Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8046L17.3 |
| Conread position: | 332-476 |
| Cow position: | chr10:9028022-9028167 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 134, 126 |
| Conread position: | 649-1011 |
| Cow position: | chr10:8996762-8996394 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 242 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 61, 212 |
| Conread position: | 323-446 |
| Cow position: | chr13:39980973-39981096 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 97 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 318-451 |
| Cow position: | chr14:3131106-3130973 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 104 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 323-446 |
| Cow position: | chr14:25871858-25871981 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 95 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 331-451 |
| Cow position: | chr14:25776409-25776529 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 288-629 |
| Cow position: | chr17:22472384-22472719 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 234 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 224, 167 |
| Conread position: | 322-466 |
| Cow position: | chr17:22507684-22507540 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 638-1012 |
| Cow position: | chr17:22473493-22473873 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 235 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 72, 342 |
| Conread position: | 663-1011 |
| Cow position: | chr17:22473266-22473620 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 239 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 283-447 |
| Cow position: | chr18:50267401-50267566 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 117 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 293-451 |
| Cow position: | chr18:33069698-33069539 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 26, 19 |
| Conread position: | 306-451 |
| Cow position: | chr18:53589607-53589462 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 108 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 318-451 |
| Cow position: | chr18:50077702-50077835 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 99 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 321-447 |
| Cow position: | chr18:50278845-50278971 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 321-451 |
| Cow position: | chr18:43143692-43143822 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 322-451 |
| Cow position: | chr18:42754455-42754326 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 98 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 322-451 |
| Cow position: | chr18:56332267-56332138 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 100 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 322-461 |
| Cow position: | chr18:51844477-51844338 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 12, 7 |
| Conread position: | 322-467 |
| Cow position: | chr18:51867650-51867795 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 12, 7 |
| Conread position: | 323-449 |
| Cow position: | chr18:52015248-52015122 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 323-483 |
| Cow position: | chr18:42728293-42728132 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 117 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 152, 0 |
| Conread position: | 332-461 |
| Cow position: | chr18:51819663-51819534 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 97 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 649-1011 |
| Cow position: | chr18:40324797-40324429 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 235 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 64, 181 |
| Conread position: | 649-1012 |
| Cow position: | chr18:43093583-43093214 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 225 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 650-1011 |
| Cow position: | chr18:44398435-44398068 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 63, 322 |
| Conread position: | 323-446 |
| Cow position: | chr19:20667687-20667810 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 323-451 |
| Cow position: | chr19:20638202-20638074 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 451-547 |
| Cow position: | chr19:20637656-20637560 (view UCSC Genome Browser custom track) |
| Alignm length: | 97 |
| Alignm identity: | 84 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 545-632 |
| Cow position: | chr19:20637193-20637106 (view UCSC Genome Browser custom track) |
| Alignm length: | 88 |
| Alignm identity: | 76 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 624-1010 |
| Cow position: | chr19:20635571-20635179 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 265 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 84, 139 |
| Conread position: | 630-1116 |
| Cow position: | chr19:20636132-20635649 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 253, 271 |
| Conread position: | 727-1011 |
| Cow position: | chr19:20635633-20635346 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 182 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 136, 127 |
| Conread position: | 322-451 |
| Cow position: | chr2:86463160-86463289 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 322-451 |
| Cow position: | chr22:14439807-14439936 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 322-451 |
| Cow position: | chr22:14465233-14465362 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 323-451 |
| Cow position: | chr22:14426736-14426864 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 332-461 |
| Cow position: | chr22:12541205-12541335 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 649-1009 |
| Cow position: | chr23:24626309-24626675 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 6, 16 |
| Conread position: | 322-482 |
| Cow position: | chr25:23415295-23415457 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 649-920 |
| Cow position: | chr28:9253355-9253633 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 67, 61 |
| Conread position: | 323-451 |
| Cow position: | chr3:68022140-68022268 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 318-451 |
| Cow position: | chr6:49387724-49387857 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 56, 64 |
| Conread position: | 322-451 |
| Cow position: | chr6:49358204-49358333 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 99 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 337-507 |
| Cow position: | chr6:33795563-33795396 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 638-1011 |
| Cow position: | chr6:49340645-49341024 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 235 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 638-1011 |
| Cow position: | chr6:49340981-49341360 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 72, 145 |
| Conread position: | 639-1021 |
| Cow position: | chr6:49340394-49340782 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 242 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 77, 68 |
| Conread position: | 649-1015 |
| Cow position: | chr6:49340908-49341280 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 243 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 64, 137 |
| Conread position: | 318-451 |
| Cow position: | chr7:42881432-42881299 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 101 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 323-445 |
| Cow position: | chr7:8323770-8323892 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 111, 104 |
| Conread position: | 323-449 |
| Cow position: | chr7:11488091-11488217 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 102 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 331-451 |
| Cow position: | chr7:18387060-18387180 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 638-853 |
| Cow position: | chr7:11600694-11600476 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 149 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 75, 185 |
| Conread position: | 638-1010 |
| Cow position: | chr7:8325562-8325940 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 226 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 649-1011 |
| Cow position: | chr7:3180201-3180569 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 229 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 61, 174 |
| Conread position: | 649-1012 |
| Cow position: | chr7:11601103-11600734 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 234 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 64, 174 |
| Conread position: | 714-1011 |
| Cow position: | chr7:8277916-8278216 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 192 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 66, 51 |
| Conread position: | 729-994 |
| Cow position: | chr7:8324816-8325084 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 54, 49 |
| Conread position: | 318-451 |
| Cow position: | chr8:45148248-45148381 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 102 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 649-1007 |
| Cow position: | chr8:45201438-45201802 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 230 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 64, 144 |
| Conread position: | 651-1011 |
| Cow position: | chr8:45200936-45201302 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 230 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 52, 43 |
| Conread position: | 322-447 |
| Cow position: | chrX:29072746-29072621 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 97 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 323-447 |
| Cow position: | chrX:29040693-29040817 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |