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Cow genome map

           
Conread name:
           
Ss1.1-Pig4-TMW8048C15.3
        

               
Conread position:
               
300-658
               

               
Cow position:
               
chr10:2893540-2893901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
15, 45
               

               
Conread position:
               
303-670
               

               
Cow position:
               
chr10:17132189-17132587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
129, 0
               

               
Conread position:
               
307-488
               

               
Cow position:
               
chr10:31740849-31741034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
125, 165
               

               
Conread position:
               
312-579
               

               
Cow position:
               
chr10:39212906-39213176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
95, 87
               

               
Conread position:
               
312-668
               

               
Cow position:
               
chr10:12159075-12158690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
106, 122
               

               
Conread position:
               
312-670
               

               
Cow position:
               
chr10:49370122-49369753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
120, 18
               

               
Conread position:
               
315-670
               

               
Cow position:
               
chr10:62721409-62721046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
117, 28
               

               
Conread position:
               
324-489
               

               
Cow position:
               
chr10:8839072-8839235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
108, 30
               

               
Conread position:
               
324-489
               

               
Cow position:
               
chr10:59407636-59407799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
108, 41
               

               
Conread position:
               
324-601
               

               
Cow position:
               
chr10:60130117-60130410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
52, 129
               

               
Conread position:
               
324-646
               

               
Cow position:
               
chr10:54826204-54825867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
108, 131
               

               
Conread position:
               
324-661
               

               
Cow position:
               
chr10:52609597-52609952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
54, 47
               

               
Conread position:
               
324-661
               

               
Cow position:
               
chr10:56604291-56604618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
164, 12
               

               
Conread position:
               
324-666
               

               
Cow position:
               
chr10:30101556-30101210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
20, 131
               

               
Conread position:
               
324-666
               

               
Cow position:
               
chr10:48028218-48028574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
105, 40
               

               
Conread position:
               
324-673
               

               
Cow position:
               
chr10:5741964-5742339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
106, 94
               

               
Conread position:
               
324-673
               

               
Cow position:
               
chr10:9067878-9068242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
150, 90
               

               
Conread position:
               
324-674
               

               
Cow position:
               
chr10:25578869-25578512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
175, 30
               

               
Conread position:
               
324-676
               

               
Cow position:
               
chr10:6473339-6473691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
106, 121
               

               
Conread position:
               
325-657
               

               
Cow position:
               
chr10:38832581-38832940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
164, 122
               

               
Conread position:
               
325-669
               

               
Cow position:
               
chr10:65689191-65689569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
57, 109
               

               
Conread position:
               
327-498
               

               
Cow position:
               
chr10:8729141-8729309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
105, 118
               

               
Conread position:
               
327-666
               

               
Cow position:
               
chr10:55581689-55581332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
103, 118
               

               
Conread position:
               
330-675
               

               
Cow position:
               
chr10:12670885-12671230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
82, 28
               

               
Conread position:
               
331-657
               

               
Cow position:
               
chr10:55225615-55225944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
101, 33
               

               
Conread position:
               
337-675
               

               
Cow position:
               
chr10:52567536-52567183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
95, 116
               

               
Conread position:
               
351-674
               

               
Cow position:
               
chr10:39455132-39455444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
75, 66
               

               
Conread position:
               
399-668
               

               
Cow position:
               
chr10:17631446-17631714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
35, 57
               

               
Conread position:
               
510-675
               

               
Cow position:
               
chr10:42501869-42501703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
61, 140
               

               
Conread position:
               
511-670
               

               
Cow position:
               
chr10:24863945-24863770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
302-659
               

               
Cow position:
               
chr11:74172524-74172876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
198, 59
               

               
Conread position:
               
308-674
               

               
Cow position:
               
chr11:54186088-54186451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
196, 124
               

               
Conread position:
               
309-668
               

               
Cow position:
               
chr11:6373494-6373874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
79, 235
               

               
Conread position:
               
310-666
               

               
Cow position:
               
chr11:63919144-63918775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
122, 158
               

               
Conread position:
               
312-489
               

               
Cow position:
               
chr11:72409205-72409029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
139, 121
               

               
Conread position:
               
312-498
               

               
Cow position:
               
chr11:50871435-50871252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
112, 49
               

               
Conread position:
               
312-637
               

               
Cow position:
               
chr11:29328354-29328005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
139, 121
               

               
Conread position:
               
312-662
               

               
Cow position:
               
chr11:36115114-36114770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
120, 57
               

               
Conread position:
               
312-662
               

               
Cow position:
               
chr11:76497046-76496667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
120, 80
               

               
Conread position:
               
312-666
               

               
Cow position:
               
chr11:14343375-14343734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
118, 29
               

               
Conread position:
               
312-673
               

               
Cow position:
               
chr11:29655535-29655920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
121, 77
               

               
Conread position:
               
313-489
               

               
Cow position:
               
chr11:55487538-55487712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
119, 11
               

               
Conread position:
               
315-642
               

               
Cow position:
               
chr11:23909193-23909544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
117, 76
               

               
Conread position:
               
315-673
               

               
Cow position:
               
chr11:78361814-78361452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
69, 28
               

               
Conread position:
               
321-650
               

               
Cow position:
               
chr11:75885351-75885691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
64, 7
               

               
Conread position:
               
324-449
               

               
Cow position:
               
chr11:53585305-53585433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
324-488
               

               
Cow position:
               
chr11:56296625-56296788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
108, 131
               

               
Conread position:
               
324-489
               

               
Cow position:
               
chr11:20428079-20428247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
324-489
               

               
Cow position:
               
chr11:74849246-74849405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
324-498
               

               
Cow position:
               
chr11:9995273-9995444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
46, 27
               

               
Conread position:
               
324-498
               

               
Cow position:
               
chr11:62201995-62201822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
60, 47
               

               
Conread position:
               
324-577
               

               
Cow position:
               
chr11:50876883-50877152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
108, 27
               

               
Conread position:
               
324-614
               

               
Cow position:
               
chr11:17150888-17150589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
108, 124
               

               
Conread position:
               
324-630
               

               
Cow position:
               
chr11:62873042-62872728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
20, 120
               

               
Conread position:
               
324-639
               

               
Cow position:
               
chr11:66307926-66307611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
109, 121
               

               
Conread position:
               
324-649
               

               
Cow position:
               
chr11:26656282-26656630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
60, 47
               

               
Conread position:
               
324-650
               

               
Cow position:
               
chr11:15290624-15290962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
127, 94
               

               
Conread position:
               
324-650
               

               
Cow position:
               
chr11:44004035-44004376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
109, 29
               

               
Conread position:
               
324-666
               

               
Cow position:
               
chr11:72982541-72982915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
106, 126
               

               
Conread position:
               
324-674
               

               
Cow position:
               
chr11:8112185-8111811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
24, 122
               

               
Conread position:
               
324-675
               

               
Cow position:
               
chr11:55207034-55206645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
17, 122
               

               
Conread position:
               
324-675
               

               
Cow position:
               
chr11:75013218-75013563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
167, 90
               

               
Conread position:
               
324-676
               

               
Cow position:
               
chr11:54364687-54364332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
20, 131
               

               
Conread position:
               
326-562
               

               
Cow position:
               
chr11:27805934-27805683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
106, 10
               

               
Conread position:
               
326-676
               

               
Cow position:
               
chr11:42540511-42540858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
235, 66
               

               
Conread position:
               
327-637
               

               
Cow position:
               
chr11:39473804-39474114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
152, 76
               

               
Conread position:
               
334-558
               

               
Cow position:
               
chr11:56031113-56031334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
98, 111
               

               
Conread position:
               
335-489
               

               
Cow position:
               
chr11:58418321-58418168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
48, 36
               

               
Conread position:
               
339-675
               

               
Cow position:
               
chr11:54777382-54777716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
124, 51
               

               
Conread position:
               
344-670
               

               
Cow position:
               
chr11:35222500-35222851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
68, 46
               

               
Conread position:
               
374-649
               

               
Cow position:
               
chr11:34657658-34657941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
114, 55
               

               
Conread position:
               
387-650
               

               
Cow position:
               
chr11:17115795-17116052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
13, 39
               

               
Conread position:
               
396-670
               

               
Cow position:
               
chr11:6567985-6567699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
36, 58
               

               
Conread position:
               
399-666
               

               
Cow position:
               
chr11:16418810-16418529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
52, 31
               

               
Conread position:
               
