19717744-19717557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):8, 36

               
               
               Conread position:228-419
               
               
               Cow position:chrX:17498556-17498355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):8, 123

               
               
               Conread position:228-423
               
               
               Cow position:chrX:24054893-24054709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):48, 73

               
               
               Conread position:228-434
               
               
               Cow position:chrX:34398551-34398766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):92, 132

               
               
               Conread position:228-455
               
               
               Cow position:chrX:16984868-16984635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):5, 118

               
               
               Conread position:228-455
               
               
               Cow position:chrX:28940476-28940244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):79, 189

               
               
               Conread position:228-629
               
               
               Cow position:chrX:35269087-35268707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 8

               
               
               Conread position:228-631
               
               
               Cow position:chrX:22813298-22812878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:280
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):8, 191

               
               
               Conread position:228-632
               
               
               Cow position:chrX:3654836-3654421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 62

               
               
               Conread position:228-632
               
               
               Cow position:chrX:11844003-11844426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:286
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):8, 136

               
               
               Conread position:228-632
               
               
               Cow position:chrX:20339662-20340074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 37

               
               
               Conread position:228-632
               
               
               Cow position:chrX:31442607-31443005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 93

               
               
               Conread position:228-632
               
               
               Cow position:chrX:33854994-33855416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:278
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):96, 35

               
               
               Conread position:228-632
               
               
               Cow position:chrX:34565517-34565109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:291
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):71, 123

               
               
               Conread position:228-635
               
               
               Cow position:chrX:32330405-32329971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:293
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):10, 133

               
               
               Conread position:228-665
               
               
               Cow position:chrX:40183122-40183565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:293
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):96, 132

               
               
               Conread position:229-632
               
               
               Cow position:chrX:38964328-38963923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 68

               
               
               Conread position:231-632
               
               
               Cow position:chrX:2301152-2300750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:259
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):56, 143

               
               
               Conread position:232-325
               
               
               Cow position:chrX:19356692-19356599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:94
               
               
               Alignm identity:80
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:232-389
               
               
               Cow position:chrX:1938241-1938077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):87, 112

               
               
               Conread position:232-403
               
               
               Cow position:chrX:25925428-25925593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:232-404
               
               
               Cow position:chrX:37867482-37867301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):89, 124

               
               
               Conread position:232-405
               
               
               Cow position:chrX:46068536-46068712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):89, 18

               
               
               Conread position:232-412
               
               
               Cow position:chrX:597250-597435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):122, 96

               
               
               Conread position:232-420
               
               
               Cow position:chrX:18196228-18196049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):22, 96

               
               
               Conread position:232-421
               
               
               Cow position:chrX:48822114-48822311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):89, 117

               
               
               Conread position:232-438
               
               
               Cow position:chrX:43150659-43150445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):95, 126

               
               
               Conread position:232-499
               
               
               Cow position:chrX:32877151-32877420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):78, 31

               
               
               Conread position:232-524
               
               
               Cow position:chrX:36866401-36866096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:222
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):87, 119

               
               
               Conread position:232-538
               
               
               Cow position:chrX:21328142-21327817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:223
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:232-542
               
               
               Cow position:chrX:40680843-40680518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 127

               
               
               Conread position:232-579
               
               
               Cow position:chrX:43115377-43115021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):83, 218

               
               
               Conread position:232-620
               
               
               Cow position:chrX:34792095-34792482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:264
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):81, 31

               
               
               Conread position:232-627
               
               
               Cow position:chrX:25570776-25571172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:269
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):102, 66

               
               
               Conread position:232-627
               
               
               Cow position:chrX:34377167-34376777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:263
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):37, 45

               
               
               Conread position:232-630
               
               
               Cow position:chrX:27393790-27394195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 31

               
               
               Conread position:232-631
               
               
               Cow position:chrX:13177256-13177647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:268
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):89, 31

               
               
               Conread position:232-631
               
               
               Cow position:chrX:42492293-42492697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 120

               
               
               Conread position:232-632
               
               
               Cow position:chrX:161628-161238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:277
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):71, 31

               
               
               Conread position:232-632
               
               
               Cow position:chrX:1503536-1503155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:263
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):11, 68

               
               
               Conread position:232-632
               
               
               Cow position:chrX:5637951-5638353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:279
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):91, 104

               
               
               Conread position:232-632
               
               
               Cow position:chrX:9201771-9201363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 92

               
               
               Conread position:232-632
               
               
               Cow position:chrX:9425534-9425925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:276
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):92, 57

               
               
               Conread position:232-632
               
               
               Cow position:chrX:12250043-12249623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:284
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):61, 106

               
               
               Conread position:232-632
               
               
               Cow position:chrX:12979607-12980014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:278
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):82, 260

               
               
               Conread position:232-632
               
               
               Cow position:chrX:13913303-13912897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:271
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):102, 76

               
               
               Conread position:232-632
               
               
               Cow position:chrX:14883729-14884145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:274
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):41, 37

               
               
               Conread position:232-632
               
               
               Cow position:chrX:27431696-27432102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 43

               
               
               Conread position:232-632
               
               
               Cow position:chrX:27705815-27705406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 48

               
               
               Conread position:232-632
               
               
               Cow position:chrX:32420438-32420035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 15

               
               
               Conread position:232-632
               
               
               Cow position:chrX:36283568-36283162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 183

               
               
               Conread position:232-632
               
               
               Cow position:chrX:38094298-38094709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 34

               
               
               Conread position:232-632
               
               
               Cow position:chrX:38218941-38218524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 324

               
               
               Conread position:232-632
               
               
               Cow position:chrX:38549675-38549265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 118

               
               
               Conread position:232-632
               
               
               Cow position:chrX:40035214-40035628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 15

               
               
               Conread position:232-632
               
               
               Cow position:chrX:42994824-42994431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:271
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):31, 119

               
               
               Conread position:232-635
               
               
               Cow position:chrX:25714003-25713607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:277
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):182, 67

               
               
               Conread position:232-645
               
               
               Cow position:chrX:46072602-46073017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 75

               
               
               Conread position:233-404
               
               
               Cow position:chrX:41166602-41166777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):91, 112

               
               
               Conread position:233-417
               
               
               Cow position:chrX:876620-876809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):100, 53

               
               
               Conread position:233-446
               
               
               Cow position:chrX:32910324-32910106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):74, 114

               
               
               Conread position:233-631
               
               
               Cow position:chrX:32821267-32820847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:291
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):66, 238

               
               
               Conread position:233-632
               
               
               Cow position:chrX:11938726-11939110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:266
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):190, 74

               
               
               Conread position:233-632
               
               
               Cow position:chrX:23497470-23497848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:276
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):200, 74

               
               
               Conread position:234-539
               
               
               Cow position:chrX:29050468-29050157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):81, 39

               
               
               Conread position:235-413
               
               
               Cow position:chrX:29478947-29478764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):79, 113

               
               
               Conread position:235-497
               
               
               Cow position:chrX:4645689-4645958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):84, 123

               
               
               Conread position:235-632
               
               
               Cow position:chrX:15485408-15485810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:267
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):90, 126

               
               
               Conread position:235-632
               
               
               Cow position:chrX:16541431-16541861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:287
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):92, 126

               
               
               Conread position:235-632
               
               
               Cow position:chrX:41526309-41526707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:257
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):86, 40

               
               
               Conread position:236-326
               
               
               Cow position:chrX:10479974-10479884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:91
               
               
               Alignm identity:77
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:236-421
               
               
               Cow position:chrX:27074827-27075020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):71, 179

               
               
               Conread position:236-423
               
               
               Cow position:chrX:11653991-11653800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):85, 110

               
               
               Conread position:236-569
               
               
               Cow position:chrX:26881338-26881688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):74, 43

               
               
               Conread position:236-595
               
               
               Cow position:chrX:21986077-21986438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):166, 74

               
               
               Conread position:236-631
               
               
               Cow position:chrX:22075019-22074618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 25

               
               
               Conread position:236-631
               
               
               Cow position:chrX:22482465-22482871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:261
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):90, 154

               
               
               Conread position:236-631
               
               
               Cow position:chrX:42011485-42011097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:277
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):172, 63

               
               
               Conread position:236-632
               
               
               Cow position:chrX:4825624-4826011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:264
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):137, 67

