Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8047B20.5 |
| Conread position: | 1-238 |
| Cow position: | chr10:37203437-37203684 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 79, 181 |
| Conread position: | 2-224 |
| Cow position: | chr10:67931044-67930819 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 158 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 77, 165 |
| Conread position: | 2-236 |
| Cow position: | chr10:45631062-45630828 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 108, 7 |
| Conread position: | 2-250 |
| Cow position: | chr10:63656839-63657094 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 71, 35 |
| Conread position: | 3-239 |
| Cow position: | chr10:52970424-52970666 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 41-240 |
| Cow position: | chr10:328361-328560 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 176, 99 |
| Conread position: | 1-242 |
| Cow position: | chr11:81364194-81364438 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 172, 32 |
| Conread position: | 2-249 |
| Cow position: | chr11:39609181-39608931 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 168 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 174, 162 |
| Conread position: | 4-210 |
| Cow position: | chr11:15938170-15937963 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 35, 90 |
| Conread position: | 7-237 |
| Cow position: | chr11:39369625-39369394 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 198, 169 |
| Conread position: | 7-239 |
| Cow position: | chr11:85039309-85039543 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 22, 48 |
| Conread position: | 1-173 |
| Cow position: | chr12:6743145-6742974 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 81, 31 |
| Conread position: | 2-240 |
| Cow position: | chr12:42200536-42200292 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 29-241 |
| Cow position: | chr12:38762801-38762583 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 5, 60 |
| Conread position: | 2-239 |
| Cow position: | chr13:14181281-14181519 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 214, 183 |
| Conread position: | 4-239 |
| Cow position: | chr13:46596199-46596432 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 212, 19 |
| Conread position: | 2-238 |
| Cow position: | chr14:44809737-44809970 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 211, 138 |
| Conread position: | 2-239 |
| Cow position: | chr14:38308262-38308029 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 172, 68 |
| Conread position: | 42-238 |
| Cow position: | chr14:41674722-41674518 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 151 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 2-181 |
| Cow position: | chr15:1173853-1173675 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 2-240 |
| Cow position: | chr15:8583529-8583769 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 91, 30 |
| Conread position: | 3-240 |
| Cow position: | chr15:24508642-24508400 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 162, 104 |
| Conread position: | 4-237 |
| Cow position: | chr15:36138354-36138121 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 212, 83 |
| Conread position: | 1-238 |
| Cow position: | chr16:20639590-20639828 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 174 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 99, 32 |
| Conread position: | 2-169 |
| Cow position: | chr16:15422182-15422015 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-238 |
| Cow position: | chr16:53948089-53948325 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 174, 60 |
| Conread position: | 3-239 |
| Cow position: | chr16:6273098-6273333 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 43, 23 |
| Conread position: | 5-202 |
| Cow position: | chr16:28863850-28864045 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 119-240 |
| Cow position: | chr16:19840035-19840160 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 57, 72 |
| Conread position: | 1-238 |
| Cow position: | chr17:17751120-17751356 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 199, 157 |
| Conread position: | 1-240 |
| Cow position: | chr17:20652533-20652282 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 57, 23 |
| Conread position: | 2-239 |
| Cow position: | chr17:42301238-42301473 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 63, 30 |
| Conread position: | 4-225 |
| Cow position: | chr17:6233689-6233916 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 45, 29 |
| Conread position: | 4-257 |
| Cow position: | chr17:33832922-33832677 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 28, 39 |
| Conread position: | 1-235 |
| Cow position: | chr18:3389922-3390158 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 128, 15 |
| Conread position: | 2-240 |
| Cow position: | chr19:4359285-4359047 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 83, 92 |
| Conread position: | 2-238 |
| Cow position: | chr20:8761747-8761984 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 119, 52 |
| Conread position: | 2-256 |
| Cow position: | chr20:8427807-8427549 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 93, 55 |
| Conread position: | 4-238 |
| Cow position: | chr20:9344823-9345051 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 212, 168 |
| Conread position: | 4-238 |
| Cow position: | chr21:22871007-22870776 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 197, 38 |
| Conread position: | 5-225 |
