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Cow genome map

           
Conread name:
           
Ss1.1-Pig4-TMW8054M19.5
        

               
Conread position:
               
220-804
               

               
Cow position:
               
chr1:38417298-38417879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
603
               

               
Alignm identity:
               
404
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 20
               

               
Conread position:
               
224-820
               

               
Cow position:
               
chr1:32566757-32566156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
623
               

               
Alignm identity:
               
435
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 21
               

               
Conread position:
               
224-820
               

               
Cow position:
               
chr1:55275866-55275256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
623
               

               
Alignm identity:
               
440
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 21
               

               
Conread position:
               
225-483
               

               
Cow position:
               
chr1:61310386-61310650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
74, 20
               

               
Conread position:
               
225-550
               

               
Cow position:
               
chr1:89430035-89430361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
73, 20
               

               
Conread position:
               
225-673
               

               
Cow position:
               
chr1:5356291-5356754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 20
               

               
Conread position:
               
225-714
               

               
Cow position:
               
chr1:20525642-20526148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 20
               

               
Conread position:
               
225-788
               

               
Cow position:
               
chr1:4209371-4209951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
587
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 20
               

               
Conread position:
               
225-818
               

               
Cow position:
               
chr1:69767743-69768352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
619
               

               
Alignm identity:
               
436
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 20
               

               
Conread position:
               
225-819
               

               
Cow position:
               
chr1:9259648-9260259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
620
               

               
Alignm identity:
               
427
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 20
               

               
Conread position:
               
225-820
               

               
Cow position:
               
chr1:17011569-17010963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
616
               

               
Alignm identity:
               
436
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 20
               

               
Conread position:
               
225-820
               

               
Cow position:
               
chr1:17035422-17034820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
614
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 20
               

               
Conread position:
               
225-820
               

               
Cow position:
               
chr1:21088596-21089206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
618
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 20
               

               
Conread position:
               
225-820
               

               
Cow position:
               
chr1:29363466-29364070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
617
               

               
Alignm identity:
               
436
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 20
               

               
Conread position:
               
225-820
               

               
Cow position:
               
chr1:33897423-33898035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
620
               

               
Alignm identity:
               
441
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 20
               

               
Conread position:
               
225-820
               

               
Cow position:
               
chr1:40056269-40056879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
621
               

               
Alignm identity:
               
445
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 20
               

               
Conread position:
               
225-820
               

               
Cow position:
               
chr1:40683577-40682967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
620
               

               
Alignm identity:
               
433
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 20
               

               
Conread position:
               
225-820
               

               
Cow position:
               
chr1:53199708-53200319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
620
               

               
Alignm identity:
               
437
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 20
               

               
Conread position:
               
225-820
               

               
Cow position:
               
chr1:57423669-57423057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
620
               

               
Alignm identity:
               
438
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 20
               

               
Conread position:
               
225-820
               

               
Cow position:
               
chr1:67833966-67833358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
622
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 20
               

               
Conread position:
               
225-820
               

               
Cow position:
               
chr1:85792844-85793456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
620
               

               
Alignm identity:
               
438
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 20
               

               
Conread position:
               
225-820
               

               
Cow position:
               
chr1:91900189-91900797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
621
               

               
Alignm identity:
               
431
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 20
               

               
Conread position:
               
225-823
               

               
Cow position:
               
chr1:20830056-20830673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
624
               

               
Alignm identity:
               
440
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 20
               

               
Conread position:
               
227-650
               

               
Cow position:
               
chr1:72038398-72037975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
72, 18
               

               
Conread position:
               
227-820
               

               
Cow position:
               
chr1:24652445-24653039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
613
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 18
               

               
Conread position:
               
227-820
               

               
Cow position:
               
chr1:31364931-31364328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
610
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 18
               

               
Conread position:
               
227-820
               

               
Cow position:
               
chr1:33713236-33713856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
629
               

               
Alignm identity:
               
445
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 18
               

               
Conread position:
               
228-740
               

               
Cow position:
               
chr1:86595327-86594799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
535
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 189
               

               
Conread position:
               
228-820
               

               
Cow position:
               
chr1:89495043-89494455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
622
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
28, 20
               

               
Conread position:
               
229-800
               

               
Cow position:
               
chr1:55320912-55320329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
395
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 257
               

               
Conread position:
               
229-820
               

               
Cow position:
               
chr1:29035448-29036073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
637
               

               
Alignm identity:
               
436
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 278
               

               
Conread position:
               
229-820
               

               
Cow position:
               
chr1:79635815-79635224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
607
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 16
               

               
Conread position:
               
229-820
               

               
Cow position:
               
chr1:81288301-81288910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
615
               

               
Alignm identity:
               
430
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 257
               

               
Conread position:
               
230-820
               

               
Cow position:
               
chr1:88131944-88132551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
617
               

               
Alignm identity:
               
435
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 15
               

               
Conread position:
               
231-527
               

               
Cow position:
               
chr1:30519768-30520067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
38, 14
               

               
Conread position:
               
231-820
               

               
Cow position:
               
chr1:22619468-22618898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 22
               

               
Conread position:
               
231-820
               

               
Cow position:
               
chr1:55777752-55778361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
624
               

               
Alignm identity:
               
430
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 14
               

               
Conread position:
               
231-820
               

               
Cow position:
               
chr1:69404178-69404775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
611
               

               
Alignm identity:
               
431
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 22
               

               
Conread position:
               
231-820
               

               
Cow position:
               
chr1:73069895-73069285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
621
               

               
Alignm identity:
               
437
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 14
               

               
Conread position:
               
231-820
               

               
Cow position:
               
chr1:82922981-82922389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
606
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 29
               

               
Conread position:
               
232-485
               

               
Cow position:
               
chr1:57569138-57569402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
63, 13
               

               
Conread position:
               
232-819
               

               
Cow position:
               
chr1:33552099-33552711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
619
               

               
Alignm identity:
               
438
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 13
               

               
Conread position:
               
232-820
               

               
Cow position:
               
chr1:8826217-8826829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
620
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 13
               

               
Conread position:
               
232-820
               

               
Cow position:
               
chr1:26517715-26517114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
610
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 13
               

               
Conread position:
               
232-820
               

               
Cow position:
               
chr1:56164720-56165299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
610
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 10
               

               
Conread position:
               
232-820
               

               
Cow position:
               
chr1:62804999-62804401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
611
               

               
Alignm identity:
               
433
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 13
               

               
Conread position:
               
232-820
               

               
Cow position:
               
chr1:65387496-65388087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
604
               

               
Alignm identity:
               
432
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 13
               

               
Conread position:
               
232-820
               

               
Cow position:
               
chr1:72081948-72082531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
603
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 13
               

               
Conread position:
               
232-820
               

               
Cow position:
               
chr1:79455782-79455180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
613
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 13
               

               
Conread position:
               
232-820
               

               
Cow position:
               
chr1:82653836-82654428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
610
               

               
Alignm identity:
               
430
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 13
               

               
Conread position:
               
232-820
               

               
Cow position:
               
chr1:91891949-91891346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
612
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 13
               

               
Conread position:
               
232-820
               

               
Cow position:
               
chr1:93855689-93856287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
612
               

               
Alignm identity:
               
434
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 13
               

               
Conread position:
               
232-820
               

               
Cow position:
               
chr1:94660846-94661444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
609
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 13
               

               
Conread position:
               
232-820
               

               
Cow position:
               
chr1:99914598-99915210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
624
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 13
               

               
Conread position:
               
232-829
               

               
Cow position:
               
chr1:42737618-42738212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
614
               

               
Alignm identity:
               
438
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 13
               

               
Conread position:
               
233-794
               

               
Cow position:
               
chr1:40511844-40511274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
582
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 53
               

               
Conread position:
               
233-820
               

               
Cow position:
               
chr1:25551134-25551745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
618
               

               
Alignm identity:
               
440
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 254
               

               
Conread position:
               
233-820
               

               
Cow position:
               
chr1:30533849-30533247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
608
               

               
Alignm identity:
               
433
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 252
               

               
Conread position:
               
233-820
               

               
Cow position:
               
chr1:72984656-72985225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
603
               

               
Alignm identity:
               
416
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 26
               

               
Conread position:
               
233-820
               

               
Cow position:
               
chr1:102433869-102433259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
618
               

               
Alignm identity:
               
426
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 12
               

               
Conread position:
               
234-438
               

               
Cow position:
               
chr1:89769540-89769326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
234-806
               

               
Cow position:
               
chr1:85532189-85531604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
602
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 26
               

               
Conread position:
               
235-805
               

               
Cow position:
               
chr1:16586903-16586373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
575
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
106, 10
               

               
Conread position:
               
235-822
               

               
Cow position:
               
chr1:34693858-34694463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
614
               

               
Alignm identity:
               
430
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 13
               

               
Conread position:
               
236-538
               

               
Cow position:
               
chr1:30063540-30063838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 9
               

               
Conread position:
               
236-783
               

               
Cow position:
               
chr1:73197848-73197300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
564
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 9
               

               
Conread position:
               
238-794
               

               
Cow position:
               
chr1:58177936-58177383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
572
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 7
               

               
Conread position:
               
238-821
               

               
Cow position:
               
chr1:82477150-82477752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
609
               

               
Alignm identity:
               
431
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 85
               

               
Conread position:
               
241-820
               

               
Cow position:
               
chr1:86546957-86546362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
604
               

               
Alignm identity:
               
428
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 81
               

               
Conread position:
               
242-552
               

               
Cow position:
               
chr1:86611317-86611626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
57, 87
               

               
Conread position:
               
242-617
               

               
Cow position:
               
chr1:57972524-57972142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
58, 46
               

               
Conread position:
               
242-645
               

               
Cow position:
               
chr1:57696979-57696571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 223
               

               
Conread position:
               
242-749
               

               
Cow position:
               
chr1:32909008-32909516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
58, 83
               

               
Conread position:
               
242-767
               

               
Cow position:
               
chr1:29039222-29039755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 87
               

               
Conread position:
               
242-767
               

               
Cow position:
               
chr1:43984923-43984385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
58, 169
               

               
Conread position:
               
242-786
               

               
Cow position:
               
chr1:24206479-24205975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
555
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
43, 86
               

               
Conread position:
               
242-804
               

               
Cow position:
               
chr1:60933252-60932673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
589
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
58, 17
               

               
Conread position:
               
242-818
               

               
Cow position:
               
chr1:91597521-91596939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
601
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
22, 17
               

               
Conread position:
               
242-820
               

               
Cow position:
               
chr1:33852457-33853044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
596
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 80
               

               
Conread position:
               
242-820
               

               
Cow position:
               
chr1:46836801-46837399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
604
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 169
               

               
Conread position:
               
242-820
               

               
Cow position:
               
chr1:56724335-56724919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
602
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 9
               

               
Conread position:
               
242-820
               

               
Cow position:
               
chr1:63502995-63503565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 84
               

               
Conread position:
               
242-820
               

               
Cow position:
               
chr1:91529464-91528886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
30, 64
               

               
Conread position:
               
242-821
               

               
Cow position:
               
chr1:38419854-38420419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
58, 17
               

               
Conread position:
               
242-822
               

               
Cow position:
               
chr1:98658727-98658145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 20
               

               
Conread position:
               
242-822
               

               
Cow position:
               
chr1:102014297-102014856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
55, 36
               

               
Conread position:
               
244-781
               

               
Cow position:
               
chr1:41519578-41519078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 36
               

               
Conread position:
               
245-505
               

               
Cow position:
               
chr1:11860061-11859801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
55, 112
               

               
Conread position:
               
245-726
               

               
Cow position:
               
chr1:99018825-99018346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 83
               

               
Conread position:
               
245-820
               

               
Cow position:
               
chr1:3934074-3933485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
426
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 214
               

               
Conread position:
               
245-820
               

               
Cow position:
               
chr1:5503152-5503738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 233
               

               
Conread position:
               
245-820
               

               
Cow position:
               
chr1:39544970-39545559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 123
               

               
Conread position:
               
245-820
               

               
Cow position:
               
chr1:52358075-52357484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
601
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 202
               

               
Conread position:
               
245-820
               

               
Cow position:
               
chr1:56143151-56142568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
427
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 80
               

               
Conread position:
               
245-820
               

               
Cow position:
               
chr1:63604588-63603996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
600
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 127
               

               
Conread position:
               
245-820
               

               
Cow position:
               
chr1:80357992-80357395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
604
               

               
Alignm identity:
               
426
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 77
               

               
Conread position:
               
245-826
               

               
Cow position:
               
chr1:85779260-85778674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
601
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 219
               

               
Conread position:
               
245-828
               

               
Cow position:
               
chr1:57658072-57658677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
613
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 240
               

               
Conread position:
               
246-818
               

               
Cow position:
               
chr1:38399207-38399745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
585
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 79
               

               
Conread position:
               
247-542
               

               
Cow position:
               
chr1:44972504-44972795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
53, 13
               

               
Conread position:
               
247-817
               

               
Cow position:
               
chr1:13581801-13581225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 126
               

               
Conread position:
               
247-820
               

               
Cow position:
               
chr1:28874263-28874843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
595
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 148
               

               
Conread position:
               
248-820
               

               
Cow position:
               
chr1:49972996-49972398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
604
               

               
Alignm identity:
               
416
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 250
               

               
Conread position:
               
251-676
               

               
Cow position:
               
chr1:31359596-31360015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
73, 54
               

               
Conread position:
               
251-743
               

               
Cow position:
               
chr1:40579044-40579533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
141, 49
               

               
Conread position:
               
251-818
               

               
Cow position:
               
chr1:51965466-51966050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
594
               

               
Alignm identity:
               
435
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 213
               

               
Conread position:
               
252-809
               

               
Cow position:
               
chr1:52939293-52939850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
575
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
48, 105
               

               
Conread position:
               
252-821
               

               
Cow position:
               
chr1:7409198-7408629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
594
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
48, 73
               

               
Conread position:
               
253-812
               

               
Cow position:
               
chr1:22905965-22906516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
581
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 76
               

               
Conread position:
               
253-820
               

               
Cow position:
               
chr1:79111679-79112226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
580
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 98
               

               
Conread position:
               
256-535
               

               
Cow position:
               
chr1:58338153-58338446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
42, 66
               

               
Conread position:
               
259-820
               

               
Cow position:
               
chr1:12061015-12060432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
591
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 232
               

               
Conread position:
               
261-583
               

               
Cow position:
               
chr1:91446662-91446971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
40, 64
               

               
Conread position:
               
261-818
               

               
Cow position:
               
chr1:51877808-51877244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
582
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 64
               

               
Conread position:
               
261-818
               

               
Cow position:
               
chr1:72185682-72185103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
586
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 219
               

               
Conread position:
               
261-820
               

               
Cow position:
               
chr1:3384744-3384164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
592
               

               
Alignm identity:
               
397
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 40
               

               
Conread position:
               
261-820
               

               
Cow position:
               
chr1:56192964-56192389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
583
               

               
Alignm identity:
               
404
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 61
               

               
Conread position:
               
261-820
               

               
Cow position:
               
chr1:68606347-68605767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
587
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 25
               

               
Conread position:
               
261-821
               

               
Cow position:
               
chr1:99315445-99315983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 60
               

               
Conread position:
               
262-504
               

               
Cow position:
               
chr1:21355244-21355003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
33, 63
               

               
Conread position:
               
262-623
               

               
Cow position:
               
chr1:82911953-82911576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
36, 162
               

               
Conread position:
               
262-767
               

               
Cow position:
               
chr1:40575411-40575922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 60
               

               
Conread position:
               
262-820
               

               
Cow position:
               
chr1:17940573-17939996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
584
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 220
               

               
Conread position:
               
262-820
               

               
Cow position:
               
chr1:81927439-81926900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
566
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 160
               

               
Conread position:
               
262-820
               

               
Cow position:
               
chr1:88387464-88387999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
570
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 32
               

               
Conread position:
               
262-821
               

               
Cow position:
               
chr1:24443162-24442584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
585
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 152
               

               
Conread position:
               
268-820
               

               
Cow position:
               
chr1:62243448-62242878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
576
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 218
               

               
Conread position:
               
268-821
               

               
Cow position:
               
chr1:18241011-18240457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
578
               

               
Alignm identity:
               
395
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 54
               

               
Conread position:
               
270-799
               

               
Cow position:
               
chr1:31417296-31416762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
555
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 53
               

               
Conread position:
               
271-555
               

               
Cow position:
               
chr1:66486931-66487217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
26, 97
               

               
Conread position:
               
271-645
               

               
Cow position:
               
chr1:18193104-18193496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 228
               

               
Conread position:
               
273-723
               

               
Cow position:
               
chr1:78923440-78923897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 52
               

               
Conread position:
               
280-647
               

               
Cow position:
               
chr1:89482049-89482418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
19, 42
               

               
Conread position:
               
283-821
               

               
Cow position:
               
chr1:53563244-53563770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
549
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
17, 68
               

               
Conread position:
               
297-442
               

               
Cow position:
               
chr1:91603658-91603516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
33, 77
               

               
Conread position:
               
297-616
               

               
Cow position:
               
chr1:81777664-81777983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
33, 186
               

               
Conread position:
               
297-676
               

               
Cow position:
               
chr1:7141399-7141012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
33, 95
               

               
Conread position:
               
297-783
               

               
Cow position:
               
chr1:89733249-89732785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 92
               

               
Conread position:
               
297-799
               

               
Cow position:
               
chr1:55155758-55155263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
254, 27
               

               
Conread position:
               
297-820
               

               
Cow position:
               
chr1:76620222-76619704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
534
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 106
               

               
Conread position:
               
297-820
               

               
Cow position:
               
chr1:76750726-76750197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 132
               

               
Conread position:
               
298-635
               

               
Cow position:
               
chr1:70419133-70418804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
177, 22
               

               
Conread position:
               
299-707
               

               
Cow position:
               
chr1:93235942-93236353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 157
               

               
Conread position:
               
299-820
               

               
Cow position:
               
chr1:77922948-77923483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
541
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 183
               

               
Conread position:
               
308-820
               

               
Cow position:
               
chr1:61590929-61590417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
536
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 7
               

               
Conread position:
               
310-805
               

               
Cow position:
               
chr1:16581264-16580798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
31, 42
               

               
Conread position:
               
321-822
               

               
Cow position:
               
chr1:39539674-39539217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
67, 27
               

               
Conread position:
               
324-810
               

               
Cow position:
               
chr1:81841199-81840737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
17, 147
               

               
Conread position:
               
324-818
               

               
Cow position:
               
chr1:16216194-16215717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 44
               

               
Conread position:
               
325-713
               

               
Cow position:
               
chr1:80445419-80445819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 155
               

               
Conread position:
               
325-730
               

               
Cow position:
               
chr1:82176004-82176431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
15, 86
               

               
Conread position:
               
325-745
               

               
Cow position:
               
chr1:53364836-53365236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
16, 64
               

               
Conread position:
               
325-820
               

               
Cow position:
               
chr1:26584370-26584874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 20
               

               
Conread position:
               
326-820
               

               
Cow position:
               
chr1:34683182-34683673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
203, 66
               

               
Conread position:
               
327-560
               

               
Cow position:
               
chr1:82929140-82928910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
60, 99
               

               
Conread position:
               
329-506
               

               
Cow position:
               
chr1:101860803-101860633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
329-691
               

               
Cow position:
               
chr1:76703022-76702662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 120
               

               
Conread position:
               
332-761
               

               
Cow position:
               
chr1:77110798-77110378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
14, 124
               

               
Conread position:
               
337-820
               

               
Cow position:
               
chr1:67002439-67002928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 142
               

               
Conread position:
               
340-818
               

               
Cow position:
               
chr1:40748954-40748493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
26, 132
               

               
Conread position:
               
340-820
               

               
Cow position:
               
chr1:50941998-50941521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
42, 93
               

               
Conread position:
               
349-820
               

               
Cow position:
               
chr1:87969618-87970083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 70
               

               
Conread position:
               
350-820
               

               
Cow position:
               
chr1:30299666-30300129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
38, 65
               

               
Conread position:
               
358-746
               

               
Cow position:
               
chr1:51978490-51978860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
32, 69
               

               
Conread position:
               
360-714
               

               
Cow position:
               
chr1:5319694-5320042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
218, 59
               

               
Conread position:
               
360-820
               

               
Cow position:
               
chr1:9379211-9378743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 97
               

               
Conread position:
               
360-820
               

               
Cow position:
               
chr1:30074179-30074645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 96
               

               
Conread position:
               
360-820
               

               
Cow position:
               
chr1:59207771-59207304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 69
               

               
Conread position:
               
360-820
               

               
Cow position:
               
chr1:71561441-71560970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 119
               

               
Conread position:
               
360-820
               

               
Cow position:
               
chr1:72992808-72993262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 50
               

               
Conread position:
               
360-820
               

               
Cow position:
               
chr1:74285369-74284904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 89
               

               
Conread position:
               
361-541
               

               
Cow position:
               
chr1:29607970-29607793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
92, 109
               

               
Conread position:
               
361-818
               

               
Cow position:
               
chr1:34912279-34912746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 111
               

               
Conread position:
               
362-689
               

               
Cow position:
               
chr1:67316124-67316432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
220, 51
               

               
Conread position:
               
369-820
               

               
Cow position:
               
chr1:77462976-77463416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 37
               

               
Conread position:
               
373-820
               

               
Cow position:
               
chr1:10723899-10724354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 106
               

               
Conread position:
               
373-820
               

               
Cow position:
               
chr1:57365020-57364568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 12
               

               
Conread position:
               
373-829
               

               
Cow position:
               
chr1:81862662-81862199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 97
               

               
Conread position:
               
374-794
               

               
Cow position:
               
chr1:84223665-84224077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
14, 32
               

               
Conread position:
               
375-802
               

               
Cow position:
               
chr1:59648651-59649087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
21, 311
               

               
Conread position:
               
376-560
               

               
Cow position:
               
chr1:45018313-45018135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
13, 81
               

               
Conread position:
               
376-801
               

               
Cow position:
               
chr1:67326607-67326202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
199, 26
               

               
Conread position:
               
376-820
               

               
Cow position:
               
chr1:18026434-18025970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
38, 27
               

               
Conread position:
               
376-820
               

               
Cow position:
               
chr1:67909876-67910322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 72
               

               
Conread position:
               
378-527
               

               
Cow position:
               
chr1:64697034-64697180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
12, 92
               

               
Conread position:
               
378-691
               

               
Cow position:
               
chr1:21998091-21997770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 244
               

               
Conread position:
               
378-767
               

               
Cow position:
               
chr1:22345331-22345720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 70
               

               
Conread position:
               
378-820
               

               
Cow position:
               
chr1:39882415-39882856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
115, 17
               

               
Conread position:
               
385-727
               

               
Cow position:
               
chr1:76095727-76095385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
177, 10
               

               
Conread position:
               
385-821
               

               
Cow position:
               
chr1:40643567-40643995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
158, 71
               

               
Conread position:
               
386-744
               

               
Cow position:
               
chr1:92871257-92871626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
65, 9
               

               
Conread position:
               
388-580
               

               
Cow position:
               
chr1:91079553-91079366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
165, 60
               

               
Conread position:
               
388-729
               

               
Cow position:
               
chr1:79136289-79136617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
286, 13
               

               
Conread position:
               
388-805
               

               
Cow position:
               
chr1:72945081-72945493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 81
               

               
Conread position:
               
389-820
               

               
Cow position:
               
chr1:50210505-50210067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 86
               

               
Conread position:
               
389-821
               

               
Cow position:
               
chr1:23091992-23092408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
289, 36
               

               
Conread position:
               
393-820
               

               
Cow position:
               
chr1:29412839-29412428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
283, 21
               

               
Conread position:
               
395-807
               

               
Cow position:
               
chr1:43570068-43569669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
178, 60
               

               
Conread position:
               
396-698
               

               
Cow position:
               
chr1:29976229-29975947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
80, 25
               

               
Conread position:
               
398-820
               

               
Cow position:
               
chr1:82565459-82565888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 77
               

               
Conread position:
               
401-767
               

               
Cow position:
               
chr1:54407256-54406885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
27, 54
               

               
Conread position:
               
401-819
               

               
Cow position:
               
chr1:71740787-71740369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
150, 26
               

               
Conread position:
               
403-781
               

               
Cow position:
               
chr1:90607527-90607143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 72
               

               
Conread position:
               
406-820
               

               
Cow position:
               
chr1:61541650-61542050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 38
               

               
Conread position:
               
409-781
               

               
Cow position:
               
chr1:50248342-50247973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
141, 67
               

               
Conread position:
               
414-820
               

               
Cow position:
               
chr1:34507789-34508187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
137, 38
               

               
Conread position:
               
414-820
               

               
Cow position:
               
chr1:57746032-57745621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 11
               

               
Conread position:
               
426-550
               

               
Cow position:
               
chr1:84152280-84152398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
427-819
               

               
Cow position:
               
chr1:48248284-48248677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 92
               

               
Conread position:
               
428-828
               

               
Cow position:
               
chr1:89769161-89768759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 23
               

               
Conread position:
               
434-820
               

               
Cow position:
               
chr1:88268702-88268323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 34
               

               
Conread position:
               
441-821
               

               
Cow position:
               
chr1:82071108-82071493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
18, 47
               

               
Conread position:
               
448-793
               

               
Cow position:
               
chr1:64481223-64480902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
96, 21
               

               
Conread position:
               
456-817
               

               
Cow position:
               
chr1:50988884-50988525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
29, 78
               

               
Conread position:
               
458-796
               

               
Cow position:
               
chr1:29226290-29226620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
218, 9
               

               
Conread position:
               
458-806
               

               
Cow position:
               
chr1:86508503-86508134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
88, 17
               

               
Conread position:
               
459-819
               

               
Cow position:
               
chr1:31812446-31812792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
53, 16
               

               
Conread position:
               
459-820
               

               
Cow position:
               
chr1:33350987-33351344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 10
               

               
Conread position:
               
489-820
               

               
Cow position:
               
chr1:82367209-82367535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
65, 139
               

               
Conread position:
               
494-775
               

               
Cow position:
               
chr1:11859319-11859033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
65, 31
               

               
Conread position:
               
498-820
               

               
Cow position:
               
chr1:1828862-1828535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
61, 18
               

               
Conread position:
               
502-787
               

               
Cow position:
               
chr1:76741784-76741493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
52, 33
               

               
Conread position:
               
503-820
               

               
Cow position:
               
chr1:72137441-72137762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 22
               

               
Conread position:
               
505-820
               

               
Cow position:
               
chr1:22725047-22724738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
26, 50
               

               
Conread position:
               
509-818
               

               
Cow position:
               
chr1:98786392-98786710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
22, 118
               

               
Conread position:
               
518-820
               

               
Cow position:
               
chr1:21592052-21592363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
34, 118
               

               
Conread position:
               
532-820
               

               
Cow position:
               
chr1:39107061-39107353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
78, 46
               

               
Conread position:
               
540-820
               

               
Cow position:
               
chr1:27112940-27112661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 88
               

               
Conread position:
               
546-820
               

               
Cow position:
               
chr1:57569327-57569605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
22, 58
               

               
Conread position:
               
546-828
               

               
Cow position:
               
chr1:51482309-51482027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
15, 156
               

               
Conread position:
               
547-820
               

               
Cow position:
               
chr1:18964866-18964593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
131, 17
               

               
Conread position:
               
547-820
               

               
Cow position:
               
chr1:25053797-25054062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
129, 17
               

               
Conread position:
               
547-820
               

               
Cow position:
               
chr1:81777949-81778221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
129, 17
               

               
Conread position:
               
547-821
               

               
Cow position:
               
chr1:26813570-26813297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
57, 20
               

               
Conread position:
               
549-814
               

               
Cow position:
               
chr1:40436319-40436053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
56, 27
               

               
Conread position:
               
554-828
               

               
Cow position:
               
chr1:72112515-72112789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
14, 38
               

               
Conread position:
               
556-820
               

               
Cow position:
               
chr1:29607552-29607289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
122, 13
               

               
Conread position:
               
564-820
               

               
Cow position:
               
chr1:73020410-73020160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
89, 9
               

               
Conread position:
               
571-821
               

               
Cow position:
               
chr1:85824013-85824263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
106, 43
               

               
Conread position:
               
577-742
               

               
Cow position:
               
chr1:57663516-57663680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
65, 24
               

               
Conread position:
               
578-760
               

               
Cow position:
               
chr1:65021271-65021089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
100, 50
               

               
Conread position:
               
579-731
               

               
Cow position:
               
chr1:30063910-30064064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
593-820
               

               
Cow position:
               
chr1:40966869-40966642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
85, 32
               

               
Conread position:
               
596-818
               

               
Cow position:
               
chr1:38386884-38386666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
81, 31
               

               
Conread position:
               
606-821
               

               
Cow position:
               
chr1:57972039-57971818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
72, 193
               

               
Conread position:
               
610-820
               

               
Cow position:
               
chr1:62921124-62921334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
67, 15
               

               
Conread position:
               
611-818
               

               
Cow position:
               
chr1:33389846-33390055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
63, 14
               

               
Conread position:
               
619-808
               

               
Cow position:
               
chr1:22844056-22844239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
619-828
               

               
Cow position:
               
chr1:102550078-102550278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
59, 6
               

               
Conread position:
               
624-820
               

               
Cow position:
               
chr1:44972911-44973105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
54, 26
               

               
Conread position:
               