               
               
               Conread position:236-632
               
               
               Cow position:chrX:7278130-7277736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:276
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:236-632
               
               
               Cow position:chrX:30420743-30421123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:271
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):359, 70

               
               
               Conread position:236-632
               
               
               Cow position:chrX:35413818-35413449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:265
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):261, 33

               
               
               Conread position:236-645
               
               
               Cow position:chrX:15006935-15007347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 57

               
               
               Conread position:237-418
               
               
               Cow position:chrX:35681790-35681602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):84, 112

               
               
               Conread position:237-632
               
               
               Cow position:chrX:7646459-7646077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:264
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):177, 78

               
               
               Conread position:237-632
               
               
               Cow position:chrX:29601606-29602016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 112

               
               
               Conread position:242-537
               
               
               Cow position:chrX:20881743-20882025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):107, 57

               
               
               Conread position:242-581
               
               
               Cow position:chrX:40685111-40685463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):57, 234

               
               
               Conread position:242-632
               
               
               Cow position:chrX:19930841-19930472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:272
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):197, 57

               
               
               Conread position:242-632
               
               
               Cow position:chrX:31260407-31260813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:278
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):75, 17

               
               
               Conread position:242-632
               
               
               Cow position:chrX:38642460-38642074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:273
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):70, 29

               
               
               Conread position:242-632
               
               
               Cow position:chrX:40567823-40567416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:277
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):155, 64

               
               
               Conread position:242-637
               
               
               Cow position:chrX:20152066-20151663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:277
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):58, 71

               
               
               Conread position:243-441
               
               
               Cow position:chrX:42836398-42836188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):76, 106

               
               
               Conread position:243-621
               
               
               Cow position:chrX:6407761-6407376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 144

               
               
               Conread position:243-632
               
               
               Cow position:chrX:6488782-6488403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:269
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):169, 77

               
               
               Conread position:243-632
               
               
               Cow position:chrX:14973540-14973918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:264
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):246, 63

               
               
               Conread position:243-632
               
               
               Cow position:chrX:34544003-34543604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 109

               
               
               Conread position:246-420
               
               
               Cow position:chrX:41809961-41810138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):66, 96

               
               
               Conread position:246-421
               
               
               Cow position:chrX:31986358-31986545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):61, 103

               
               
               Conread position:246-447
               
               
               Cow position:chrX:30824199-30823996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):69, 95

               
               
               Conread position:246-567
               
               
               Cow position:chrX:5679716-5680053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):40, 104

               
               
               Conread position:246-606
               
               
               Cow position:chrX:27228343-27227966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 172

               
               
               Conread position:246-624
               
               
               Cow position:chrX:4278905-4279290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:272
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):32, 20

               
               
               Conread position:246-629
               
               
               Cow position:chrX:37119789-37119419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:256
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):169, 56

               
               
               Conread position:246-630
               
               
               Cow position:chrX:7337061-7336645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:261
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):18, 110

               
               
               Conread position:246-630
               
               
               Cow position:chrX:27515073-27514687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:267
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):78, 115

               
               
               Conread position:246-631
               
               
               Cow position:chrX:43779651-43780035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:275
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):140, 46

               
               
               Conread position:246-632
               
               
               Cow position:chrX:4768942-4768567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:268
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):61, 149

               
               
               Conread position:246-632
               
               
               Cow position:chrX:10831267-10831680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 106

               
               
               Conread position:246-632
               
               
               Cow position:chrX:15597242-15596854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:262
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):81, 170

               
               
               Conread position:246-632
               
               
               Cow position:chrX:29544672-29545063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 23

               
               
               Conread position:246-632
               
               
               Cow position:chrX:31436683-31436299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:262
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):69, 214

               
               
               Conread position:246-632
               
               
               Cow position:chrX:47344513-47344111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:271
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):63, 109

               
               
               Conread position:247-423
               
               
               Cow position:chrX:47378917-47379092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):59, 82

               
               
               Conread position:247-631
               
               
               Cow position:chrX:1615845-1616230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 46

               
               
               Conread position:247-632
               
               
               Cow position:chrX:8900232-8899841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:261
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):74, 161