461-675
               

               
Cow position:
               
chr11:35703723-35703490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
312-674
               

               
Cow position:
               
chr12:8589828-8590200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
126, 103
               

               
Conread position:
               
313-493
               

               
Cow position:
               
chr12:28841680-28841854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
315-649
               

               
Cow position:
               
chr12:30857440-30857096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
136, 51
               

               
Conread position:
               
315-660
               

               
Cow position:
               
chr12:29067174-29067522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
115, 29
               

               
Conread position:
               
323-488
               

               
Cow position:
               
chr12:38026053-38025892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
323-557
               

               
Cow position:
               
chr12:48452490-48452724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
108, 151
               

               
Conread position:
               
324-489
               

               
Cow position:
               
chr12:7170095-7169933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
324-489
               

               
Cow position:
               
chr12:9252794-9252958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
58, 41
               

               
Conread position:
               
324-649
               

               
Cow position:
               
chr12:14736397-14736724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
95, 47
               

               
Conread position:
               
324-666
               

               
Cow position:
               
chr12:14812516-14812853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
324, 24
               

               
Conread position:
               
324-666
               

               
Cow position:
               
chr12:37797673-37798034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
9, 92
               

               
Conread position:
               
324-669
               

               
Cow position:
               
chr12:8168506-8168859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
106, 60
               

               
Conread position:
               
324-673
               

               
Cow position:
               
chr12:18003184-18002807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
50, 41
               

               
Conread position:
               
324-674
               

               
Cow position:
               
chr12:25531771-25532152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
106, 68
               

               
Conread position:
               
324-675
               

               
Cow position:
               
chr12:40435455-40435095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
108, 129
               

               
Conread position:
               
324-675
               

               
Cow position:
               
chr12:40648089-40648431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
176, 55
               

               
Conread position:
               
325-670
               

               
Cow position:
               
chr12:20463478-20463110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
164, 49
               

               
Conread position:
               
326-600
               

               
Cow position:
               
chr12:20008243-20007973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
102, 88
               

               
Conread position:
               
327-569
               

               
Cow position:
               
chr12:20213957-20214199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
102, 65
               

               
Conread position:
               
327-674
               

               
Cow position:
               
chr12:39799569-39799196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
88, 30
               

               
Conread position:
               
334-664
               

               
Cow position:
               
chr12:37444244-37444581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
143, 99
               

               
Conread position:
               
334-675
               

               
Cow position:
               
chr12:8874616-8874263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
98, 118
               

               
Conread position:
               
334-675
               

               
Cow position:
               
chr12:15472861-15473217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
164, 74
               

               
Conread position:
               
345-670
               

               
Cow position:
               
chr12:12311418-12311070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
38, 26
               

               
Conread position:
               
346-545
               

               
Cow position:
               
chr12:42194184-42194385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
98, 87
               

               
Conread position:
               
374-675
               

               
Cow position:
               
chr12:17476477-17476769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
139, 66
               

               
Conread position:
               
431-674
               

               
Cow position:
               
chr12:33806854-33806598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
30, 161
               

               
Conread position:
               
308-621
               

               
Cow position:
               
chr13:5656652-5656337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
47, 41
               

               
Conread position:
               
312-488
               

               
Cow position:
               
chr13:22701742-22701917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
36, 43
               

               
Conread position:
               
312-488
               

               
Cow position:
               
chr13:30484787-30484615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
120, 10
               

               
Conread position:
               
312-530
               

               
Cow position:
               
chr13:16551338-16551129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
312-592
               

               
Cow position:
               
chr13:5430602-5430311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
120, 124
               

               
Conread position:
               
312-657
               

               
Cow position:
               
chr13:52986052-52985686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
77, 56
               

               
Conread position:
               
315-683
               

               
Cow position:
               
chr13:24109326-24108952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
109, 96
               

               
Conread position:
               
316-676
               

               
Cow position:
               
chr13:11170850-11170479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
5, 103
               

               
Conread position:
               
324-491
               

               
Cow position:
               
chr13:12912276-12912112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
104, 129
               

               
Conread position:
               
324-565
               

               
Cow position:
               
chr13:50790352-50790597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
108, 131
               

               
Conread position:
               
324-627
               

               
Cow position:
               
chr13:21388995-21388699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
106, 93
               

               
Conread position:
               
324-628
               

               
Cow position:
               
chr13:27737896-27738208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
108, 131
               

               
Conread position:
               
324-638
               

               
Cow position:
               
chr13:46221813-46222139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
70, 61
               

               
Conread position:
               
324-646
               

               
Cow position:
               
chr13:12570411-12570080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
108, 41
               

               
Conread position:
               
324-650
               

               
Cow position:
               
chr13:22114978-22114652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
146, 24
               

               
Conread position:
               
324-666
               

               
Cow position:
               
chr13:13532817-13533192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
324-669
               

               
Cow position:
               
chr13:24153908-24153556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
134, 24
               

               
Conread position:
               
324-670
               

               
Cow position:
               
chr13:46134420-46134053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
67, 20
               

               
Conread position:
               
324-675
               

               
Cow position:
               
chr13:16988739-16988366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
108, 89
               

               
Conread position:
               
324-675
               

               
Cow position:
               
chr13:54071664-54071318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
108, 31
               

               
Conread position:
               
325-515
               

               
Cow position:
               
chr13:48484358-48484549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
173, 93
               

               
Conread position:
               
326-642
               

               
Cow position:
               
chr13:2980586-2980922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
45, 122
               

               
Conread position:
               
326-670
               

               
Cow position:
               
chr13:35008742-35009084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
106, 119
               

               
Conread position:
               
326-670
               

               
Cow position:
               
chr13:41564929-41564557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
103, 74
               

               
Conread position:
               
327-676
               

               
Cow position:
               
chr13:15402278-15402635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
94, 6
               

               
Conread position:
               
331-633
               

               
Cow position:
               
chr13:21856089-21856411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
101, 34
               

               
Conread position:
               
331-669
               

               
Cow position:
               
chr13:42854777-42855114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
100, 112
               

               
Conread position:
               
334-675
               

               
Cow position:
               
chr13:41654500-41654838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
31, 113
               

               
Conread position:
               
338-569
               

               
Cow position:
               
chr13:36403878-36404112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
90, 128
               

               
Conread position:
               
345-660
               

               
Cow position:
               
chr13:48787174-48787518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
87, 109
               

               
Conread position:
               
345-670
               

               
Cow position:
               
chr13:42726494-42726833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
85, 116
               

               
Conread position:
               
307-678
               

               
Cow position:
               
chr14:21047877-21047512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
201, 127
               

               
Conread position:
               
312-488
               

               
Cow position:
               
chr14:25168252-25168085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
312-559
               

               
Cow position:
               
chr14:43008827-43008578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
40, 137
               

               
Conread position:
               
312-679
               

               
Cow position:
               
chr14:43261994-43262376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
65, 12
               

               
Conread position:
               
315-675
               

               
Cow position:
               
chr14:33184083-33184475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 140
               

               
Conread position:
               
324-554
               

               
Cow position:
               
chr14:39627384-39627616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
105, 119
               

               
Conread position:
               
324-633
               

               
Cow position:
               
chr14:39099388-39099068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
127, 109
               

               
Conread position:
               
324-651
               

               
Cow position:
               
chr14:12925600-12925271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
107, 82
               

               
Conread position:
               
324-666
               

               
Cow position:
               
chr14:41095983-41095634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
47, 20
               

               
Conread position:
               
325-677
               

               
Cow position:
               
chr14:42467332-42466966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
108, 123
               

               
Conread position:
               
336-675
               

               
Cow position:
               
chr14:39399885-39399537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
96, 30
               

               
Conread position:
               
519-669
               

               
Cow position:
               
chr14:20351249-20351095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
44, 53
               

               
Conread position:
               
519-670
               

               
Cow position:
               
chr14:13359105-13359253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
44, 53
               

               
Conread position:
               
520-675
               

               
Cow position:
               
chr14:39779805-39779959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
125, 12
               

               
Conread position:
               
285-668
               

               
Cow position:
               
chr15:16425425-16425042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
147, 17
               

               
Conread position:
               
303-493
               

               
Cow position:
               
chr15:13791562-13791751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
70, 95
               

               
Conread position:
               
306-630
               

               
Cow position:
               
chr15:51246238-51245903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
16, 202
               

               
Conread position:
               
312-639
               

               
Cow position:
               
chr15:26148663-26148998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
120, 143
               