624-820
               

               
Cow position:
               
chr1:45003778-45003969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
54, 109
               

               
Conread position:
               
624-820
               

               
Cow position:
               
chr1:61729676-61729483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
153, 61
               

               
Conread position:
               
624-821
               

               
Cow position:
               
chr1:30520364-30520565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
15, 42
               

               
Conread position:
               
625-817
               

               
Cow position:
               
chr1:41781474-41781287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
53, 37
               

               
Conread position:
               
625-820
               

               
Cow position:
               
chr1:82911250-82911054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
628-820
               

               
Cow position:
               
chr1:58338422-58338615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
48, 171
               

               
Conread position:
               
631-820
               

               
Cow position:
               
chr1:70418543-70418354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
47, 11
               

               
Conread position:
               
641-820
               

               
Cow position:
               
chr1:57696357-57696177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
136, 39
               

               
Conread position:
               
641-820
               

               
Cow position:
               
chr1:89482545-89482723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
37, 75
               

               
Conread position:
               
644-828
               

               
Cow position:
               
chr1:98617190-98617006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
34, 7
               

               
Conread position:
               
648-820
               

               
Cow position:
               
chr1:101012582-101012409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
674-820
               

               
Cow position:
               
chr1:5355307-5355161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
197-535
               

               
Cow position:
               
chr10:31539134-31539469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
236, 273
               

               
Conread position:
               
225-528
               

               
Cow position:
               
chr10:1665346-1665038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
73, 17
               

               
Conread position:
               
225-591
               

               
Cow position:
               
chr10:11684446-11684060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
73, 20
               

               
Conread position:
               
225-731
               

               
Cow position:
               
chr10:39180984-39181504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 20
               

               
Conread position:
               
225-818
               

               
Cow position:
               
chr10:39815213-39814604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
618
               

               
Alignm identity:
               
435
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 20
               

               
Conread position:
               
225-820
               

               
Cow position:
               
chr10:7897297-7896684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
620
               

               
Alignm identity:
               
441
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 20
               

               
Conread position:
               
225-820
               

               
Cow position:
               
chr10:28256228-28255611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
626
               

               
Alignm identity:
               
436
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 20
               

               
Conread position:
               
225-820
               

               
Cow position:
               
chr10:41568286-41568898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
621
               

               
Alignm identity:
               
435
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 20
               

               
Conread position:
               
225-820
               

               
Cow position:
               
chr10:41878108-41878721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
621
               

               
Alignm identity:
               
445
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 20
               

               
Conread position:
               
225-820
               

               
Cow position:
               
chr10:47908119-47908724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
624
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 20
               

               
Conread position:
               
225-820
               

               
Cow position:
               
chr10:55094456-55095062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
617
               

               
Alignm identity:
               
428
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 20
               

               
Conread position:
               
225-820
               

               
Cow position:
               
chr10:57556150-57555538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
620
               

               
Alignm identity:
               
444
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 20
               

               
Conread position:
               
225-821
               

               
Cow position:
               
chr10:19495103-19494489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
621
               

               
Alignm identity:
               
437
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 20
               

               
Conread position:
               
225-821
               

               
Cow position:
               
chr10:21739561-21738958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
622
               

               
Alignm identity:
               
432
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 20
               

               
Conread position:
               
227-630
               

               
Cow position:
               
chr10:50135760-50136170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
72, 18
               

               
Conread position:
               
227-828
               

               
Cow position:
               
chr10:29011465-29010865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
623
               

               
Alignm identity:
               
433
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 28
               

               
Conread position:
               
228-818
               

               
Cow position:
               
chr10:29722856-29722257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
617
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 23
               

               
Conread position:
               
229-766
               

               
Cow position:
               
chr10:7478114-7477585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
554
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
53, 25
               

               
Conread position:
               
229-816
               

               
Cow position:
               
chr10:54931006-54930422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 32
               

               
Conread position:
               
230-719
               

               
Cow position:
               
chr10:53321204-53320707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 15
               

               
Conread position:
               
230-808
               

               
Cow position:
               
chr10:19544200-19543617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 252
               

               
Conread position:
               
230-820
               

               
Cow position:
               
chr10:30684303-30683694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
616
               

               
Alignm identity:
               
432
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 249
               

               
Conread position:
               
231-471
               

               
Cow position:
               
chr10:16926725-16926976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
67, 14
               

               
Conread position:
               
231-547
               

               
Cow position:
               
chr10:51774014-51773702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
68, 14
               

               
Conread position:
               
231-589
               

               
Cow position:
               
chr10:126480-126844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
66, 14
               

               
Conread position:
               
231-634
               

               
Cow position:
               
chr10:28642728-28643150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 14
               

               
Conread position:
               
232-646
               

               
Cow position:
               
chr10:32701920-32702345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
65, 13
               

               
Conread position:
               
232-698
               

               
Cow position:
               
chr10:55285153-55285616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
68, 234
               

               
Conread position:
               
232-788
               

               
Cow position:
               
chr10:10583309-10583886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
585
               

               
Alignm identity:
               
403
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 13
               

               
Conread position:
               
232-819
               

               
Cow position:
               
chr10:16477953-16478535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 89
               

               
Conread position:
               
232-819
               

               
Cow position:
               
chr10:21488158-21488752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
604
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 13
               

               
Conread position:
               
232-820
               

               
Cow position:
               
chr10:1378698-1379293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
607
               

               
Alignm identity:
               
431
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 13
               

               
Conread position:
               
232-820
               

               
Cow position:
               
chr10:2119821-2119214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
619
               

               
Alignm identity:
               
430
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 13
               

               
Conread position:
               
232-820
               

               
Cow position:
               
chr10:14334653-14334049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
622
               

               
Alignm identity:
               
430
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 13
               

               
Conread position:
               
232-820
               

               
Cow position:
               
chr10:14805038-14805640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
613
               

               
Alignm identity:
               
430
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 13
               

               
Conread position:
               
232-820
               

               
Cow position:
               
chr10:22102429-22103029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
610
               

               
Alignm identity:
               
431
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 13
               

               
Conread position:
               
232-820
               

               
Cow position:
               
chr10:29845452-29844861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
606
               

               
Alignm identity:
               
427
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 13
               

               
Conread position:
               
232-820
               

               
Cow position:
               
chr10:38344164-38343569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
609
               

               
Alignm identity:
               
428
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 13
               

               
Conread position:
               
232-820
               

               
Cow position:
               
chr10:39040102-39039519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
608
               

               
Alignm identity:
               
428
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 13
               

               
Conread position:
               
232-820
               

               
Cow position:
               
chr10:57988799-57988198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
611
               

               
Alignm identity:
               
432
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 13
               

               
Conread position:
               
232-820
               

               
Cow position:
               
chr10:62407585-62406985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
608
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 13
               

               
Conread position:
               
232-822
               

               
Cow position:
               
chr10:7280910-7280306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
616
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 13
               

               
Conread position:
               
233-820
               

               
Cow position:
               
chr10:58812559-58811960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
614
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 177
               

               
Conread position:
               
234-820
               

               
Cow position:
               
chr10:14853053-14853648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
607
               

               
Alignm identity:
               
445
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 213
               

               
Conread position:
               
236-828
               

               
Cow position:
               
chr10:29109770-29109180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
609
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 83
               

               
Conread position:
               
238-465
               

               
Cow position:
               
chr10:8326130-8325917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
30, 60
               

               
Conread position:
               
241-820
               

               
Cow position:
               
chr10:42641792-42642391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
623
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 85
               

               
Conread position:
               
242-566
               

               
Cow position:
               
chr10:42111619-42111952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
25, 81
               

               
Conread position:
               
242-695
               

               
Cow position:
               
chr10:57502011-57502473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
58, 235
               

               
Conread position:
               
242-794
               

               
Cow position:
               
chr10:28946686-28947234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 81
               

               
Conread position:
               
242-800
               

               
Cow position:
               
chr10:58096824-58096275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
571
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 83
               

               
Conread position:
               
242-805
               

               
Cow position:
               
chr10:40418372-40418912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
579
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
18, 155
               

               
Conread position:
               
242-818
               

               
Cow position:
               
chr10:40641164-40641738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
587
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
186, 44
               

               
Conread position:
               
242-818
               

               
Cow position:
               
chr10:51782209-51781646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
585
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 254
               

               
Conread position:
               
242-819
               

               
Cow position:
               
chr10:44708410-44707821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
602
               

               
Alignm identity:
               
426
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 244
               

               
Conread position:
               
242-820
               

               
Cow position:
               
chr10:20369873-20369316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
590
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 107
               

               
Conread position:
               
245-628
               

               
Cow position:
               
chr10:21399474-21399079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
53, 101
               

               
Conread position:
               
245-645
               

               
Cow position:
               
chr10:14842986-14843379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
54, 17
               

               
Conread position:
               
245-663
               

               
Cow position:
               
chr10:40398203-40398627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
55, 77
               

               
Conread position:
               
245-745
               

               
Cow position:
               
chr10:24311159-24310668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 158
               

               
Conread position:
               
245-781
               

               
Cow position:
               
chr10:21078838-21079370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
552
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 26
               

               
Conread position:
               
245-818
               

               
Cow position:
               
chr10:39878224-39877626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
613
               

               
Alignm identity:
               
467
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 27
               

               
Conread position:
               
245-828
               

               
Cow position:
               
chr10:38722327-38722905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
614
               

               
Alignm identity:
               
445
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 129
               

               
Conread position:
               
248-589
               

               
Cow position:
               
chr10:19512788-19513132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
51, 228
               

               
Conread position:
               
248-619
               

               
Cow position:
               
chr10:32429938-32430310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 77
               

               
Conread position:
               
248-635
               

               
Cow position:
               
chr10:20375625-20375234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
39, 198
               

               
Conread position:
               
248-728
               

               
Cow position:
               
chr10:20382802-20382330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
78, 53
               

               
Conread position:
               
248-745
               

               
Cow position:
               
chr10:24976567-24976086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 106
               

               
Conread position:
               
248-820
               

               
Cow position:
               
chr10:19840890-19841476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
594
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 74
               

               
Conread position:
               
251-820
               

               
Cow position:
               
chr10:31524979-31525525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
579
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
48, 71
               

               
Conread position:
               
251-820
               

               
Cow position:
               
chr10:39778905-39778335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
581
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 71
               

               
Conread position:
               
252-794
               

               
Cow position:
               
chr10:48397887-48397343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
561
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
48, 186
               

               
Conread position:
               
252-828
               

               
Cow position:
               
chr10:29631587-29630990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
608
               

               
Alignm identity:
               
424
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 70
               

               
Conread position:
               
253-626
               

               
Cow position:
               
chr10:36469237-36468862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 7
               

               
Conread position:
               
253-731
               

               
Cow position:
               
chr10:60361110-60361590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
42, 213
               

               
Conread position:
               
253-749
               

               
Cow position:
               
chr10:32558561-32559072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 6
               

               
Conread position:
               
253-820
               

               
Cow position:
               
chr10:22677180-22677732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
577
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
51, 99
               

               
Conread position:
               
253-820
               

               
Cow position:
               
chr10:41158659-41159210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
574
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 69
               

               
Conread position:
               
256-820
               

               
Cow position:
               
chr10:37771101-37771681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
591
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 211
               

               
Conread position:
               
256-821
               

               
Cow position:
               
chr10:41387732-41387187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
568
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 57
               

               
Conread position:
               
258-792
               

               
Cow position:
               
chr10:11821959-11822517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
439
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 227
               

               
Conread position:
               
261-555
               

               
Cow position:
               
chr10:40151032-40150747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
39, 64
               

               
Conread position:
               
261-637
               

               
Cow position:
               
chr10:28530229-28529873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
43, 68
               

               
Conread position:
               
262-561
               

               
Cow position:
               
chr10:64146150-64146453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
35, 64
               

               
Conread position:
               
262-792
               

               
Cow position:
               
chr10:22575913-22575392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 120
               

               
Conread position:
               
262-812
               

               
Cow position:
               
chr10:37307809-37308361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
573
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
38, 112
               

               
Conread position:
               
263-641
               

               
Cow position:
               
chr10:20939894-20939501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
19, 12
               

               
Conread position:
               
263-820
               

               
Cow position:
               
chr10:29101495-29100929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
577
               

               
Alignm identity:
               
428
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 61
               

               
Conread position:
               
264-808
               

               
Cow position:
               
chr10:38849513-38850052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
560
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 58
               

               
Conread position:
               
269-820
               

               
Cow position:
               
chr10:33870513-33871082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
577
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 53
               

               
Conread position:
               
271-819
               

               
Cow position:
               
chr10:24784874-24784335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
570
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
26, 78
               

               
Conread position:
               
291-822
               

               
Cow position:
               
chr10:22583755-22583254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
540
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 30
               

               
Conread position:
               
297-557
               

               
Cow position:
               
chr10:6538648-6538917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
33, 184
               

               
Conread position:
               
297-589
               

               
Cow position:
               
chr10:14862931-14863215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
30, 20
               

               
Conread position:
               
297-740
               

               
Cow position:
               
chr10:20118356-20117918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
22, 94
               

               
Conread position:
               
323-819
               

               
Cow position:
               
chr10:46192440-46192941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
235, 71
               

               
Conread position:
               
324-807
               

               
Cow position:
               
chr10:44102430-44102917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
17, 113
               

               
Conread position:
               
325-805
               

               
Cow position:
               
chr10:68160346-68159857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 149
               

               
Conread position:
               
325-820
               

               
Cow position:
               
chr10:25652139-25651632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 155
               

               
Conread position:
               
325-820
               

               
Cow position:
               
chr10:41774316-41773820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 151
               

               
Conread position:
               
331-809
               

               
Cow position:
               
chr10:47787978-47788451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 143
               

               
Conread position:
               
340-745
               

               
Cow position:
               
chr10:40462388-40462795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
18, 122
               

               
Conread position:
               
340-820
               

               
Cow position:
               
chr10:19721780-19721304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 100
               

               
Conread position:
               
360-813
               

               
Cow position:
               
chr10:6662309-6661871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
30, 71
               

               
Conread position:
               
360-818
               

               
Cow position:
               
chr10:53485901-53485447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 113
               

               
Conread position:
               
360-820
               

               
Cow position:
               
chr10:10172060-10172532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 121
               

               
Conread position:
               
361-819
               

               
Cow position:
               
chr10:16926995-16927466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
175, 5
               

               
Conread position:
               
364-820
               

               
Cow position:
               
chr10:19706302-19705831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 123
               

               
Conread position:
               
372-749
               

               
Cow position:
               
chr10:23138616-23138980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
16, 98
               

               
Conread position:
               
373-727
               

               
Cow position:
               
chr10:35225102-35224751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
71, 28
               

               
Conread position:
               
377-549
               

               
Cow position:
               
chr10:34908527-34908695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
103, 24
               

               
Conread position:
               
377-746
               

               
Cow position:
               
chr10:486979-486629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
91, 8
               

               
Conread position:
               
377-820
               

               
Cow position:
               
chr10:8291394-8291840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 98
               

               
Conread position:
               
378-780
               

               
Cow position:
               
chr10:46196421-46196798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
172, 20
               

               
Conread position:
               
378-820
               

               
Cow position:
               
chr10:32317130-32317569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 92
               

               
Conread position:
               
382-765
               

               
Cow position:
               
chr10:53826996-53827381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
87, 37
               

               
Conread position:
               
387-818
               

               
Cow position:
               
chr10:22346319-22346754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 23
               

               
Conread position:
               
389-799
               

               
Cow position:
               
chr10:20537733-20538126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
49, 20
               

               
Conread position:
               
389-819
               

               
Cow position:
               
chr10:56394661-56394240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
183, 11
               

               
Conread position:
               
389-820
               

               
Cow position:
               
chr10:64221064-64220655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 44
               

               
Conread position:
               
390-821
               

               
Cow position:
               
chr10:38450903-38451327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
98, 27
               

               
Conread position:
               
391-761
               

               
Cow position:
               
chr10:1665204-1664836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
107, 18
               

               
Conread position:
               
395-804
               

               
Cow position:
               
chr10:58376932-58376533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
168, 48
               

               
Conread position:
               
395-821
               

               
Cow position:
               
chr10:16819889-16819450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
118, 22
               

               
Conread position:
               
410-820
               

               
Cow position:
               
chr10:39439535-39439949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 11
               

               
Conread position:
               
410-821
               

               
Cow position:
               
chr10:41634800-41635189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
270, 33
               

               
Conread position:
               
414-808
               

               
Cow position:
               
chr10:22909083-22908680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
76, 41
               

               
Conread position:
               
422-828
               

               
Cow position:
               
chr10:25339499-25339901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 9
               

               
Conread position:
               
469-759
               

               
Cow position:
               
chr10:25250551-25250853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
21, 168
               

               
Conread position:
               
484-820
               

               
Cow position:
               
chr10:38544440-38544102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
73, 149
               

               
Conread position:
               
505-700
               

               
Cow position:
               
chr10:5256594-5256388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
47, 130
               

               
Conread position:
               
516-820
               

               
Cow position:
               
chr10:46183934-46184242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
19, 44
               

               
Conread position:
               
521-820
               

               
Cow position:
               
chr10:8325615-8325316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
77, 33
               

               
Conread position:
               
532-820
               

               
Cow position:
               
chr10:23409745-23409453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
546-820
               

               
Cow position:
               
chr10:31539655-31539926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
130, 79
               

               
Conread position:
               
547-788
               

               
Cow position:
               
chr10:39444755-39444514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
129, 22
               

               
Conread position:
               
547-815
               

               
Cow position:
               
chr10:38865611-38865881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
73, 22
               

               
Conread position:
               
547-820
               

               
Cow position:
               
chr10:32702281-32702553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
131, 17
               

               
Conread position:
               
564-820
               

               
Cow position:
               
chr10:19143075-19142819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
112, 62
               

               
Conread position:
               
565-820
               

               
Cow position:
               
chr10:22644544-22644795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
113, 60
               

               
Conread position:
               
565-820
               

               
Cow position:
               
chr10:41151192-41150938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
113, 60
               

               
Conread position:
               
565-827
               

               
Cow position:
               
chr10:58598055-58598316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
88, 63
               

               
Conread position:
               
571-820
               

               
Cow position:
               
chr10:13218475-13218229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
19, 51
               

               
Conread position:
               
571-820
               

               
Cow position:
               
chr10:40150637-40150401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
28, 52
               

               
Conread position:
               
580-820
               

               
Cow position:
               
chr10:22343034-22343261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
98, 45
               

               
Conread position:
               
594-818
               

               
Cow position:
               
chr10:32828442-32828667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
15, 33
               

               
Conread position:
               
598-820
               

               
Cow position:
               
chr10:29732316-29732536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
80, 27
               

               
Conread position:
               
611-820
               

               
Cow position:
               
chr10:6258904-6258692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
67, 36
               

               
Conread position:
               
611-822
               

               
Cow position:
               
chr10:57525741-57525536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
9, 13
               

               
Conread position:
               
612-818
               

               
Cow position:
               
chr10:24124469-24124264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
66, 13
               

               
Conread position:
               
624-788
               

               
Cow position:
               
chr10:20374965-20374800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
625-819
               

               
Cow position:
               
chr10:2133627-2133434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
50, 5
               

               
Conread position:
               
626-820
               

               
Cow position:
               
chr10:34666142-34665943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
633-812
               

               
Cow position:
               
chr10:6535328-6535508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
641-820
               

               
Cow position:
               
chr10:6556150-6556329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
37, 174
               

               
Conread position:
               
648-820
               

               
Cow position:
               
chr10:14844382-14844555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
32, 86
               

               
Conread position:
               
677-821
               

               
Cow position:
               
chr10:3521163-3521020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
86, 96
               

               
Conread position:
               
224-788
               

               
Cow position:
               
chr11:71330421-71331004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
591
               

               
Alignm identity:
               
404
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 21
               

               
Conread position:
               
225-546
               

               
Cow position:
               
chr11:9601488-9601178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
73, 20
               

               
Conread position:
               
225-692
               

               
Cow position:
               
chr11:29613168-29612684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 20
               

               
Conread position:
               
225-820
               

               
Cow position:
               
chr11:9733852-9733246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
615
               

               
Alignm identity:
               
424
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 20
               

               
Conread position:
               
225-820
               

               
Cow position:
               
chr11:17106857-17106245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
619
               

               
Alignm identity:
               
439
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 20
               

               
Conread position:
               
225-820
               

               
Cow position:
               
chr11:17546988-17547594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
614
               

               
Alignm identity:
               
443
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 20
               

               
Conread position:
               
225-820
               

               
Cow position:
               
chr11:19063246-19062640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
620
               

               
Alignm identity:
               
440
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 20
               

               
Conread position:
               
225-820
               

               
Cow position:
               
chr11:20733410-20732797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
625
               

               
Alignm identity:
               
444
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 20
               

               
Conread position:
               
225-820
               

               
Cow position:
               
chr11:28228940-28228331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
620
               

               
Alignm identity:
               
439
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 20
               

               
Conread position:
               
225-820
               

               
Cow position:
               
chr11:32452653-32453268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
622
               

               
Alignm identity:
               
434
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 20
               

               
Conread position:
               
225-820
               

               
Cow position:
               
chr11:44518039-44517429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
619
               

               
Alignm identity:
               
441
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 20
               

               
Conread position:
               
225-820
               

               
Cow position:
               
chr11:57627227-57626616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
619
               

               
Alignm identity:
               
427
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 20
               

               
Conread position:
               
225-820
               

               
Cow position:
               
chr11:61400252-61399668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
606
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 20
               

               
Conread position:
               
225-820
               

               
Cow position:
               
chr11:66729921-66730523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
616
               

               
Alignm identity:
               
443
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 20
               

               
Conread position:
               
227-528
               

               
Cow position:
               
chr11:74424424-74424729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
73, 18
               

               
Conread position:
               
227-820
               

               
Cow position:
               
chr11:4026782-4026175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
615
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 18
               

               
Conread position:
               
228-820
               

               
Cow position:
               
chr11:1489323-1488735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
606
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 91
               

               
Conread position:
               
228-820
               

               
Cow position:
               
chr11:19101659-19101053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
616
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 20
               

               
Conread position:
               
228-820
               

               
Cow position:
               
chr11:26548353-26548965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
620
               

               
Alignm identity:
               
431
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 257
               

               
Conread position:
               
228-820
               

               
Cow position:
               
chr11:53286339-53285736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
618
               

               
Alignm identity:
               
430
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 26
               

               
Conread position:
               
228-820
               

               
Cow position:
               
chr11:67451322-67451929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
615
               

               
Alignm identity:
               
441
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 93
               

               
Conread position:
               
230-522
               

               
Cow position:
               
chr11:50042304-50042020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
38, 15
               

               
Conread position:
               
230-820
               

               
Cow position:
               
chr11:9156316-9155721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
610
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 15
               

               
Conread position:
               
231-820
               

               
Cow position:
               
chr11:26070216-26069609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
618
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 16
               

               
Conread position:
               
231-820
               

               
Cow position:
               
chr11:35264708-35265292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
605
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
61, 17
               

               
Conread position:
               
231-820
               

               
Cow position:
               
chr11:38834602-38834011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
612
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 29
               

               
Conread position:
               
231-820
               

               
Cow position:
               
chr11:39804570-39805171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
615
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 20
               

               
Conread position:
               
231-820
               

               
Cow position:
               
chr11:44582502-44581906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
608
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 14
               

               
Conread position:
               
232-555
               

               
Cow position:
               
chr11:26564258-26563938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
66, 10
               

               
Conread position:
               
232-590
               

               
Cow position:
               
chr11:44252630-44252998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
68, 13
               

               
Conread position:
               
232-604
               

               
Cow position:
               
chr11:4269569-4269180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 13
               

               
Conread position:
               
232-809
               

               
Cow position:
               
chr11:10848283-10848876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
602
               

               
Alignm identity:
               
427
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 13
               

               
Conread position:
               
232-818
               

               
Cow position:
               
chr11:31926997-31927590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
609
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
63, 13
               

               
Conread position:
               
232-820
               

               
Cow position:
               
chr11:12357581-12356965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
623
               

               
Alignm identity:
               
424
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 13
               

               
Conread position:
               
232-820
               

               
Cow position:
               
chr11:26124094-26123482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
624
               

               
Alignm identity:
               
434
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 13
               

               
Conread position:
               
232-820
               

               
Cow position:
               
chr11:30253068-30253660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
612
               

               
Alignm identity:
               
427
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 13
               

               
Conread position:
               
232-820
               

               
Cow position:
               
chr11:40775164-40774591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
604
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 13
               

               
Conread position:
               
232-820
               

               
Cow position:
               
chr11:41169861-41169256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
614
               

               
Alignm identity:
               
433
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 13
               

               
Conread position:
               
232-820
               

               
Cow position:
               
chr11:43513798-43513192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
617
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 13
               

               
Conread position:
               
232-820
               

               
Cow position:
               
chr11:50026916-50026311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
616
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 27
               

               
Conread position:
               
232-820
               

               
Cow position:
               
chr11:52420235-52420828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
607
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 13
               

               
Conread position:
               
232-820
               

               
Cow position:
               
chr11:53431217-53430596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
625
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 13
               

               
Conread position:
               
232-820
               

               
Cow position:
               
chr11:63654501-63653896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
612
               

               
Alignm identity:
               
435
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 13
               

               
Conread position:
               
233-672
               

               
Cow position:
               
chr11:45921776-45921321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 26
               

               
Conread position:
               
233-788
               

               
Cow position:
               
chr11:11988965-11989534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
577
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 253
               

               
Conread position:
               
236-820
               

               
Cow position:
               
chr11:42311603-42311000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
616
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 9
               

               
Conread position:
               
237-822
               

               
Cow position:
               
chr11:35254418-35253862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
61, 86
               

               
Conread position:
               
242-583
               

               
Cow position:
               
chr11:35504364-35504023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
58, 188
               

               
Conread position:
               
242-623
               

               
Cow position:
               
chr11:21899001-21898619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
31, 81
               

               
Conread position:
               
242-804
               

               
Cow position:
               
chr11:15943504-15942957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
578
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
70, 62
               

               
Conread position:
               
242-805
               

               
Cow position:
               
chr11:73134131-73134724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
601
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 80
               

               
Conread position:
               
242-820
               

               
Cow position:
               
chr11:42363591-42364152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
594
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
58, 78
               

               
Conread position:
               
242-820
               

               
Cow position:
               
chr11:47759436-47758842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
606
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 172
               

               
Conread position:
               
243-514
               

               
Cow position:
               
chr11:4056649-4056383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
89, 70
               

               
Conread position:
               
243-683
               

               
Cow position:
               
chr11:20506071-20506533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
57, 249
               

               
Conread position:
               
243-688
               

               
Cow position:
               
chr11:20511447-20511908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
57, 249
               

               
Conread position:
               
245-464
               

               
Cow position:
               
chr11:4034501-4034277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
39, 23
               

               
Conread position:
               
245-692
               

               
Cow position:
               
chr11:1495186-1494735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 143
               

               
Conread position:
               
245-753
               

               
Cow position:
               
chr11:30278438-30278958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
534
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
34, 79
               

               
Conread position:
               
245-820
               

               
Cow position:
               
chr11:85392981-85392397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 126
               

               
Conread position:
               
245-821
               

               
Cow position:
               
chr11:3493833-3494427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
600
               

               
Alignm identity:
               
426
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 241
               

               
Conread position:
               
245-821
               

               
Cow position:
               
chr11:72310189-72309602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 174
               

               
Conread position:
               
247-819
               

               
Cow position:
               
chr11:2727582-2728155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
596
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 156
               

               
Conread position:
               
248-820
               

               
Cow position:
               
chr11:23880877-23881458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
426
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 239
               

               
Conread position:
               
248-820
               

               
Cow position:
               
chr11:24394161-24394750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
427
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 205
               

               
Conread position:
               
248-820
               

               
Cow position:
               
chr11:28391817-28392402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
426
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 12
               

               
Conread position:
               
248-820
               

               
Cow position:
               
chr11:29667758-29667158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
608
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 214
               

               
Conread position:
               
248-820
               

               
Cow position:
               
chr11:67845723-67845135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
596
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 74
               

               
Conread position:
               
251-798
               

               
Cow position:
               
chr11:13065118-13064571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
566
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 67
               

               
Conread position:
               
252-820
               

               
Cow position:
               
chr11:4063022-4062476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
581
               

               
Alignm identity:
               
395
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 64
               

               
Conread position:
               
256-817
               

               
Cow position:
               
chr11:76373132-76372597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
576
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 32
               

               
Conread position:
               
256-820
               

               
Cow position:
               
chr11:58135252-58135825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
586
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 154
               

               
Conread position:
               
257-812
               

               
Cow position:
               
chr11:9204977-9204434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
571
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 14
               

               
Conread position:
               
261-633
               

               
Cow position:
               
chr11:44156389-44156013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
38, 199
               

               
Conread position:
               
262-758
               

               
Cow position:
               
chr11:21849651-21849152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
51, 165
               

               
Conread position:
               
262-784
               

               
Cow position:
               
chr11:30122981-30122452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 60
               

               
Conread position:
               
262-820
               

               
Cow position:
               
chr11:67154550-67155114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
576
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 214
               

               
Conread position:
               
262-828
               

               
Cow position:
               
chr11:75554137-75553571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
579
               

               
Alignm identity:
               
395
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 245
               

               
Conread position:
               