               
               
               Conread position:247-632
               
               
               Cow position:chrX:28877953-28878342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:285
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):52, 121

               
               
               Conread position:248-452
               
               
               Cow position:chrX:1360294-1360089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):65, 103

               
               
               Conread position:248-631
               
               
               Cow position:chrX:34238935-34238538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:275
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):81, 267

               
               
               Conread position:248-632
               
               
               Cow position:chrX:31340902-31340521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:257
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):160, 38

               
               
               Conread position:248-633
               
               
               Cow position:chrX:12309173-12309573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 101

               
               
               Conread position:248-645
               
               
               Cow position:chrX:1499866-1499473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 65

               
               
               Conread position:248-645
               
               
               Cow position:chrX:8731306-8730883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:285
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):79, 111

               
               
               Conread position:249-632
               
               
               Cow position:chrX:842366-841975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:268
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):77, 15

               
               
               Conread position:249-632
               
               
               Cow position:chrX:13868915-13868510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:283
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):49, 111

               
               
               Conread position:250-632
               
               
               Cow position:chrX:35543094-35542708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:266
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):66, 158

               
               
               Conread position:251-418
               
               
               Cow position:chrX:28850927-28850761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):61, 102

               
               
               Conread position:251-580
               
               
               Cow position:chrX:31294360-31294688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:241
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):62, 105

               
               
               Conread position:251-632
               
               
               Cow position:chrX:34503138-34502735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:279
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):19, 108

               
               
               Conread position:252-632
               
               
               Cow position:chrX:46770754-46771153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:266
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):59, 95

               
               
               Conread position:254-633
               
               
               Cow position:chrX:23513801-23514203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:281
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):49, 217

               
               
               Conread position:257-632
               
               
               Cow position:chrX:1055178-1055573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:272
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):69, 101

               
               
               Conread position:267-632
               
               
               Cow position:chrX:34662653-34663027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:258
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):57, 91

               
               
               Conread position:271-627
               
               
               Cow position:chrX:31252597-31252239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:248
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):56, 80

               
               
               Conread position:271-631
               
               
               Cow position:chrX:38853379-38853014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):14, 146

               
               
               Conread position:273-629
               
               
               Cow position:chrX:44656775-44657145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:251
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):48, 72

               
               
               Conread position:276-632
               
               
               Cow position:chrX:16416687-16416323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:257
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):32, 73

               
               
               Conread position:280-627
               
               
               Cow position:chrX:24287753-24288111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:256
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):39, 78

               
               
               Conread position:281-632
               
               
               Cow position:chrX:17888251-17888589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:241
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):32, 62

               
               
               Conread position:291-632
               
               
               Cow position:chrX:37836742-37836404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:232
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):22, 64

               
               
               Conread position:293-632
               
               
               Cow position:chrX:38006608-38006951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):28, 17

               
               
               Conread position:295-632
               
               
               Cow position:chrX:47481952-47481616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):43, 25

               
               
               Conread position:298-632
               
               
               Cow position:chrX:6690107-6690431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):141, 43

               
               
               Conread position:298-632
               
               
               Cow position:chrX:18694783-18695103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:240
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):116, 18

               
               
               Conread position:298-632
               
               
               Cow position:chrX:33493928-33493591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:220
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):97, 19

               
               
               Conread position:298-632
               
               
               Cow position:chrX:42235370-42235717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):15, 44

               
               
               Conread position:299-551
               
               
               Cow position:chrX:16348419-16348672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):25, 35

               
               
               Conread position:299-584
               
               
               Cow position:chrX:616106-616397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):84, 156

               
               
               Conread position:299-631
               
               
               Cow position:chrX:23785800-23785471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:239
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):33, 69

               
               
               Conread position:299-632
               
               
               Cow position:chrX:5017269-5017591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:221
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):198, 52

               
               
               Conread position:299-632
               
               
               Cow position:chrX:17726130-17725791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):13, 158

               
               
               Conread position:299-632
               
               
               Cow position:chrX:23092025-23091698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:233
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):12, 109

               
               
               Conread position:299-632
               
               
               Cow position:chrX:43730066-43730398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 48

               
               
