Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8050O19.3 |
| Conread position: | 43-201 |
| Cow position: | chr1:48825659-48825808 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 156, 50 |
| Conread position: | 182-1004 |
| Cow position: | chr1:48826079-48826883 (view UCSC Genome Browser custom track) |
| Alignm length: | 830 |
| Alignm identity: | 642 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 75 |
| Conread position: | 389-756 |
| Cow position: | chr1:70312303-70311918 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 247 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 185, 139 |
| Conread position: | 405-700 |
| Cow position: | chr1:39722260-39722566 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 205 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 89, 111 |
| Conread position: | 390-590 |
| Cow position: | chr10:65295571-65295376 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 132, 87 |
| Conread position: | 404-565 |
| Cow position: | chr10:25879216-25879053 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 118 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 52, 146 |
| Conread position: | 427-738 |
| Cow position: | chr10:57369033-57369360 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 187, 119 |
| Conread position: | 434-702 |
| Cow position: | chr10:33448481-33448749 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 94, 77 |
| Conread position: | 389-725 |
| Cow position: | chr11:35142641-35142988 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 98, 157 |
| Conread position: | 977-1299 |
| Cow position: | chr11:46193571-46193250 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 209 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 128, 33 |
| Conread position: | 388-728 |
| Cow position: | chr12:8728094-8727751 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 52, 43 |
| Conread position: | 385-709 |
| Cow position: | chr13:19114649-19114984 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 13, 169 |
| Conread position: | 391-739 |
| Cow position: | chr13:19835839-19835494 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 233 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 97, 41 |
| Conread position: | 379-729 |
| Cow position: | chr14:19417208-19417566 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 28, 137 |
| Conread position: | 940-1343 |
| Cow position: | chr14:36110633-36110219 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 279 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 111, 68 |
| Conread position: | 389-735 |
| Cow position: | chr15:20518488-20518130 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 227 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 154, 135 |
| Conread position: | 397-741 |
| Cow position: | chr15:34920029-34920386 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 233 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 90, 76 |
| Conread position: | 379-725 |
| Cow position: | chr16:24210096-24210456 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 230 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 108, 167 |
| Conread position: | 963-1302 |
| Cow position: | chr16:39368075-39367737 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 230 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 87, 40 |
| Conread position: | 409-549 |
| Cow position: | chr18:318431-318574 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 106 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 410-722 |
| Cow position: | chr18:6059371-6059686 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 207 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 85, 46 |
| Conread position: | 954-1344 |
| Cow position: | chr19:535458-535852 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 271 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 52, 102 |
| Conread position: | 374-713 |
| Cow position: | chr2:43811890-43811547 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 219 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 166, 118 |
| Conread position: | 392-742 |
| Cow position: | chr2:80439069-80438710 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 237 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 35, 127 |
| Conread position: | 391-741 |
| Cow position: | chr21:21291335-21291688 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 229 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 104, 168 |
| Conread position: | 399-740 |
| Cow position: | chr21:16512381-16512039 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 224 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 31, 67 |
| Conread position: | 418-741 |
| Cow position: | chr21:37862317-37861990 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 222 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 71, 98 |
| Conread position: | 427-718 |
| Cow position: | chr21:15925292-15924988 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 137, 39 |
| Conread position: | 389-739 |
| Cow position: | chr22:3758854-3759212 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 245 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 106, 53 |
| Conread position: | 963-1287 |
| Cow position: | chr22:9659730-9659406 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 98, 46 |
| Conread position: | 1009-1329 |
| Cow position: | chr22:305416-305722 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 222 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 42, 11 |
| Conread position: | 417-593 |
| Cow position: | chr23:36604228-36604059 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 48, 55 |
| Conread position: | 374-713 |
| Cow position: | chr25:19016624-19016976 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 203, 112 |
| Conread position: | 374-741 |
| Cow position: | chr25:35931260-35931649 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 69, 18 |
| Conread position: | 393-707 |
| Cow position: | chr26:30813716-30813394 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 108, 156 |
| Conread position: | 422-716 |
| Cow position: | chr26:16722636-16722328 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 211 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 175, 116 |
| Conread position: | 379-716 |
| Cow position: | chr3:27515208-27514872 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 215 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 19, 123 |
| Conread position: | 394-734 |
| Cow position: | chr3:30003148-30002808 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 220 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 146, 182 |
| Conread position: | 423-740 |
| Cow position: | chr3:33759553-33759879 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 216 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 127, 66 |
| Conread position: | 959-1259 |
| Cow position: | chr3:49310433-49310131 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 210 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 151, 44 |
| Conread position: | 1000-1280 |
| Cow position: | chr3:2825117-2825397 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 12, 81 |
| Conread position: | 389-713 |
| Cow position: | chr4:49002302-49001971 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 217 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 202, 144 |
| Conread position: | 401-695 |
| Cow position: | chr4:45233777-45234079 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 145, 134 |
| Conread position: | 472-715 |
| Cow position: | chr4:61821793-61821539 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 124, 74 |
| Conread position: | 379-757 |
| Cow position: | chr5:21118628-21118248 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 111, 136 |
| Conread position: | 401-740 |
| Cow position: | chr5:74476049-74475694 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 13, 347 |
| Conread position: | 961-1179 |
| Cow position: | chr5:48859751-48859536 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 90, 42 |
| Conread position: | 971-1185 |
| Cow position: | chr5:6185403-6185619 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 56, 32 |
| Conread position: | 375-576 |
| Cow position: | chr6:1765663-1765465 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 399-741 |
| Cow position: | chr6:7736033-7736398 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 244 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 73, 188 |
| Conread position: | 472-732 |
| Cow position: | chr6:42048895-42048619 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 189 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 84, 231 |
| Conread position: | 394-544 |
| Cow position: | chr7:35867387-35867537 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 417-718 |
| Cow position: | chr7:29744535-29744856 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 217 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 43, 53 |
| Conread position: | 978-1339 |
| Cow position: | chr7:58379777-58379417 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 246 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 134, 22 |
| Conread position: | 386-740 |
| Cow position: | chr8:12669543-12669895 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 235 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 14, 81 |
| Conread position: | 410-741 |
| Cow position: | chr8:35444096-35444442 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 221 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 136, 337 |
| Conread position: | 404-581 |
| Cow position: | chr9:23405297-23405125 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 175, 13 |
| Conread position: | 389-713 |
| Cow position: | chrX:37851924-37851588 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 98, 152 |
| Conread position: | 389-758 |
| Cow position: | chrX:12865556-12865183 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 246 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 134, 122 |
| Conread position: | 411-596 |
| Cow position: | chrX:7909633-7909814 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 53, 62 |
| Conread position: | 417-729 |
| Cow position: | chrX:27304689-27304369 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 206 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 70, 137 |