264-815
               

               
Cow position:
               
chr11:32685760-32686299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
570
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 73
               

               
Conread position:
               
264-818
               

               
Cow position:
               
chr11:18887716-18888254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
566
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 61
               

               
Conread position:
               
265-792
               

               
Cow position:
               
chr11:26074103-26073561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
553
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 209
               

               
Conread position:
               
268-523
               

               
Cow position:
               
chr11:10216273-10216012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
32, 184
               

               
Conread position:
               
281-574
               

               
Cow position:
               
chr11:21928305-21928015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
18, 109
               

               
Conread position:
               
281-828
               

               
Cow position:
               
chr11:63275519-63274972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 28
               
294-821UCSC Genome Browser

               
Conread position:
               

               

               
Cow position:
               
chr11:64355723-64356237 (view  custom track)
               

               
Alignm length:
               
538
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 22
               
297-567UCSC Genome Browser

               
               
               
Conread position:

               
               
               
Cow position:
chr11:21890088-21889830 (view  custom track)

               
               
               
Alignm length:
274

               
               
               
Alignm identity:
186

               
               
               
Alignm E-value:
1e-24

               
               
               
Alignm gaps (pig, cow):
45, 175
297-781UCSC Genome Browser

               
               
               
Conread position:

               
               
               
Cow position:
chr11:3856121-3856599 (view  custom track)

               
               
               
Alignm length:
491

               
               
               
Alignm identity:
346

               
               
               
Alignm E-value:
0

               
               
               
Alignm gaps (pig, cow):
185, 20

               
               
               Conread position:297-781
               
               
               Cow position:chr11:18070036-18069543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 23

               
               
               Conread position:297-820
               
               
               Cow position:chr11:87142481-87143018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:548
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 20

               
               
               Conread position:298-638
               
               
               Cow position:chr11:54216356-54216006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:250
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):44, 177

               
               
               Conread position:299-680
               
               
               Cow position:chr11:14728144-14727766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:260
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):215, 21

               
               
               Conread position:302-821
               
               
               Cow position:chr11:26784167-26784689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:532
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 157

               
               
               Conread position:321-690
               
               
               Cow position:chr11:59599626-59599992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:256
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):83, 60

               
               
               Conread position:324-561
               
               
               Cow position:chr11:31932375-31932613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):65, 97

               
               
               Conread position:324-798
               
               
               Cow position:chr11:37285533-37286007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:317
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):16, 46

               
               
               Conread position:324-820
               
               
               Cow position:chr11:23126704-23126234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:333
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):24, 91

               
               
               Conread position:324-820
               
               
               Cow position:chr11:46779917-46779424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 147

               
               
               Conread position:324-820
               
               
               Cow position:chr11:49239029-49238520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 99

               
               
               Conread position:325-646
               
               
               Cow position:chr11:54484347-54484023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:235
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):22, 149

               
               
               Conread position:326-731
               
               
               Cow position:chr11:40507168-40506772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:279
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):15, 67

               
               
               Conread position:329-688
               
               
               Cow position:chr11:25865901-25865539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:259
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):12, 26

               
               
               Conread position:330-828
               
               
               Cow position:chr11:7117357-7117856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 37

               
               
               Conread position:340-666
               
               
               Cow position:chr11:75357177-75357508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):39, 140

               
               
               Conread position:349-561
               
               
               Cow position:chr11:15535420-15535627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):22, 16

               
               
               Conread position:360-514
               
               
               Cow position:chr11:44489637-44489487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:360-633
               
               
               Cow position:chr11:28053674-28053393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):19, 118

               
               
               Conread position:360-819
               
               
               Cow position:chr11:49039408-49038945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 110

               
               
               Conread position:361-528
               
               
               Cow position:chr11:21444432-21444595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):32, 97

               
               
               Conread position:361-617
               
               
               Cow position:chr11:36763910-36764180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):7, 79

               
               
               Conread position:361-794
               
               
               Cow position:chr11:50949368-50948914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:311
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):31, 139

               
               
               Conread position:361-820
               
               
               Cow position:chr11:60033247-60032801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:309
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):26, 39

               
               
               Conread position:364-828
               
               
               Cow position:chr11:23249494-23249025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 40

               
               
               Conread position:368-766
               
               
               Cow position:chr11:21011354-21010959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:260
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):44, 17

               
               
               Conread position:373-700
               
               
               Cow position:chr11:50016023-50015708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:227
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):19, 87

               
               
               Conread position:373-820
               
               
               Cow position:chr11:3261482-3261924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 86

               
               
               Conread position:373-820
               
               
               Cow position:chr11:27657416-27657874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):188, 83

               
               
               Conread position:375-817
               
               
               Cow position:chr11:82123232-82122817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:291
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):13, 66

               
               
               Conread position:375-827
               
               
               Cow position:chr11:29231997-29231538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 20

               
               
               Conread position:376-567
               
               
               Cow position:chr11:28421106-28421288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):8, 42

               
               
               Conread position:376-712
               
               
               Cow position:chr11:9762783-9762457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):20, 92

               
               
               Conread position:376-724
               
               
               Cow position:chr11:45653645-45653295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:241
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):12, 94

               
               
               Conread position:376-818
               
               
               Cow position:chr11:27669005-27668560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 50

               
               
               Conread position:376-820
               
               
               Cow position:chr11:64372671-64373114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:287
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):172, 19

               
               
               Conread position:379-820
               
               
               Cow position:chr11:10056497-10056936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:300
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):180, 86

               
               
               Conread position:383-649
               
               
               Cow position:chr11:65681404-65681672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):152, 12

               
               
               Conread position:383-828
               
               
               Cow position:chr11:30208129-30208582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 71

               
               
               Conread position:385-688
               
               
               Cow position:chr11:51040610-51040910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:206
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):73, 66

               
               
               Conread position:385-820
               
               
               Cow position:chr11:2833323-2833725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):291, 82

               
               
               Conread position:386-820
               
               
               Cow position:chr11:35894906-35894469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 18

               
               
               Conread position:389-759
               
               
               Cow position:chr11:8839444-8839076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:245
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):117, 63

               
               
               Conread position:389-761
               
               
               Cow position:chr11:44231463-44231822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 264

               
               
               Conread position:389-820
               
               
               Cow position:chr11:31163697-31164114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:284
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):178, 51

               
               
               Conread position:395-727
               
               
               Cow position:chr11:40329982-40329640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):13, 69

               
               
               Conread position:401-635
               
               
               Cow position:chr11:32400964-32401201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):125, 67

               
               
               Conread position:408-821
               
               
               Cow position:chr11:21475143-21475558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 61

               
               
               Conread position:411-818
               
               
               Cow position:chr11:40581424-40581818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:268
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):148, 41

               
               
               Conread position:414-820
               
               
               Cow position:chr11:9224560-9224152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:290
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):12, 79

               
               
               Conread position:420-820
               
               
               Cow position:chr11:10883323-10883724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 47

               
               
               Conread position:435-804
               
               
               Cow position:chr11:9302399-9302018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:265
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):41, 102

               
               
               Conread position:440-820
               
               
               Cow position:chr11:50836618-50836231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 35

               
               
               Conread position:452-723
               
               
               Cow position:chr11:82147701-82147436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:455-820
               
               
               Cow position:chr11:63163882-63163523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:244
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):217, 24

               
               
               Conread position:456-781
               
               
               Cow position:chr11:42522214-42521891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):31, 63

               
               
               Conread position:466-820
               
               
               Cow position:chr11:17281408-17281042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:252
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):91, 169

               
               
               Conread position:471-820
               
               
               Cow position:chr11:47738461-47738111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 16

               
               
               Conread position:480-820
               
               
               Cow position:chr11:17119259-17118905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:248
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):10, 156

               
               
               Conread position:491-714
               
               
               Cow position:chr11:52808456-52808683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):84, 63

               
               
               Conread position:498-821
               
               
               Cow position:chr11:25393297-25393627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):64, 97

               
               
               Conread position:505-763
               
               
               Cow position:chr11:3226712-3226983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:209
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):54, 40

               
               
               Conread position:511-821
               
               
               Cow position:chr11:13048648-13048330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 92

               
               
               Conread position:546-821
               
               
               Cow position:chr11:37802227-37802500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):62, 69

               
               
               Conread position:547-821
               
               
               Cow position:chr11:49552990-49552715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):14, 82

               
               
               Conread position:554-821
               
               
               Cow position:chr11:31863256-31863524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):122, 18

               
               
               Conread position:558-745
               
               
               Cow position:chr11:33976900-33976715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):118, 64

               
               
               Conread position:564-788
               
               
               Cow position:chr11:41234195-41234419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:168
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):114, 61

               
               
               Conread position:564-818
               
               
               Cow position:chr11:32079607-32079353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:184
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):114, 61

               
               
               Conread position:564-820
               
               
               Cow position:chr11:11590148-11590403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:189
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):69, 61

               
               
               Conread position:564-820
               
               
               Cow position:chr11:15986432-15986679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):114, 61

               
               
               Conread position:564-820
               
               
               Cow position:chr11:86876703-86876447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:189
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):114, 61

               
               
               Conread position:565-746
               
               
               Cow position:chr11:12372655-12372474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):112, 60

               
               
               Conread position:573-820
               
               
               Cow position:chr11:63647251-63647498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):105, 52

               
               
               Conread position:593-827
               
               
               Cow position:chr11:21889308-21889075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):88, 32

               
               
               Conread position:599-732
               
               
               Cow position:chr11:81340374-81340239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:103
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:624-805
               
               
               Cow position:chr11:54483751-54483570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):54, 111

               
               
               Conread position:624-821
               
               
               Cow position:chr11:44155760-44155563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):54, 83

               
               
               Conread position:626-820
               
               
               Cow position:chr11:4268936-4268741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:630-828
               
               
               Cow position:chr11:39482575-39482767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:647-820
               
               
               Cow position:chr11:40405790-40405616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:653-820
               
               
               Cow position:chr11:44041976-44042144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:662-788
               
               
               Cow position:chr11:63976969-63977096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):16, 64

               
               
               Conread position:675-822
               
               
               Cow position:chr11:47728400-47728253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:108
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:677-819
               
               
               Cow position:chr11:3086729-3086587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:684-820
               
               
               Cow position:chr11:78672534-78672398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:689-828
               
               
               Cow position:chr11:42371118-42371257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:102
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:225-488
               
               
               Cow position:chr12:22570711-22570442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):72, 20

               
               
               Conread position:225-512
               
               
               Cow position:chr12:21387130-21386837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr12:21253500-21252862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:644
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr12:23141080-23140447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:642
               
               
               Alignm identity:408
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr12:32654659-32655274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:623
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr12:37560121-37560737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:625
               
               
               Alignm identity:438
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 20

               
               
               Conread position:227-648
               
               
               Cow position:chr12:33119272-33119714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:298
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):35, 18

               
               
               Conread position:227-692
               
               
               Cow position:chr12:20843732-20844187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:318
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):72, 18

               
               
               Conread position:227-815
               
               
               Cow position:chr12:48471763-48471168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:606
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 18

               
               
               Conread position:232-550
               
               
               Cow position:chr12:31202369-31202045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 13

               
               
               Conread position:232-639
               
               
               Cow position:chr12:25099953-25099527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-805
               
               
               Cow position:chr12:1888440-1887850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:598
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 13

               
               
               Conread position:232-819
               
               
               Cow position:chr12:20996962-20996364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:401
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr12:3362059-3362658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr12:6405522-6404915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr12:11099342-11099958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:629
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr12:27931784-27931184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:237-820
               
               
               Cow position:chr12:35345673-35346249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 212

               
               
               Conread position:242-765
               
               
               Cow position:chr12:21942868-21943411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:554
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 237

               
               
               Conread position:242-820
               
               
               Cow position:chr12:42607137-42606527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 80

               
               
               Conread position:245-637
               
               
               Cow position:chr12:600229-599836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:284
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):51, 14

               
               
               Conread position:245-820
               
               
               Cow position:chr12:8676964-8676366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:408
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 14

               
               
               Conread position:245-820
               
               
               Cow position:chr12:27854832-27854241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:415
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 241

               
               
               Conread position:248-820
               
               
               Cow position:chr12:1403627-1404221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:606
               
               
               Alignm identity:403
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 247

               
               
               Conread position:251-812
               
               
               Cow position:chr12:7863735-7863162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:592
               
               
               Alignm identity:374
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):49, 66

               
               
               Conread position:251-820
               
               
               Cow position:chr12:1776830-1776241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:595
               
               
               Alignm identity:397
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 286

               
               
               Conread position:251-820
               
               
               Cow position:chr12:42858399-42857811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:595
               
               
               Alignm identity:419
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 236

               
               
               Conread position:253-820
               
               
               Cow position:chr12:5144827-5145380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:589
               
               
               Alignm identity:391
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):47, 72

               
               
               Conread position:255-821
               
               
               Cow position:chr12:23161787-23161185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 19

               
               
               Conread position:258-730
               
               
               Cow position:chr12:17979874-17980349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 17

               
               
               Conread position:259-560
               
               
               Cow position:chr12:349548-349854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):38, 66

               
               
               Conread position:259-703
               
               
               Cow position:chr12:18465097-18465511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:310
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):23, 63

               
               
               Conread position:261-786
               
               
               Cow position:chr12:24977669-24977153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:539
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 218

               
               
               Conread position:263-677
               
               
               Cow position:chr12:1478089-1477674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:281
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):8, 89

               
               
               Conread position:281-820
               
               
               Cow position:chr12:14661182-14660626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:562
               
               
               Alignm identity:391
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 198

               
               
               Conread position:303-703
               
               
               Cow position:chr12:21199185-21199587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:274
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):27, 63

               
               
               Conread position:304-820
               
               
               Cow position:chr12:21429203-21429732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:536
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 49

               
               
               Conread position:307-781
               
               
               Cow position:chr12:21482323-21482786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:314
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):20, 10

               
               
               Conread position:316-820
               
               
               Cow position:chr12:21209869-21210387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:524
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 167

               
               
               Conread position:324-645
               
               
               Cow position:chr12:20430532-20430865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):29, 103

               
               
               Conread position:325-822
               
               
               Cow position:chr12:19870125-19870609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 92

               
               
               Conread position:326-820
               
               
               Cow position:chr12:32677755-32677277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 63

               
               
               Conread position:345-818
               
               
               Cow position:chr12:24433846-24433364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 128

               
               
               Conread position:360-723
               
               
               Cow position:chr12:34174370-34174743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 119

               
               
               Conread position:360-820
               
               
               Cow position:chr12:28005158-28005595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:316
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):213, 25

               
               
               Conread position:372-822
               
               
               Cow position:chr12:19222275-19222698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:299
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):20, 63

               
               
               Conread position:374-820
               
               
               Cow position:chr12:22204441-22203989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 30

               
               
               Conread position:385-740
               
               
               Cow position:chr12:29294556-29294220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:236
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):187, 10

               
               
               Conread position:395-560
               
               
               Cow position:chr12:20461775-20461929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:403-820
               
               
               Cow position:chr12:24994663-24994239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 72

               
               
               Conread position:420-828
               
               
               Cow position:chr12:21092392-21091995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:273
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):247, 47

               
               
               Conread position:421-820
               
               
               Cow position:chr12:8138819-8138435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 27

               
               
               Conread position:424-819
               
               
               Cow position:chr12:29445070-29445452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:264
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):117, 51

               
               
               Conread position:427-781
               
               
               Cow position:chr12:3971210-3970856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):30, 12

               
               
               Conread position:428-821
               
               
               Cow position:chr12:17967133-17967534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:269
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):33, 63

               
               
               Conread position:456-812
               
               
               Cow position:chr12:15078199-15078552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:250
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):94, 31

               
               
               Conread position:456-820
               
               
               Cow position:chr12:21428234-21427869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):24, 34

               
               
               Conread position:473-820
               
               
               Cow position:chr12:30677000-30677361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:242
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):9, 70

               
               
               Conread position:489-820
               
               
               Cow position:chr12:22568373-22568034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:242
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):41, 148

               
               
               Conread position:501-820
               
               
               Cow position:chr12:35634110-35633798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:218
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):62, 20

               
               
               Conread position:509-820
               
               
               Cow position:chr12:4634071-4633761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):49, 11

               
               
               Conread position:545-820
               
               
               Cow position:chr12:3209421-3209693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):40, 75

               
               
               Conread position:547-820
               
               
               Cow position:chr12:34174794-34175067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 17

               
               
               Conread position:555-820
               
               
               Cow position:chr12:25099016-25098752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):72, 23

               
               
               Conread position:565-820
               
               
               Cow position:chr12:20461760-20461506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:184
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):113, 7

               
               
               Conread position:565-820
               
               
               Cow position:chr12:43913307-43913562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):43, 59

               
               
               Conread position:577-828
               
               
               Cow position:chr12:30685221-30685465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):101, 46

               
               
               Conread position:588-742
               
               
               Cow position:chr12:32391331-32391483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):90, 31

               
               
               Conread position:593-799
               
               
               Cow position:chr12:20881602-20881806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):82, 32

               
               
               Conread position:598-828
               
               
               Cow position:chr12:15950305-15950076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):80, 27

               
               
               Conread position:624-820
               
               
               Cow position:chr12:39038939-39038744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):54, 102

               
               
               Conread position:625-781
               
               
               Cow position:chr12:466746-466593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:625-820
               
               
               Cow position:chr12:21310711-21310516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):53, 145

               
               
               Conread position:625-820
               
               
               Cow position:chr12:22519452-22519256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:626-766
               
               
               Cow position:chr12:11581530-11581671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:225-549
               
               
               Cow position:chr13:47229106-47228775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:238
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-550
               
               
               Cow position:chr13:17998451-17998782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-710
               
               
               Cow position:chr13:28860057-28860558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-745
               
               
               Cow position:chr13:49974558-49975094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:545
               
               
               Alignm identity:389
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-815
               
               
               Cow position:chr13:17309362-17309962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:442
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-818
               
               
               Cow position:chr13:34049636-34050208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr13:21697146-21697768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:629
               
               
               Alignm identity:445
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr13:21839300-21838703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:431
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr13:31732995-31732391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 20

               
               
               Conread position:225-821
               
               
               Cow position:chr13:32984449-32983839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 20

               
               
               Conread position:227-820
               
               
               Cow position:chr13:6667236-6666635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:608
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 18

               
               
               Conread position:227-820
               
               
               Cow position:chr13:43590226-43590814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:408
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 18

               
               
               Conread position:227-820
               
               
               Cow position:chr13:50110347-50110962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:624
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 95

               
               
               Conread position:228-558
               
               
               Cow position:chr13:5625089-5624763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:230
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):71, 19

               
               
               Conread position:228-820
               
               
               Cow position:chr13:678646-679252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:438
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 17

               
               
               Conread position:229-689
               
               
               Cow position:chr13:30239212-30239700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:331
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):19, 233

               
               
               Conread position:230-809
               
               
               Cow position:chr13:50661202-50661754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:390
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):70, 30

               
               
               Conread position:230-820
               
               
               Cow position:chr13:11797820-11797203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:624
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 15

               
               
               Conread position:231-604
               
               
               Cow position:chr13:23002107-23001724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:278
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):69, 14

               
               
               Conread position:232-589
               
               
               Cow position:chr13:15923478-15923113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-633
               
               
               Cow position:chr13:32546291-32546696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 13

               
               
               Conread position:232-749
               
               
               Cow position:chr13:4484696-4485222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:537
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 14

               
               
               Conread position:232-756
               
               
               Cow position:chr13:31555841-31555317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:547
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-781
               
               
               Cow position:chr13:34324654-34324113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:569
               
               
               Alignm identity:392
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 10

               
               
               Conread position:232-820
               
               
               Cow position:chr13:3653418-3652804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:421
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr13:4942284-4942889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr13:13325830-13326430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:438
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr13:13900769-13901369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr13:14402196-14401604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr13:31611406-31610813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr13:34041437-34040829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:444
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr13:35758184-35758784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 13

               
               
               Conread position:235-820
               
               
               Cow position:chr13:15450215-15449645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:602
               
               
               Alignm identity:402
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 12

               
               
               Conread position:237-579
               
               
               Cow position:chr13:57024599-57024936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:241
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):64, 22

               
               
               Conread position:238-526
               
               
               Cow position:chr13:8796890-8796607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):66, 7

               
               
               Conread position:241-820
               
               
               Cow position:chr13:9045674-9046252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:603
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 219

               
               
               Conread position:242-767
               
               
               Cow position:chr13:2387898-2387354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:551
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 80

               
               
               Conread position:242-805
               
               
               Cow position:chr13:56832990-56833548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:576
               
               
               Alignm identity:363
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):41, 49

               
               
               Conread position:242-820
               
               
               Cow position:chr13:5627921-5627346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:594
               
               
               Alignm identity:380
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):53, 73

               
               
               Conread position:242-821
               
               
               Cow position:chr13:29517909-29518492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:601
               
               
               Alignm identity:382
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):91, 58

               
               
               Conread position:245-699
               
               
               Cow position:chr13:21908181-21907766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:313
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):52, 35

               
               
               Conread position:245-731
               
               
               Cow position:chr13:25692589-25693089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 219

               
               
               Conread position:245-748
               
               
               Cow position:chr13:15543454-15543972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:525
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 239

               
               
               Conread position:245-813
               
               
               Cow position:chr13:61052108-61051555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:579
               
               
               Alignm identity:356
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):57, 120

               
               
               Conread position:245-820
               
               
               Cow position:chr13:31729982-31729400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:592
               
               
               Alignm identity:402
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 234

               
               
               Conread position:247-812
               
               
               Cow position:chr13:14177929-14177358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:586
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 175

               
               
               Conread position:248-820
               
               
               Cow position:chr13:22184431-22183831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 174

               
               
               Conread position:248-820
               
               
               Cow position:chr13:31507831-31508410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:592
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 74

               
               
               Conread position:252-820
               
               
               Cow position:chr13:30997311-30996752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:584
               
               
               Alignm identity:365
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):74, 52

               
               
               Conread position:252-820
               
               
               Cow position:chr13:46527385-46527947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:586
               
               
               Alignm identity:378
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):20, 39

               
               
               Conread position:258-820
               
               
               Cow position:chr13:34342831-34343410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:585
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 227

               
               
               Conread position:258-828
               
               
               Cow position:chr13:44652893-44652341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:586
               
               
               Alignm identity:386
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):13, 65

               
               
               Conread position:259-820
               
               
               Cow position:chr13:11738846-11739418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:587
               
               
               Alignm identity:400
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 60

               
               
               Conread position:259-821
               
               
               Cow position:chr13:11794131-11793573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:583
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 63

               
               
               Conread position:261-557
               
               
               Cow position:chr13:44466873-44466577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):39, 113

               
               
               Conread position:261-820
               
               
               Cow position:chr13:32924195-32923630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:579
               
               
               Alignm identity:398
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 63

               
               
               Conread position:262-551
               
               
               Cow position:chr13:28670286-28670010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):27, 64

               
               
               Conread position:262-820
               
               
               Cow position:chr13:34030551-34031100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:573
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 194

               
               
               Conread position:262-820
               
               
               Cow position:chr13:48358571-48359130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:577
               
               
               Alignm identity:393
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 60

               
               
               Conread position:264-828
               
               
               Cow position:chr13:34938383-34938950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:581
               
               
               Alignm identity:394
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 64

               
               
               Conread position:268-703
               
               
               Cow position:chr13:34909087-34908652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 106

               
               
               Conread position:274-820
               
               
               Cow position:chr13:5501053-5500495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:566
               
               
               Alignm identity:395
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 24

               
               
               Conread position:297-585
               
               
               Cow position:chr13:15519551-15519266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:213
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):33, 99

               
               
               Conread position:297-735
               
               
               Cow position:chr13:26777109-26777536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 23

               
               
               Conread position:298-820
               
               
               Cow position:chr13:6358093-6358628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:542
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 19

               
               
               Conread position:299-781
               
               
               Cow position:chr13:3482849-3482367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 178

               
               
               Conread position:306-820
               
               
               Cow position:chr13:30654418-30653922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:527
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 11

               
               
               Conread position:322-820
               
               
               Cow position:chr13:16253518-16253013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 82

               
               
               Conread position:325-752
               
               
               Cow position:chr13:11247162-11246719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:277
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):16, 172

               
               
               Conread position:336-820
               
               
               Cow position:chr13:60648795-60648303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 145

               
               
               Conread position:345-822
               
               
               Cow position:chr13:37835305-37834820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 111

               
               
               Conread position:359-820
               
               
               Cow position:chr13:43982038-43981581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 39

               
               
               Conread position:360-804
               
               
               Cow position:chr13:60468458-60468915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 120

               
               
               Conread position:360-821
               
               
               Cow position:chr13:42217648-42217177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 50

               
               
               Conread position:361-676
               
               
               Cow position:chr13:5778497-5778809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):21, 9

               
               
               Conread position:361-820
               
               
               Cow position:chr13:33335264-33334817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 27

               
               
               Conread position:361-821
               
               
               Cow position:chr13:11071219-11070788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:303
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):32, 80

               
               
               Conread position:365-740
               
               
               Cow position:chr13:50461611-50461230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:246
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):26, 55

               
               
               Conread position:367-808
               
               
               Cow position:chr13:46102362-46102783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:288
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):15, 35

               
               
               Conread position:373-766
               
               
               Cow position:chr13:21720933-21721318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:270
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):8, 77

               
               
               Conread position:374-648
               
               
               Cow position:chr13:1049262-1048998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):143, 21

               
               
               Conread position:376-820
               
               
               Cow position:chr13:42090639-42090189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 94

               
               
               Conread position:377-813
               
               
               Cow position:chr13:56023466-56023903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:273
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):58, 133

               
               
               Conread position:379-721
               
               
               Cow position:chr13:19123957-19123626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:230
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):16, 91

               
               
               Conread position:395-820
               
               
               Cow position:chr13:50193323-50192894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 5

               
               
               Conread position:396-828
               
               
               Cow position:chr13:47575160-47575604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 59

               
               
               Conread position:397-820
               
               
               Cow position:chr13:33524877-33524452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 43

               
               
               Conread position:411-791
               
               
               Cow position:chr13:20541172-20540779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 58

               
               
               Conread position:419-759
               
               
               Cow position:chr13:27599276-27598939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):139, 49

               
               
               Conread position:435-676
               
               
               Cow position:chr13:3334700-3334461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):113, 34

               
               
               Conread position:436-819
               
               
               Cow position:chr13:30278678-30279063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:263
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):38, 84

               
               
               Conread position:456-823
               
               
               Cow position:chr13:23405572-23405206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:250
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):111, 13

               
               
               Conread position:456-828
               
               
               Cow position:chr13:60423886-60424260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 13

               
               
               Conread position:457-725
               
               
               Cow position:chr13:12733799-12733522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:192
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):20, 31

               
               
               Conread position:460-820
               
               
               Cow position:chr13:3534747-3534386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:246
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):106, 50

               
               
               Conread position:463-764
               
               
               Cow position:chr13:38623313-38623606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):113, 18

               
               
               Conread position:463-767
               
               
               Cow position:chr13:19414612-19414898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):214, 26

               
               
               Conread position:469-767
               
               
               Cow position:chr13:60699445-60699139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):81, 27

               
               
               Conread position:473-820
               
               
               Cow position:chr13:44752114-44752464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:226
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):84, 180

               
               
               Conread position:480-820
               
               
               Cow position:chr13:32736018-32735688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 75

               
               
               Conread position:483-820
               
               
               Cow position:chr13:14186156-14186504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 130

               
               
               Conread position:497-755
               
               
               Cow position:chr13:31690972-31690721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:177
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):111, 55

               
               
               Conread position:509-820
               
               
               Cow position:chr13:62024771-62024464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 106

               
               
               Conread position:546-822
               
               
               Cow position:chr13:728458-728739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):20, 80

               
               
               Conread position:547-820
               
               
               Cow position:chr13:11388230-11388501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:198
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):131, 17

               
               
               Conread position:550-820
               
               
               Cow position:chr13:49494945-49494674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:197
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):58, 19

               
               
               Conread position:565-799
               
               
               Cow position:chr13:57025083-57025318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):110, 58

               
               
               Conread position:573-794
               
               
               Cow position:chr13:43849477-43849255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):81, 52

               
               
               Conread position:574-820
               
               
               Cow position:chr13:9298704-9298950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):104, 51

               
               
               Conread position:593-820
               
               
               Cow position:chr13:34869249-34869476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):84, 32

               
               
               Conread position:606-820
               
               
               Cow position:chr13:5624456-5624244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):72, 19

               
               
               Conread position:621-820
               
               
               Cow position:chr13:19128330-19128132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):57, 17

               
               
               Conread position:622-821
               
               
               Cow position:chr13:7725142-7724947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):54, 167

               
               
               Conread position:624-821
               
               
               Cow position:chr13:11763326-11763128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:627-820
               
               
               Cow position:chr13:36348826-36348636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):51, 164

               
               
               Conread position:675-820
               
               
               Cow position:chr13:3760270-3760125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:223-657
               
               
               Cow position:chr14:44689837-44690280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 22

               
               
               Conread position:225-731
               
               
               Cow position:chr14:10147642-10148165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:530
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-782
               
               
               Cow position:chr14:44255988-44255440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:570
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 17

               
               
               Conread position:225-799
               
               
               Cow position:chr14:12124415-12123824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:598
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr14:1659224-1659834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:438
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr14:27978129-27978735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:443
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr14:45028223-45027623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr14:45671278-45670652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:630
               