               Conread position:300-539
               
               
               Cow position:chrX:29549399-29549637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):12, 21

               
               
               Conread position:303-632
               
               
               Cow position:chrX:42171149-42171483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):101, 17

               
               
               Conread position:303-635
               
               
               Cow position:chrX:30543135-30543477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:227
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):61, 66

               
               
               Conread position:304-632
               
               
               Cow position:chrX:7162203-7161888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:224
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):56, 16

               
               
               Conread position:311-632
               
               
               Cow position:chrX:37910586-37910269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:226
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):22, 31

               
               
               Conread position:311-633
               
               
               Cow position:chrX:9416544-9416877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 38

               
               
               Conread position:316-632
               
               
               Cow position:chrX:917233-917555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:218
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):98, 25

               
               
               Conread position:318-632
               
               
               Cow position:chrX:39545848-39546157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):156, 19

               
               
               Conread position:318-632
               
               
               Cow position:chrX:42469807-42470120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):84, 173

               
               
               Conread position:319-586
               
               
               Cow position:chrX:37986358-37986096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):153, 84

               
               
               Conread position:319-618
               
               
               Cow position:chrX:40269625-40269315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):67, 154

               
               
               Conread position:319-631
               
               
               Cow position:chrX:37232540-37232227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):15, 29

               
               
               Conread position:319-632
               
               
               Cow position:chrX:878247-878555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):82, 183

               
               
               Conread position:319-632
               
               
               Cow position:chrX:11082489-11082797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):15, 23

               
               
               Conread position:319-632
               
               
               Cow position:chrX:31312162-31311842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):89, 136

               
               
               Conread position:319-632
               
               
               Cow position:chrX:40557546-40557859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):87, 125

               
               
               Conread position:319-645
               
               
               Cow position:chrX:39558216-39558543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:231
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):85, 48

               
               
               Conread position:320-567
               
               
               Cow position:chrX:5679440-5679684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):75, 132

               
               
               Conread position:320-598
               
               
               Cow position:chrX:9365544-9365823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):87, 132

               
               
               Conread position:320-632
               
               
               Cow position:chrX:11717651-11717966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):89, 214

               
               
               Conread position:320-632
               
               
               Cow position:chrX:14599664-14599346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:219
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):137, 29

               
               
               Conread position:320-632
               
               
               Cow position:chrX:40480735-40481056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):41, 29

               
               
               Conread position:321-632
               
               
               Cow position:chrX:17542088-17541780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):46, 20

               
               
               Conread position:323-621
               
               
               Cow position:chrX:46433619-46433310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:225
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):91, 26

               
               
               Conread position:323-626
               
               
               Cow position:chrX:29680133-29680438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:220
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):86, 18

               
               
               Conread position:323-628
               
               
               Cow position:chrX:1514291-1514580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):100, 18

               
               
               Conread position:323-628
               
               
               Cow position:chrX:19690343-19690038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):91, 18

               
               
               Conread position:323-631
               
               
               Cow position:chrX:6278370-6278688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:227
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):81, 26

               
               
               Conread position:323-632
               
               
               Cow position:chrX:4043739-4044034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:219
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):99, 18

               
               
               Conread position:323-632
               
               
               Cow position:chrX:8797377-8797064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:225
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):174, 18

               
               
               Conread position:323-632
               
               
               Cow position:chrX:10411856-10412172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:227
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):15, 129

               
               
               Conread position:323-632
               
               
               Cow position:chrX:20697481-20697791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):23, 18

               
               
               Conread position:323-632
               
               
               Cow position:chrX:28134466-28134162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):91, 18

               
               
               Conread position:323-632
               
               
               Cow position:chrX:28865878-28866176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:204
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):114, 14

               
               
               Conread position:323-632
               
               
               Cow position:chrX:33640103-33639788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):91, 20

               
               
               Conread position:324-632
               
               
               Cow position:chrX:11073064-11073372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:218
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):78, 17

               
               
               Conread position:324-645
               
               
               Cow position:chrX:27516646-27516336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:231
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):22, 17

               
               
               Conread position:325-632
               
               
               Cow position:chrX:3130698-3130398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):82, 24

               
               
               Conread position:325-632
               
               
               Cow position:chrX:3488765-3489068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):97, 28

               
               
               Conread position:325-632
               
               
               Cow position:chrX:29289704-29289393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:215
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):83, 18

               
               
               Conread position:328-628
               
               
               Cow position:chrX:28111633-28111327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:203
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):80, 39

               
               
               Conread position:328-631
               
               
               Cow position:chrX:9041120-9041412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):86, 77

               
               
               Conread position:328-632
               
               
               Cow position:chrX:17042806-17042507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:202
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):86, 36

               
               
               Conread position:329-632
               
               
               Cow position:chrX:43049453-43049161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):38, 12

               
               
               Conread position:333-631
               
               
               Cow position:chrX:45993345-45993036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):43, 15

               
               
               Conread position:333-632
               
               
               Cow position:chrX:43527626-43527320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):69, 8

               
               
               Conread position:334-625
               
               
               Cow position:chrX:47300786-47301080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):64, 15

               
               
               Conread position:334-632
               
               
               Cow position:chrX:45403708-45404017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):71, 17

               
               
               Conread position:334-632
               
               
               Cow position:chrX:48652604-48652910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:199
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):64, 15

               
               
               Conread position:334-645
               
               
               Cow position:chrX:46722617-46722937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):64, 17

               
               
               Conread position:334-645
               
               
               Cow position:chrX:48194918-48195237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):73, 17

               
               
               Conread position:336-631
               
               
               Cow position:chrX:26625555-26625859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:221
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):72, 167

               
               
               Conread position:340-629
               
               
               Cow position:chrX:38936812-38936520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):65, 200

               
               
               Conread position:340-630
               
               
               Cow position:chrX:21004796-21004500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):68, 224

               
               
               Conread position:341-632
               
               
               Cow position:chrX:7497353-7497060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):119, 26

               
               
               Conread position:346-632
               
               
               Cow position:chrX:17630695-17630986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):27, 65

               
               
               Conread position:351-631
               
               
               Cow position:chrX:7572006-7571724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):51, 92

               
               
               Conread position:352-631
               
               
               Cow position:chrX:4865333-4865069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:352-632
               
               
               Cow position:chrX:2467984-2467696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):53, 119

               
               
               Conread position:353-624
               
               
               Cow position:chrX:24259480-24259757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):31, 58

               
               
               Conread position:355-632
               
               
               Cow position:chrX:23583658-23583375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):59, 54

               
               
               Conread position:356-632
               
               
               Cow position:chrX:27680494-27680218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):49, 168

               
               
               Conread position:356-645
               
               
               Cow position:chrX:26440689-26440976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):141, 60

               
               
               Conread position:357-632
               
               
               Cow position:chrX:15815179-15814914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):47, 86

               
               
               Conread position:358-648
               
               
               Cow position:chrX:40809787-40809487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:361-631
               
               
               Cow position:chrX:34402091-34401815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:361-632
               
               
               Cow position:chrX:37843808-37843537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):44, 12

               
               
               Conread position:366-632
               
               
               Cow position:chrX:12405295-12405560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):42, 89

               
               
               Conread position:366-632
               
               
               Cow position:chrX:24105710-24105443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):39, 86

               
               
               Conread position:367-632
               
               
               Cow position:chrX:13265542-13265803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):36, 65

               
               
               Conread position:367-632
               
               
               Cow position:chrX:42507563-42507830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):47, 40

               
               
               Conread position:368-632
               
               
               Cow position:chrX:36961718-36961452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):130, 39

               
               
               Conread position:369-628
               
               
               Cow position:chrX:13785280-13785537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):26, 220

               
               
               Conread position:370-632
               
               
               Cow position:chrX:618920-619191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):36, 85

               
               
               Conread position:373-621
               
               
               Cow position:chrX:27771887-27772133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):30, 81

               
               
               Conread position:373-633
               
               
               Cow position:chrX:11589509-11589773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):33, 79

               
               
               Conread position:375-632
               
               
               Cow position:chrX:38071689-38071954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):33, 81

               
               
               Conread position:379-632
               
               
               Cow position:chrX:37541191-37540941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):25, 51

               
               