               
Conread position:
               
312-646
               

               
Cow position:
               
chr15:30050888-30051244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
139, 46
               

               
Conread position:
               
312-670
               

               
Cow position:
               
chr15:5883748-5884138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
118, 40
               

               
Conread position:
               
312-671
               

               
Cow position:
               
chr15:14547916-14548284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
152, 123
               

               
Conread position:
               
313-675
               

               
Cow position:
               
chr15:33196535-33196156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
119, 59
               

               
Conread position:
               
323-675
               

               
Cow position:
               
chr15:41805834-41806199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
110, 28
               

               
Conread position:
               
324-569
               

               
Cow position:
               
chr15:16081216-16080957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
15, 122
               

               
Conread position:
               
324-579
               

               
Cow position:
               
chr15:25064014-25063749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
108, 42
               

               
Conread position:
               
324-649
               

               
Cow position:
               
chr15:50206902-50206565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
26, 42
               

               
Conread position:
               
324-664
               

               
Cow position:
               
chr15:39360493-39360852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
53, 41
               

               
Conread position:
               
324-666
               

               
Cow position:
               
chr15:49073801-49074147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
104, 130
               

               
Conread position:
               
324-670
               

               
Cow position:
               
chr15:24601524-24601157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
108, 51
               

               
Conread position:
               
324-670
               

               
Cow position:
               
chr15:49067551-49067912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
108, 121
               

               
Conread position:
               
324-672
               

               
Cow position:
               
chr15:29448874-29448511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
41, 91
               

               
Conread position:
               
324-674
               

               
Cow position:
               
chr15:30790689-30790328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
134, 102
               

               
Conread position:
               
324-679
               

               
Cow position:
               
chr15:10784755-10785132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
108, 33
               

               
Conread position:
               
324-684
               

               
Cow position:
               
chr15:40110642-40111033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
152, 108
               

               
Conread position:
               
325-489
               

               
Cow position:
               
chr15:15171179-15171342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
107, 111
               

               
Conread position:
               
326-650
               

               
Cow position:
               
chr15:8272033-8271705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
165, 64
               

               
Conread position:
               
330-666
               

               
Cow position:
               
chr15:24963491-24963849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
108, 102
               

               
Conread position:
               
334-673
               

               
Cow position:
               
chr15:40203576-40203939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
98, 330
               

               
Conread position:
               
334-675
               

               
Cow position:
               
chr15:9973942-9974298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
149, 99
               

               
Conread position:
               
335-621
               

               
Cow position:
               
chr15:17031355-17031631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
96, 36
               

               
Conread position:
               
336-639
               

               
Cow position:
               
chr15:35159275-35159588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
96, 112
               

               
Conread position:
               
336-673
               

               
Cow position:
               
chr15:10047905-10047563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
37, 28
               

               
Conread position:
               
337-593
               

               
Cow position:
               
chr15:40837591-40837850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
114, 28
               

               
Conread position:
               
374-668
               

               
Cow position:
               
chr15:8360897-8361212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
59, 19
               

               
Conread position:
               
306-628
               

               
Cow position:
               
chr16:45973219-45973546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
175, 75
               

               
Conread position:
               
310-675
               

               
Cow position:
               
chr16:19485701-19485345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
179, 85
               

               
Conread position:
               
312-496
               

               
Cow position:
               
chr16:15212943-15212759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
106, 158
               

               
Conread position:
               
312-637
               

               
Cow position:
               
chr16:3089943-3089605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
120, 106
               

               
Conread position:
               
312-650
               

               
Cow position:
               
chr16:25067197-25067549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
59, 143
               

               
Conread position:
               
312-664
               

               
Cow position:
               
chr16:3308678-3308317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
120, 127
               

               
Conread position:
               
315-675
               

               
Cow position:
               
chr16:29322735-29322361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
117, 133
               

               
Conread position:
               
324-488
               

               
Cow position:
               
chr16:41531247-41531410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
108, 126
               

               
Conread position:
               
324-489
               

               
Cow position:
               
chr16:2508883-2508719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
108, 130
               

               
Conread position:
               
324-491
               

               
Cow position:
               
chr16:46616998-46617163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
106, 19
               

               
Conread position:
               
324-515
               

               
Cow position:
               
chr16:15742742-15742554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
104, 131
               

               
Conread position:
               
324-623
               

               
Cow position:
               
chr16:46106689-46106388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
90, 129
               

               
Conread position:
               
324-629
               

               
Cow position:
               
chr16:14089021-14088715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
107, 19
               

               
Conread position:
               
324-642
               

               
Cow position:
               
chr16:12546587-12546254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
15, 266
               

               
Conread position:
               
324-646
               

               
Cow position:
               
chr16:19350501-19350170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
108, 31
               

               
Conread position:
               
324-662
               

               
Cow position:
               
chr16:42165625-42165283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
108, 121
               

               
Conread position:
               
324-667
               

               
Cow position:
               
chr16:24759563-24759914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
108, 130
               

               
Conread position:
               
324-670
               

               
Cow position:
               
chr16:23732469-23732104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
157, 94
               

               
Conread position:
               
324-670
               

               
Cow position:
               
chr16:30836174-30835805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
10, 111
               

               
Conread position:
               
324-670
               

               
Cow position:
               
chr16:46497420-46497065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
167, 108
               

               
Conread position:
               
324-670
               

               
Cow position:
               
chr16:52243127-52242785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
108, 121
               

               
Conread position:
               
324-670
               

               
Cow position:
               
chr16:52403506-52403873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
109, 241
               

               
Conread position:
               
324-674
               

               
Cow position:
               
chr16:20825932-20826285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
106, 153
               

               
Conread position:
               
324-675
               

               
Cow position:
               
chr16:46063305-46062927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
98, 48
               

               
Conread position:
               
324-675
               

               
Cow position:
               
chr16:46099837-46099465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
167, 128
               

               
Conread position:
               
324-679
               

               
Cow position:
               
chr16:17874093-17873711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
134, 224
               

               
Conread position:
               
325-498
               

               
Cow position:
               
chr16:42133275-42133445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
107, 128
               

               
Conread position:
               
329-542
               

               
Cow position:
               
chr16:52684273-52684487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
103, 120
               

               
Conread position:
               
330-675
               

               
Cow position:
               
chr16:10597753-10597385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
100, 113
               

               
Conread position:
               
336-646
               

               
Cow position:
               
chr16:42636931-42636602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
113, 96
               

               
Conread position:
               
338-639
               

               
Cow position:
               
chr16:40480680-40481005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
7, 104
               

               
Conread position:
               
365-658
               

               
Cow position:
               
chr16:30570766-30570479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
66, 8
               

               
Conread position:
               
377-666
               

               
Cow position:
               
chr16:38550180-38549883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
54, 74
               

               
Conread position:
               
510-674
               

               
Cow position:
               
chr16:15945692-15945518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
57, 141
               

               
Conread position:
               
510-681
               

               
Cow position:
               
chr16:14042118-14042287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
59, 33
               

               
Conread position:
               
290-489
               

               
Cow position:
               
chr17:32454769-32454967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
86, 79
               

               
Conread position:
               
309-488
               

               
Cow position:
               
chr17:28893345-28893169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
25, 83
               

               
Conread position:
               
310-489
               

               
Cow position:
               
chr17:26510062-26509891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
171, 82
               

               
Conread position:
               
312-428
               

               
Cow position:
               
chr17:27375323-27375207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
312-642
               

               
Cow position:
               
chr17:26476925-26477269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
13, 160
               

               
Conread position:
               
312-642
               

               
Cow position:
               
chr17:32292966-32292622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
63, 130
               

               
Conread position:
               
313-639
               

               
Cow position:
               
chr17:20696014-20696350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
119, 32
               

               
Conread position:
               
315-676
               

               
Cow position:
               
chr17:23120656-23121024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
208, 50
               

               
Conread position:
               
315-678
               

               
Cow position:
               
chr17:26248083-26248467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
100, 18
               

               
Conread position:
               
324-480
               

               
Cow position:
               
chr17:16320973-16321128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
106, 130
               

               
Conread position:
               
324-488
               

               
Cow position:
               
chr17:7704330-7704167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
324-488
               

               
Cow position:
               
chr17:38949044-38949207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
108, 130
               

               
Conread position:
               
324-511
               

               
Cow position:
               
chr17:18730450-18730267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
102, 80
               

               
Conread position:
               
324-561
               

               
Cow position:
               
chr17:26290342-26290593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
30, 122
               