               
               Alignm identity:442
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:226-818
               
               
               Cow position:chr14:29775311-29774745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:402
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):71, 16

               
               
               Conread position:227-623
               
               
               Cow position:chr14:45081825-45082238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 18

               
               
               Conread position:227-731
               
               
               Cow position:chr14:23932383-23932879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:523
               
               
               Alignm identity:348
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):69, 18

               
               
               Conread position:227-818
               
               
               Cow position:chr14:17760109-17759521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:608
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 18

               
               
               Conread position:227-820
               
               
               Cow position:chr14:45710953-45710359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:395
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 18

               
               
               Conread position:227-828
               
               
               Cow position:chr14:30595598-30594967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:642
               
               
               Alignm identity:431
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 19

               
               
               Conread position:228-588
               
               
               Cow position:chr14:46391760-46391400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:250
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):72, 140

               
               
               Conread position:228-820
               
               
               Cow position:chr14:11153379-11152773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 17

               
               
               Conread position:228-820
               
               
               Cow position:chr14:29046912-29046292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:626
               
               
               Alignm identity:445
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 33

               
               
               Conread position:231-471
               
               
               Cow position:chr14:12899873-12900120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):69, 11

               
               
               Conread position:231-471
               
               
               Cow position:chr14:13620365-13620118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):68, 16

               
               
               Conread position:231-820
               
               
               Cow position:chr14:19327486-19326883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 16

               
               
               Conread position:232-488
               
               
               Cow position:chr14:37224967-37225234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-505
               
               
               Cow position:chr14:46637329-46637601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:203
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):68, 28

               
               
               Conread position:232-537
               
               
               Cow position:chr14:13462294-13462607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):21, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr14:5529836-5530437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 92

               
               
               Conread position:232-820
               
               
               Cow position:chr14:12742292-12741667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:638
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr14:13303735-13304334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr14:16918942-16918342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr14:17000282-16999672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr14:20783231-20783847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:623
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr14:48601559-48600973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:233-589
               
               
               Cow position:chr14:30705535-30705164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 12

               
               
               Conread position:233-702
               
               
               Cow position:chr14:13274385-13274867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 213

               
               
               Conread position:233-820
               
               
               Cow position:chr14:48826064-48826654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:606
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 14

               
               
               Conread position:234-820
               
               
               Cow position:chr14:22030669-22030070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:604
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 167

               
               
               Conread position:235-820
               
               
               Cow position:chr14:44552630-44553210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:419
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 87

               
               
               Conread position:236-640
               
               
               Cow position:chr14:35385033-35384631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:284
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):64, 11

               
               
               Conread position:236-820
               
               
               Cow position:chr14:2295070-2295647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:598
               
               
               Alignm identity:396
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 12

               
               
               Conread position:237-658
               
               
               Cow position:chr14:44582144-44582582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:282
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):52, 43

               
               
               Conread position:237-749
               
               
               Cow position:chr14:33402471-33402988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:532
               
               
               Alignm identity:347
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):60, 88

               
               
               Conread position:238-821
               
               
               Cow position:chr14:32447747-32448337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 80

               
               
               Conread position:241-677
               
               
               Cow position:chr14:50139349-50139803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 20

               
               
               Conread position:242-561
               
               
               Cow position:chr14:30735957-30736279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:227
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):55, 79

               
               
               Conread position:242-587
               
               
               Cow position:chr14:40168947-40168598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:247
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):56, 157

               
               
               Conread position:242-617
               
               
               Cow position:chr14:48402365-48401989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:264
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):55, 150

               
               
               Conread position:242-636
               
               
               Cow position:chr14:17490674-17490273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):55, 79

               
               
               Conread position:242-800
               
               
               Cow position:chr14:9046361-9046939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:584
               
               
               Alignm identity:402
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 245

               
               
               Conread position:242-805
               
               
               Cow position:chr14:13833936-13834504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:580
               
               
               Alignm identity:360
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):298, 113

               
               
               Conread position:242-820
               
               
               Cow position:chr14:751350-751944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:603
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 80

               
               
               Conread position:242-820
               
               
               Cow position:chr14:7473137-7473731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:601
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 17

               
               
               Conread position:245-509
               
               
               Cow position:chr14:39722164-39721912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):57, 80

               
               
               Conread position:245-647
               
               
               Cow position:chr14:40341845-40342262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 80

               
               
               Conread position:245-692
               
               
               Cow position:chr14:16272504-16272044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 15

               
               
               Conread position:245-819
               
               
               Cow position:chr14:13863308-13862724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:595
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 239

               
               
               Conread position:245-828
               
               
               Cow position:chr14:45678291-45677697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:604
               
               
               Alignm identity:449
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 18

               
               
               Conread position:248-659
               
               
               Cow position:chr14:30762087-30761661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 19

               
               
               Conread position:248-663
               
               
               Cow position:chr14:50111585-50112025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 238

               
               
               Conread position:248-720
               
               
               Cow position:chr14:33689000-33689467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 119

               
               
               Conread position:248-809
               
               
               Cow position:chr14:12611221-12611778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:578
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 74

               
               
               Conread position:248-818
               
               
               Cow position:chr14:13779739-13780329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:598
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 77

               
               
               Conread position:248-820
               
               
               Cow position:chr14:18105237-18105801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:585
               
               
               Alignm identity:389
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 11

               
               
               Conread position:248-820
               
               
               Cow position:chr14:33677860-33678441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:595
               
               
               Alignm identity:403
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 32

               
               
               Conread position:248-821
               
               
               Cow position:chr14:24522725-24523317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:391
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):23, 11

               
               
               Conread position:251-568
               
               
               Cow position:chr14:2951766-2951455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 78

               
               
               Conread position:251-764
               
               
               Cow position:chr14:47940196-47939657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:548
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 74

               
               
               Conread position:251-820
               
               
               Cow position:chr14:5513731-5514306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:588
               
               
               Alignm identity:408
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 157

               
               
               Conread position:251-820
               
               
               Cow position:chr14:15275056-15274462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:603
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 245

               
               
               Conread position:251-820
               
               
               Cow position:chr14:48253520-48252948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:591
               
               
               Alignm identity:405
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 234

               
               
               Conread position:251-822
               
               
               Cow position:chr14:44775244-44774692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:582
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 212

               
               
               Conread position:252-716
               
               
               Cow position:chr14:44227170-44227652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 70

               
               
               Conread position:252-809
               
               
               Cow position:chr14:28124196-28123656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:568
               
               
               Alignm identity:352
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):12, 109

               
               
               Conread position:254-820
               
               
               Cow position:chr14:5074750-5075321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:586
               
               
               Alignm identity:389
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 175

               
               
               Conread position:255-832
               
               
               Cow position:chr14:37412290-37411728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:588
               
               
               Alignm identity:306
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):131, 202

               
               
               Conread position:261-778
               
               
               Cow position:chr14:38814677-38814153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:527
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 48

               
               
               Conread position:261-820
               
               
               Cow position:chr14:17687308-17687875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:580
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 59

               
               
               Conread position:262-555
               
               
               Cow position:chr14:34861272-34861551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:217
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):68, 40

               
               
               Conread position:262-752
               
               
               Cow position:chr14:45207109-45207591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:339
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):8, 41

               
               
               Conread position:262-805
               
               
               Cow position:chr14:30661255-30660706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:565
               
               
               Alignm identity:357
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):35, 134

               
               
               Conread position:262-820
               
               
               Cow position:chr14:9514482-9513954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:568
               
               
               Alignm identity:395
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 144

               
               
               Conread position:262-820
               
               
               Cow position:chr14:23256550-23255982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:582
               
               
               Alignm identity:397
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 60

               
               
               Conread position:263-809
               
               
               Cow position:chr14:43555785-43556349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:575
               
               
               Alignm identity:403
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 178

               
               
               Conread position:263-820
               
               
               Cow position:chr14:37455107-37454562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:571
               
               
               Alignm identity:389
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 62

               
               
               Conread position:271-676
               
               
               Cow position:chr14:13579207-13579619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:295
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):28, 138

               
               
               Conread position:281-820
               
               
               Cow position:chr14:190868-191429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:572
               
               
               Alignm identity:394
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 207

               
               
               Conread position:282-684
               
               
               Cow position:chr14:25365657-25365249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:273
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):106, 63

               
               
               Conread position:297-781
               
               
               Cow position:chr14:21744945-21745418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:323
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):33, 175

               
               
               Conread position:297-809
               
               
               Cow position:chr14:43559080-43559606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:535
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 178

               
               
               Conread position:298-805
               
               
               Cow position:chr14:38147850-38148353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 19

               
               
               Conread position:299-686
               
               
               Cow position:chr14:33240311-33240682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:266
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):30, 20

               
               
               Conread position:303-820
               
               
               Cow position:chr14:45086092-45086599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:524
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 169

               
               
               Conread position:313-781
               
               
               Cow position:chr14:46402842-46403291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:322
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):47, 136

               
               
               Conread position:322-656
               
               
               Cow position:chr14:29581035-29581357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):19, 109

               
               
               Conread position:323-713
               
               
               Cow position:chr14:31392440-31392060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:248
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):43, 22

               
               
               Conread position:325-820
               
               
               Cow position:chr14:11610445-11609965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:329
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):21, 38

               
               
               Conread position:325-820
               
               
               Cow position:chr14:45188921-45188433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:343
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):37, 70

               
               
               Conread position:329-550
               
               
               Cow position:chr14:28244794-28244577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):12, 94

               
               
               Conread position:346-574
               
               
               Cow position:chr14:44292108-44292334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):50, 130

               
               
               Conread position:346-820
               
               
               Cow position:chr14:44289963-44290443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 130

               
               
               Conread position:360-597
               
               
               Cow position:chr14:31882367-31882615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):28, 119

               
               
               Conread position:360-635
               
               
               Cow position:chr14:30583686-30583405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:199
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):28, 46

               
               
               Conread position:360-741
               
               
               Cow position:chr14:11654939-11654565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:260
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):36, 81

               
               
               Conread position:361-523
               
               
               Cow position:chr14:47925999-47926155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):21, 44

               
               
               Conread position:367-820
               
               
               Cow position:chr14:18417422-18417883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 107

               
               
               Conread position:373-678
               
               
               Cow position:chr14:30666399-30666701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):96, 117

               
               
               Conread position:373-750
               
               
               Cow position:chr14:32532070-32531702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:256
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):161, 31

               
               
               Conread position:373-820
               
               
               Cow position:chr14:47643222-47643666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 87

               
               
               Conread position:376-822
               
               
               Cow position:chr14:46466600-46467038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 50

               
               
               Conread position:377-819
               
               
               Cow position:chr14:13089789-13090219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:293
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):164, 41

               
               
               Conread position:380-731
               
               
               Cow position:chr14:39298275-39298594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:238
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):297, 73

               
               
               Conread position:385-820
               
               
               Cow position:chr14:19056613-19056194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:278
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):191, 67

               
               
               Conread position:388-820
               
               
               Cow position:chr14:17490402-17489961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):169, 248

               
               
               Conread position:395-761
               
               
               Cow position:chr14:34042103-34041762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:254
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):27, 75

               
               
               Conread position:401-822
               
               
               Cow position:chr14:44380296-44380727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:295
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):120, 66

               
               
               Conread position:404-728
               
               
               Cow position:chr14:35364874-35364544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:242
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):141, 52

               
               
               Conread position:405-820
               
               
               Cow position:chr14:2287224-2287644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 70

               
               
               Conread position:408-820
               
               
               Cow position:chr14:20564654-20564268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):268, 61

               
               
               Conread position:410-821
               
               
               Cow position:chr14:49217087-49217493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:277
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):111, 42

               
               
               Conread position:414-820
               
               
               Cow position:chr14:35930558-35930965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:273
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):40, 215

               
               
               Conread position:440-767
               
               
               Cow position:chr14:9521725-9521394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:240
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):22, 37

               
               
               Conread position:445-818
               
               
               Cow position:chr14:46546930-46547279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:249
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):68, 7

               
               
               Conread position:456-749
               
               
               Cow position:chr14:33605913-33605608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):94, 21

               
               
               Conread position:456-820
               
               
               Cow position:chr14:16342894-16342522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 177

               
               
               Conread position:473-820
               
               
               Cow position:chr14:16808299-16807943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 16

               
               
               Conread position:478-820
               
               
               Cow position:chr14:37225182-37225535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 156

               
               
               Conread position:484-820
               
               
               Cow position:chr14:35425156-35425496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:204
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):86, 118

               
               
               Conread position:489-819
               
               
               Cow position:chr14:9102569-9102905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):73, 150

               
               
               Conread position:499-820
               
               
               Cow position:chr14:11476240-11475911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 131

               
               
               Conread position:516-820
               
               
               Cow position:chr14:21381182-21380890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:204
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):69, 36

               
               
               Conread position:545-820
               
               
               Cow position:chr14:40167575-40167300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):20, 81

               
               
               Conread position:552-820
               
               
               Cow position:chr14:33392811-33392545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):126, 8

               
               
               Conread position:565-767
               
               
               Cow position:chr14:17610190-17610388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):112, 29

               
               
               Conread position:570-820
               
               
               Cow position:chr14:34861753-34862004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:186
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):38, 63

               
               
               Conread position:573-820
               
               
               Cow position:chr14:33712210-33712454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):35, 42

               
               
               Conread position:578-820
               
               
               Cow position:chr14:29223947-29223702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:180
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):100, 52

               
               
               Conread position:593-820
               
               
               Cow position:chr14:26034970-26035191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:614-755
               
               
               Cow position:chr14:34053224-34053364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):31, 11

               
               
               Conread position:618-781
               
               
               Cow position:chr14:30704987-30704822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:624-822
               
               
               Cow position:chr14:45082297-45082496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):50, 77

               
               
               Conread position:627-820
               
               
               Cow position:chr14:46390444-46390252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):51, 143

               
               
               Conread position:628-820
               
               
               Cow position:chr14:30583214-30583021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:628-820
               
               
               Cow position:chr14:47656572-47656758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):50, 124

               
               
               Conread position:636-820
               
               
               Cow position:chr14:42122383-42122200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):42, 160

               
               
               Conread position:640-820
               
               
               Cow position:chr14:20911115-20911291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):38, 58

               
               
               Conread position:645-828
               
               
               Cow position:chr14:35384420-35384238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):32, 110

               
               
               Conread position:657-828
               
               
               Cow position:chr14:13462672-13462843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):16, 99

               
               
               Conread position:659-820
               
               
               Cow position:chr14:33490054-33490216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):19, 67

               
               
               Conread position:175-808
               
               
               Cow position:chr15:21948434-21947798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:658
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 166

               
               
               Conread position:221-809
               
               
               Cow position:chr15:329094-329699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 268

               
               
               Conread position:224-828
               
               
               Cow position:chr15:8100238-8100836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:419
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 21

               
               
               Conread position:225-528
               
               
               Cow position:chr15:445385-445690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):72, 20

               
               
               Conread position:225-752
               
               
               Cow position:chr15:1773269-1773809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:551
               
               
               Alignm identity:396
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-781
               
               
               Cow position:chr15:3009072-3008506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:581
               
               
               Alignm identity:404
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr15:2646884-2646276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr15:4197233-4197844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr15:50123163-50122561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr15:53409686-53410284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 17

               
               
               Conread position:227-598
               
               
               Cow position:chr15:38981500-38981888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:275
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):73, 18

               
               
               Conread position:227-820
               
               
               Cow position:chr15:4922918-4923522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 18

               
               
               Conread position:227-820
               
               
               Cow position:chr15:5981122-5981734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:623
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 18

               
               
               Conread position:227-820
               
               
               Cow position:chr15:14581590-14580982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:421
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 18

               
               
               Conread position:227-820
               
               
               Cow position:chr15:35646904-35646306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 18

               
               
               Conread position:227-828
               
               
               Cow position:chr15:2926081-2926676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 19

               
               
               Conread position:228-620
               
               
               Cow position:chr15:1783009-1783406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:273
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):70, 94

               
               
               Conread position:228-820
               
               
               Cow position:chr15:2588680-2588070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 144

               
               
               Conread position:228-820
               
               
               Cow position:chr15:32711997-32712614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:402
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 94

               
               
               Conread position:229-589
               
               
               Cow position:chr15:7235022-7235395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:261
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):71, 16

               
               
               Conread position:229-820
               
               
               Cow position:chr15:6155168-6154550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:629
               
               
               Alignm identity:442
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 32

               
               
               Conread position:230-538
               
               
               Cow position:chr15:4950841-4951146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:222
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):25, 57

               
               
               Conread position:231-805
               
               
               Cow position:chr15:8751181-8751756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:592
               
               
               Alignm identity:402
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 31

               
               
               Conread position:231-820
               
               
               Cow position:chr15:580207-580792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:606
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 14

               
               
               Conread position:231-820
               
               
               Cow position:chr15:4962413-4962991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:601
               
               
               Alignm identity:402
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 16

               
               
               Conread position:232-755
               
               
               Cow position:chr15:50147853-50148398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:553
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr15:2077436-2078026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:415
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr15:18332050-18331456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:608
               
               
               Alignm identity:421
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr15:21664965-21664365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr15:24295863-24296464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr15:35752541-35751928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 13

               
               
               Conread position:233-784
               
               
               Cow position:chr15:7261386-7261941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:574
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 26

               
               
               Conread position:233-820
               
               
               Cow position:chr15:9430717-9431314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:382
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):49, 29

               
               
               Conread position:234-820
               
               
               Cow position:chr15:7838040-7838646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 254

               
               
               Conread position:234-820
               
               
               Cow position:chr15:17293826-17294426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 173

               
               
               Conread position:234-828
               
               
               Cow position:chr15:4672218-4672818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 11

               
               
               Conread position:235-820
               
               
               Cow position:chr15:3260539-3259944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:408
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 10

               
               
               Conread position:235-828
               
               
               Cow position:chr15:1299777-1299145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:641
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 7

               
               
               Conread position:242-444
               
               
               Cow position:chr15:2674861-2674649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):44, 17

               
               
               Conread position:242-589
               
               
               Cow position:chr15:51715701-51716052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:244
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):67, 141

               
               
               Conread position:242-599
               
               
               Cow position:chr15:20750177-20750547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:260
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):55, 245

               
               
               Conread position:242-629
               
               
               Cow position:chr15:6067391-6067007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:263
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):45, 83

               
               
               Conread position:242-787
               
               
               Cow position:chr15:4679045-4679621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:584
               
               
               Alignm identity:388
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 78

               
               
               Conread position:242-788
               
               
               Cow position:chr15:51675503-51676067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:575
               
               
               Alignm identity:391
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 80

               
               
               Conread position:242-819
               
               
               Cow position:chr15:5010850-5010256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:603
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 81

               
               
               Conread position:242-820
               
               
               Cow position:chr15:17148909-17149488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:596
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 205

               
               
               Conread position:242-820
               
               
               Cow position:chr15:20355816-20355221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:623
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 36

               
               
               Conread position:242-820
               
               
               Cow position:chr15:48284478-48285079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:381
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):80, 382

               
               
               Conread position:243-701
               
               
               Cow position:chr15:6485368-6485837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 79

               
               
               Conread position:243-820
               
               
               Cow position:chr15:15346325-15345731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 237

               
               
               Conread position:245-556
               
               
               Cow position:chr15:31860429-31860106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):55, 162

               
               
               Conread position:245-590
               
               
               Cow position:chr15:41357959-41358297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:250
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):23, 81

               
               
               Conread position:245-723
               
               
               Cow position:chr15:16346182-16345720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:312
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):47, 78

               
               
               Conread position:245-766
               
               
               Cow position:chr15:6079542-6080066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:535
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):141, 214

               
               
               Conread position:245-778
               
               
               Cow position:chr15:42530701-42531252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:554
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 242

               
               
               Conread position:245-805
               
               
               Cow position:chr15:2013349-2013923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:582
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 148

               
               
               Conread position:245-818
               
               
               Cow position:chr15:6383383-6382786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:601
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 343

               
               
               Conread position:245-819
               
               
               Cow position:chr15:18577502-18578091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:595
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 241

               
               
               Conread position:245-820
               
               
               Cow position:chr15:4927163-4927758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:606
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 50

               
               
               Conread position:245-820
               
               
               Cow position:chr15:9912440-9911859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 77

               
               
               Conread position:245-820
               
               
               Cow position:chr15:19737265-19736678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:598
               
               
               Alignm identity:419
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 14

               
               
               Conread position:245-820
               
               
               Cow position:chr15:32493085-32492506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:596
               
               
               Alignm identity:397
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 237

               
               
               Conread position:245-828
               
               
               Cow position:chr15:35736582-35737180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 77

               
               
               Conread position:248-628
               
               
               Cow position:chr15:6553029-6552631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 239

               
               
               Conread position:248-820
               
               
               Cow position:chr15:4813393-4813967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:395
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 32

               
               
               Conread position:248-820
               
               
               Cow position:chr15:24794615-24795195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:594
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 75

               
               
               Conread position:251-820
               
               
               Cow position:chr15:28489350-28488777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:583
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 148

               
               
               Conread position:253-819
               
               
               Cow position:chr15:8058757-8059344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:598
               
               
               Alignm identity:402
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 71

               
               
               Conread position:254-820
               
               
               Cow position:chr15:21450481-21451072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:601
               
               
               Alignm identity:401
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 66

               
               
               Conread position:256-820
               
               
               Cow position:chr15:4386553-4387134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:589
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 173

               
               
               Conread position:257-751
               
               
               Cow position:chr15:7892529-7892039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 65

               
               
               Conread position:259-700
               
               
               Cow position:chr15:611497-611044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:313
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):39, 63

               
               
               Conread position:259-765
               
               
               Cow position:chr15:7550946-7551465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:532
               
               
               Alignm identity:346
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):23, 15

               
               
               Conread position:260-580
               
               
               Cow position:chr15:50056834-50057158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):40, 186

               
               
               Conread position:261-818
               
               
               Cow position:chr15:11293629-11293069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:583
               
               
               Alignm identity:394
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 176

               
               
               Conread position:261-820
               
               
               Cow position:chr15:17217320-17216776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:571
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 16

               
               
               Conread position:261-820
               
               
               Cow position:chr15:31359677-31360241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:577
               
               
               Alignm identity:400
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 218

               
               
               Conread position:261-828
               
               
               Cow position:chr15:2763608-2764181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:592
               
               
               Alignm identity:379
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):37, 179

               
               
               Conread position:262-820
               
               
               Cow position:chr15:4823274-4823809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:566
               
               
               Alignm identity:395
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 87

               
               
               Conread position:263-820
               
               
               Cow position:chr15:3182258-3181689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:574
               
               
               Alignm identity:397
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 196

               
               
               Conread position:264-574
               
               
               Cow position:chr15:6367993-6367666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):32, 22

               
               
               Conread position:282-799
               
               
               Cow position:chr15:4652200-4652726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:538
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 40

               
               
               Conread position:294-820
               
               
               Cow position:chr15:4686570-4687107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:554
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 23

               
               
               Conread position:297-558
               
               
               Cow position:chr15:7545691-7545956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):33, 178

               
               
               Conread position:297-567
               
               
               Cow position:chr15:7938294-7938561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):34, 155

               
               
               Conread position:297-758
               
               
               Cow position:chr15:1851590-1851152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:291
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):267, 20

               
               
               Conread position:297-813
               
               
               Cow position:chr15:24718187-24718694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:523
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 23

               
               
               Conread position:297-820
               
               
               Cow position:chr15:58502-59029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:542
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 68

               
               
               Conread position:297-820
               
               
               Cow position:chr15:2901419-2900883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:542
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 183

               
               
               Conread position:297-820
               
               
               Cow position:chr15:4766030-4766570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:547
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 141

               
               
               Conread position:297-820
               
               
               Cow position:chr15:25654227-25653683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:550
               
               
               Alignm identity:389
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 180

               
               
               Conread position:297-820
               
               
               Cow position:chr15:53299317-53299837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:536
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 20

               
               
               Conread position:297-821
               
               
               Cow position:chr15:16287101-16286570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:551
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 163

               
               
               Conread position:298-820
               
               
               Cow position:chr15:7563839-7564375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:543
               
               
               Alignm identity:386
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 19

               
               
               Conread position:298-820
               
               
               Cow position:chr15:18266929-18266388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:551
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 19

               
               
               Conread position:299-755
               
               
               Cow position:chr15:32479750-32479284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:313
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):55, 18

               
               
               Conread position:303-767
               
               
               Cow position:chr15:7330875-7330421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:315
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):50, 16

               
               
               Conread position:303-805
               
               
               Cow position:chr15:7965107-7964586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:535
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 17

               
               
               Conread position:308-820
               
               
               Cow position:chr15:20411452-20411973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:531
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 152

               
               
               Conread position:323-747
               
               
               Cow position:chr15:1238558-1238989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:296
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):69, 25

               
               
               Conread position:324-565
               
               
               Cow position:chr15:50253703-50253943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:172
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):63, 43

               
               
               Conread position:324-820
               
               
               Cow position:chr15:5952274-5951808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:326
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):13, 45

               
               
               Conread position:324-820
               
               
               Cow position:chr15:21914869-21915379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:320
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):17, 145

               
               
               Conread position:324-821
               
               
               Cow position:chr15:9003335-9002844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 134

               
               
               Conread position:324-828
               
               
               Cow position:chr15:4726078-4726587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 155

               
               
               Conread position:324-828
               
               
               Cow position:chr15:25106324-25105814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:340
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):54, 150

               
               
               Conread position:325-805
               
               
               Cow position:chr15:34366805-34366325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:327
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):21, 69

               
               
               Conread position:325-820
               
               
               Cow position:chr15:2412567-2412082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 20

               
               
               Conread position:326-746
               
               
               Cow position:chr15:33642966-33642531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:288
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):40, 25

               
               
               Conread position:327-806
               
               
               Cow position:chr15:1318310-1318781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:310
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):33, 75

               
               
               Conread position:330-807
               
               
               Cow position:chr15:4108429-4107944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:327
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):61, 31

               
               
               Conread position:334-813
               
               
               Cow position:chr15:36668609-36669070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:327
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):33, 12

               
               
               Conread position:360-820
               
               
               Cow position:chr15:6591209-6590738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 121

               
               
               Conread position:360-820
               
               
               Cow position:chr15:17036756-17036280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 124

               
               
               Conread position:361-539
               
               
               Cow position:chr15:13390929-13390757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):29, 77

               
               
               Conread position:363-804
               
               
               Cow position:chr15:6479308-6479741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:300
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):29, 87

               
               
               Conread position:365-661
               
               
               Cow position:chr15:40386813-40387105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):23, 37

               
               
               Conread position:365-820
               
               
               Cow position:chr15:1765237-1765693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 111

               
               
               Conread position:366-820
               
               
               Cow position:chr15:51218642-51219101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):186, 28

               
               
               Conread position:367-755
               
               
               Cow position:chr15:44071519-44071910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):183, 28

               
               
               Conread position:367-794
               
               
               Cow position:chr15:33797593-33797167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:292
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):63, 28

               
               
               Conread position:372-818
               
               
               Cow position:chr15:32067684-32067234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 45

               
               
               Conread position:373-695
               
               
               Cow position:chr15:22240064-22239738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):166, 71

               
               
               Conread position:374-821
               
               
               Cow position:chr15:53313653-53314076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:304
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):16, 33

               
               
               Conread position:376-638
               
               
               Cow position:chr15:6625943-6626199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):172, 58

               
               
               Conread position:376-784
               
               
               Cow position:chr15:26156766-26157162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 65

               
               
               Conread position:377-676
               
               
               Cow position:chr15:32515155-32514870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):182, 8

               
               
               Conread position:378-730
               
               
               Cow position:chr15:20361158-20360806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 22

               
               
               Conread position:379-821
               
               
               Cow position:chr15:3777745-3777311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:295
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):42, 31

               
               
               Conread position:385-574
               
               
               Cow position:chr15:12027113-12027300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):172, 81

               
               
               Conread position:385-781
               
               
               Cow position:chr15:11626600-11626993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 84

               
               
               Conread position:389-820
               
               
               Cow position:chr15:13074958-13075373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:292
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):161, 36

               
               
               Conread position:390-556
               
               
               Cow position:chr15:24216934-24216771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:401-649
               
               
               Cow position:chr15:523869-523615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):158, 20

               
               
               Conread position:406-798
               
               
               Cow position:chr15:24288511-24288120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 34

               
               
               Conread position:406-820
               
               
               Cow position:chr15:33122334-33122755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 69

               
               
               Conread position:409-806
               
               
               Cow position:chr15:44302136-44301743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 31

               
               
               Conread position:409-828
               
               
               Cow position:chr15:53339183-53339608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 58

               
               
               Conread position:410-820
               
               
               Cow position:chr15:38651148-38651571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:285
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):8, 43

               
               
               Conread position:416-731
               
               
               Cow position:chr15:22529784-22529469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:212
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):23, 54

               
               
               Conread position:419-820
               
               
               Cow position:chr15:3889896-3890281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):259, 33

               
               
               Conread position:421-800
               
               
               Cow position:chr15:4141763-4141380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 54

               
               
               Conread position:423-821
               
               
               Cow position:chr15:7929552-7929947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 33

               
               
               Conread position:431-819
               
               
               Cow position:chr15:41956802-41957183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:260
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):101, 24

               
               