| Cow position: | chr21:25160870-25161088 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 150 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 160, 106 |
| Conread position: | 12-239 |
| Cow position: | chr21:32326196-32326426 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 179, 128 |
| Conread position: | 4-240 |
| Cow position: | chr22:21314239-21314471 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 212, 12 |
| Conread position: | 81-212 |
| Cow position: | chr22:11604766-11604894 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 101 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-238 |
| Cow position: | chr23:21444032-21443793 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 215, 0 |
| Conread position: | 5-241 |
| Cow position: | chr23:31541983-31542218 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 208, 135 |
| Conread position: | 58-307 |
| Cow position: | chr23:38764270-38764009 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 178 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 118, 211 |
| Conread position: | 1-225 |
| Cow position: | chr24:44371613-44371386 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 73, 152 |
| Conread position: | 2-223 |
| Cow position: | chr24:27588114-27588338 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 110, 177 |
| Conread position: | 4-250 |
| Cow position: | chr24:15337468-15337220 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 165 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 110, 172 |
| Conread position: | 1-238 |
| Cow position: | chr26:31866830-31867067 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 141, 22 |
| Conread position: | 97-253 |
| Cow position: | chr26:27506322-27506483 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 3-240 |
| Cow position: | chr27:91047-91284 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 83, 74 |
| Conread position: | 5-238 |
| Cow position: | chr27:4287493-4287256 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 39, 152 |
| Conread position: | 2-183 |
| Cow position: | chr28:33234295-33234476 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-237 |
| Cow position: | chr28:23093355-23093583 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 214, 66 |
| Conread position: | 2-238 |
| Cow position: | chr28:17598499-17598263 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 203, 88 |
| Conread position: | 2-241 |
| Cow position: | chr28:8109376-8109610 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 214, 72 |
| Conread position: | 2-241 |
| Cow position: | chr28:21134199-21133956 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 174, 0 |
| Conread position: | 91-239 |
| Cow position: | chr28:23827617-23827767 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 125, 0 |
| Conread position: | 2-200 |
| Cow position: | chr29:12497875-12497675 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 52, 30 |
| Conread position: | 2-239 |
| Cow position: | chr29:615188-615421 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 122, 50 |
| Conread position: | 2-180 |
| Cow position: | chr7:16035303-16035122 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 2-222 |
| Cow position: | chr7:68130804-68131024 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 94, 163 |
| Conread position: | 3-231 |
| Cow position: | chr7:24520745-24520974 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 82, 154 |
| Conread position: | 7-245 |
| Cow position: | chr7:29332795-29332558 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 209, 97 |
| Conread position: | 159-619 |
| Cow position: | chr7:16034855-16034388 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 83 |
| Conread position: | 1-258 |
| Cow position: | chr8:11666644-11666385 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 179, 16 |
| Conread position: | 2-238 |
| Cow position: | chr8:37446701-37446465 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 214, 174 |
| Conread position: | 53-227 |
| Cow position: | chr8:30343768-30343947 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 100-243 |
| Cow position: | chr8:49796156-49796305 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 2-240 |
| Cow position: | chr9:26060593-26060353 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 214, 0 |
| Conread position: | 14-260 |
| Cow position: | chr9:31887659-31887406 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 18, 151 |
| Conread position: | 2-212 |
| Cow position: | chrX:39884387-39884174 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 7, 178 |
| Conread position: | 2-238 |
| Cow position: | chrX:24555333-24555085 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 118, 138 |
| Conread position: | 10-212 |
| Cow position: | chrX:3553853-3554054 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 166, 0 |
| Conread position: | 10-239 |
| Cow position: | chrX:25283768-25283537 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 105, 16 |
| Conread position: | 44-239 |
| Cow position: | chrX:15589122-15589317 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 173, 14 |
| Conread position: | 53-237 |
| Cow position: | chrX:5928067-5928242 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 134 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 163, 49 |
| Conread position: | 53-239 |
| Cow position: | chrX:16293170-16293356 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 61, 124 |
| Conread position: | 91-240 |
| Cow position: | chrX:26946789-26946935 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 10, 0 |