               
Conread position:
               
324-621
               

               
Cow position:
               
chr17:27788011-27788323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
108, 19
               

               
Conread position:
               
324-669
               

               
Cow position:
               
chr17:30143150-30142767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
91, 359
               

               
Conread position:
               
324-670
               

               
Cow position:
               
chr17:26813561-26813216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
106, 121
               

               
Conread position:
               
324-670
               

               
Cow position:
               
chr17:32306627-32306254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
108, 121
               

               
Conread position:
               
324-675
               

               
Cow position:
               
chr17:29510226-29509865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
6, 69
               

               
Conread position:
               
325-675
               

               
Cow position:
               
chr17:8125132-8124786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
126, 98
               

               
Conread position:
               
326-670
               

               
Cow position:
               
chr17:42283801-42283441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
100, 35
               

               
Conread position:
               
330-607
               

               
Cow position:
               
chr17:28467583-28467863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
100, 61
               

               
Conread position:
               
338-638
               

               
Cow position:
               
chr17:26242593-26242290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
91, 114
               

               
Conread position:
               
339-642
               

               
Cow position:
               
chr17:30065427-30065737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
150, 58
               

               
Conread position:
               
344-587
               

               
Cow position:
               
chr17:23491103-23490870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
85, 34
               

               
Conread position:
               
354-670
               

               
Cow position:
               
chr17:29830163-29830509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
69, 95
               

               
Conread position:
               
366-676
               

               
Cow position:
               
chr17:29561369-29561700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
66, 31
               

               
Conread position:
               
377-638
               

               
Cow position:
               
chr17:33488727-33488448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
56, 15
               

               
Conread position:
               
378-670
               

               
Cow position:
               
chr17:11747175-11746871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
7, 47
               

               
Conread position:
               
304-569
               

               
Cow position:
               
chr18:40220703-40220974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
126, 41
               

               
Conread position:
               
304-614
               

               
Cow position:
               
chr18:21213556-21213889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
129, 0
               

               
Conread position:
               
312-675
               

               
Cow position:
               
chr18:51034819-51035211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
120, 52
               

               
Conread position:
               
315-618
               

               
Cow position:
               
chr18:46054048-46054348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
95, 76
               

               
Conread position:
               
324-489
               

               
Cow position:
               
chr18:43144637-43144472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
94, 122
               

               
Conread position:
               
324-513
               

               
Cow position:
               
chr18:6741729-6741543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
108, 121
               

               
Conread position:
               
324-569
               

               
Cow position:
               
chr18:23330903-23331156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
157, 54
               

               
Conread position:
               
324-621
               

               
Cow position:
               
chr18:49941256-49941561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
93, 44
               

               
Conread position:
               
324-658
               

               
Cow position:
               
chr18:16311880-16312211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
108, 10
               

               
Conread position:
               
324-673
               

               
Cow position:
               
chr18:21413901-21413533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
19, 90
               

               
Conread position:
               
324-675
               

               
Cow position:
               
chr18:24711953-24711580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 121
               

               
Conread position:
               
325-532
               

               
Cow position:
               
chr18:16180142-16180349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
159, 82
               

               
Conread position:
               
325-673
               

               
Cow position:
               
chr18:23125720-23125360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
107, 93
               

               
Conread position:
               
330-679
               

               
Cow position:
               
chr18:31983743-31984117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
102, 115
               

               
Conread position:
               
334-666
               

               
Cow position:
               
chr18:18056551-18056189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
335-666
               

               
Cow position:
               
chr18:8103246-8102901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
116, 97
               

               
Conread position:
               
338-678
               

               
Cow position:
               
chr18:36378951-36378583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
340-628
               

               
Cow position:
               
chr18:49656808-49656497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
344-636
               

               
Cow position:
               
chr18:1198747-1199037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
137, 82
               

               
Conread position:
               
344-675
               

               
Cow position:
               
chr18:23044570-23044893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
107, 131
               

               
Conread position:
               
345-670
               

               
Cow position:
               
chr18:16195113-16195458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
106, 88
               

               
Conread position:
               
366-674
               

               
Cow position:
               
chr18:14508589-14508261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
19, 68
               

               
Conread position:
               
374-666
               

               
Cow position:
               
chr18:45833882-45833578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
10, 17
               

               
Conread position:
               
377-677
               

               
Cow position:
               
chr18:6374690-6375015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
56, 42
               

               
Conread position:
               
451-662
               

               
Cow position:
               
chr18:36316533-36316743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
112, 46
               

               
Conread position:
               
506-670
               

               
Cow position:
               
chr18:32316499-32316670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
63, 132
               

               
Conread position:
               
509-670
               

               
Cow position:
               
chr18:11314641-11314470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
54, 142
               

               
Conread position:
               
511-675
               

               
Cow position:
               
chr18:23069240-23069405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
25, 61
               

               
Conread position:
               
512-675
               

               
Cow position:
               
chr18:44113426-44113598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
55, 138
               

               
Conread position:
               
285-651
               

               
Cow position:
               
chr19:44715993-44715601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
6, 162
               

               
Conread position:
               
285-673
               

               
Cow position:
               
chr19:43414657-43414243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
112, 161
               

               
Conread position:
               
304-656
               

               
Cow position:
               
chr19:14271861-14272214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
128, 114
               

               
Conread position:
               
304-665
               

               
Cow position:
               
chr19:16186616-16186244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
151, 104
               

               
Conread position:
               
304-666
               

               
Cow position:
               
chr19:29134833-29135214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
128, 151
               

               
Conread position:
               
312-579
               

               
Cow position:
               
chr19:48699374-48699636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
72, 7
               

               
Conread position:
               
312-675
               

               
Cow position:
               
chr19:31609228-31609598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
66, 53
               

               
Conread position:
               
324-610
               

               
Cow position:
               
chr19:25520355-25520642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
29, 122
               

               
Conread position:
               
324-635
               

               
Cow position:
               
chr19:46899771-46900092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
108, 136
               

               
Conread position:
               
324-650
               

               
Cow position:
               
chr19:8235928-8235588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
107, 129
               

               
Conread position:
               
324-666
               

               
Cow position:
               
chr19:46841006-46840660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
127, 107
               

               
Conread position:
               
324-670
               

               
Cow position:
               
chr19:49518193-49517844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
54, 38
               

               
Conread position:
               
324-672
               

               
Cow position:
               
chr19:24683430-24683061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
120, 106
               

               
Conread position:
               
324-673
               

               
Cow position:
               
chr19:29089952-29090326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
108, 10
               

               
Conread position:
               
324-675
               

               
Cow position:
               
chr19:4380018-4380379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
120, 68
               

               
Conread position:
               
324-675
               

               
Cow position:
               
chr19:14225606-14225981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
60, 45
               

               
Conread position:
               
324-675
               

               
Cow position:
               
chr19:48535399-48535752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
22, 68
               

               
Conread position:
               
326-650
               

               
Cow position:
               
chr19:7590294-7590615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
106, 119
               

               
Conread position:
               
334-658
               

               
Cow position:
               
chr19:40029285-40029610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
98, 56
               

               
Conread position:
               
335-600
               

               
Cow position:
               
chr19:43896884-43896629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
53, 97
               

               
Conread position:
               
341-623
               

               
Cow position:
               
chr19:4995535-4995231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
150, 88
               

               
Conread position:
               
351-675
               

               
Cow position:
               
chr19:23704236-23703894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
75, 14
               

               
Conread position:
               
356-628
               

               
Cow position:
               
chr19:41450449-41450155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
416-675
               

               
Cow position:
               
chr19:30207201-30207476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
74, 16
               

               
Conread position:
               
510-670
               

               
Cow position:
               
chr19:38607184-38607356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
513-674
               

               
Cow position:
               
chr19:28796584-28796415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
324-665
               

               
Cow position:
               
chr20:4853678-4853308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
169, 109
               

               
Conread position:
               
324-668
               

               
Cow position:
               
chr20:23332126-23331756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
129, 102
               

               
Conread position:
               
324-669
               

               
Cow position:
               
chr20:3798856-3798490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
160, 37
               

               
Conread position:
               
324-677
               

               
Cow position:
               
chr20:150289-150660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
70, 53
               

               
Conread position:
               
325-666
               

               
Cow position:
               
chr20:13063894-13064244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
53, 49
               

               
Conread position:
               
326-568
               

               
Cow position:
               
chr20:701968-701711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
22, 27
               

               
Conread position:
               