               Conread position:432-820
               
               
               Cow position:chr15:31783928-31783549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:270
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):23, 7

               
               
               Conread position:432-820
               
               
               Cow position:chr15:31846435-31846822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:272
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):118, 30

               
               
               Conread position:436-820
               
               
               Cow position:chr15:35898790-35898399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 39

               
               
               Conread position:437-818
               
               
               Cow position:chr15:6279470-6279849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:265
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):27, 33

               
               
               Conread position:440-820
               
               
               Cow position:chr15:106991-107378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 35

               
               
               Conread position:440-820
               
               
               Cow position:chr15:17077572-17077187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 35

               
               
               Conread position:442-788
               
               
               Cow position:chr15:32340344-32340015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):20, 28

               
               
               Conread position:445-820
               
               
               Cow position:chr15:48007355-48007735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:246
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):8, 33

               
               
               Conread position:448-695
               
               
               Cow position:chr15:29343232-29342974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 41

               
               
               Conread position:448-820
               
               
               Cow position:chr15:51613121-51613514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:280
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):11, 22

               
               
               Conread position:455-692
               
               
               Cow position:chr15:8410113-8410346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):115, 14

               
               
               Conread position:457-820
               
               
               Cow position:chr15:1767848-1768205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:248
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):17, 41

               
               
               Conread position:462-798
               
               
               Cow position:chr15:29333782-29333447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):97, 19

               
               
               Conread position:466-781
               
               
               Cow position:chr15:500186-500509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:223
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):97, 50

               
               
               Conread position:471-820
               
               
               Cow position:chr15:6561606-6561964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 16

               
               
               Conread position:471-820
               
               
               Cow position:chr15:41659187-41659545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 16

               
               
               Conread position:471-821
               
               
               Cow position:chr15:32719641-32719302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):83, 18

               
               
               Conread position:480-696
               
               
               Cow position:chr15:12419912-12419691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):10, 152

               
               
               Conread position:480-820
               
               
               Cow position:chr15:25205978-25205629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 124

               
               
               Conread position:481-722
               
               
               Cow position:chr15:7783403-7783166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):70, 20

               
               
               Conread position:486-820
               
               
               Cow position:chr15:46553612-46553270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):43, 133

               
               
               Conread position:494-820
               
               
               Cow position:chr15:1833598-1833262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 142

               
               
               Conread position:502-692
               
               
               Cow position:chr15:1830535-1830338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):59, 118

               
               
               Conread position:513-831
               
               
               Cow position:chr15:6114650-6114976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:225
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):46, 195

               
               
               Conread position:522-820
               
               
               Cow position:chr15:6613790-6614098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:221
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):30, 114

               
               
               Conread position:525-818
               
               
               Cow position:chr15:41219938-41219650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):153, 20

               
               
               Conread position:541-820
               
               
               Cow position:chr15:7235427-7235703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):137, 22

               
               
               Conread position:546-820
               
               
               Cow position:chr15:13390218-13389947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 73

               
               
               Conread position:546-821
               
               
               Cow position:chr15:9737821-9737548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:198
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):132, 78

               
               
               Conread position:547-747
               
               
               Cow position:chr15:1879139-1878943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):129, 29

               
               
               Conread position:547-800
               
               
               Cow position:chr15:50869442-50869695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):109, 29

               
               
               Conread position:547-828
               
               
               Cow position:chr15:7545971-7546258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):61, 16

               
               
               Conread position:551-828
               
               
               Cow position:chr15:7939548-7939821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):127, 17

               
               
               Conread position:559-820
               
               
               Cow position:chr15:36624734-36624480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:565-820
               
               
               Cow position:chr15:368525-368276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):113, 60

               
               
               Conread position:571-818
               
               
               Cow position:chr15:10478397-10478151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):186, 57

               
               
               Conread position:610-819
               
               
               Cow position:chr15:14576140-14575919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:619-781
               
               
               Cow position:chr15:17122045-17122207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):54, 6

               
               
               Conread position:624-820
               
               
               Cow position:chr15:8698750-8698557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):52, 15

               
               
               Conread position:627-819
               
               
               Cow position:chr15:6552598-6552404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):49, 74

               
               
               Conread position:633-773
               
               
               Cow position:chr15:24041238-24041373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):45, 90

               
               
               Conread position:641-828
               
               
               Cow position:chr15:31859759-31859571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:645-820
               
               
               Cow position:chr15:4081034-4080858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:646-818
               
               
               Cow position:chr15:1783533-1783706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:224-560
               
               
               Cow position:chr16:15477268-15477606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:238
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):30, 39

               
               
               Conread position:225-550
               
               
               Cow position:chr16:11284019-11284350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-550
               
               
               Cow position:chr16:21186042-21186373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-590
               
               
               Cow position:chr16:25189075-25189436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:263
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-819
               
               
               Cow position:chr16:27593934-27594541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:438
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr16:3088774-3088169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:438
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr16:25342385-25343006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:629
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr16:28196818-28196206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 20

               
               
               Conread position:227-446
               
               
               Cow position:chr16:42735962-42735745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):72, 19

               
               
               Conread position:227-767
               
               
               Cow position:chr16:25001870-25001312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:572
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 18

               
               
               Conread position:227-784
               
               
               Cow position:chr16:2482707-2482137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:582
               
               
               Alignm identity:406
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 18

               
               
               Conread position:227-820
               
               
               Cow position:chr16:1432620-1433219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 19

               
               
               Conread position:227-820
               
               
               Cow position:chr16:25086046-25086646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 18

               
               
               Conread position:228-819
               
               
               Cow position:chr16:51084583-51085191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 19

               
               
               Conread position:228-820
               
               
               Cow position:chr16:34530732-34531322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:408
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 173

               
               
               Conread position:228-821
               
               
               Cow position:chr16:10375170-10374566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:431
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 94

               
               
               Conread position:229-734
               
               
               Cow position:chr16:49255798-49255284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:527
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 92

               
               
               Conread position:229-820
               
               
               Cow position:chr16:18497868-18497281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 90

               
               
               Conread position:229-828
               
               
               Cow position:chr16:16270704-16270094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:626
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 22

               
               
               Conread position:231-687
               
               
               Cow position:chr16:41166212-41165768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:319
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):70, 14

               
               
               Conread position:231-820
               
               
               Cow position:chr16:26978573-26979140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:595
               
               
               Alignm identity:396
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):262, 20

               
               
               Conread position:231-828
               
               
               Cow position:chr16:20202428-20203018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 14

               
               
               Conread position:232-588
               
               
               Cow position:chr16:3828839-3828495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:250
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):65, 96

               
               
               Conread position:232-633
               
               
               Cow position:chr16:23252003-23251577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-663
               
               
               Cow position:chr16:4478536-4478087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-687
               
               
               Cow position:chr16:406605-406134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr16:1567018-1566429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr16:7676023-7675423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:415
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr16:8815670-8815073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr16:10438686-10439293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr16:14665375-14664778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:419
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr16:15185506-15186113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr16:23535456-23534866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:606
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr16:23983730-23984337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr16:25442065-25442664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr16:25457040-25456446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr16:26664187-26664761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr16:27732946-27732347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr16:29047457-29048057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:608
               
               
               Alignm identity:415
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr16:40295740-40295132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:623
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr16:43896840-43896227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr16:54324901-54324294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 13

               
               
               Conread position:233-820
               
               
               Cow position:chr16:5485165-5485758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:604
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 174

               
               
               Conread position:233-820
               
               
               Cow position:chr16:5890431-5891031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:608
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 229

               
               
               Conread position:235-558
               
               
               Cow position:chr16:28169916-28169583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:237
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):63, 10

               
               
               Conread position:236-479
               
               
               Cow position:chr16:42185056-42184808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):32, 9

               
               
               Conread position:236-560
               
               
               Cow position:chr16:37455562-37455248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:225
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):63, 9

               
               
               Conread position:236-727
               
               
               Cow position:chr16:49279871-49280378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:327
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):64, 9

               
               
               Conread position:237-820
               
               
               Cow position:chr16:3330376-3330964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 88

               
               
               Conread position:238-490
               
               
               Cow position:chr16:56916633-56916369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):17, 7

               
               
               Conread position:242-643
               
               
               Cow position:chr16:11781949-11781543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:272
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):53, 232

               
               
               Conread position:242-820
               
               
               Cow position:chr16:19779207-19778617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:602
               
               
               Alignm identity:438
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 32

               
               
               Conread position:243-589
               
               
               Cow position:chr16:19638504-19638852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:256
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):11, 157

               
               
               Conread position:245-560
               
               
               Cow position:chr16:26105614-26105285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):56, 128

               
               
               Conread position:245-656
               
               
               Cow position:chr16:17056524-17056105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 80

               
               
               Conread position:245-665
               
               
               Cow position:chr16:31591470-31591040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 77

               
               
               Conread position:245-762
               
               
               Cow position:chr16:28437030-28436485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:555
               
               
               Alignm identity:395
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 205

               
               
               Conread position:245-794
               
               
               Cow position:chr16:39824381-39824930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:570
               
               
               Alignm identity:406
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 133

               
               
               Conread position:248-820
               
               
               Cow position:chr16:15567705-15568292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 131

               
               
               Conread position:248-822
               
               
               Cow position:chr16:27299676-27299113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:586
               
               
               Alignm identity:372
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):23, 11

               
               
               Conread position:251-550
               
               
               Cow position:chr16:27714359-27714069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):55, 179

               
               
               Conread position:251-773
               
               
               Cow position:chr16:25171798-25172337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:550
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 164

               
               
               Conread position:252-780
               
               
               Cow position:chr16:16897911-16898448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:547
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 35

               
               
               Conread position:252-820
               
               
               Cow position:chr16:337619-338220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:401
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 70

               
               
               Conread position:256-820
               
               
               Cow position:chr16:837774-838347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:585
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 221

               
               
               Conread position:256-820
               
               
               Cow position:chr16:2726772-2726180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:601
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 243

               
               
               Conread position:256-820
               
               
               Cow position:chr16:43648575-43649137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:583
               
               
               Alignm identity:366
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):16, 123

               
               
               Conread position:258-752
               
               
               Cow position:chr16:16520295-16519804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 23

               
               
               Conread position:262-561
               
               
               Cow position:chr16:38023785-38024090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:208
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):11, 203

               
               
               Conread position:262-748
               
               
               Cow position:chr16:56120133-56120619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 44

               
               
               Conread position:262-818
               
               
               Cow position:chr16:48334107-48333561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:571
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 60

               
               
               Conread position:262-820
               
               
               Cow position:chr16:46500653-46501235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:590
               
               
               Alignm identity:376
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):112, 42

               
               
               Conread position:263-820
               
               
               Cow position:chr16:25258286-25258837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:568
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 62

               
               
               Conread position:263-820
               
               
               Cow position:chr16:47474722-47475278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:575
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 11

               
               
               Conread position:273-820
               
               
               Cow position:chr16:28470600-28470027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:579
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 213

               
               
               Conread position:282-635
               
               
               Cow position:chr16:19080456-19080819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 13

               
               
               Conread position:297-646
               
               
               Cow position:chr16:51038579-51038926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:256
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):93, 23

               
               
               Conread position:297-744
               
               
               Cow position:chr16:10565275-10564824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:316
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):32, 13

               
               
               Conread position:297-820
               
               
               Cow position:chr16:49221380-49220883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:529
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 20

               
               
               Conread position:298-524
               
               
               Cow position:chr16:3918569-3918797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):29, 19

               
               
               Conread position:298-558
               
               
               Cow position:chr16:23808832-23809082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):256, 22

               
               
               Conread position:298-820
               
               
               Cow position:chr16:33032-33566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:549
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 19

               
               
               Conread position:298-820
               
               
               Cow position:chr16:5662339-5662874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:542
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 19

               
               
               Conread position:299-820
               
               
               Cow position:chr16:40557442-40556900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:557
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 166

               
               
               Conread position:324-767
               
               
               Cow position:chr16:9931274-9931714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:300
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):27, 65

               
               
               Conread position:324-820
               
               
               Cow position:chr16:8648486-8648977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:326
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):35, 127

               
               
               Conread position:324-820
               
               
               Cow position:chr16:51403361-51402841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:524
               
               
               Alignm identity:341
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):23, 325

               
               
               Conread position:325-642
               
               
               Cow position:chr16:41562618-41562939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):41, 127

               
               
               Conread position:328-820
               
               
               Cow position:chr16:19150052-19149567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 143

               
               
               Conread position:328-820
               
               
               Cow position:chr16:27823693-27823215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:319
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):65, 39

               
               
               Conread position:329-809
               
               
               Cow position:chr16:16228857-16229331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 126

               
               
               Conread position:333-820
               
               
               Cow position:chr16:12668245-12667744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 15

               
               
               Conread position:337-820
               
               
               Cow position:chr16:41685704-41685223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 82

               
               
               Conread position:347-820
               
               
               Cow position:chr16:2238207-2237736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 88

               
               
               Conread position:359-820
               
               
               Cow position:chr16:41754046-41753578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 85

               
               
               Conread position:361-820
               
               
               Cow position:chr16:1960043-1959591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 80

               
               
               Conread position:361-820
               
               
               Cow position:chr16:12537378-12536917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 25

               
               
               Conread position:361-820
               
               
               Cow position:chr16:41571960-41572434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 83

               
               
               Conread position:364-622
               
               
               Cow position:chr16:39366337-39366082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:175
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):29, 18

               
               
               Conread position:365-749
               
               
               Cow position:chr16:35159950-35160328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:265
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):23, 32

               
               
               Conread position:373-820
               
               
               Cow position:chr16:32937102-32937545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 97

               
               
               Conread position:373-831
               
               
               Cow position:chr16:30072007-30072449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:297
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):17, 94

               
               
               Conread position:374-643
               
               
               Cow position:chr16:7464902-7465174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:203
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):177, 14

               
               
               Conread position:374-673
               
               
               Cow position:chr16:18677932-18678237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:218
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):9, 40

               
               
               Conread position:374-820
               
               
               Cow position:chr16:5871477-5871928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 11

               
               
               Conread position:375-820
               
               
               Cow position:chr16:2410352-2409899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 78

               
               
               Conread position:376-550
               
               
               Cow position:chr16:25933282-25933453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):13, 94

               
               
               Conread position:376-800
               
               
               Cow position:chr16:10568238-10568645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:289
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):136, 70

               
               
               Conread position:377-522
               
               
               Cow position:chr16:34503903-34504049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):11, 61

               
               
               Conread position:377-820
               
               
               Cow position:chr16:52591091-52590648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 93

               
               
               Conread position:377-829
               
               
               Cow position:chr16:1860817-1861279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 100

               
               
               Conread position:378-814
               
               
               Cow position:chr16:707666-707234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:289
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):181, 23

               
               
               Conread position:379-820
               
               
               Cow position:chr16:42240322-42240751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:279
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):24, 42

               
               
               Conread position:380-820
               
               
               Cow position:chr16:23671293-23671743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 60

               
               
               Conread position:382-806
               
               
               Cow position:chr16:26655601-26656007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:275
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):7, 88

               
               
               Conread position:387-820
               
               
               Cow position:chr16:5527790-5527351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 67

               
               
               Conread position:390-819
               
               
               Cow position:chr16:24764959-24764521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:298
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):18, 8

               
               
               Conread position:395-820
               
               
               Cow position:chr16:37480253-37479821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 80

               
               
               Conread position:397-794
               
               
               Cow position:chr16:28158163-28158576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 72

               
               
               Conread position:401-767
               
               
               Cow position:chr16:16991457-16991830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:244
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):33, 17

               
               
               Conread position:422-659
               
               
               Cow position:chr16:29208539-29208308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):120, 47

               
               
               Conread position:422-767
               
               
               Cow position:chr16:44669755-44669416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):122, 26

               
               
               Conread position:435-776
               
               
               Cow position:chr16:4301565-4301203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:246
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):41, 195

               
               
               Conread position:435-820
               
               
               Cow position:chr16:41762464-41762853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:271
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):30, 59

               
               
               Conread position:440-767
               
               
               Cow position:chr16:27005699-27006011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):237, 29

               
               
               Conread position:472-796
               
               
               Cow position:chr16:49233806-49233479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):13, 125

               
               
               Conread position:484-820
               
               
               Cow position:chr16:47627960-47627615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:244
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):6, 113

               
               
               Conread position:492-820
               
               
               Cow position:chr16:18667084-18667417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:233
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):71, 143

               
               
               Conread position:497-820
               
               
               Cow position:chr16:16240581-16240259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:223
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):65, 23

               
               
               Conread position:506-814
               
               
               Cow position:chr16:44410776-44411067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:507-828
               
               
               Cow position:chr16:42735863-42735544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:217
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):7, 96

               
               
               Conread position:512-783
               
               
               Cow position:chr16:34504265-34504537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:207
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):45, 18

               
               
               Conread position:539-820
               
               
               Cow position:chr16:5119269-5118984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 90

               
               
               Conread position:547-807
               
               
               Cow position:chr16:12955782-12955535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):129, 22

               
               
               Conread position:552-820
               
               
               Cow position:chr16:28169555-28169287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:189
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):126, 73

               
               
               Conread position:558-758
               
               
               Cow position:chr16:29034709-29034911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):15, 69

               
               
               Conread position:565-828
               
               
               Cow position:chr16:23809140-23809393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):113, 29

               
               
               Conread position:588-820
               
               
               Cow position:chr16:46628786-46629019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):20, 27

               
               
               Conread position:607-822
               
               
               Cow position:chr16:25934009-25934223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):69, 7

               
               
               Conread position:618-820
               
               
               Cow position:chr16:20193339-20193137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):60, 7

               
               
               Conread position:622-820
               
               
               Cow position:chr16:43846378-43846182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):56, 28

               
               
               Conread position:625-820
               
               
               Cow position:chr16:3828501-3828307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):53, 109

               
               
               Conread position:628-820
               
               
               Cow position:chr16:27712342-27712151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):48, 107

               
               
               Conread position:633-817
               
               
               Cow position:chr16:25740108-25740287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):15, 114

               
               
               Conread position:633-822
               
               
               Cow position:chr16:41563218-41563420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:635-820
               
               
               Cow position:chr16:7465453-7465639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):38, 67

               
               
               Conread position:43-658
               
               
               Cow position:chr17:2555735-2555113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:630
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):345, 377

               
               
               Conread position:222-820
               
               
               Cow position:chr17:14240496-14241113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:626
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 23

               
               
               Conread position:225-514
               
               
               Cow position:chr17:31767041-31766744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-550
               
               
               Cow position:chr17:20390088-20389757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr17:182574-183180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:431
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 26

               
               
               Conread position:225-820
               
               
               Cow position:chr17:3655295-3654680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr17:9080423-9079812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:445
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr17:14216029-14215439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr17:24783159-24783771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:440
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr17:27793780-27793174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr17:34157118-34157731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr17:39049212-39049826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:450
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr17:43989500-43990111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:623
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 21

               
               
               Conread position:225-828
               
               
               Cow position:chr17:20086766-20086159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:623
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 21

               
               
               Conread position:227-676
               
               
               Cow position:chr17:13675287-13674828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:310
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):68, 20

               
               
               Conread position:227-768
               
               
               Cow position:chr17:150884-150357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:556
               
               
               Alignm identity:362
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):68, 18

               
               
               Conread position:227-820
               
               
               Cow position:chr17:15372228-15372817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 18

               
               
               Conread position:228-820
               
               
               Cow position:chr17:5227630-5228230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:406
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 17

               
               
               Conread position:228-820
               
               
               Cow position:chr17:15436782-15437393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 94

               
               
               Conread position:228-821
               
               
               Cow position:chr17:15142355-15141747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 94

               
               
               Conread position:229-633
               
               
               Cow position:chr17:14296268-14295862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:284
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):41, 31

               
               
               Conread position:230-809
               
               
               Cow position:chr17:3707774-3707199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:596
               
               
               Alignm identity:403
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 21

               
               
               Conread position:232-471
               
               
               Cow position:chr17:15324835-15325088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):67, 13

               
               
               Conread position:232-597
               
               
               Cow position:chr17:6120721-6121097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-731
               
               
               Cow position:chr17:2580630-2581142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:523
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr17:6260866-6261468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr17:19267821-19267236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-821
               
               
               Cow position:chr17:2077991-2077382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 260

               
               
               Conread position:232-821
               
               
               Cow position:chr17:6069559-6070153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-821
               
               
               Cow position:chr17:40805816-40806417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:236-695
               
               
               Cow position:chr17:2031136-2031596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 9

               
               
               Conread position:242-635
               
               
               Cow position:chr17:19020593-19020981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:266
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):55, 75

               
               
               Conread position:242-676
               
               
               Cow position:chr17:22558984-22559420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:297
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):58, 80

               
               
               Conread position:242-820
               
               
               Cow position:chr17:4083037-4083622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 78

               
               
               Conread position:242-820
               
               
               Cow position:chr17:11783868-11784476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 257

               
               
               Conread position:243-471
               
               
               Cow position:chr17:16856504-16856264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):6, 221

               
               
               Conread position:243-828
               
               
               Cow position:chr17:251166-251761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:397
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):43, 25

               
               
               Conread position:244-676
               
               
               Cow position:chr17:33284817-33284390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 174

               
               
               Conread position:245-623
               
               
               Cow position:chr17:21769991-21769594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 78

               
               
               Conread position:245-820
               
               
               Cow position:chr17:2247069-2246477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:601
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 23

               
               
               Conread position:245-820
               
               
               Cow position:chr17:15851706-15852302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:602
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 244

               
               
               Conread position:245-820
               
               
               Cow position:chr17:20099450-20098872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:594
               
               
               Alignm identity:404
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 77

               
               
               Conread position:245-820
               
               
               Cow position:chr17:23323435-23322839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 241

               
               
               Conread position:245-820
               
               
               Cow position:chr17:24028985-24028393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 236

               
               
               Conread position:256-767
               
               
               Cow position:chr17:7942039-7941522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:536
               
               
               Alignm identity:351
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):43, 73

               
               
               Conread position:259-820
               
               
               Cow position:chr17:20403463-20404027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:583
               
               
               Alignm identity:394
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 61

               
               
               Conread position:259-828
               
               
               Cow position:chr17:16121522-16120989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:583
               
               
               Alignm identity:390
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):41, 63

               
               
               Conread position:261-820
               
               
               Cow position:chr17:13705823-13706367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:577
               
               
               Alignm identity:373
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):30, 12

               
               
               Conread position:262-781
               
               
               Cow position:chr17:4604900-4605425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:543
               
               
               Alignm identity:355
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):50, 42

               
               
               Conread position:262-820
               
               
               Cow position:chr17:11086692-11086118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:580
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 226

               
               
               Conread position:263-820
               
               
               Cow position:chr17:20080836-20080287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:579
               
               
               Alignm identity:400
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 146

               
               
               Conread position:264-558
               
               
               Cow position:chr17:4941680-4941394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):36, 122

               
               
               Conread position:264-767
               
               
               Cow position:chr17:14040005-14039481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:534
               
               
               Alignm identity:352
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):36, 56

               
               
               Conread position:264-820
               
               
               Cow position:chr17:21418609-21419163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:569
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 176

               
               
               Conread position:265-765
               
               
               Cow position:chr17:23038618-23039117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 22

               
               
               Conread position:283-719
               
               
               Cow position:chr17:2174858-2175287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:294
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):17, 96

               
               
               Conread position:297-794
               
               
               Cow position:chr17:1656775-1656300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 139

               
               
               Conread position:297-795
               
               
               Cow position:chr17:1786879-1786382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 18

               
               
               Conread position:297-818
               
               
               Cow position:chr17:8203029-8203543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:539
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 23

               
               
               Conread position:297-828
               
               
               Cow position:chr17:6000404-5999881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:542
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 93

               
               
               Conread position:298-820
               
               
               Cow position:chr17:14936898-14936363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:542
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 185

               
               
               Conread position:324-812
               
               
               Cow position:chr17:17131239-17131720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:325
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):28, 67

               
               
               Conread position:328-820
               
               
               Cow position:chr17:2263252-2263748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):226, 137

               
               
               Conread position:332-794
               
               
               Cow position:chr17:19899134-19899605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 142

               
               
               Conread position:345-820
               
               
               Cow position:chr17:2169546-2170026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:325
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):98, 9

               
               
               Conread position:346-820
               
               
               Cow position:chr17:3640775-3640296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 47

               
               
               Conread position:349-819
               
               
               Cow position:chr17:44926195-44925734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:316
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):25, 17

               
               
               Conread position:350-743
               
               
               Cow position:chr17:38875621-38876014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:267
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):14, 88

               
               
               Conread position:360-820
               
               
               Cow position:chr17:28027361-28026898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:367-692
               
               
               Cow position:chr17:10841914-10842236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:234
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):27, 7

               
               
               Conread position:370-812
               
               
               Cow position:chr17:4675262-4675715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 31

               
               
               Conread position:373-692
               
               
               Cow position:chr17:31534018-31534331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 53

               
               
               Conread position:373-728
               
               
               Cow position:chr17:3204366-3204013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:242
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):19, 51

               
               
               Conread position:374-692
               
               
               Cow position:chr17:6077344-6077656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 80

               
               
               Conread position:375-731
               
               
               Cow position:chr17:33381420-33381065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:238
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):171, 13

               
               
               Conread position:376-777
               
               
               Cow position:chr17:1704028-1704437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 93

               
               
               Conread position:376-828
               
               
               Cow position:chr17:38946506-38946969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:299
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):12, 227

               
               
               Conread position:377-720
               
               
               Cow position:chr17:239472-239812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:232
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):170, 50

               
               
               Conread position:379-643
               
               
               Cow position:chr17:1881460-1881720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):172, 16

               
               
               Conread position:385-689
               
               
               Cow position:chr17:18592772-18593076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):78, 39

               
               
               Conread position:385-727
               
               
               Cow position:chr17:37110-37448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):57, 85

               
               
               Conread position:387-820
               
               
               Cow position:chr17:733175-732733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 82

               
               
               Conread position:393-558
               
               
               Cow position:chr17:22133424-22133584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:413-820
               
               
               Cow position:chr17:20489519-20489913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 50

               
               
               Conread position:437-820
               
               
               Cow position:chr17:42260387-42260768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:257
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):94, 57

               
               
               Conread position:455-673
               
               
               Cow position:chr17:3235231-3235443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):30, 102

               
               
               Conread position:456-820
               
               
               Cow position:chr17:4783572-4783203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:257
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):117, 13

               
               
               Conread position:456-829
               
               
               Cow position:chr17:15326513-15326897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 43

               
               
               Conread position:457-727
               
               
               Cow position:chr17:36001812-36001535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):84, 12

               
               
               Conread position:471-820
               
               
               Cow position:chr17:13967178-13967535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 16

               
               
               Conread position:472-828
               
               
               Cow position:chr17:29302009-29302374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 17

               
               
               Conread position:482-821
               
               
               Cow position:chr17:31094522-31094180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):118, 48

               
               
               Conread position:498-821
               
               
               Cow position:chr17:28874191-28873872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):63, 93

               
               
               Conread position:546-820
               
               
               Cow position:chr17:9751039-9751315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:195
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):132, 82

               
               
               Conread position:552-820
               
               
               Cow position:chr17:14306977-14306719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):123, 76

               
               
               Conread position:552-820
               
               
               Cow position:chr17:24335898-24336162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):21, 71

               
               
               Conread position:565-793
               
               
               Cow position:chr17:22133619-22133848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):81, 60

               
               
               Conread position:565-820
               
               
               Cow position:chr17:135984-136237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):113, 46

               
               
               Conread position:565-820
               
               
               Cow position:chr17:42267016-42267265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):112, 57

               
               
               Conread position:589-820
               
               
               Cow position:chr17:39818-40049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:173
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):89, 36

               
               
               Conread position:607-820
               
               
               Cow position:chr17:6121182-6121395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):71, 6

               
               
               Conread position:607-820
               
               
               Cow position:chr17:17257293-17257081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):71, 6

               
               
               Conread position:624-820
               
               
               Cow position:chr17:2554863-2554666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:632-820
               
               
               Cow position:chr17:20415040-20414851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:636-820
               
               
               Cow position:chr17:19980712-19980527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:638-820
               
               
               Cow position:chr17:4346153-4345970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:648-767
               
               
               Cow position:chr17:19366694-19366814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:131-820
               
               
               Cow position:chr18:25921514-25922208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:697
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):428, 401

               
               
               Conread position:224-820
               
               
               Cow position:chr18:29865402-29864794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 21

               
               
               Conread position:225-525
               
               
               Cow position:chr18:51661550-51661854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-819
               
               
               Cow position:chr18:19353569-19354183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:447
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr18:47742711-47743308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 21

               
               
               Conread position:225-820
               
               
               Cow position:chr18:51461844-51461233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:228-561
               
               
               Cow position:chr18:16079881-16080221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 94

               
               
               Conread position:231-464
               
               
               Cow position:chr18:32768965-32769209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):68, 14

               
               
               Conread position:232-599
               
               
               Cow position:chr18:40479609-40479988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-654
               
               
               Cow position:chr18:52652125-52652562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-676
               
               
               Cow position:chr18:54022915-54022459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 10

               
               
               Conread position:232-688
               
               
               Cow position:chr18:27837094-27836619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 13

               
               
               Conread position:232-762
               
               
               Cow position:chr18:41839598-41839059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:555
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 252

               
               
               Conread position:232-813
               
               
               Cow position:chr18:54004956-54004370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-819
               
