Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8052A12.5 |
| Conread position: | 204-676 |
| Cow position: | chr1:76066011-76065543 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 38 |
| Conread position: | 207-457 |
| Cow position: | chr1:83026526-83026273 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 142, 63 |
| Conread position: | 207-691 |
| Cow position: | chr1:86281095-86280613 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 57 |
| Conread position: | 243-671 |
| Cow position: | chr1:97183516-97183921 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 264, 27 |
| Conread position: | 480-717 |
| Cow position: | chr1:83026271-83026032 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 48 |
| Conread position: | 502-710 |
| Cow position: | chr1:76070360-76070152 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 105, 34 |
| Conread position: | 502-710 |
| Cow position: | chr1:76073798-76073590 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 105, 34 |
| Conread position: | 318-651 |
| Cow position: | chr10:28514817-28515148 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 236 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 22, 44 |
| Conread position: | 205-431 |
| Cow position: | chr11:75288174-75288399 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 168 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 16, 62 |
| Conread position: | 205-571 |
| Cow position: | chr11:30131335-30131697 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 65 |
| Conread position: | 205-606 |
| Cow position: | chr11:42405198-42405597 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 69 |
| Conread position: | 389-702 |
| Cow position: | chr11:45889203-45889521 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 0 |
| Conread position: | 405-699 |
| Cow position: | chr11:50367598-50367893 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 26 |
| Conread position: | 511-700 |
| Cow position: | chr12:34474595-34474402 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 205-573 |
| Cow position: | chr13:56479096-56478737 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 254 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 135, 69 |
| Conread position: | 177-509 |
| Cow position: | chr14:15518947-15519256 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 210-343 |
| Cow position: | chr14:4539045-4539176 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 429-573 |
| Cow position: | chr14:4539528-4539671 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 203-724 |
| Cow position: | chr15:13133147-13133652 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 57 |
| Conread position: | 205-710 |
| Cow position: | chr15:34759513-34759020 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 65 |
| Conread position: | 206-499 |
| Cow position: | chr15:38542533-38542261 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 207 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 528-702 |
| Cow position: | chr15:38519223-38519402 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 540-654 |
| Cow position: | chr15:38542011-38541897 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 67, 8 |
| Conread position: | 204-675 |
| Cow position: | chr16:27148555-27149024 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 66 |
| Conread position: | 205-702 |
| Cow position: | chr16:17748873-17748387 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 402, 66 |
| Conread position: | 207-590 |
| Cow position: | chr17:6525759-6525377 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 268 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 132, 57 |
| Conread position: | 217-350 |
| Cow position: | chr17:8909030-8908893 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 206-676 |
| Cow position: | chr18:8499780-8499322 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 58 |
| Conread position: | 464-702 |
| Cow position: | chr18:388569-388327 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 0 |
| Conread position: | 177-441 |
| Cow position: | chr19:55840655-55840391 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 191 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 77, 29 |
| Conread position: | 205-487 |
| Cow position: | chr2:5518474-5518211 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 206 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 217, 22 |
| Conread position: | 205-569 |
| Cow position: | chr2:76047778-76047424 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 60 |
| Conread position: | 205-714 |
| Cow position: | chr2:82127210-82127711 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 50 |
| Conread position: | 207-603 |
| Cow position: | chr2:58544229-58544618 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 23 |
| Conread position: | 389-681 |
| Cow position: | chr2:939005-938721 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 16 |
| Conread position: | 464-709 |
| Cow position: | chr2:76035139-76034889 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 187 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 145, 48 |
| Conread position: | 496-710 |
| Cow position: | chr2:5517827-5517614 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 50, 116 |
| Conread position: | 203-640 |
| Cow position: | chr20:25882962-25883384 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 61 |
| Conread position: | 265-594 |
| Cow position: | chr20:18835115-18834777 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 29, 33 |
| Conread position: | 208-700 |
| Cow position: | chr21:15345817-15346311 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 66 |
| Conread position: | 389-623 |
| Cow position: | chr21:4478272-4478037 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 0 |
| Conread position: | 204-717 |
| Cow position: | chr22:4591182-4590664 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 67 |
| Conread position: | 207-702 |
| Cow position: | chr22:12526491-12526981 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 372, 56 |