327-597
               

               
Cow position:
               
chr20:34095648-34095924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
105, 125
               

               
Conread position:
               
335-656
               

               
Cow position:
               
chr20:13710802-13710453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
304-489
               

               
Cow position:
               
chr21:40178184-40178367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
126, 75
               

               
Conread position:
               
304-498
               

               
Cow position:
               
chr21:876212-876405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
35, 142
               

               
Conread position:
               
310-488
               

               
Cow position:
               
chr21:39081246-39081066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
42, 60
               

               
Conread position:
               
324-496
               

               
Cow position:
               
chr21:21033429-21033598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
136, 8
               

               
Conread position:
               
324-564
               

               
Cow position:
               
chr21:27355266-27355515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
93, 153
               

               
Conread position:
               
324-650
               

               
Cow position:
               
chr21:26254869-26255215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
108, 129
               

               
Conread position:
               
324-659
               

               
Cow position:
               
chr21:35355762-35355424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
108, 41
               

               
Conread position:
               
324-670
               

               
Cow position:
               
chr21:3605169-3605513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
77, 110
               

               
Conread position:
               
324-670
               

               
Cow position:
               
chr21:48314799-48314446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
65, 54
               

               
Conread position:
               
324-675
               

               
Cow position:
               
chr21:29634410-29634779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
140, 109
               

               
Conread position:
               
324-683
               

               
Cow position:
               
chr21:8219669-8220055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
110, 100
               

               
Conread position:
               
325-650
               

               
Cow position:
               
chr21:37646748-37646410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
163, 9
               

               
Conread position:
               
327-489
               

               
Cow position:
               
chr21:34511424-34511266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
105, 109
               

               
Conread position:
               
327-675
               

               
Cow position:
               
chr21:4861276-4860917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
103, 140
               

               
Conread position:
               
340-565
               

               
Cow position:
               
chr21:9328923-9328695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
92, 31
               

               
Conread position:
               
372-676
               

               
Cow position:
               
chr21:14382371-14382070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
59, 19
               

               
Conread position:
               
518-674
               

               
Cow position:
               
chr21:36680941-36681087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
522-677
               

               
Cow position:
               
chr21:21405374-21405220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
38, 50
               

               
Conread position:
               
569-673
               

               
Cow position:
               
chr21:36720111-36720006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
52, 79
               

               
Conread position:
               
310-671
               

               
Cow position:
               
chr22:28315164-28315547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
108, 59
               

               
Conread position:
               
312-611
               

               
Cow position:
               
chr22:7299630-7299950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
165, 96
               

               
Conread position:
               
312-655
               

               
Cow position:
               
chr22:44578193-44578537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
120, 133
               

               
Conread position:
               
324-442
               

               
Cow position:
               
chr22:41659117-41658998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
324-484
               

               
Cow position:
               
chr22:26963038-26963197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
127, 114
               

               
Conread position:
               
324-489
               

               
Cow position:
               
chr22:10673878-10674041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
108, 14
               

               
Conread position:
               
324-577
               

               
Cow position:
               
chr22:25449944-25449673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
324-658
               

               
Cow position:
               
chr22:7805624-7805974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
49, 40
               

               
Conread position:
               
324-664
               

               
Cow position:
               
chr22:13873946-13874308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
107, 130
               

               
Conread position:
               
324-670
               

               
Cow position:
               
chr22:41838567-41838915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
21, 35
               

               
Conread position:
               
324-674
               

               
Cow position:
               
chr22:43354391-43354022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
5, 47
               

               
Conread position:
               
324-675
               

               
Cow position:
               
chr22:10174770-10174397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
108, 131
               

               
Conread position:
               
324-676
               

               
Cow position:
               
chr22:29893093-29893484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
106, 123
               

               
Conread position:
               
324-683
               

               
Cow position:
               
chr22:8966850-8966478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
108, 12
               

               
Conread position:
               
326-673
               

               
Cow position:
               
chr22:17213463-17213096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
52, 45
               

               
Conread position:
               
330-498
               

               
Cow position:
               
chr22:7946868-7946700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
60, 104
               

               
Conread position:
               
335-675
               

               
Cow position:
               
chr22:30257747-30258104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
81, 68
               

               
Conread position:
               
337-580
               

               
Cow position:
               
chr22:11990554-11990800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
95, 35
               

               
Conread position:
               
342-675
               

               
Cow position:
               
chr22:8187191-8187524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
17, 12
               

               
Conread position:
               
360-664
               

               
Cow position:
               
chr22:45877985-45878289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
73, 93
               

               
Conread position:
               
377-673
               

               
Cow position:
               
chr22:14061414-14061096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
49, 81
               

               
Conread position:
               
310-670
               

               
Cow position:
               
chr23:36159296-36159675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
29, 55
               

               
Conread position:
               
312-513
               

               
Cow position:
               
chr23:1323578-1323781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
313-489
               

               
Cow position:
               
chr23:27181241-27181065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
31, 121
               

               
Conread position:
               
315-489
               

               
Cow position:
               
chr23:25773005-25773178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
136, 124
               

               
Conread position:
               
315-498
               

               
Cow position:
               
chr23:5256081-5256268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
117, 181
               

               
Conread position:
               
323-489
               

               
Cow position:
               
chr23:35276185-35276350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
109, 129
               

               
Conread position:
               
324-512
               

               
Cow position:
               
chr23:11559259-11559073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
54, 40
               

               
Conread position:
               
324-558
               

               
Cow position:
               
chr23:281513-281758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
25, 137
               

               
Conread position:
               
324-634
               

               
Cow position:
               
chr23:22551566-22551889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
108, 19
               

               
Conread position:
               
324-666
               

               
Cow position:
               
chr23:11756764-11757119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
105, 18
               

               
Conread position:
               
324-675
               

               
Cow position:
               
chr23:37162340-37161991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
152, 102
               

               
Conread position:
               
325-637
               

               
Cow position:
               
chr23:32416780-32416464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
107, 7
               

               
Conread position:
               
326-488
               

               
Cow position:
               
chr23:11399856-11400017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
98, 129
               

               
Conread position:
               
345-568
               

               
Cow position:
               
chr23:17290650-17290418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
87, 109
               

               
Conread position:
               
355-668
               

               
Cow position:
               
chr23:21766477-21766144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
23, 10
               

               
Conread position:
               
374-670
               

               
Cow position:
               
chr23:38097770-38097468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
59, 81
               

               
Conread position:
               
377-675
               

               
Cow position:
               
chr23:29822199-29822503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
122, 56
               

               
Conread position:
               
312-448
               

               
Cow position:
               
chr24:16143593-16143732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
312-666
               

               
Cow position:
               
chr24:44552639-44553024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
177, 60
               

               
Conread position:
               
324-620
               

               
Cow position:
               
chr24:44363324-44363020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
110, 256
               

               
Conread position:
               
324-648
               

               
Cow position:
               
chr24:23161578-23161906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
108, 101
               

               
Conread position:
               
324-659
               

               
Cow position:
               
chr24:31033658-31033996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
106, 62
               

               
Conread position:
               
324-670
               

               
Cow position:
               
chr24:36223166-36223500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
127, 67
               

               
Conread position:
               
324-672
               

               
Cow position:
               
chr24:25978118-25977759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
54, 122
               

               
Conread position:
               
324-678
               

               
Cow position:
               
chr24:26776623-26776251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
41, 14
               

               
Conread position:
               
330-675
               

               
Cow position:
               
chr24:32227223-32227577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
99, 13
               

               
Conread position:
               
340-675
               

               
Cow position:
               
chr24:26651240-26650882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
92, 174
               

               
Conread position:
               
377-671
               

               
Cow position:
               
chr24:16997701-16998000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
38, 16
               

               
Conread position:
               
304-489
               

               
Cow position:
               
chr25:16039534-16039350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
35, 142
               

               
Conread position:
               
312-650
               

               
Cow position:
               
chr25:8348222-8347878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
32, 163
               

               
Conread position:
               
312-666
               

               
Cow position:
               
chr25:11480515-11480158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
110, 36
               

               
Conread position:
               
312-670
               

               
Cow position:
               
chr25:36798394-36798013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
120, 133
               

               
Conread position:
               
313-569
               

               
Cow position:
               
chr25:5917367-5917100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
118, 174
               

               
Conread position:
               
315-511
               

               
Cow position:
               
chr25:13215808-13215614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
56, 141
               