               Conread position:379-645
               
               
               Cow position:chrX:6234376-6234645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:200
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):29, 77

               
               
               Conread position:384-625
               
               
               Cow position:chrX:20791747-20791994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):23, 46

               
               
               Conread position:385-631
               
               
               Cow position:chrX:14900666-14900904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):29, 22

               
               
               Conread position:386-556
               
               
               Cow position:chrX:35848627-35848454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):36, 20

               
               
               Conread position:388-633
               
               
               Cow position:chrX:3653816-3653579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):109, 17

               
               
               Conread position:393-631
               
               
               Cow position:chrX:42461686-42461928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):10, 63

               
               
               Conread position:394-645
               
               
               Cow position:chrX:41166904-41167161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):14, 68

               
               
               Conread position:396-632
               
               
               Cow position:chrX:9954195-9953958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):12, 64

               
               
               Conread position:397-630
               
               
               Cow position:chrX:47756875-47757110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):25, 53

               
               
               Conread position:398-632
               
               
               Cow position:chrX:23970433-23970205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):11, 91

               
               
               Conread position:399-632
               
               
               Cow position:chrX:35681393-35681163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):36, 52

               
               
               Conread position:402-632
               
               
               Cow position:chrX:15139501-15139728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):87, 44

               
               
               Conread position:402-632
               
               
               Cow position:chrX:42875029-42874794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:172
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):98, 50

               
               
               Conread position:403-644
               
               
               Cow position:chrX:9855343-9855105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):142, 48

               
               
               Conread position:404-632
               
               
               Cow position:chrX:41199149-41198921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):146, 7

               
               
               Conread position:410-632
               
               
               Cow position:chrX:9997296-9997517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):88, 40

               
               
               Conread position:411-627
               
               
               Cow position:chrX:12116084-12115861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):87, 44

               
               
               Conread position:411-631
               
               
               Cow position:chrX:17498122-17497914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):87, 47

               
               
               Conread position:411-631
               
               
               Cow position:chrX:40648023-40647795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):89, 37

               
               
               Conread position:411-631
               
               
               Cow position:chrX:41743951-41743730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):89, 40

               
               
               Conread position:411-645
               
               
               Cow position:chrX:35409689-35409469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):21, 41

               
               
               Conread position:412-629
               
               
               Cow position:chrX:26286017-26285799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):33, 44

               
               
               Conread position:412-632
               
               
               Cow position:chrX:28835866-28836085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):25, 19

               
               
               Conread position:413-633
               
               
               Cow position:chrX:17908253-17908468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):81, 38

               
               
               Conread position:416-633
               
               
               Cow position:chrX:24424355-24424572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):12, 21

               
               
               Conread position:422-631
               
               
               Cow position:chrX:29509413-29509626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):76, 18

               
               
               Conread position:429-626
               
               
               Cow position:chrX:34192692-34192499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:432-632
               
               
               Cow position:chrX:30832829-30833029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):33, 145

               
               
               Conread position:436-624
               
               
               Cow position:chrX:29563363-29563546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):107, 44

               
               
               Conread position:443-632
               
               
               Cow position:chrX:38439486-38439291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:443-650
               
               
               Cow position:chrX:44053265-44053057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):55, 12

               
               
               Conread position:446-672
               
               
               Cow position:chrX:35284626-35284399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):20, 149

               
               
               Conread position:448-632
               
               
               Cow position:chrX:20752258-20752076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):57, 128

               
               
               Conread position:455-629
               
               
               Cow position:chrX:14924997-14924819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):39, 25

               
               
               Conread position:455-630
               
               
               Cow position:chrX:37048581-37048761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):34, 89

               
               
               Conread position:458-632
               
               
               Cow position:chrX:7718847-7718671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):129, 100

               
               
               Conread position:458-632
               
               
               Cow position:chrX:46315385-46315564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):40, 9

               
               
               Conread position:463-629
               
               
               Cow position:chrX:19188926-19188756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:470-632
               
               
               Cow position:chrX:2383470-2383305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:471-632
               
               
               Cow position:chrX:25411821-25411653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):29, 83

               
               
               Conread position:471-632
               
               
               Cow position:chrX:33020464-33020302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):23, 10

               
               