| Conread position: | 453-584 |
| Cow position: | chr22:12520033-12519907 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 205-513 |
| Cow position: | chr23:467434-467736 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 221 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 161, 59 |
| Conread position: | 437-702 |
| Cow position: | chr23:26238178-26238444 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 101 |
| Conread position: | 552-709 |
| Cow position: | chr23:467743-467904 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 193-667 |
| Cow position: | chr24:25502372-25502826 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 67 |
| Conread position: | 434-710 |
| Cow position: | chr25:23496037-23496313 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 124 |
| Conread position: | 205-710 |
| Cow position: | chr26:27451276-27451769 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 22 |
| Conread position: | 219-713 |
| Cow position: | chr28:28452502-28452012 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 45 |
| Conread position: | 1-1285 |
| Cow position: | chr29:20563149-20561876 (view UCSC Genome Browser custom track) |
| Alignm length: | 1325 |
| Alignm identity: | 984 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 169 |
| Conread position: | 204-560 |
| Cow position: | chr3:30379102-30379453 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 254 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 141, 59 |
| Conread position: | 204-701 |
| Cow position: | chr3:14065632-14066123 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 329 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 101, 68 |
| Conread position: | 205-331 |
| Cow position: | chr3:73193967-73193843 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 392-700 |
| Cow position: | chr3:73193581-73193271 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 95 |
| Conread position: | 205-564 |
| Cow position: | chr4:35014167-35013807 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 69 |
| Conread position: | 207-698 |
| Cow position: | chr4:60707750-60708212 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 58 |
| Conread position: | 280-710 |
| Cow position: | chr4:2123198-2122766 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 327, 53 |
| Conread position: | 199-710 |
| Cow position: | chr5:19877818-19877315 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 408, 7 |
| Conread position: | 204-510 |
| Cow position: | chr5:21459504-21459198 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 221 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 110, 71 |
| Conread position: | 204-676 |
| Cow position: | chr5:18758101-18758556 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 369, 71 |
| Conread position: | 204-702 |
| Cow position: | chr5:18543274-18543750 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 404, 71 |
| Conread position: | 205-710 |
| Cow position: | chr5:35078950-35079466 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 358 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 139, 22 |
| Conread position: | 387-726 |
| Cow position: | chr5:21461212-21460879 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 222, 61 |
| Conread position: | 397-710 |
| Cow position: | chr5:52660151-52660455 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 34 |
| Conread position: | 202-653 |
| Cow position: | chr6:6741998-6741553 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 72 |
| Conread position: | 211-581 |
| Cow position: | chr6:60280779-60281144 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 241 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 60, 82 |
| Conread position: | 276-571 |
| Cow position: | chr6:6758908-6759199 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 203 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 65, 48 |
| Conread position: | 389-717 |
| Cow position: | chr6:36543774-36544101 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 124 |
| Conread position: | 437-701 |
| Cow position: | chr6:60109537-60109799 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 201 |
| Conread position: | 486-702 |
| Cow position: | chr6:21645531-21645315 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 176 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 123, 102 |
| Conread position: | 556-709 |
| Cow position: | chr6:6759408-6759563 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 205-476 |
| Cow position: | chr8:44089220-44089486 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 194, 22 |
| Conread position: | 222-601 |
| Cow position: | chr8:12663045-12662683 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 258 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 8, 24 |
| Conread position: | 291-702 |
| Cow position: | chr8:52979106-52978699 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 33 |
| Conread position: | 504-709 |
| Cow position: | chr8:1758106-1757898 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 99, 143 |
| Conread position: | 195-369 |
| Cow position: | chr9:36834033-36833865 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 204-490 |
| Cow position: | chr9:17587633-17587347 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 201 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 147, 50 |
| Conread position: | 388-672 |
| Cow position: | chr9:20517306-20517594 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 210 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 60, 18 |
| Conread position: | 496-702 |
| Cow position: | chr9:36833475-36833266 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 47, 163 |
| Conread position: | 522-710 |
| Cow position: | chr9:17587078-17586886 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 202-588 |
| Cow position: | chrX:40627627-40627239 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 62 |
| Conread position: | 495-717 |
| Cow position: | chrX:28857182-28856957 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 108, 150 |