               
               Cow position:chr18:28972669-28972070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr18:14131609-14132207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr18:14417195-14417786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr18:16175400-16174803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr18:23798865-23799461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr18:37507173-37507780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr18:51482085-51482671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:233-636
               
               
               Cow position:chr18:40345187-40344768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:278
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):67, 12

               
               
               Conread position:237-827
               
               
               Cow position:chr18:33142472-33143058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:377
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):63, 8

               
               
               Conread position:242-535
               
               
               Cow position:chr18:18495820-18495533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):23, 17

               
               
               Conread position:242-599
               
               
               Cow position:chr18:33300538-33300880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:241
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):58, 79

               
               
               Conread position:242-627
               
               
               Cow position:chr18:11273892-11273491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:288
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):55, 190

               
               
               Conread position:242-748
               
               
               Cow position:chr18:56013802-56014320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:533
               
               
               Alignm identity:349
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):58, 179

               
               
               Conread position:242-781
               
               
               Cow position:chr18:12237445-12237954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:546
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 95

               
               
               Conread position:242-813
               
               
               Cow position:chr18:20692950-20692366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:596
               
               
               Alignm identity:360
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):58, 119

               
               
               Conread position:242-821
               
               
               Cow position:chr18:51342911-51343501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:602
               
               
               Alignm identity:421
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 224

               
               
               Conread position:243-828
               
               
               Cow position:chr18:29238122-29238711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 79

               
               
               Conread position:244-803
               
               
               Cow position:chr18:16392855-16392312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:571
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 48

               
               
               Conread position:248-820
               
               
               Cow position:chr18:19405344-19404792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:588
               
               
               Alignm identity:374
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):49, 225

               
               
               Conread position:248-820
               
               
               Cow position:chr18:46867670-46867098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:402
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 77

               
               
               Conread position:252-828
               
               
               Cow position:chr18:33270177-33270724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:591
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 68

               
               
               Conread position:256-729
               
               
               Cow position:chr18:38343055-38342578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 221

               
               
               Conread position:261-820
               
               
               Cow position:chr18:25352500-25353079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:589
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 61

               
               
               Conread position:262-649
               
               
               Cow position:chr18:29407198-29406817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:253
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):84, 42

               
               
               Conread position:262-658
               
               
               Cow position:chr18:16276720-16276332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:264
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):27, 58

               
               
               Conread position:262-813
               
               
               Cow position:chr18:37663590-37664113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:562
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 63

               
               
               Conread position:264-625
               
               
               Cow position:chr18:16137603-16137238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:264
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):20, 10

               
               
               Conread position:264-820
               
               
               Cow position:chr18:54170264-54169706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:574
               
               
               Alignm identity:393
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 56

               
               
               Conread position:266-820
               
               
               Cow position:chr18:46876083-46875553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:569
               
               
               Alignm identity:398
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 164

               
               
               Conread position:296-480
               
               
               Cow position:chr18:51593080-51593265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):56, 24

               
               
               Conread position:297-561
               
               
               Cow position:chr18:25921257-25921529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):33, 184

               
               
               Conread position:297-820
               
               
               Cow position:chr18:16089404-16089937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:539
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 181

               
               
               Conread position:297-820
               
               
               Cow position:chr18:27988468-27989003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:541
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 184

               
               
               Conread position:297-820
               
               
               Cow position:chr18:36509898-36510434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:542
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 184

               
               
               Conread position:305-820
               
               
               Cow position:chr18:51694992-51695520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:536
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 12

               
               
               Conread position:324-820
               
               
               Cow position:chr18:4947286-4947764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:337
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):37, 44

               
               
               Conread position:325-616
               
               
               Cow position:chr18:5079168-5078877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):16, 61

               
               
               Conread position:327-765
               
               
               Cow position:chr18:45184603-45185039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:289
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):230, 55

               
               
               Conread position:329-781
               
               
               Cow position:chr18:26245303-26244844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 52

               
               
               Conread position:330-570
               
               
               Cow position:chr18:23448569-23448342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):45, 14

               
               
               Conread position:336-671
               
               
               Cow position:chr18:29046628-29046289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:231
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):56, 40

               
               
               Conread position:345-820
               
               
               Cow position:chr18:20235028-20234571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:312
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):47, 113

               
               
               Conread position:347-820
               
               
               Cow position:chr18:35054476-35054941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 94

               
               
               Conread position:348-528
               
               
               Cow position:chr18:18528539-18528706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):109, 61

               
               
               Conread position:348-636
               
               
               Cow position:chr18:17672467-17672173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):44, 16

               
               
               Conread position:360-820
               
               
               Cow position:chr18:23442450-23442000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:295
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):32, 48

               
               
               Conread position:360-828
               
               
               Cow position:chr18:33265693-33266172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 224

               
               
               Conread position:363-820
               
               
               Cow position:chr18:51274723-51274258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 52

               
               
               Conread position:363-821
               
               
               Cow position:chr18:15856567-15857013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 119

               
               
               Conread position:364-663
               
               
               Cow position:chr18:18450351-18450053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):187, 24

               
               
               Conread position:371-738
               
               
               Cow position:chr18:34043969-34044333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):198, 14

               
               
               Conread position:372-743
               
               
               Cow position:chr18:13357536-13357901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:251
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):9, 24

               
               
               Conread position:372-767
               
               
               Cow position:chr18:37558906-37559295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:265
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):178, 23

               
               
               Conread position:374-798
               
               
               Cow position:chr18:8101052-8100640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:278
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):14, 54

               
               
               Conread position:374-819
               
               
               Cow position:chr18:19471127-19471588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:309
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):59, 24

               
               
               Conread position:377-746
               
               
               Cow position:chr18:37351838-37352202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:239
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):171, 8

               
               
               Conread position:382-653
               
               
               Cow position:chr18:56428965-56428707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:388-820
               
               
               Cow position:chr18:19485525-19485960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 27

               
               
               Conread position:389-798
               
               
               Cow position:chr18:40316050-40315656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 14

               
               
               Conread position:389-820
               
               
               Cow position:chr18:37490210-37490639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):168, 28

               
               
               Conread position:396-805
               
               
               Cow position:chr18:12992486-12992885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:283
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):156, 71

               
               
               Conread position:400-600
               
               
               Cow position:chr18:20835045-20835244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):143, 69

               
               
               Conread position:404-723
               
               
               Cow position:chr18:16720439-16720117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):162, 61

               
               
               Conread position:409-781
               
               
               Cow position:chr18:33752109-33752474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:266
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):138, 25

               
               
               Conread position:421-820
               
               
               Cow position:chr18:18000047-17999639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:277
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):48, 31

               
               
               Conread position:434-820
               
               
               Cow position:chr18:36110687-36110287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:281
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):128, 35

               
               
               Conread position:435-743
               
               
               Cow position:chr18:37157800-37157485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):124, 34

               
               
               Conread position:447-819
               
               
               Cow position:chr18:51593434-51593812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:259
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):13, 43

               
               
               Conread position:456-822
               
               
               Cow position:chr18:25364610-25364985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:257
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):94, 36

               
               
               Conread position:458-828
               
               
               Cow position:chr18:17962295-17961924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:254
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):110, 9

               
               
               Conread position:459-821
               
               
               Cow position:chr18:5534460-5534824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 16

               
               
               Conread position:484-732
               
               
               Cow position:chr18:2646051-2645804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):88, 68

               
               
               Conread position:489-820
               
               
               Cow position:chr18:44049168-44049495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):15, 97

               
               
               Conread position:494-703
               
               
               Cow position:chr18:29021038-29020821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):50, 45

               
               
               Conread position:503-820
               
               
               Cow position:chr18:35373273-35372939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:233
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):54, 16

               
               
               Conread position:505-820
               
               
               Cow position:chr18:24617629-24617950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 74

               
               
               Conread position:535-820
               
               
               Cow position:chr18:42516162-42516446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 5

               
               
               Conread position:547-745
               
               
               Cow position:chr18:18852138-18852334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):128, 18

               
               
               Conread position:551-817
               
               
               Cow position:chr18:16150094-16150358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):22, 77

               
               
               Conread position:565-820
               
               
               Cow position:chr18:27538425-27538680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:188
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):113, 60

               
               
               Conread position:568-767
               
               
               Cow position:chr18:29074498-29074697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):108, 57

               
               
               Conread position:573-820
               
               
               Cow position:chr18:16869917-16870160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):23, 51

               
               
               Conread position:593-821
               
               
               Cow position:chr18:40482587-40482814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):83, 32

               
               
               Conread position:606-744
               
               
               Cow position:chr18:5078622-5078484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):19, 58

               
               
               Conread position:611-820
               
               
               Cow position:chr18:24714582-24714371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):8, 18

               
               
               Conread position:613-805
               
               
               Cow position:chr18:32166313-32166121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):65, 12

               
               
               Conread position:613-820
               
               
               Cow position:chr18:11273247-11273041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):65, 12

               
               
               Conread position:622-820
               
               
               Cow position:chr18:41647343-41647147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:624-755
               
               
               Cow position:chr18:37781856-37781724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:624-818
               
               
               Cow position:chr18:48469560-48469366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):52, 173

               
               
               Conread position:662-820
               
               
               Cow position:chr18:23660843-23660684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:117
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:225-601
               
               
               Cow position:chr19:33527324-33527703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-762
               
               
               Cow position:chr19:39511-40059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:560
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr19:773813-774426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:442
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr19:5900298-5899688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:443
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr19:7343280-7343889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr19:28594764-28595359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 20

               
               
               Conread position:227-658
               
               
               Cow position:chr19:256477-256923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:307
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):61, 18

               
               
               Conread position:227-711
               
               
               Cow position:chr19:50723769-50724261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 18

               
               
               Conread position:227-827
               
               
               Cow position:chr19:1588023-1587408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:626
               
               
               Alignm identity:431
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 18

               
               
               Conread position:231-821
               
               
               Cow position:chr19:438221-437616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 14

               
               
               Conread position:232-820
               
               
               Cow position:chr19:4386833-4387423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr19:5730090-5730666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:602
               
               
               Alignm identity:419
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 10

               
               
               Conread position:232-820
               
               
               Cow position:chr19:12774334-12774926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr19:20105945-20106548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr19:33874645-33875233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:233-762
               
               
               Cow position:chr19:32210856-32210308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:558
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 89

               
               
               Conread position:235-820
               
               
               Cow position:chr19:161907-161327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:604
               
               
               Alignm identity:390
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):53, 13

               
               
               Conread position:235-820
               
               
               Cow position:chr19:39667306-39666724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 12

               
               
               Conread position:241-580
               
               
               Cow position:chr19:44031607-44031950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):151, 63

               
               
               Conread position:242-550
               
               
               Cow position:chr19:6713500-6713197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:214
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):40, 32

               
               
               Conread position:242-608
               
               
               Cow position:chr19:11521939-11521569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:256
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):99, 53

               
               
               Conread position:242-718
               
               
               Cow position:chr19:40816284-40815791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 31

               
               
               Conread position:242-762
               
               
               Cow position:chr19:30756447-30756977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:546
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 83

               
               
               Conread position:242-820
               
               
               Cow position:chr19:9706933-9706342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 129

               
               
               Conread position:242-820
               
               
               Cow position:chr19:35384385-35383786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 84

               
               
               Conread position:243-820
               
               
               Cow position:chr19:39391737-39392331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:606
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 252

               
               
               Conread position:245-820
               
               
               Cow position:chr19:173487-174081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:603
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 221

               
               
               Conread position:245-820
               
               
               Cow position:chr19:40851218-40850647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:592
               
               
               Alignm identity:402
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 80

               
               
               Conread position:245-820
               
               
               Cow position:chr19:52150454-52149860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:601
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 77

               
               
               Conread position:248-589
               
               
               Cow position:chr19:29141173-29141519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):56, 11

               
               
               Conread position:248-820
               
               
               Cow position:chr19:39184307-39183722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:594
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 118

               
               
               Conread position:252-820
               
               
               Cow position:chr19:28580424-28579844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:594
               
               
               Alignm identity:415
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 143

               
               
               Conread position:261-820
               
               
               Cow position:chr19:892378-891817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:579
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 140

               
               
               Conread position:262-749
               
               
               Cow position:chr19:5027832-5027353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:323
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):300, 37

               
               
               Conread position:262-819
               
               
               Cow position:chr19:40886475-40885921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:569
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 88

               
               
               Conread position:263-478
               
               
               Cow position:chr19:48860963-48860738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:170
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:281-802
               
               
               Cow position:chr19:28405434-28404922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:538
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 86

               
               
               Conread position:281-820
               
               
               Cow position:chr19:205771-206334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:568
               
               
               Alignm identity:400
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 206

               
               
               Conread position:297-819
               
               
               Cow position:chr19:10509202-10508675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:539
               
               
               Alignm identity:344
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):85, 177

               
               
               Conread position:297-820
               
               
               Cow position:chr19:33942858-33943389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:541
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 183

               
               
               Conread position:302-821
               
               
               Cow position:chr19:788699-789212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:533
               
               
               Alignm identity:344
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):39, 155

               
               
               Conread position:310-820
               
               
               Cow position:chr19:16319330-16318807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:529
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 172

               
               
               Conread position:319-820
               
               
               Cow position:chr19:264958-265474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:332
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):7, 107

               
               
               Conread position:322-781
               
               
               Cow position:chr19:10366355-10366810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 32

               
               
               Conread position:326-783
               
               
               Cow position:chr19:40794922-40794459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:310
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):61, 92

               
               
               Conread position:326-820
               
               
               Cow position:chr19:342544-343071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:529
               
               
               Alignm identity:341
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):21, 133

               
               
               Conread position:330-809
               
               
               Cow position:chr19:27036288-27035835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:321
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):40, 68

               
               
               Conread position:340-783
               
               
               Cow position:chr19:16128472-16128940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:318
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):52, 251

               
               
               Conread position:350-689
               
               
               Cow position:chr19:9552837-9552483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:247
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):25, 17

               
               
               Conread position:363-809
               
               
               Cow position:chr19:55670252-55670691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:277
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):61, 13

               
               
               Conread position:365-692
               
               
               Cow position:chr19:39096818-39097121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:365-820
               
               
               Cow position:chr19:52842903-52843365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 5

               
               
               Conread position:367-579
               
               
               Cow position:chr19:25788785-25788578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):22, 53

               
               
               Conread position:371-707
               
               
               Cow position:chr19:19178771-19178429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):13, 25

               
               
               Conread position:372-820
               
               
               Cow position:chr19:32140019-32139572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:312
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):14, 85

               
               
               Conread position:382-820
               
               
               Cow position:chr19:2272729-2272295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:385-818
               
               
               Cow position:chr19:376335-375903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:291
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):50, 45

               
               
               Conread position:390-820
               
               
               Cow position:chr19:166743-166308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 58

               
               
               Conread position:405-828
               
               
               Cow position:chr19:23400829-23400419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 203

               
               
               Conread position:440-820
               
               
               Cow position:chr19:5678357-5677978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:252
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):132, 68

               
               
               Conread position:456-781
               
               
               Cow position:chr19:1660122-1660446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 20

               
               
               Conread position:489-766
               
               
               Cow position:chr19:4301549-4301819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):138, 74

               
               
               Conread position:496-820
               
               
               Cow position:chr19:48860273-48859932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 127

               
               
               Conread position:497-818
               
               
               Cow position:chr19:1583739-1584073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):38, 139

               
               
               Conread position:507-817
               
               
               Cow position:chr19:35107291-35106978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 124

               
               
               Conread position:543-779
               
               
               Cow position:chr19:28367482-28367715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):39, 26

               
               
               Conread position:549-805
               
               
               Cow position:chr19:39985238-39984989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):59, 66

               
               
               Conread position:549-820
               
               
               Cow position:chr19:40471139-40470877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 21

               
               
               Conread position:564-734
               
               
               Cow position:chr19:2586776-2586940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):54, 31

               
               
               Conread position:593-822
               
               
               Cow position:chr19:33596173-33595944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):85, 32

               
               
               Conread position:599-820
               
               
               Cow position:chr19:30559788-30560008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:162
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):79, 26

               
               
               Conread position:614-820
               
               
               Cow position:chr19:44032087-44032284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):62, 11

               
               
               Conread position:615-820
               
               
               Cow position:chr19:14159546-14159340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:159
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):63, 21

               
               
               Conread position:624-820
               
               
               Cow position:chr19:42582834-42582635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):54, 71

               
               
               Conread position:625-820
               
               
               Cow position:chr19:43146286-43146481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):13, 19

               
               
               Conread position:628-821
               
               
               Cow position:chr19:30453725-30453537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):50, 14

               
               
               Conread position:635-781
               
               
               Cow position:chr19:11900348-11900494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):43, 12

               
               
               Conread position:224-541
               
               
               Cow position:chr2:53330416-53330740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:238
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):77, 21

               
               
               Conread position:225-666
               
               
               Cow position:chr2:17424506-17424969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-686
               
               
               Cow position:chr2:63291316-63290856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:313
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):74, 20

               
               
               Conread position:225-767
               
               
               Cow position:chr2:19225534-19226081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:564
               
               
               Alignm identity:397
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 20

               
               
               Conread position:225-776
               
               
               Cow position:chr2:2412142-2411566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:584
               
               
               Alignm identity:397
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-816
               
               
               Cow position:chr2:49628431-49629019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:421
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 20

               
               
               Conread position:225-817
               
               
               Cow position:chr2:3323907-3323303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 20

               
               
               Conread position:225-819
               
               
               Cow position:chr2:47037780-47037168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:438
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 17

               
               
               Conread position:225-820
               
               
               Cow position:chr2:364414-363803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr2:9908568-9909188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:628
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr2:25028638-25028041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr2:26905100-26904508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr2:39422278-39422888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:443
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr2:41048396-41047764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:641
               
               
               Alignm identity:442
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr2:41687424-41688032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr2:52617129-52617740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr2:53540595-53541199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr2:54738145-54738751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr2:57336199-57336812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-821
               
               
               Cow position:chr2:26922080-26922693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:438
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-828
               
               
               Cow position:chr2:174905-174294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:625
               
               
               Alignm identity:431
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 20

               
               
               Conread position:227-446
               
               
               Cow position:chr2:22078445-22078668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):74, 18

               
               
               Conread position:227-471
               
               
               Cow position:chr2:24147519-24147766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:180
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):73, 18

               
               
               Conread position:227-822
               
               
               Cow position:chr2:6962173-6962777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 18

               
               
               Conread position:227-828
               
               
               Cow position:chr2:19012010-19012628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 18

               
               
               Conread position:230-635
               
               
               Cow position:chr2:211599-211212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:281
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):70, 15

               
               
               Conread position:230-796
               
               
               Cow position:chr2:36029711-36029157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:580
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 15

               
               
               Conread position:232-555
               
               
               Cow position:chr2:31298452-31298779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:234
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-755
               
               
               Cow position:chr2:51617914-51618463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:557
               
               
               Alignm identity:389
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 13

               
               
               Conread position:232-781
               
               
               Cow position:chr2:38374447-38375006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:574
               
               
               Alignm identity:400
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 97

               
               
               Conread position:232-820
               
               
               Cow position:chr2:247216-246623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 10

               
               
               Conread position:232-820
               
               
               Cow position:chr2:282030-281421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr2:9189377-9188781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:400
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr2:10610985-10610380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr2:11158461-11157856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr2:12223613-12223013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:401
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr2:16900920-16901520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr2:24925226-24925830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr2:42670044-42669437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr2:47811509-47812115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:431
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr2:80292092-80291498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr2:81257829-81258441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:233-732
               
               
               Cow position:chr2:49625243-49624753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:334
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):63, 39

               
               
               Conread position:234-820
               
               
               Cow position:chr2:41180801-41181378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:603
               
               
               Alignm identity:452
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 11

               
               
               Conread position:234-821
               
               
               Cow position:chr2:2087503-2086903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 11

               
               
               Conread position:235-820
               
               
               Cow position:chr2:36052346-36051761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:604
               
               
               Alignm identity:391
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 11

               
               
               Conread position:238-828
               
               
               Cow position:chr2:16074865-16074267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 7

               
               
               Conread position:238-828
               
               
               Cow position:chr2:78743250-78743827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:606
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 7

               
               
               Conread position:240-692
               
               
               Cow position:chr2:25743210-25743675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 194

               
               
               Conread position:240-828
               
               
               Cow position:chr2:41779894-41780463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:364
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):60, 5

               
               
               Conread position:242-482
               
               
               Cow position:chr2:74857886-74858134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):50, 139

               
               
               Conread position:242-567
               
               
               Cow position:chr2:43714638-43714968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:219
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):54, 131

               
               
               Conread position:242-667
               
               
               Cow position:chr2:36992856-36993281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:307
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):58, 38

               
               
               Conread position:242-695
               
               
               Cow position:chr2:387110-386645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 119

               
               
               Conread position:242-748
               
               
               Cow position:chr2:289112-288594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:527
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 82

               
               
               Conread position:242-818
               
               
               Cow position:chr2:24152072-24152640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:588
               
               
               Alignm identity:366
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):59, 139

               
               
               Conread position:242-820
               
               
               Cow position:chr2:9958397-9957808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:602
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 216

               
               
               Conread position:242-820
               
               
               Cow position:chr2:11693156-11693735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:595
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 83

               
               
               Conread position:242-820
               
               
               Cow position:chr2:43961366-43961938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:596
               
               
               Alignm identity:377
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):325, 104

               
               
               Conread position:242-828
               
               
               Cow position:chr2:15576168-15575574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 79

               
               
               Conread position:242-828
               
               
               Cow position:chr2:38801127-38800544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:604
               
               
               Alignm identity:379
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):60, 71

               
               
               Conread position:244-780
               
               
               Cow position:chr2:45916157-45915618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:555
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 65

               
               
               Conread position:245-820
               
               
               Cow position:chr2:4402485-4401886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:606
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 75

               
               
               Conread position:245-820
               
               
               Cow position:chr2:13045040-13044443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:603
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 241

               
               
               Conread position:248-446
               
               
               Cow position:chr2:315415-315216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):49, 73

               
               
               Conread position:248-503
               
               
               Cow position:chr2:19077459-19077715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):42, 213

               
               
               Conread position:248-726
               
               
               Cow position:chr2:26885456-26885925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:312
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):48, 146

               
               
               Conread position:248-809
               
               
               Cow position:chr2:6673921-6674484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:582
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 22

               
               
               Conread position:248-820
               
               
               Cow position:chr2:10185552-10184961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:419
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 233

               
               
               Conread position:248-820
               
               
               Cow position:chr2:28648926-28648344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:592
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 228

               
               
               Conread position:248-820
               
               
               Cow position:chr2:28793923-28794510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 74

               
               
               Conread position:248-829
               
               
               Cow position:chr2:65937556-65936954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 117

               
               
               Conread position:251-686
               
               
               Cow position:chr2:44990622-44990170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 18

               
               
               Conread position:251-828
               
               
               Cow position:chr2:32656325-32656907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:596
               
               
               Alignm identity:408
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 227

               
               
               Conread position:252-820
               
               
               Cow position:chr2:28640164-28639578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:403
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 70

               
               
               Conread position:252-829
               
               
               Cow position:chr2:34051837-34052436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 234

               
               
               Conread position:253-504
               
               
               Cow position:chr2:20901411-20901150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:190
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):28, 229

               
               
               Conread position:253-731
               
               
               Cow position:chr2:82369403-82369868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:329
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):34, 25

               
               
               Conread position:253-781
               
               
               Cow position:chr2:45967344-45966817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:552
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 73

               
               
               Conread position:253-820
               
               
               Cow position:chr2:35356697-35357252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:586
               
               
               Alignm identity:404
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 174

               
               
               Conread position:254-820
               
               
               Cow position:chr2:574275-574851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:586
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 222

               
               
               Conread position:255-471
               
               
               Cow position:chr2:50982673-50982445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:258-820
               
               
               Cow position:chr2:55483465-55482896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:585
               
               
               Alignm identity:403
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 64

               
               
               Conread position:259-831
               
               
               Cow position:chr2:34563975-34563397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:395
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 63

               
               
               Conread position:261-819
               
               
               Cow position:chr2:25887857-25887285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:579
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 7

               
               
               Conread position:261-820
               
               
               Cow position:chr2:5903632-5903078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:583
               
               
               Alignm identity:403
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 61

               
               
               Conread position:261-820
               
               
               Cow position:chr2:8119233-8119807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:584
               
               
               Alignm identity:421
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 225

               
               
               Conread position:262-507
               
               
               Cow position:chr2:3834275-3834028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):36, 97

               
               
               Conread position:262-683
               
               
               Cow position:chr2:1691659-1692089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:303
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):38, 204

               
               
               Conread position:262-734
               
               
               Cow position:chr2:34473881-34473417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 38

               
               
               Conread position:262-818
               
               
               Cow position:chr2:25766705-25767251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:571
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 66

               
               
               Conread position:262-820
               
               
               Cow position:chr2:72187797-72187234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:587
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 114

               
               
               Conread position:262-820
               
               
               Cow position:chr2:72681419-72680872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:569
               
               
               Alignm identity:391
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 112

               
               
               Conread position:263-782
               
               
               Cow position:chr2:16283029-16283540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:526
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 60

               
               
               Conread position:263-816
               
               
               Cow position:chr2:36975786-36976343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:583
               
               
               Alignm identity:397
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 59

               
               
               Conread position:263-828
               
               
               Cow position:chr2:45938991-45938429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:584
               
               
               Alignm identity:403
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 154

               
               
               Conread position:282-820
               
               
               Cow position:chr2:32458333-32457795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:556
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 35

               
               
               Conread position:297-441
               
               
               Cow position:chr2:18065210-18065064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:112
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):33, 123

               
               
               Conread position:297-475
               
               
               Cow position:chr2:56075814-56075993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):40, 63

               
               
               Conread position:297-527
               
               
               Cow position:chr2:43445681-43445909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:171
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):95, 20

               
               
               Conread position:297-555
               
               
               Cow position:chr2:28613604-28613340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):33, 186

               
               
               Conread position:297-820
               
               
               Cow position:chr2:10264674-10264146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:536
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 181

               
               
               Conread position:297-820
               
               
               Cow position:chr2:20892076-20891568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:536
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):238, 23

               
               
               Conread position:297-820
               
               
               Cow position:chr2:26868021-26867516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:532
               
               
               Alignm identity:349
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):82, 23

               
               
               Conread position:297-820
               
               
               Cow position:chr2:32434587-32434065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:536
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 20

               
               
               Conread position:297-820
               
               
               Cow position:chr2:47602535-47601999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:544
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 20

               
               
               Conread position:298-820
               
               
               Cow position:chr2:14210067-14209558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:539
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 19

               
               
               Conread position:298-821
               
               
               Cow position:chr2:6006109-6005583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:539
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 90

               
               
               Conread position:299-828
               
               
               Cow position:chr2:44934248-44933719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:547
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 18

               
               
               Conread position:301-776
               
               
               Cow position:chr2:24471892-24471409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 19

               
               
               Conread position:304-821
               
               
               Cow position:chr2:52063504-52064025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:534
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 16

               
               
               Conread position:318-727
               
               
               Cow position:chr2:66225763-66226167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:262
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):244, 23

               
               
               Conread position:322-786
               
               
               Cow position:chr2:44650024-44650479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 81

               
               
               Conread position:323-483
               
               
               Cow position:chr2:45918780-45918619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):18, 119

               
               
               Conread position:324-676
               
               
               Cow position:chr2:33795106-33794752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 148

               
               
               Conread position:324-685
               
               
               Cow position:chr2:72548134-72547773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:254
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):27, 153

               
               
               Conread position:324-820
               
               
               Cow position:chr2:64768424-64767936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 85

               
               
               Conread position:325-631
               
               
               Cow position:chr2:78763393-78763706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:215
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):64, 147

               
               
               Conread position:325-646
               
               
               Cow position:chr2:41154579-41154907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):16, 52

               
               
               Conread position:325-782
               
               
               Cow position:chr2:16291445-16291913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 150

               
               
               Conread position:325-818
               
               
               Cow position:chr2:905035-905525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 94

               
               
               Conread position:325-820
               
               
               Cow position:chr2:32065279-32064773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 155

               
               
               Conread position:328-820
               
               
               Cow position:chr2:47526599-47526104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 145

               
               
               Conread position:331-695
               
               
               Cow position:chr2:36082572-36082941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 109

               
               
               Conread position:332-828
               
               
               Cow position:chr2:6880120-6880631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:527
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 142

               
               
               Conread position:333-627
               
               
               Cow position:chr2:40453676-40453962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):43, 26

               
               
               Conread position:335-762
               
               
               Cow position:chr2:62660527-62660096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:273
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):31, 70

               
               
               Conread position:340-696
               
               
               Cow position:chr2:13481912-13481569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:253
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):93, 63

               
               
               Conread position:345-560
               
               
               Cow position:chr2:36076471-36076257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):16, 6

               
               
               Conread position:346-809
               
               
               Cow position:chr2:50078349-50078816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 126

               
               
               Conread position:349-731
               
               
               Cow position:chr2:51989002-51988612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 12

               
               
               Conread position:361-820
               
               
               Cow position:chr2:54693747-54694202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 56

               
               
               Conread position:362-630
               
               
               Cow position:chr2:5869551-5869287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):25, 96

               
               
               Conread position:363-818
               
               
               Cow position:chr2:20872676-20872233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 51