               
Conread position:
               
315-621
               

               
Cow position:
               
chr25:19054750-19055072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
178, 117
               

               
Conread position:
               
323-489
               

               
Cow position:
               
chr25:11920552-11920387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
125, 116
               

               
Conread position:
               
324-489
               

               
Cow position:
               
chr25:4188305-4188141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
107, 121
               

               
Conread position:
               
324-511
               

               
Cow position:
               
chr25:18610792-18610970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
324-590
               

               
Cow position:
               
chr25:12449423-12449146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
106, 139
               

               
Conread position:
               
324-638
               

               
Cow position:
               
chr25:10411951-10411619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
108, 51
               

               
Conread position:
               
324-642
               

               
Cow position:
               
chr25:32116849-32116525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
108, 27
               

               
Conread position:
               
324-650
               

               
Cow position:
               
chr25:24653172-24653516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
100, 50
               

               
Conread position:
               
324-675
               

               
Cow position:
               
chr25:5212120-5211759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
116, 31
               

               
Conread position:
               
324-675
               

               
Cow position:
               
chr25:24663247-24662880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
119, 20
               

               
Conread position:
               
335-498
               

               
Cow position:
               
chr25:22277504-22277344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
95, 110
               

               
Conread position:
               
336-569
               

               
Cow position:
               
chr25:8905137-8905379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
8, 20
               

               
Conread position:
               
336-649
               

               
Cow position:
               
chr25:14995220-14994901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
106, 129
               

               
Conread position:
               
351-675
               

               
Cow position:
               
chr25:1583910-1583572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
14, 83
               

               
Conread position:
               
459-675
               

               
Cow position:
               
chr25:13831969-13832206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
13, 109
               

               
Conread position:
               
312-486
               

               
Cow position:
               
chr26:28446123-28446297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
120, 125
               

               
Conread position:
               
312-670
               

               
Cow position:
               
chr26:8437985-8437620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
120, 21
               

               
Conread position:
               
313-628
               

               
Cow position:
               
chr26:7898895-7898574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
120, 78
               

               
Conread position:
               
315-489
               

               
Cow position:
               
chr26:11876000-11876170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
89, 48
               

               
Conread position:
               
324-490
               

               
Cow position:
               
chr26:13343967-13343802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
108, 121
               

               
Conread position:
               
324-511
               

               
Cow position:
               
chr26:20134142-20134328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
38, 131
               

               
Conread position:
               
324-511
               

               
Cow position:
               
chr26:23191810-23191624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
94, 131
               

               
Conread position:
               
324-569
               

               
Cow position:
               
chr26:11963097-11963357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
167, 108
               

               
Conread position:
               
324-670
               

               
Cow position:
               
chr26:26629005-26628633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
94, 110
               

               
Conread position:
               
324-675
               

               
Cow position:
               
chr26:25555561-25555198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
108, 94
               

               
Conread position:
               
324-675
               

               
Cow position:
               
chr26:26019242-26019606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
108, 131
               

               
Conread position:
               
324-678
               

               
Cow position:
               
chr26:13832211-13831829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
108, 128
               

               
Conread position:
               
325-674
               

               
Cow position:
               
chr26:11528789-11529153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
64, 44
               

               
Conread position:
               
327-489
               

               
Cow position:
               
chr26:17538975-17539139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
105, 123
               

               
Conread position:
               
334-673
               

               
Cow position:
               
chr26:10124015-10123646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
98, 84
               

               
Conread position:
               
335-569
               

               
Cow position:
               
chr26:12489938-12490176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
97, 118
               

               
Conread position:
               
336-488
               

               
Cow position:
               
chr26:35162848-35162699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
95, 107
               

               
Conread position:
               
336-669
               

               
Cow position:
               
chr26:32830305-32830658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
27, 32
               

               
Conread position:
               
338-671
               

               
Cow position:
               
chr26:31120984-31120630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
92, 113
               

               
Conread position:
               
399-676
               

               
Cow position:
               
chr26:25802243-25801943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
34, 55
               

               
Conread position:
               
401-671
               

               
Cow position:
               
chr26:8696737-8696460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
31, 43
               

               
Conread position:
               
312-614
               

               
Cow position:
               
chr27:23739310-23738995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
120, 17
               

               
Conread position:
               
312-670
               

               
Cow position:
               
chr27:23793715-23793364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
183, 61
               

               
Conread position:
               
323-651
               

               
Cow position:
               
chr27:9436758-9437113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
30, 132
               

               
Conread position:
               
324-479
               

               
Cow position:
               
chr27:21336323-21336476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
124, 87
               

               
Conread position:
               
324-489
               

               
Cow position:
               
chr27:15199042-15198879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
324-489
               

               
Cow position:
               
chr27:23583322-23583162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
94, 106
               

               
Conread position:
               
324-490
               

               
Cow position:
               
chr27:11634181-11634018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
108, 126
               

               
Conread position:
               
324-665
               

               
Cow position:
               
chr27:29046861-29047206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
127, 94
               

               
Conread position:
               
333-650
               

               
Cow position:
               
chr27:14870249-14870601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
99, 122
               

               
Conread position:
               
348-670
               

               
Cow position:
               
chr27:12761442-12761770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
52, 44
               

               
Conread position:
               
519-678
               

               
Cow position:
               
chr27:15191263-15191426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
5, 54
               

               
Conread position:
               
306-675
               

               
Cow position:
               
chr28:20974279-20973915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
124, 66
               

               
Conread position:
               
312-488
               

               
Cow position:
               
chr28:14925675-14925498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
58, 33
               

               
Conread position:
               
312-675
               

               
Cow position:
               
chr28:676860-676474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
119, 173
               

               
Conread position:
               
315-489
               

               
Cow position:
               
chr28:20374470-20374643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
117, 137
               

               
Conread position:
               
324-555
               

               
Cow position:
               
chr28:4157060-4157297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
105, 132
               

               
Conread position:
               
324-559
               

               
Cow position:
               
chr28:33768997-33769250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
108, 140
               

               
Conread position:
               
324-565
               

               
Cow position:
               
chr28:26341649-26341406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
108, 127
               

               
Conread position:
               
324-664
               

               
Cow position:
               
chr28:9126433-9126069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
20, 110
               

               
Conread position:
               
324-665
               

               
Cow position:
               
chr28:20958856-20958498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
105, 21
               

               
Conread position:
               
324-665
               

               
Cow position:
               
chr28:34573842-34574208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
108, 127
               

               
Conread position:
               
324-666
               

               
Cow position:
               
chr28:29123349-29123000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
20, 117
               

               
Conread position:
               
324-670
               

               
Cow position:
               
chr28:23136681-23136314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
108, 248
               

               
Conread position:
               
324-671
               

               
Cow position:
               
chr28:23020839-23020489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
101, 72
               

               
Conread position:
               
324-675
               

               
Cow position:
               
chr28:4136524-4136165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
109, 319
               

               
Conread position:
               
324-677
               

               
Cow position:
               
chr28:20772480-20772833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
108, 62
               

               
Conread position:
               
330-600
               

               
Cow position:
               
chr28:11857289-11857565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
102, 248
               

               
Conread position:
               
334-670
               

               
Cow position:
               
chr28:20710555-20710893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
70, 57
               

               
Conread position:
               
336-670
               

               
Cow position:
               
chr28:23903986-23904338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
48, 29
               

               
Conread position:
               
341-670
               

               
Cow position:
               
chr28:4186118-4186470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
91, 107
               

               
Conread position:
               
388-671
               

               
Cow position:
               
chr28:2125631-2125352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
107, 64
               

               
Conread position:
               
510-671
               

               
Cow position:
               
chr28:25801224-25801060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
75, 61
               

               
Conread position:
               
518-670
               

               
Cow position:
               
chr28:22612972-22613129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
315-673
               

               
Cow position:
               
chr29:9462963-9462583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
117, 38
               

               
Conread position:
               
323-670
               

               
Cow position:
               
chr29:18104306-18103955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
108, 67
               

               
Conread position:
               
324-489
               

               
Cow position:
               
chr29:19616500-19616339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
107, 57
               

               
Conread position:
               
324-614
               

               
Cow position:
               
chr29:23643040-23642747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
94, 61
               

               
Conread position:
               
324-632
               

               
Cow position:
               
chr29:42474295-42474625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
108, 94
               

               
Conread position:
               
324-637
               

               
Cow position:
               
chr29:39576815-39576489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
106, 146
               

               
Conread position:
               