               Conread position:471-632
               
               
               Cow position:chrX:38967628-38967467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):29, 90

               
               
               Conread position:475-632
               
               
               Cow position:chrX:40116397-40116238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:476-632
               
               
               Cow position:chrX:36778386-36778224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):29, 19

               
               
               Conread position:476-632
               
               
               Cow position:chrX:40452234-40452396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):35, 69

               
               
               Conread position:477-632
               
               
               Cow position:chrX:1505683-1505529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):62, 98

               
               
               Conread position:481-632
               
               
               Cow position:chrX:20710045-20709888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:485-633
               
               
               Cow position:chrX:48684260-48684407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):9, 100

               
               
               Conread position:492-632
               
               
               Cow position:chrX:877069-877207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):44, 68

               
               
               Conread position:492-632
               
               
               Cow position:chrX:4942797-4942933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:492-632
               
               
               Cow position:chrX:7806339-7806196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):88, 139

               
               
               Conread position:493-632
               
               
               Cow position:chrX:7361898-7362034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):25, 40

               
               
               Conread position:493-632
               
               
               Cow position:chrX:20582984-20582847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):79, 72

               
               
               Conread position:493-632
               
               
               Cow position:chrX:45414344-45414483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:495-618
               
               
               Cow position:chrX:41271253-41271377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:495-627
               
               
               Cow position:chrX:24201141-24201008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:104
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:495-629
               
               
               Cow position:chrX:2206596-2206724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):42, 60

               
               
               Conread position:495-629
               
               
               Cow position:chrX:30162951-30162816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:495-631
               
               
               Cow position:chrX:35273309-35273170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):88, 20

               
               
               Conread position:495-631
               
               
               Cow position:chrX:41403933-41403790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:109
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:495-631
               
               
               Cow position:chrX:41410481-41410338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:109
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:495-632
               
               
               Cow position:chrX:678612-678751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):91, 58

               
               
               Conread position:495-632
               
               
               Cow position:chrX:4123792-4123652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):42, 85

               
               
               Conread position:495-632
               
               
               Cow position:chrX:4750350-4750484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:495-632
               
               
               Cow position:chrX:16324010-16324147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):48, 79

               
               
               Conread position:495-632
               
               
               Cow position:chrX:19015392-19015259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:495-632
               
               
               Cow position:chrX:21665638-21665777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:113
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:495-632
               
               
               Cow position:chrX:25238128-25237993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):46, 24

               
               
               Conread position:495-632
               
               
               Cow position:chrX:26875929-26876066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:495-632
               
               
               Cow position:chrX:31256820-31256684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:112
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:495-632
               
               
               Cow position:chrX:35387948-35388089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:495-632
               
               
               Cow position:chrX:35609943-35609803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:114
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:495-632
               
               
               Cow position:chrX:42338988-42339119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:115
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:495-632
               
               
               Cow position:chrX:46429904-46430041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:105
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:495-635
               
               
               Cow position:chrX:36067967-36067833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:495-641
               
               
               Cow position:chrX:24149595-24149444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:496-632
               
               
               Cow position:chrX:44731551-44731411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:497-632
               
               
               Cow position:chrX:6640082-6639942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:497-632
               
               
               Cow position:chrX:23061398-23061270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:105
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:497-632
               
               
               Cow position:chrX:42499076-42499212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):69, 10

               
               
               Conread position:498-632
               
               
               Cow position:chrX:13191593-13191727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:501-632
               
               
               Cow position:chrX:11675013-11674882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:501-645
               
               
               Cow position:chrX:34270350-34270210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):42, 87

               
               
               Conread position:502-632
               
               
               Cow position:chrX:45874946-45874815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:105
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):39, 44

               
               
               Conread position:503-629
               
               
               Cow position:chrX:42855361-42855228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:505-632
               
               
               Cow position:chrX:29770229-29770362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:505-645
               
               
               Cow position:chrX:10437715-10437861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:511-632
               
               
               Cow position:chrX:48536724-48536849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:522-632
               
               
               Cow position:chrX:7382251-7382140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:90
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:537-632
               
               
               Cow position:chrX:18812166-18812071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:96
               
               
               Alignm identity:81
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0