               
               
               Conread position:368-716
               
               
               Cow position:chr2:58988575-58988920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:233
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):142, 13

               
               
               Conread position:372-621
               
               
               Cow position:chr2:5715663-5715910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):10, 87

               
               
               Conread position:373-548
               
               
               Cow position:chr2:7629518-7629693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):15, 106

               
               
               Conread position:373-818
               
               
               Cow position:chr2:7326505-7326961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:303
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):15, 94

               
               
               Conread position:373-820
               
               
               Cow position:chr2:33088895-33089323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 58

               
               
               Conread position:373-820
               
               
               Cow position:chr2:44441301-44440861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:295
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):12, 56

               
               
               Conread position:374-818
               
               
               Cow position:chr2:74738358-74737915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:289
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):7, 52

               
               
               Conread position:375-788
               
               
               Cow position:chr2:47621811-47621415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:279
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):176, 10

               
               
               Conread position:376-818
               
               
               Cow position:chr2:56801818-56801406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:315
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):18, 58

               
               
               Conread position:376-819
               
               
               Cow position:chr2:36277587-36277160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:295
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):176, 64

               
               
               Conread position:376-820
               
               
               Cow position:chr2:74806375-74806818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:296
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):38, 23

               
               
               Conread position:378-766
               
               
               Cow position:chr2:2394571-2394966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:264
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):19, 29

               
               
               Conread position:384-755
               
               
               Cow position:chr2:54408798-54408438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:259
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):106, 68

               
               
               Conread position:385-820
               
               
               Cow position:chr2:11687310-11687705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:301
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):198, 28

               
               
               Conread position:385-820
               
               
               Cow position:chr2:11730597-11731016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:301
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):64, 46

               
               
               Conread position:391-820
               
               
               Cow position:chr2:36981220-36981654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):168, 11

               
               
               Conread position:395-806
               
               
               Cow position:chr2:31448676-31449081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:283
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):148, 74

               
               
               Conread position:395-820
               
               
               Cow position:chr2:24926252-24926679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):159, 19

               
               
               Conread position:398-550
               
               
               Cow position:chr2:11558619-11558767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:398-820
               
               
               Cow position:chr2:12696631-12696204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 29

               
               
               Conread position:402-820
               
               
               Cow position:chr2:44554244-44553830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:282
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):128, 67

               
               
               Conread position:404-803
               
               
               Cow position:chr2:72906380-72905967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:292
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):144, 48

               
               
               Conread position:406-759
               
               
               Cow position:chr2:15236672-15237014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):342, 50

               
               
               Conread position:409-820
               
               
               Cow position:chr2:17823481-17823863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 66

               
               
               Conread position:413-818
               
               
               Cow position:chr2:85082082-85081689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 35

               
               
               Conread position:421-767
               
               
               Cow position:chr2:2875002-2874669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):162, 54

               
               
               Conread position:423-821
               
               
               Cow position:chr2:10731996-10731595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 53

               
               
               Conread position:432-806
               
               
               Cow position:chr2:42221374-42221003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:246
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):135, 7

               
               
               Conread position:432-821
               
               
               Cow position:chr2:35200191-35199809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:254
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):140, 18

               
               
               Conread position:434-820
               
               
               Cow position:chr2:72688484-72688872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 21

               
               
               Conread position:459-746
               
               
               Cow position:chr2:1867847-1867569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):19, 31

               
               
               Conread position:469-752
               
               
               Cow position:chr2:2206910-2206624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):21, 156

               
               
               Conread position:469-820
               
               
               Cow position:chr2:56888640-56889002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 68

               
               
               Conread position:470-752
               
               
               Cow position:chr2:10681385-10681675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):15, 160

               
               
               Conread position:470-820
               
               
               Cow position:chr2:14823955-14824300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:253
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):89, 19

               
               
               Conread position:483-820
               
               
               Cow position:chr2:22078820-22079171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:245
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):66, 143

               
               
               Conread position:484-820
               
               
               Cow position:chr2:50982223-50981883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 123

               
               
               Conread position:493-815
               
               
               Cow position:chr2:11499789-11500095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):28, 86

               
               
               Conread position:495-809
               
               
               Cow position:chr2:39690837-39691156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):59, 301

               
               
               Conread position:502-806
               
               
               Cow position:chr2:12363049-12362731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:537-820
               
               
               Cow position:chr2:37789033-37788747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):26, 56

               
               
               Conread position:546-820
               
               
               Cow position:chr2:11558841-11559114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 26

               
               
               Conread position:547-820
               
               
               Cow position:chr2:32639937-32640209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):131, 7

               
               
               Conread position:547-820
               
               
               Cow position:chr2:53330787-53331068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):129, 17

               
               
               Conread position:547-820
               
               
               Cow position:chr2:63518964-63519229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):61, 15

               
               
               Conread position:549-820
               
               
               Cow position:chr2:12479271-12478996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):129, 15

               
               
               Conread position:555-821
               
               
               Cow position:chr2:13553570-13553833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):123, 13

               
               
               Conread position:564-820
               
               
               Cow position:chr2:62729520-62729775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):113, 61

               
               
               Conread position:565-820
               
               
               Cow position:chr2:780398-780142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):111, 57

               
               
               Conread position:565-820
               
               
               Cow position:chr2:42361258-42361005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):113, 60

               
               
               Conread position:565-820
               
               
               Cow position:chr2:53555503-53555768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):111, 60

               
               
               Conread position:565-828
               
               
               Cow position:chr2:43445977-43446233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:576-812
               
               
               Cow position:chr2:18242883-18242648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):102, 49

               
               
               Conread position:580-820
               
               
               Cow position:chr2:48815305-48815539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:605-820
               
               
               Cow position:chr2:34594923-34594707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):23, 29

               
               
               Conread position:607-820
               
               
               Cow position:chr2:33082914-33082701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):71, 18

               
               
               Conread position:613-820
               
               
               Cow position:chr2:314832-314626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):62, 12

               
               
               Conread position:613-820
               
               
               Cow position:chr2:72739510-72739306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:615-728
               
               
               Cow position:chr2:27081025-27081139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:94
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:624-820
               
               
               Cow position:chr2:11682215-11682411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):54, 170

               
               
               Conread position:624-828
               
               
               Cow position:chr2:5869065-5868861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):54, 76

               
               
               Conread position:628-820
               
               
               Cow position:chr2:210970-210776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:637-820
               
               
               Cow position:chr2:53005166-53004982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:644-821
               
               
               Cow position:chr2:2601792-2601964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):95, 34

               
               
               Conread position:669-820
               
               
               Cow position:chr2:23491853-23492004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):9, 45

               
               
               Conread position:222-788
               
               
               Cow position:chr20:27870374-27870959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:594
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 23

               
               
               Conread position:225-820
               
               
               Cow position:chr20:823944-824550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr20:19439087-19439699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr20:37581387-37581948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:603
               
               
               Alignm identity:391
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):74, 20

               
               
               Conread position:225-821
               
               
               Cow position:chr20:30429443-30430056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 17

               
               
               Conread position:228-676
               
               
               Cow position:chr20:19355941-19356396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 241

               
               
               Conread position:232-527
               
               
               Cow position:chr20:13678867-13678566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-731
               
               
               Cow position:chr20:12569701-12570202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:526
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-814
               
               
               Cow position:chr20:18967678-18968254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:598
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 42

               
               
               Conread position:232-820
               
               
               Cow position:chr20:5536116-5536727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr20:15293169-15293764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:419
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr20:17660563-17659961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:421
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr20:21915810-21916420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:431
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr20:23468483-23467885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr20:23800064-23800667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr20:25849642-25849047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:603
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr20:29949697-29950308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 13

               
               
               Conread position:233-820
               
               
               Cow position:chr20:15066650-15067234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:606
               
               
               Alignm identity:404
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 18

               
               
               Conread position:238-767
               
               
               Cow position:chr20:32120519-32121055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:556
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 38

               
               
               Conread position:242-523
               
               
               Cow position:chr20:14869769-14869490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):56, 153

               
               
               Conread position:242-556
               
               
               Cow position:chr20:22210236-22210542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):57, 18

               
               
               Conread position:242-820
               
               
               Cow position:chr20:9344156-9344729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:598
               
               
               Alignm identity:395
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 80

               
               
               Conread position:245-654
               
               
               Cow position:chr20:18314155-18313756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:284
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):46, 75

               
               
               Conread position:245-798
               
               
               Cow position:chr20:13499301-13499869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:581
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 132

               
               
               Conread position:245-818
               
               
               Cow position:chr20:18323745-18323170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 80

               
               
               Conread position:245-820
               
               
               Cow position:chr20:5466226-5466792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:589
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 144

               
               
               Conread position:248-615
               
               
               Cow position:chr20:5229320-5228960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:256
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):23, 11

               
               
               Conread position:248-820
               
               
               Cow position:chr20:30686767-30687368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:606
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 240

               
               
               Conread position:251-807
               
               
               Cow position:chr20:10854141-10853582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:573
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 141

               
               
               Conread position:251-820
               
               
               Cow position:chr20:28564385-28563793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:394
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 101

               
               
               Conread position:253-780
               
               
               Cow position:chr20:871808-871281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:544
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 214

               
               
               Conread position:253-820
               
               
               Cow position:chr20:13764101-13764679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:588
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 71

               
               
               Conread position:254-550
               
               
               Cow position:chr20:38917558-38917855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):46, 9

               
               
               Conread position:256-820
               
               
               Cow position:chr20:28162018-28162608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:593
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 102

               
               
               Conread position:257-507
               
               
               Cow position:chr20:32349471-32349723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):41, 169

               
               
               Conread position:263-820
               
               
               Cow position:chr20:9546878-9547429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:577
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 59

               
               
               Conread position:264-673
               
               
               Cow position:chr20:9520928-9520517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 59

               
               
               Conread position:273-828
               
               
               Cow position:chr20:20753573-20753028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:570
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 166

               
               
               Conread position:295-812
               
               
               Cow position:chr20:16178521-16177973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:554
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 25

               
               
               Conread position:297-437
               
               
               Cow position:chr20:10839477-10839341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):63, 23

               
               
               Conread position:297-588
               
               
               Cow position:chr20:27338447-27338744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:215
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):29, 20

               
               
               Conread position:297-722
               
               
               Cow position:chr20:27896779-27896363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:290
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):44, 93

               
               
               Conread position:297-807
               
               
               Cow position:chr20:21395168-21395684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:527
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 175

               
               
               Conread position:298-540
               
               
               Cow position:chr20:19340889-19341123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):74, 17

               
               
               Conread position:304-820
               
               
               Cow position:chr20:24615636-24615128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:528
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 148

               
               
               Conread position:312-620
               
               
               Cow position:chr20:33182876-33182569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:216
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):18, 103

               
               
               Conread position:325-767
               
               
               Cow position:chr20:13769144-13769576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:305
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):24, 67

               
               
               Conread position:325-807
               
               
               Cow position:chr20:12437144-12436651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 148

               
               
               Conread position:325-820
               
               
               Cow position:chr20:3306188-3306673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:319
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):53, 98

               
               
               Conread position:326-820
               
               
               Cow position:chr20:15096604-15096110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 21

               
               
               Conread position:329-572
               
               
               Cow position:chr20:42895297-42895052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):62, 41

               
               
               Conread position:336-820
               
               
               Cow position:chr20:926118-925625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:334
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):51, 118

               
               
               Conread position:345-820
               
               
               Cow position:chr20:26054402-26053907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 300

               
               
               Conread position:348-658
               
               
               Cow position:chr20:22698298-22698598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):44, 96

               
               
               Conread position:361-728
               
               
               Cow position:chr20:31609501-31609139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):31, 90

               
               
               Conread position:361-819
               
               
               Cow position:chr20:36702707-36703165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:297
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):27, 35

               
               
               Conread position:362-808
               
               
               Cow position:chr20:25333514-25333103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:307
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):28, 52

               
               
               Conread position:365-731
               
               
               Cow position:chr20:5937824-5937462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:249
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):178, 5

               
               
               Conread position:385-550
               
               
               Cow position:chr20:2009072-2008913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):83, 23

               
               
               Conread position:390-820
               
               
               Cow position:chr20:41364289-41363860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):141, 29

               
               
               Conread position:395-814
               
               
               Cow position:chr20:8972827-8972401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 81

               
               
               Conread position:404-729
               
               
               Cow position:chr20:19156392-19156072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):41, 55

               
               
               Conread position:413-821
               
               
               Cow position:chr20:13787412-13787823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:276
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):41, 57

               
               
               Conread position:440-820
               
               
               Cow position:chr20:10101618-10101239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):25, 80

               
               
               Conread position:457-829
               
               
               Cow position:chr20:9119316-9118935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:248
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):26, 172

               
               
               Conread position:461-722
               
               
               Cow position:chr20:16958220-16957971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:188
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):48, 8

               
               
               Conread position:481-820
               
               
               Cow position:chr20:35126093-35126439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 161

               
               
               Conread position:483-820
               
               
               Cow position:chr20:21717860-21718217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 154

               
               
               Conread position:505-806
               
               
               Cow position:chr20:13793487-13793795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):38, 123

               
               
               Conread position:511-801
               
               
               Cow position:chr20:31497955-31497662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):57, 69

               
               
               Conread position:511-820
               
               
               Cow position:chr20:20441488-20441168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:225
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):40, 125

               
               
               Conread position:512-751
               
               
               Cow position:chr20:30386615-30386365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):40, 124

               
               
               Conread position:547-784
               
               
               Cow position:chr20:7573055-7572819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):131, 17

               
               
               Conread position:564-781
               
               
               Cow position:chr20:32349729-32349946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):44, 70

               
               
               Conread position:565-744
               
               
               Cow position:chr20:2785283-2785105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):111, 20

               
               
               Conread position:565-820
               
               
               Cow position:chr20:12041952-12042205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:180
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):113, 60

               
               
               Conread position:565-820
               
               
               Cow position:chr20:13678315-13678057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):108, 60

               
               
               Conread position:578-820
               
               
               Cow position:chr20:25899229-25899471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:184
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):25, 36

               
               
               Conread position:599-818
               
               
               Cow position:chr20:19341389-19341607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):77, 26

               
               
               Conread position:619-806
               
               
               Cow position:chr20:19214561-19214748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):59, 6

               
               
               Conread position:638-820
               
               
               Cow position:chr20:8351737-8351556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):40, 159

               
               
               Conread position:225-518
               
               
               Cow position:chr21:27036114-27035815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-645
               
               
               Cow position:chr21:42914649-42915084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 20

               
               
               Conread position:225-680
               
               
               Cow position:chr21:12054733-12054262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 20

               
               
               Conread position:225-689
               
               
               Cow position:chr21:5012420-5011947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:327
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):75, 20

               
               
               Conread position:225-700
               
               
               Cow position:chr21:34822927-34822435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr21:11506896-11507509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:431
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr21:26635869-26635262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr21:37372523-37373121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr21:39426346-39426959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:628
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:227-818
               
               
               Cow position:chr21:2712224-2712789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:603
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 18

               
               
               Conread position:227-818
               
               
               Cow position:chr21:28256712-28257314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 18

               
               
               Conread position:229-820
               
               
               Cow position:chr21:360962-361567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 58

               
               
               Conread position:230-820
               
               
               Cow position:chr21:10567993-10568593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 15

               
               
               Conread position:232-471
               
               
               Cow position:chr21:5839971-5839722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:174
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-554
               
               
               Cow position:chr21:1778891-1779210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:214
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):66, 13

               
               
               Conread position:232-684
               
               
               Cow position:chr21:39480315-39479874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:301
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):27, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr21:2512139-2512744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr21:3780062-3780669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr21:30598188-30597575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr21:31515024-31514422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr21:33253474-33254076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr21:40270380-40269777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr21:47646624-47647227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:236-820
               
               
               Cow position:chr21:26849722-26849136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:389
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 10

               
               
               Conread position:242-700
               
               
               Cow position:chr21:21519901-21520378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 111

               
               
               Conread position:242-818
               
               
               Cow position:chr21:47942248-47942840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:603
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 17

               
               
               Conread position:243-828
               
               
               Cow position:chr21:2417518-2418107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:408
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 75

               
               
               Conread position:245-537
               
               
               Cow position:chr21:34001367-34001086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):54, 47

               
               
               Conread position:245-663
               
               
               Cow position:chr21:35145063-35145481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 155

               
               
               Conread position:245-743
               
               
               Cow position:chr21:1075367-1075877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:331
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):55, 137

               
               
               Conread position:245-820
               
               
               Cow position:chr21:34594696-34594149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:582
               
               
               Alignm identity:379
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):95, 17

               
               
               Conread position:248-757
               
               
               Cow position:chr21:28985413-28985927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:527
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 135

               
               
               Conread position:248-820
               
               
               Cow position:chr21:27284775-27285349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:586
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 237

               
               
               Conread position:248-820
               
               
               Cow position:chr21:29004208-29003625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:602
               
               
               Alignm identity:456
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):141, 44

               
               
               Conread position:248-820
               
               
               Cow position:chr21:36979609-36979007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 401

               
               
               Conread position:251-820
               
               
               Cow position:chr21:10851396-10851972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:587
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 145

               
               
               Conread position:252-679
               
               
               Cow position:chr21:45782794-45783223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:306
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):43, 70

               
               
               Conread position:253-541
               
               
               Cow position:chr21:4716327-4716625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):47, 180

               
               
               Conread position:255-820
               
               
               Cow position:chr21:147240-147815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:587
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 196

               
               
               Conread position:256-582
               
               
               Cow position:chr21:28736490-28736811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:231
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):44, 137

               
               
               Conread position:256-820
               
               
               Cow position:chr21:27069649-27069069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:586
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 232

               
               
               Conread position:256-820
               
               
               Cow position:chr21:37149351-37149875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:568
               
               
               Alignm identity:370
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):132, 53

               
               
               Conread position:259-639
               
               
               Cow position:chr21:4185243-4185623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:276
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):40, 89

               
               
               Conread position:261-446
               
               
               Cow position:chr21:21916008-21916205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:261-680
               
               
               Cow position:chr21:16870544-16870957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:266
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):113, 63

               
               
               Conread position:262-820
               
               
               Cow position:chr21:218348-218902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:578
               
               
               Alignm identity:398
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 59

               
               
               Conread position:263-820
               
               
               Cow position:chr21:5018463-5019037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:580
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 220

               
               
               Conread position:263-820
               
               
               Cow position:chr21:38023448-38024024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:587
               
               
               Alignm identity:398
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 74

               
               
               Conread position:269-820
               
               
               Cow position:chr21:1286878-1286306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:582
               
               
               Alignm identity:404
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 97

               
               
               Conread position:294-820
               
               
               Cow position:chr21:4564832-4565358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:540
               
               
               Alignm identity:400
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 127

               
               
               Conread position:297-648
               
               
               Cow position:chr21:25783213-25783581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:246
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):33, 119

               
               
               Conread position:297-792
               
               
               Cow position:chr21:27567130-27567610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 20

               
               
               Conread position:297-820
               
               
               Cow position:chr21:20743253-20742745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:531
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 69

               
               
               Conread position:298-802
               
               
               Cow position:chr21:21943221-21942711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 160

               
               
               Conread position:298-820
               
               
               Cow position:chr21:19612119-19612655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:542
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 71

               
               
               Conread position:299-703
               
               
               Cow position:chr21:2938099-2937707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:272
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):89, 64

               
               
               Conread position:323-820
               
               
               Cow position:chr21:34655231-34655725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 64

               
               
               Conread position:324-767
               
               
               Cow position:chr21:41404701-41405158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:311
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):16, 151

               
               
               Conread position:328-799
               
               
               Cow position:chr21:40080792-40081264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:314
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):62, 39

               
               
               Conread position:329-820
               
               
               Cow position:chr21:6625929-6626427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 122

               
               
               Conread position:330-828
               
               
               Cow position:chr21:13297995-13298494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 135

               
               
               Conread position:336-559
               
               
               Cow position:chr21:15278464-15278250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):76, 57

               
               
               Conread position:360-528
               
               
               Cow position:chr21:2673541-2673380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):40, 110

               
               
               Conread position:360-630
               
               
               Cow position:chr21:45786007-45785750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):23, 80

               
               
               Conread position:360-820
               
               
               Cow position:chr21:2880395-2879931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 110

               
               
               Conread position:361-820
               
               
               Cow position:chr21:13185059-13185506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:304
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):31, 59

               
               
               Conread position:365-696
               
               
               Cow position:chr21:5839760-5839416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:242
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):11, 5

               
               
               Conread position:373-820
               
               
               Cow position:chr21:405710-405268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:302
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):15, 50

               
               
               Conread position:373-820
               
               
               Cow position:chr21:26836623-26837085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 99

               
               
               Conread position:373-820
               
               
               Cow position:chr21:38801873-38802332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 107

               
               
               Conread position:374-749
               
               
               Cow position:chr21:28613765-28614152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 118

               
               
               Conread position:374-767
               
               
               Cow position:chr21:21024910-21025296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):209, 36

               
               
               Conread position:374-820
               
               
               Cow position:chr21:29257636-29257211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:306
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):19, 41

               
               
               Conread position:374-820
               
               
               Cow position:chr21:31250454-31250888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 48

               
               
               Conread position:375-820
               
               
               Cow position:chr21:24085356-24084907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 20

               
               
               Conread position:376-820
               
               
               Cow position:chr21:31639366-31639808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):183, 19

               
               
               Conread position:376-828
               
               
               Cow position:chr21:2539641-2539176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 93

               
               
               Conread position:380-762
               
               
               Cow position:chr21:34076356-34075985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:246
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):158, 50

               
               
               Conread position:385-643
               
               
               Cow position:chr21:44529775-44530031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):113, 94

               
               
               Conread position:385-820
               
               
               Cow position:chr21:468357-468794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 9

               
               
               Conread position:385-820
               
               
               Cow position:chr21:4597099-4596689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:280
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):289, 54

               
               
               Conread position:392-820
               
               
               Cow position:chr21:4182021-4182450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:295
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):160, 27

               
               
               Conread position:396-822
               
               
               Cow position:chr21:30563138-30563561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 79

               
               
               Conread position:404-828
               
               
               Cow position:chr21:30514-30931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:285
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):86, 28

               
               
               Conread position:415-820
               
               
               Cow position:chr21:997350-996942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 25

               
               
               Conread position:425-820
               
               
               Cow position:chr21:9893457-9893863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:281
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):94, 38

               
               
               Conread position:429-820
               
               
               Cow position:chr21:21139228-21139605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:257
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):113, 137

               
               
               Conread position:432-806
               
               
               Cow position:chr21:23708723-23709108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:254
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):31, 8

               
               
               Conread position:434-820
               
               
               Cow position:chr21:6414522-6414129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 41

               
               
               Conread position:440-822
               
               
               Cow position:chr21:4588501-4588118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:261
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):26, 189

               
               
               Conread position:459-820
               
               
               Cow position:chr21:25125132-25125501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:252
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):29, 178

               
               
               Conread position:470-818
               
               
               Cow position:chr21:25816018-25815668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):40, 96

               
               
               Conread position:472-820
               
               
               Cow position:chr21:21916787-21917125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:246
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):87, 20

               
               
               Conread position:488-767
               
               
               Cow position:chr21:36979878-36980152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:200
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):188, 81

               
               
               Conread position:497-821
               
               
               Cow position:chr21:18816690-18816363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):75, 135

               
               
               Conread position:500-820
               
               
               Cow position:chr21:33710713-33711044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 136

               
               
               Conread position:545-812
               
               
               Cow position:chr21:39089981-39090250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):14, 83

               
               
               Conread position:547-820
               
               
               Cow position:chr21:1688546-1688275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):129, 22

               
               
               Conread position:547-821
               
               
               Cow position:chr21:14645386-14645117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:556-808
               
               
               Cow position:chr21:21701545-21701793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):65, 8

               
               
               Conread position:564-820
               
               
               Cow position:chr21:18340817-18340566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):114, 18

               
               
               Conread position:564-820
               
               
               Cow position:chr21:44764310-44764059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):112, 21

               
               
               Conread position:579-819
               
               
               Cow position:chr21:7591312-7591550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):99, 48

               
               
               Conread position:607-812
               
               
               Cow position:chr21:27150163-27150366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):71, 6

               
               
               Conread position:633-820
               
               
               Cow position:chr21:26649005-26648819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):45, 143

               
               
               Conread position:639-812
               
               
               Cow position:chr21:23804137-23803962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:640-828
               
               
               Cow position:chr21:23651878-23652068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):38, 102

               
               
               Conread position:645-819
               
               
               Cow position:chr21:42915526-42915701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:225-597
               
               
               Cow position:chr22:7304541-7304154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-808
               
               
               Cow position:chr22:37268280-37268877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr22:538219-538832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:625
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr22:694736-695343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:623
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr22:1879919-1880528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr22:3277245-3276633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:444
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr22:11803939-11803329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:445
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr22:16202043-16202636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr22:21195377-21194773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr22:37292549-37291953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 20

               
               
               Conread position:225-821
               
               
               Cow position:chr22:18028400-18028994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-821
               
               
               Cow position:chr22:44492167-44492773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 20

               
               
               Conread position:227-692
               
               
               Cow position:chr22:36184876-36185348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 18

               
               
               Conread position:227-816
               
               
               Cow position:chr22:33351796-33352375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:602
               
               
               Alignm identity:405
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 18

               
               
               Conread position:227-818
               
               
               Cow position:chr22:326073-325455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:626
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 24

               
               
               Conread position:227-820
               
               
               Cow position:chr22:17327339-17326734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 18

               
               
               Conread position:227-820
               
               
               Cow position:chr22:44935086-44935686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 18

               
               
               Conread position:227-828
               
               
               Cow position:chr22:21035273-21034663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:623
               
               
               Alignm identity:419
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 18

               
               
               Conread position:228-821
               
               
               Cow position:chr22:44397550-44398154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 17

               
               
               Conread position:229-476
               
               
               Cow position:chr22:1323326-1323578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):70, 18

               
               
               Conread position:229-663
               
               
               Cow position:chr22:31118126-31117678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:297
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):15, 88

               
               
               Conread position:231-812
               
               
               Cow position:chr22:42992296-42992885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:604
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 16

               
               
               Conread position:231-820
               
               
               Cow position:chr22:522273-521667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 16

               
               
               Conread position:231-820
               
               
               Cow position:chr22:6332831-6333434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 14

               
               
               Conread position:232-550
               
               
               Cow position:chr22:19536673-19536996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:235
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):66, 13

               
               
               Conread position:232-676
               
               
               Cow position:chr22:283950-283534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:297
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):38, 13

               
               
               Conread position:232-692
               
               
               Cow position:chr22:18815244-18814769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr22:290581-289971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:624
               
               
               Alignm identity:468
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr22:559586-558985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:608
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr22:1519899-1519309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr22:31333926-31333325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:419
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr22:34169460-34170058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:608
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr22:36860418-36859825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr22:39468397-39467792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr22:46580598-46579994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:421
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 13

               
               
               Conread position:232-828
               
               
               Cow position:chr22:3803308-3803912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:431
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 13

               
               
               Conread position:235-560
               
               
               Cow position:chr22:38550517-38550836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):65, 10

               
               
               Conread position:241-502
               
               
               Cow position:chr22:36579150-36578877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 85

               
               
               Conread position:242-719
               
               
               Cow position:chr22:24951685-24952180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 80

               
               
               Conread position:242-722
               
               
               Cow position:chr22:45510411-45509926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 17

               
               
               Conread position:242-799
               
               
               Cow position:chr22:10304198-10303643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:582
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 20

               
               
               Conread position:242-806
               
               
               Cow position:chr22:4242493-4241930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:587
               
               
               Alignm identity:379
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):45, 54

               
               
               Conread position:242-818
               
               
               Cow position:chr22:6021795-6022372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:587
               
               
               Alignm identity:406
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 80

               
               
               Conread position:242-820
               
               
               Cow position:chr22:10908708-10908113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:603
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 80

               
               
               Conread position:242-820
               
               
               Cow position:chr22:23801073-23800514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:593
               
               
               Alignm identity:398
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 86

               
               
               Conread position:242-820
               
               
               Cow position:chr22:27308646-27308054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:602
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 224

               
               
               Conread position:243-523
               
               
               Cow position:chr22:2394859-2394573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):10, 38

               
               
               Conread position:243-820
               
               
               Cow position:chr22:15852546-15853145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:608
               
               
               Alignm identity:406
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 224

               
               
               Conread position:245-473
               
               
               Cow position:chr22:3273029-3272801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):147, 12

               
               
               Conread position:245-813
               
               
               Cow position:chr22:1268627-1268042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:598
               
               
               Alignm identity:405
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 246

               
               
               Conread position:248-527
               
               
               Cow position:chr22:46617233-46616943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):51, 230

               
               
               Conread position:250-820
               
               
               Cow position:chr22:46585427-46584845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:588
               
               
               Alignm identity:408
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 229

               
               
               Conread position:251-809
               
               
               Cow position:chr22:5937014-5936464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:578
               
               
               Alignm identity:381
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):23, 73

               
               
               Conread position:251-819
               
               
               Cow position:chr22:20239702-20239116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:595
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 71

               
               
               Conread position:252-616
               
               
               Cow position:chr22:8648596-8648233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:241
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):19, 196

               
               
               Conread position:253-779
               
               
               Cow position:chr22:44606534-44606019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:536
               
               
               Alignm identity:347
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):47, 100