324-666
               

               
Cow position:
               
chr29:4335870-4336232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
21, 270
               

               
Conread position:
               
326-650
               

               
Cow position:
               
chr29:12955476-12955143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
36, 133
               

               
Conread position:
               
360-670
               

               
Cow position:
               
chr29:39108629-39108306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
10, 55
               

               
Conread position:
               
374-670
               

               
Cow position:
               
chr29:29622523-29622840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
59, 80
               

               
Conread position:
               
405-675
               

               
Cow position:
               
chr29:9832898-9833190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
25, 45
               

               
Conread position:
               
476-666
               

               
Cow position:
               
chr29:20588423-20588229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
13, 22
               

               
Conread position:
               
510-673
               

               
Cow position:
               
chr29:32196176-32196347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
60, 33
               

               
Conread position:
               
51-660
               

               
Cow position:
               
chr7:2999671-3000286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
626
               

               
Alignm identity:
               
470
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 48
               

               
Conread position:
               
301-610
               

               
Cow position:
               
chr7:8082306-8082620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
74, 100
               

               
Conread position:
               
302-639
               

               
Cow position:
               
chr7:6193501-6193854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
12, 141
               

               
Conread position:
               
307-668
               

               
Cow position:
               
chr7:9047537-9047917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
123, 16
               

               
Conread position:
               
308-511
               

               
Cow position:
               
chr7:45585771-45585573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
311-676
               

               
Cow position:
               
chr7:26493391-26493008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
121, 37
               

               
Conread position:
               
312-489
               

               
Cow position:
               
chr7:46464480-46464311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
312-635
               

               
Cow position:
               
chr7:14811309-14810971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
178, 121
               

               
Conread position:
               
312-642
               

               
Cow position:
               
chr7:17983596-17983939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
152, 95
               

               
Conread position:
               
312-647
               

               
Cow position:
               
chr7:17834379-17834725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
116, 95
               

               
Conread position:
               
312-650
               

               
Cow position:
               
chr7:15814014-15814367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
174, 103
               

               
Conread position:
               
312-650
               

               
Cow position:
               
chr7:17796707-17796349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
118, 133
               

               
Conread position:
               
312-650
               

               
Cow position:
               
chr7:20889063-20889419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
31, 256
               

               
Conread position:
               
312-657
               

               
Cow position:
               
chr7:17392294-17391929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
144, 351
               

               
Conread position:
               
312-665
               

               
Cow position:
               
chr7:35756841-35757199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
119, 80
               

               
Conread position:
               
312-668
               

               
Cow position:
               
chr7:26599625-26600008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
116, 133
               

               
Conread position:
               
312-670
               

               
Cow position:
               
chr7:1215875-1216254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
120, 26
               

               
Conread position:
               
312-674
               

               
Cow position:
               
chr7:42161800-42162187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
111, 141
               

               
Conread position:
               
312-675
               

               
Cow position:
               
chr7:18352654-18353037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
179, 95
               

               
Conread position:
               
313-650
               

               
Cow position:
               
chr7:51473028-51472681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
178, 119
               

               
Conread position:
               
313-672
               

               
Cow position:
               
chr7:29112169-29112527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
178, 115
               

               
Conread position:
               
323-674
               

               
Cow position:
               
chr7:13052763-13053138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
107, 124
               

               
Conread position:
               
324-447
               

               
Cow position:
               
chr7:35744188-35744065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
324-485
               

               
Cow position:
               
chr7:9810144-9809984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
109, 131
               

               
Conread position:
               
324-494
               

               
Cow position:
               
chr7:27237149-27237316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
106, 34
               

               
Conread position:
               
324-650
               

               
Cow position:
               
chr7:14728833-14729169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
20, 129
               

               
Conread position:
               
324-650
               

               
Cow position:
               
chr7:26389305-26388954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
108, 121
               

               
Conread position:
               
324-658
               

               
Cow position:
               
chr7:37972521-37972175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
167, 19
               

               
Conread position:
               
324-664
               

               
Cow position:
               
chr7:14775302-14775663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
106, 121
               

               
Conread position:
               
324-668
               

               
Cow position:
               
chr7:1329149-1329522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
115, 126
               

               
Conread position:
               
324-668
               

               
Cow position:
               
chr7:15361745-15362089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
17, 28
               

               
Conread position:
               
324-673
               

               
Cow position:
               
chr7:8887714-8887330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
64, 55
               

               
Conread position:
               
324-673
               

               
Cow position:
               
chr7:13934354-13933981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
107, 128
               

               
Conread position:
               
324-673
               

               
Cow position:
               
chr7:15819260-15819623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
66, 128
               

               
Conread position:
               
324-674
               

               
Cow position:
               
chr7:16217629-16217254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
20, 78
               

               
Conread position:
               
324-675
               

               
Cow position:
               
chr7:7890349-7889967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
108, 121
               

               
Conread position:
               
324-675
               

               
Cow position:
               
chr7:17628438-17628810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
20, 50
               

               
Conread position:
               
325-511
               

               
Cow position:
               
chr7:20944977-20945159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
106, 83
               

               
Conread position:
               
325-511
               

               
Cow position:
               
chr7:24278443-24278259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
104, 120
               

               
Conread position:
               
326-449
               

               
Cow position:
               
chr7:9747849-9747723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
330-674
               

               
Cow position:
               
chr7:14891796-14892154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
121, 103
               

               
Conread position:
               
332-631
               

               
Cow position:
               
chr7:34798945-34798642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
101, 121
               

               
Conread position:
               
340-670
               

               
Cow position:
               
chr7:16093489-16093145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
92, 105
               

               
Conread position:
               
361-662
               

               
Cow position:
               
chr7:17710654-17710971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
100, 24
               

               
Conread position:
               
374-638
               

               
Cow position:
               
chr7:8405759-8405485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
54, 74
               

               
Conread position:
               
374-666
               

               
Cow position:
               
chr7:14790873-14791169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
58, 15
               

               
Conread position:
               
388-672
               

               
Cow position:
               
chr7:5579111-5579402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
58, 45
               

               
Conread position:
               
414-670
               

               
Cow position:
               
chr7:47110632-47110904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
18, 36
               

               
Conread position:
               
506-670
               

               
Cow position:
               
chr7:1833467-1833300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
5, 138
               

               
Conread position:
               
518-675
               

               
Cow position:
               
chr7:67656141-67655974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
308-674
               

               
Cow position:
               
chr8:38549199-38548805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
107, 41
               

               
Conread position:
               
312-578
               

               
Cow position:
               
chr8:19425332-19425055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
120, 143
               

               
Conread position:
               
312-627
               

               
Cow position:
               
chr8:23900030-23900365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
32, 57
               

               
Conread position:
               
312-660
               

               
Cow position:
               
chr8:45568327-45567958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
105, 146
               

               
Conread position:
               
312-670
               

               
Cow position:
               
chr8:10843003-10843362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
120, 47
               

               
Conread position:
               
312-670
               

               
Cow position:
               
chr8:48740943-48741310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
118, 85
               

               
Conread position:
               
314-665
               

               
Cow position:
               
chr8:29292219-29291849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
118, 29
               

               
Conread position:
               
315-675
               

               
Cow position:
               
chr8:40805360-40804996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
117, 130
               

               
Conread position:
               
324-489
               

               
Cow position:
               
chr8:28120088-28119925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
65, 47
               

               
Conread position:
               
324-490
               

               
Cow position:
               
chr8:28177914-28177751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
108, 37
               

               
Conread position:
               
324-655
               

               
Cow position:
               
chr8:29439407-29439067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
41, 77
               

               
Conread position:
               
324-666
               

               
Cow position:
               
chr8:39596798-39597139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
35, 27
               

               
Conread position:
               
324-670
               

               
Cow position:
               
chr8:26672607-26672966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
176, 90
               

               
Conread position:
               
324-670
               

               
Cow position:
               
chr8:35275127-35275490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
29, 118
               

               
Conread position:
               
324-670
               

               
Cow position:
               
chr8:38365154-38365527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
15, 56
               

               
Conread position:
               
324-670
               

               
Cow position:
               
chr8:56411187-56411543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
57, 129
               

               
Conread position:
               
324-674
               

               
Cow position:
               
chr8:21351119-21351498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
18, 32
               

               
Conread position:
               
324-674
               

               
Cow position:
               
chr8:30553703-30553336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
106, 121
               

               
Conread position:
               
324-675
               

               
Cow position:
               
chr8:28293463-28293087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
167, 109
               

               
Conread position:
               
325-489
               

               
Cow position:
               
chr8:19637527-19637366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
105, 128
               

               
Conread position:
               
325-489
               

               
Cow position:
               
chr8:24830735-24830898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
30, 68
               

               
Conread position:
               
325-660
               

               
Cow position:
               
chr8:7296354-7296023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
107, 119
               

               
Conread position:
               
325-660
               

               
Cow position:
               
chr8:7339715-7339384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
107, 119
               

               
Conread position:
               
325-664
               

               
Cow position:
               
chr8:38377637-38377988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
106, 255
               

               
Conread position:
               
330-616
               

               
Cow position:
               
chr8:40691655-40691350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
94, 88
               

               
Conread position:
               
331-679
               

               
Cow position:
               
chr8:48615977-48615612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
99, 73
               

               
Conread position:
               
334-650
               

               
Cow position:
               
chr8:19709396-19709073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
82, 38
               

               
Conread position:
               
337-675
               

               
Cow position:
               
chr8:28248080-28248416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
91, 116
               

               
Conread position:
               
338-675
               

               
Cow position:
               
chr8:35358456-35358111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
94, 13
               

               
Conread position:
               
338-676
               

               
Cow position:
               
chr8:2316520-2316871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
27, 55
               

               
Conread position:
               
359-669
               

               
Cow position:
               
chr8:40031696-40031392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
74, 35
               

               
Conread position:
               
488-677
               

               
Cow position:
               
chr8:21187471-21187274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
8, 89
               

               
Conread position:
               
503-670
               

               
Cow position:
               
chr8:37547597-37547415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
304-661
               

               
Cow position:
               
chr9:19535505-19535123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
311-675
               

               
Cow position:
               
chr9:27368854-27368497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
120, 93
               

               
Conread position:
               
313-498
               

               
Cow position:
               
chr9:39199965-39200149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
81, 133
               

               
Conread position:
               
315-674
               

               
Cow position:
               
chr9:14798505-14798875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
117, 36
               

               
Conread position:
               
315-675
               

               
Cow position:
               
chr9:19902561-19902173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
25, 51
               

               
Conread position:
               
324-489
               

               
Cow position:
               
chr9:35023730-35023895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
127, 49
               

               
Conread position:
               
324-503
               

               
Cow position:
               
chr9:25011039-25010864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
106, 62
               

               
Conread position:
               
324-568
               

               
Cow position:
               
chr9:48140279-48140037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
54, 119
               

               
Conread position:
               
324-645
               

               
Cow position:
               
chr9:54919637-54919321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
46, 127
               

               
Conread position:
               
324-664
               

               
Cow position:
               
chr9:21741362-21741027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
94, 68
               

               
Conread position:
               
324-666
               

               
Cow position:
               
chr9:5864450-5864794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
108, 19
               

               
Conread position:
               
324-679
               

               
Cow position:
               
chr9:38419457-38419815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
108, 24
               

               
Conread position:
               
326-666
               

               
Cow position:
               
chr9:32606616-32606966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
164, 101
               

               
Conread position:
               
326-670
               

               
Cow position:
               
chr9:3838726-3839084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
51, 39
               

               
Conread position:
               
327-650
               

               
Cow position:
               
chr9:50784684-50785019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
124, 22
               

               
Conread position:
               
334-667
               

               
Cow position:
               
chr9:19594046-19594395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
97, 78
               

               
Conread position:
               
373-675
               

               
Cow position:
               
chr9:52434094-52433779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
9, 71
               

               
Conread position:
               
377-675
               

               
Cow position:
               
chr9:25020486-25020170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
74, 57
               

               
Conread position:
               
511-675
               

               
Cow position:
               
chr9:47398585-47398752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
52, 133
               

               
Conread position:
               
304-609
               

               
Cow position:
               
chrX:37231417-37231740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
128, 286
               

               
Conread position:
               
304-650
               

               
Cow position:
               
chrX:1518682-1518338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
163, 119
               

               
Conread position:
               
307-568
               

               
Cow position:
               
chrX:39236779-39237036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
48, 43
               

               
Conread position:
               
310-429
               

               
Cow position:
               
chrX:43006854-43006735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
66, 55
               

               
Conread position:
               
310-489
               

               
Cow position:
               
chrX:25924774-25924596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
122, 135
               

               
Conread position:
               
312-461
               

               
Cow position:
               
chrX:15304560-15304412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
66, 59
               

               
Conread position:
               
312-489
               

               
Cow position:
               
chrX:37576081-37576253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
312-489
               

               
Cow position:
               
chrX:39288403-39288228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
51, 61
               

               
Conread position:
               
312-578
               

               
Cow position:
               
chrX:5909732-5909451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
170, 52
               

               
Conread position:
               
312-673
               

               
Cow position:
               
chrX:5507440-5507829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
120, 26
               

               
Conread position:
               
313-671
               

               
Cow position:
               
chrX:37128615-37128987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
187, 15
               

               
Conread position:
               
314-650
               

               
Cow position:
               
chrX:8926485-8926826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
175, 104
               

               
Conread position:
               
315-675
               

               
Cow position:
               
chrX:19320356-19320715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
117, 126
               

               
Conread position:
               
324-489
               

               
Cow position:
               
chrX:37949553-37949717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
108, 131
               

               
Conread position:
               
324-566
               

               
Cow position:
               
chrX:11908793-11908553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
175, 123
               

               
Conread position:
               
324-631
               

               
Cow position:
               
chrX:508377-508052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
91, 73
               

               
Conread position:
               
324-642
               

               
Cow position:
               
chrX:20178460-20178139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
8, 13
               

               
Conread position:
               
324-657
               

               
Cow position:
               
chrX:31839286-31839637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
104, 126
               

               
Conread position:
               
324-670
               

               
Cow position:
               
chrX:39187590-39187213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
12, 22
               

               
Conread position:
               
324-673
               

               
Cow position:
               
chrX:16229198-16228843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
146, 125
               

               
Conread position:
               
324-675
               

               
Cow position:
               
chrX:31260278-31259904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
189, 94
               

               
Conread position:
               
324-675
               

               
Cow position:
               
chrX:43789081-43788711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
324-680
               

               
Cow position:
               
chrX:23081070-23081440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
106, 25
               

               
Conread position:
               
325-637
               

               
Cow position:
               
chrX:37411564-37411892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
175, 26
               

               
Conread position:
               
325-638
               

               
Cow position:
               
chrX:17617543-17617226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
175, 83
               

               
Conread position:
               
326-640
               

               
Cow position:
               
chrX:39463303-39462965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
166, 107
               

               
Conread position:
               
327-489
               

               
Cow position:
               
chrX:41701697-41701861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
104, 5
               

               
Conread position:
               
327-645
               

               
Cow position:
               
chrX:40253960-40254295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
105, 128
               

               
Conread position:
               
328-579
               

               
Cow position:
               
chrX:16988769-16989008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
235, 16
               

               
Conread position:
               
330-677
               

               
Cow position:
               
chrX:31275607-31275241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
94, 14
               

               
Conread position:
               
335-675
               

               
Cow position:
               
chrX:5566032-5565680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
97, 33
               

               
Conread position:
               
336-600
               

               
Cow position:
               
chrX:5069560-5069286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
96, 128
               

               
Conread position:
               
336-629
               

               
Cow position:
               
chrX:41305844-41305540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
88, 181
               

               
Conread position:
               
338-649
               

               
Cow position:
               
chrX:17485935-17485612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
138, 95
               

               
Conread position:
               
338-675
               

               
Cow position:
               
chrX:26845308-26845665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
94, 98
               

               
Conread position:
               
339-608
               

               
Cow position:
               
chrX:30074198-30074475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
138, 80
               

               
Conread position:
               
339-666
               

               
Cow position:
               
chrX:11529314-11528968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
93, 316
               

               
Conread position:
               
340-670
               

               
Cow position:
               
chrX:36294921-36295260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
70, 113
               

               
Conread position:
               
377-675
               

               
Cow position:
               
chrX:36270058-36270369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
55, 73
               

               
Conread position:
               
385-670
               

               
Cow position:
               
chrX:21191626-21191920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
66, 45
               

               
Conread position:
               
399-670
               

               
Cow position:
               
chrX:822801-822512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
30, 55
               

               
Conread position:
               
451-684
               

               
Cow position:
               
chrX:13523626-13523384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
40, 127