               
               
               Conread position:253-801
               
               
               Cow position:chr22:8737194-8736645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:572
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 48

               
               
               Conread position:256-820
               
               
               Cow position:chr22:19142548-19141965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 66

               
               
               Conread position:259-550
               
               
               Cow position:chr22:8120933-8120645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):40, 202

               
               
               Conread position:259-820
               
               
               Cow position:chr22:44368325-44367758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:582
               
               
               Alignm identity:406
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 63

               
               
               Conread position:261-633
               
               
               Cow position:chr22:6501987-6501609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:264
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):39, 192

               
               
               Conread position:261-820
               
               
               Cow position:chr22:44348706-44348144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:576
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 64

               
               
               Conread position:262-740
               
               
               Cow position:chr22:45582068-45582553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 199

               
               
               Conread position:262-807
               
               
               Cow position:chr22:39689639-39690165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:558
               
               
               Alignm identity:364
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):36, 60

               
               
               Conread position:262-820
               
               
               Cow position:chr22:13773686-13774238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:570
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 39

               
               
               Conread position:266-417
               
               
               Cow position:chr22:26536209-26536371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:297-431
               
               
               Cow position:chr22:3216969-3216836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):96, 23

               
               
               Conread position:297-812
               
               
               Cow position:chr22:316707-317197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 23

               
               
               Conread position:297-818
               
               
               Cow position:chr22:13547582-13547060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:538
               
               
               Alignm identity:351
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):33, 71

               
               
               Conread position:297-820
               
               
               Cow position:chr22:46614493-46615026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:546
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 20

               
               
               Conread position:301-820
               
               
               Cow position:chr22:35670471-35669947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:537
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 140

               
               
               Conread position:303-828
               
               
               Cow position:chr22:1281523-1281003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:540
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 14

               
               
               Conread position:320-818
               
               
               Cow position:chr22:28867676-28867204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 151

               
               
               Conread position:324-502
               
               
               Cow position:chr22:36589742-36589567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):67, 93

               
               
               Conread position:329-806
               
               
               Cow position:chr22:19243621-19244090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:331
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):38, 123

               
               
               Conread position:329-819
               
               
               Cow position:chr22:30128806-30129301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 146

               
               
               Conread position:329-819
               
               
               Cow position:chr22:30146455-30146950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 146

               
               
               Conread position:337-820
               
               
               Cow position:chr22:44518398-44517916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 40

               
               
               Conread position:340-799
               
               
               Cow position:chr22:3305362-3304901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):229, 129

               
               
               Conread position:354-528
               
               
               Cow position:chr22:37134328-37134493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:360-820
               
               
               Cow position:chr22:296708-297174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 93

               
               
               Conread position:360-820
               
               
               Cow position:chr22:35912189-35911734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:298
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):32, 113

               
               
               Conread position:364-821
               
               
               Cow position:chr22:96104-95674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:322
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):7, 53

               
               
               Conread position:364-822
               
               
               Cow position:chr22:21590677-21591148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 110

               
               
               Conread position:373-794
               
               
               Cow position:chr22:8664691-8664285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:288
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):14, 37

               
               
               Conread position:373-818
               
               
               Cow position:chr22:13673543-13673098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 87

               
               
               Conread position:374-751
               
               
               Cow position:chr22:41241493-41241884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 92

               
               
               Conread position:374-801
               
               
               Cow position:chr22:19585720-19585292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 133

               
               
               Conread position:375-818
               
               
               Cow position:chr22:29011991-29011553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 44

               
               
               Conread position:376-646
               
               
               Cow position:chr22:44458223-44458496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:210
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):175, 19

               
               
               Conread position:376-820
               
               
               Cow position:chr22:15352152-15352594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 74

               
               
               Conread position:380-820
               
               
               Cow position:chr22:4066263-4065829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:306
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):179, 21

               
               
               Conread position:383-820
               
               
               Cow position:chr22:13766647-13767087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 18

               
               
               Conread position:389-716
               
               
               Cow position:chr22:44478046-44478362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:230
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):180, 32

               
               
               Conread position:396-767
               
               
               Cow position:chr22:3272806-3272417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):163, 73

               
               
               Conread position:404-786
               
               
               Cow position:chr22:39725063-39724687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:252
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):57, 17

               
               
               Conread position:404-820
               
               
               Cow position:chr22:30677412-30676990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 29

               
               
               Conread position:420-820
               
               
               Cow position:chr22:41474392-41473982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 102

               
               
               Conread position:425-654
               
               
               Cow position:chr22:9045595-9045824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):118, 50

               
               
               Conread position:428-666
               
               
               Cow position:chr22:44366781-44366538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):129, 47

               
               
               Conread position:435-821
               
               
               Cow position:chr22:11807411-11807023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 54

               
               
               Conread position:444-751
               
               
               Cow position:chr22:36270520-36270834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:226
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):106, 12

               
               
               Conread position:454-821
               
               
               Cow position:chr22:870307-869935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:248
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):67, 12

               
               
               Conread position:458-829
               
               
               Cow position:chr22:40745733-40746084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:241
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):117, 29

               
               
               Conread position:469-812
               
               
               Cow position:chr22:14824327-14823983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:239
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):108, 20

               
               
               Conread position:469-814
               
               
               Cow position:chr22:4941547-4941871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:471-812
               
               
               Cow position:chr22:30653881-30654247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:244
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):29, 172

               
               
               Conread position:472-788
               
               
               Cow position:chr22:42760155-42760453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:484-820
               
               
               Cow position:chr22:15310564-15310234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):6, 152

               
               
               Conread position:492-820
               
               
               Cow position:chr22:45014736-45015069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:243
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):65, 137

               
               
               Conread position:498-821
               
               
               Cow position:chr22:10782498-10782819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:222
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):64, 12

               
               
               Conread position:502-821
               
               
               Cow position:chr22:38960501-38960832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:225
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):52, 127

               
               
               Conread position:510-829
               
               
               Cow position:chr22:23752303-23751978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:230
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):49, 125

               
               
               Conread position:516-814
               
               
               Cow position:chr22:15867555-15867861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):37, 116

               
               
               Conread position:547-797
               
               
               Cow position:chr22:2718452-2718202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):51, 17

               
               
               Conread position:554-820
               
               
               Cow position:chr22:15955578-15955308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:186
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):23, 250

               
               
               Conread position:563-820
               
               
               Cow position:chr22:29499007-29499264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):115, 62

               
               
               Conread position:564-820
               
               
               Cow position:chr22:32283214-32282958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 61

               
               
               Conread position:565-820
               
               
               Cow position:chr22:2563283-2563035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):113, 27

               
               
               Conread position:565-820
               
               
               Cow position:chr22:5313753-5314012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:565-820
               
               
               Cow position:chr22:37141989-37142230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):113, 11

               
               
               Conread position:565-828
               
               
               Cow position:chr22:1323622-1323882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):113, 57

               
               
               Conread position:566-828
               
               
               Cow position:chr22:34601063-34601318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:179
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):110, 58

               
               
               Conread position:579-828
               
               
               Cow position:chr22:4228962-4228713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):97, 49

               
               
               Conread position:592-820
               
               
               Cow position:chr22:34609173-34609414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):40, 5

               
               
               Conread position:595-814
               
               
               Cow position:chr22:8120283-8120064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):83, 32

               
               
               Conread position:596-818
               
               
               Cow position:chr22:46563165-46563390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:159
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):63, 142

               
               
               Conread position:601-812
               
               
               Cow position:chr22:46422369-46422162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):76, 10

               
               
               Conread position:606-820
               
               
               Cow position:chr22:9273881-9274090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):69, 95

               
               
               Conread position:607-820
               
               
               Cow position:chr22:18605292-18605077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:608-820
               
               
               Cow position:chr22:37135274-37135485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):70, 162

               
               
               Conread position:615-728
               
               
               Cow position:chr22:35917612-35917498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:618-820
               
               
               Cow position:chr22:28783636-28783837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):60, 7

               
               
               Conread position:619-821
               
               
               Cow position:chr22:14988235-14988034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):59, 6

               
               
               Conread position:635-809
               
               
               Cow position:chr22:29352911-29353086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:639-820
               
               
               Cow position:chr22:48274797-48274621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):39, 55

               
               
               Conread position:641-828
               
               
               Cow position:chr22:8880641-8880829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:646-820
               
               
               Cow position:chr22:21336503-21336678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:225-527
               
               
               Cow position:chr23:14923186-14922878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:227
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-588
               
               
               Cow position:chr23:3707237-3707602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:252
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):28, 20

               
               
               Conread position:225-628
               
               
               Cow position:chr23:14963933-14963536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:251
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):105, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr23:965380-964775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr23:28218531-28219154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:447
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr23:41142117-41141507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:442
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:227-818
               
               
               Cow position:chr23:2794140-2793553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 18

               
               
               Conread position:227-820
               
               
               Cow position:chr23:22146196-22145586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 18

               
               
               Conread position:227-820
               
               
               Cow position:chr23:31648909-31648311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 138

               
               
               Conread position:228-666
               
               
               Cow position:chr23:19949476-19949022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 125

               
               
               Conread position:228-826
               
               
               Cow position:chr23:29451235-29450602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:641
               
               
               Alignm identity:407
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):72, 18

               
               
               Conread position:230-645
               
               
               Cow position:chr23:11077066-11076644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 234

               
               
               Conread position:231-819
               
               
               Cow position:chr23:16498119-16497534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 16

               
               
               Conread position:231-820
               
               
               Cow position:chr23:15178194-15178783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:601
               
               
               Alignm identity:421
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 11

               
               
               Conread position:231-821
               
               
               Cow position:chr23:4889806-4890403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 14

               
               
               Conread position:232-467
               
               
               Cow position:chr23:1957005-1957242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):67, 13

               
               
               Conread position:232-561
               
               
               Cow position:chr23:27400642-27400973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-786
               
               
               Cow position:chr23:2025960-2025396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:576
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr23:3879965-3879366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:608
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr23:4818142-4818743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr23:11779905-11780499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:604
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr23:15526687-15527300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:442
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr23:19490664-19491271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr23:36030257-36029664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:606
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 13

               
               
               Conread position:232-828
               
               
               Cow position:chr23:14972855-14972227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:635
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:233-700
               
               
               Cow position:chr23:29402600-29402130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:335
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):39, 26

               
               
               Conread position:234-692
               
               
               Cow position:chr23:2342211-2342670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:313
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):75, 11

               
               
               Conread position:237-821
               
               
               Cow position:chr23:618345-617755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:396
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 14

               
               
               Conread position:242-666
               
               
               Cow position:chr23:14777830-14777402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:303
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):56, 184

               
               
               Conread position:242-804
               
               
               Cow position:chr23:13512237-13512781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:576
               
               
               Alignm identity:379
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):56, 9

               
               
               Conread position:242-818
               
               
               Cow position:chr23:14262992-14263566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:393
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 252

               
               
               Conread position:242-820
               
               
               Cow position:chr23:2759018-2759618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:606
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 245

               
               
               Conread position:245-821
               
               
               Cow position:chr23:20155081-20154506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:593
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 80

               
               
               Conread position:245-828
               
               
               Cow position:chr23:30237400-30238019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 317

               
               
               Conread position:249-559
               
               
               Cow position:chr23:13510757-13511065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 151

               
               
               Conread position:251-514
               
               
               Cow position:chr23:19451285-19451550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):50, 148

               
               
               Conread position:252-788
               
               
               Cow position:chr23:4513606-4514171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:570
               
               
               Alignm identity:389
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 238

               
               
               Conread position:258-670
               
               
               Cow position:chr23:2576558-2576956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:282
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):42, 92

               
               
               Conread position:259-462
               
               
               Cow position:chr23:25682809-25682602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):41, 63

               
               
               Conread position:261-682
               
               
               Cow position:chr23:2718459-2718895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 106

               
               
               Conread position:262-820
               
               
               Cow position:chr23:11714722-11714146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:582
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 224

               
               
               Conread position:262-820
               
               
               Cow position:chr23:15876420-15875848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:580
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 203

               
               
               Conread position:262-820
               
               
               Cow position:chr23:16054927-16055491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:582
               
               
               Alignm identity:406
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 60

               
               
               Conread position:263-781
               
               
               Cow position:chr23:21822129-21821638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:526
               
               
               Alignm identity:343
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):37, 110

               
               
               Conread position:297-686
               
               
               Cow position:chr23:21243550-21243151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:280
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):44, 73

               
               
               Conread position:297-743
               
               
               Cow position:chr23:16613987-16613545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 20

               
               
               Conread position:297-745
               
               
               Cow position:chr23:38691677-38692136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 164

               
               
               Conread position:298-821
               
               
               Cow position:chr23:1022771-1022238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:542
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 19

               
               
               Conread position:299-820
               
               
               Cow position:chr23:5873386-5872852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:541
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 18

               
               
               Conread position:323-816
               
               
               Cow position:chr23:2440043-2439573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):201, 65

               
               
               Conread position:325-812
               
               
               Cow position:chr23:948615-948111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:323
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):67, 148

               
               
               Conread position:325-820
               
               
               Cow position:chr23:7314123-7314630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 155

               
               
               Conread position:329-818
               
               
               Cow position:chr23:1012577-1012104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:326
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):12, 39

               
               
               Conread position:340-761
               
               
               Cow position:chr23:7044944-7044538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 83

               
               
               Conread position:340-820
               
               
               Cow position:chr23:30563653-30564121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:313
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):74, 52

               
               
               Conread position:347-767
               
               
               Cow position:chr23:8287197-8287607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:289
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):45, 111

               
               
               Conread position:360-820
               
               
               Cow position:chr23:23172029-23172496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 69

               
               
               Conread position:376-527
               
               
               Cow position:chr23:22942720-22942575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):12, 25

               
               
               Conread position:376-788
               
               
               Cow position:chr23:22167916-22168328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 76

               
               
               Conread position:376-820
               
               
               Cow position:chr23:4639320-4638878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 25

               
               
               Conread position:376-820
               
               
               Cow position:chr23:15218604-15218168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 64

               
               
               Conread position:379-603
               
               
               Cow position:chr23:32884101-32883879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):170, 90

               
               
               Conread position:388-818
               
               
               Cow position:chr23:17878476-17878041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 13

               
               
               Conread position:391-692
               
               
               Cow position:chr23:38579005-38579288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):246, 61

               
               
               Conread position:406-818
               
               
               Cow position:chr23:15660457-15660060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:277
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):25, 50

               
               
               Conread position:458-818
               
               
               Cow position:chr23:26838170-26838547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 29

               
               
               Conread position:459-820
               
               
               Cow position:chr23:1957520-1957880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:266
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):92, 16

               
               
               Conread position:459-820
               
               
               Cow position:chr23:31164157-31164521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:255
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):85, 16

               
               
               Conread position:492-820
               
               
               Cow position:chr23:32351381-32351042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 144

               
               
               Conread position:497-820
               
               
               Cow position:chr23:28304301-28304635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 139

               
               
               Conread position:507-723
               
               
               Cow position:chr23:6220548-6220769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):52, 18

               
               
               Conread position:546-820
               
               
               Cow position:chr23:14961505-14961232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):130, 26

               
               
               Conread position:547-752
               
               
               Cow position:chr23:4435100-4435305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):131, 25

               
               
               Conread position:556-828
               
               
               Cow position:chr23:35274103-35274372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):125, 13

               
               
               Conread position:564-820
               
               
               Cow position:chr23:608179-608432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:190
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):114, 61

               
               
               Conread position:612-809
               
               
               Cow position:chr23:23283037-23283236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):66, 13

               
               
               Conread position:626-820
               
               
               Cow position:chr23:29478737-29478925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):50, 108

               
               
               Conread position:635-808
               
               
               Cow position:chr23:24108282-24108459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):43, 28

               
               
               Conread position:639-820
               
               
               Cow position:chr23:26158903-26158717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):128, 41

               
               
               Conread position:641-820
               
               
               Cow position:chr23:11074938-11074755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:648-820
               
               
               Cow position:chr23:11931709-11931880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:224-795
               
               
               Cow position:chr24:6130024-6130593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:589
               
               
               Alignm identity:397
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 21

               
               
               Conread position:225-590
               
               
               Cow position:chr24:29305115-29304747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:261
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):73, 21

               
               
               Conread position:225-645
               
               
               Cow position:chr24:9187544-9187108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-692
               
               
               Cow position:chr24:11152039-11151555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-717
               
               
               Cow position:chr24:6435681-6436190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-767
               
               
               Cow position:chr24:5992027-5991469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:566
               
               
               Alignm identity:394
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 20

               
               
               Conread position:225-812
               
               
               Cow position:chr24:44018706-44019310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-819
               
               
               Cow position:chr24:23504664-23504051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:438
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr24:6023907-6023279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:637
               
               
               Alignm identity:438
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 21

               
               
               Conread position:225-820
               
               
               Cow position:chr24:7062740-7063349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:227-692
               
               
               Cow position:chr24:6142288-6142751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:314
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):71, 20

               
               
               Conread position:227-821
               
               
               Cow position:chr24:33934589-33935198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 18

               
               
               Conread position:228-815
               
               
               Cow position:chr24:19702703-19703291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:602
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 31

               
               
               Conread position:228-818
               
               
               Cow position:chr24:17321914-17322483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:415
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 94

               
               
               Conread position:228-820
               
               
               Cow position:chr24:9090852-9090251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:421
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 95

               
               
               Conread position:231-820
               
               
               Cow position:chr24:147404-146800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:431
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 14

               
               
               Conread position:232-749
               
               
               Cow position:chr24:6407243-6407771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:539
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-809
               
               
               Cow position:chr24:6337594-6338180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:602
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-819
               
               
               Cow position:chr24:12087414-12088008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-819
               
               
               Cow position:chr24:16561120-16560502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:630
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 258

               
               
               Conread position:232-820
               
               
               Cow position:chr24:13233463-13234057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr24:19834602-19835216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr24:29188498-29189095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-828
               
               
               Cow position:chr24:12150106-12149472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:637
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:234-817
               
               
               Cow position:chr24:38638744-38639335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 25

               
               
               Conread position:235-820
               
               
               Cow position:chr24:6353352-6353944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:415
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 99

               
               
               Conread position:237-820
               
               
               Cow position:chr24:17409689-17410268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:595
               
               
               Alignm identity:405
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 88

               
               
               Conread position:238-820
               
               
               Cow position:chr24:35869349-35868780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:591
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 7

               
               
               Conread position:242-550
               
               
               Cow position:chr24:1450643-1450934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):105, 49

               
               
               Conread position:242-643
               
               
               Cow position:chr24:29408489-29408074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:270
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):58, 184

               
               
               Conread position:242-646
               
               
               Cow position:chr24:35840848-35840455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 67

               
               
               Conread position:242-736
               
               
               Cow position:chr24:12699603-12699098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 83

               
               
               Conread position:242-820
               
               
               Cow position:chr24:7089753-7089191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:592
               
               
               Alignm identity:397
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 83

               
               
               Conread position:242-820
               
               
               Cow position:chr24:13044427-13043818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:438
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 257

               
               
               Conread position:242-820
               
               
               Cow position:chr24:37199675-37199108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:589
               
               
               Alignm identity:396
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 27

               
               
               Conread position:245-635
               
               
               Cow position:chr24:12163162-12163558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:276
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):52, 77

               
               
               Conread position:248-820
               
               
               Cow position:chr24:4414313-4413746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:594
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 123

               
               
               Conread position:248-820
               
               
               Cow position:chr24:38585899-38585326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:587
               
               
               Alignm identity:405
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 77

               
               
               Conread position:248-822
               
               
               Cow position:chr24:6659276-6658683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:598
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 208

               
               
               Conread position:251-522
               
               
               Cow position:chr24:19640904-19641185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):49, 243

               
               
               Conread position:251-820
               
               
               Cow position:chr24:13189410-13189973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:583
               
               
               Alignm identity:406
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 71

               
               
               Conread position:254-761
               
               
               Cow position:chr24:17370746-17370273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:334
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):319, 48

               
               
               Conread position:255-783
               
               
               Cow position:chr24:14871093-14870561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:552
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 71

               
               
               Conread position:255-820
               
               
               Cow position:chr24:12238519-12239099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:593
               
               
               Alignm identity:393
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 62

               
               
               Conread position:261-683
               
               
               Cow position:chr24:14389300-14388872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:301
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):38, 61

               
               
               Conread position:261-820
               
               
               Cow position:chr24:14383400-14382820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:588
               
               
               Alignm identity:397
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 216

               
               
               Conread position:297-638
               
               
               Cow position:chr24:25437569-25437905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:242
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):33, 97

               
               
               Conread position:297-724
               
               
               Cow position:chr24:14305103-14305521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:296
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):39, 141

               
               
               Conread position:297-820
               
               
               Cow position:chr24:9545329-9545865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:543
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 178

               
               
               Conread position:297-828
               
               
               Cow position:chr24:13179741-13179204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:548
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 23

               
               
               Conread position:298-692
               
               
               Cow position:chr24:16097802-16098204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:277
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):47, 22

               
               
               Conread position:299-549
               
               
               Cow position:chr24:10222893-10222646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):28, 18

               
               
               Conread position:299-820
               
               
               Cow position:chr24:36298713-36299219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:535
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 129

               
               
               Conread position:324-475
               
               
               Cow position:chr24:11938616-11938463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:324-633
               
               
               Cow position:chr24:16875904-16875584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):63, 136

               
               
               Conread position:324-795
               
               
               Cow position:chr24:17279086-17278601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:311
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):25, 152

               
               
               Conread position:324-818
               
               
               Cow position:chr24:40470063-40469563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:341
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):16, 44

               
               
               Conread position:324-819
               
               
               Cow position:chr24:6344245-6344726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:325
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):17, 44

               
               
               Conread position:324-821
               
               
               Cow position:chr24:29352539-29352047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:328
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):17, 87

               
               
               Conread position:325-820
               
               
               Cow position:chr24:6324048-6323541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 129

               
               
               Conread position:325-828
               
               
               Cow position:chr24:12205028-12204527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 55

               
               
               Conread position:334-819
               
               
               Cow position:chr24:32847334-32847832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:334
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):35, 41

               
               
               Conread position:340-744
               
               
               Cow position:chr24:38289441-38289044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 79

               
               
               Conread position:348-820
               
               
               Cow position:chr24:6668406-6667949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:286
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):160, 66

               
               
               Conread position:360-781
               
               
               Cow position:chr24:8606156-8606591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 92

               
               
               Conread position:360-788
               
               
               Cow position:chr24:310206-310645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 119

               
               
               Conread position:365-818
               
               
               Cow position:chr24:12334382-12333931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 32

               
               
               Conread position:369-814
               
               
               Cow position:chr24:42584400-42583967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:314
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):132, 71

               
               
               Conread position:373-781
               
               
               Cow position:chr24:9435585-9435179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:274
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):10, 98

               
               
               Conread position:373-820
               
               
               Cow position:chr24:22972415-22972874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 27

               
               
               Conread position:376-821
               
               
               Cow position:chr24:13512413-13511983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:287
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):12, 21

               
               
               Conread position:377-640
               
               
               Cow position:chr24:14277854-14277600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:196
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):180, 37

               
               
               Conread position:386-623
               
               
               Cow position:chr24:40468423-40468660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):164, 8

               
               
               Conread position:401-692
               
               
               Cow position:chr24:16083397-16083099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:221
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):151, 74

               
               
               Conread position:406-820
               
               
               Cow position:chr24:28032011-28031618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:267
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):151, 63

               
               
               Conread position:414-820
               
               
               Cow position:chr24:14755395-14755808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 61

               
               
               Conread position:435-820
               
               
               Cow position:chr24:5776988-5776592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:269
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):15, 32

               
               
               Conread position:436-767
               
               
               Cow position:chr24:6676004-6676339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:229
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):69, 33

               
               
               Conread position:461-819
               
               
               Cow position:chr24:6036431-6036797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 28

               
               
               Conread position:469-776
               
               
               Cow position:chr24:36723270-36723593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):21, 164

               
               
               Conread position:471-814
               
               
               Cow position:chr24:12569480-12569821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:246
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):78, 9

               
               
               Conread position:471-828
               
               
               Cow position:chr24:12108116-12107748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):44, 18

               
               
               Conread position:496-821
               
               
               Cow position:chr24:41003961-41004296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 139

               
               
               Conread position:498-820
               
               
               Cow position:chr24:6963274-6962941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 138

               
               
               Conread position:499-820
               
               
               Cow position:chr24:36558073-36557761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:224
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):58, 110

               
               
               Conread position:510-819
               
               
               Cow position:chr24:6060920-6061217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:222
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):17, 10

               
               
               Conread position:516-821
               
               
               Cow position:chr24:8150822-8150510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):94, 45

               
               
               Conread position:542-818
               
               
               Cow position:chr24:19469076-19468801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):35, 73

               
               
               Conread position:546-820
               
               
               Cow position:chr24:20286376-20286103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:194
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):132, 18

               
               
               Conread position:564-784
               
               
               Cow position:chr24:17957992-17957771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:173
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):114, 19

               
               
               Conread position:609-820
               
               
               Cow position:chr24:6272994-6272782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:611-805
               
               
               Cow position:chr24:35840293-35840093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):65, 19

               
               
               Conread position:614-820
               
               
               Cow position:chr24:1493165-1493366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):62, 15

               
               
               Conread position:614-821
               
               
               Cow position:chr24:13086879-13086673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):114, 11

               
               
               Conread position:623-828
               
               
               Cow position:chr24:12163843-12164049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):55, 168

               
               
               Conread position:625-819
               
               
               Cow position:chr24:25184820-25185013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):165, 0

               
               
               Conread position:636-820
               
               
               Cow position:chr24:25438226-25438411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:677-820
               
               
               Cow position:chr24:19183831-19183974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):100, 11

               
               
               Conread position:225-692
               
               
               Cow position:chr25:18192601-18192116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-800
               
               
               Cow position:chr25:11041527-11042099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:593
               
               
               Alignm identity:403
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr25:13693508-13692896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr25:17588396-17587796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:442
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 20

               
               
               Conread position:227-550
               
               
               Cow position:chr25:24659050-24658722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 18

               
               
               Conread position:227-820
               
               
               Cow position:chr25:11931616-11931012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:419
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 18

               
               
               Conread position:227-822
               
               
               Cow position:chr25:17655602-17656175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:608
               
               
               Alignm identity:397
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 95

               
               
               Conread position:227-828
               
               
               Cow position:chr25:18177861-18178472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 18

               
               
               Conread position:230-820
               
               
               Cow position:chr25:34345838-34345233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 15

               
               
               Conread position:231-795
               
               
               Cow position:chr25:18251746-18251190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:577
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 14

               
               
               Conread position:231-798
               
               
               Cow position:chr25:18305317-18305888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:590
               
               
               Alignm identity:386
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 16

               
               
               Conread position:232-788
               
               
               Cow position:chr25:22148707-22149281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:583
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr25:18888574-18887972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr25:27021418-27020826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 13

               
               
               Conread position:232-821
               
               
               Cow position:chr25:20630796-20631397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:235-801
               
               
               Cow position:chr25:18273598-18273032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:582
               
               
               Alignm identity:404
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 12

               
               
               Conread position:238-829
               
               
               Cow position:chr25:18486377-18485786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 82

               
               
               Conread position:242-538
               
               
               Cow position:chr25:32902093-32902394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):64, 219

               
               
               Conread position:242-692
               
               
               Cow position:chr25:20774194-20773727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 79

               
               
               Conread position:245-818
               
               
               Cow position:chr25:13782214-13782817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:606
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 33

               
               
               Conread position:245-820
               
               
               Cow position:chr25:12941493-12940901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 242

               
               
               Conread position:245-820
               
               
               Cow position:chr25:25507882-25508479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 166

               
               
               Conread position:245-821
               
               
               Cow position:chr25:14957270-14956716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:403
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):55, 77

               
               
               Conread position:247-820
               
               
               Cow position:chr25:19921714-19922312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 8

               
               
               Conread position:248-793
               
               
               Cow position:chr25:17559378-17558820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:566
               
               
               Alignm identity:388
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 105

               
               
               Conread position:253-677
               
               
               Cow position:chr25:13454394-13453953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 135

               
               
               Conread position:255-820
               
               
               Cow position:chr25:13062520-13061938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:589
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 196

               
               
               Conread position:262-740
               
               
               Cow position:chr25:30266690-30267182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 60

               
               
               Conread position:262-808
               
               
               Cow position:chr25:24216273-24215737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:560
               
               
               Alignm identity:364
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):53, 40

               
               
               Conread position:263-820
               
               
               Cow position:chr25:36636483-36635937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:565
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 73

               
               
               Conread position:297-723
               
               
               Cow position:chr25:21902274-21902710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 20

               
               
               Conread position:298-820
               
               
               Cow position:chr25:27523359-27522854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:529
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 19

               
               
               Conread position:308-715
               
               
               Cow position:chr25:9392883-9393301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 12

               
               
               Conread position:325-820
               
               
               Cow position:chr25:4533237-4532738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:350
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):23, 93

               
               
               Conread position:325-820
               
               
               Cow position:chr25:12757865-12757346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 320

               
               
               Conread position:326-735
               
               
               Cow position:chr25:25543185-25543594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:281
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):15, 133

               
               
               Conread position:326-807
               
               
               Cow position:chr25:11830841-11830353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:326
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):15, 49

               
               
               Conread position:340-820
               
               
               Cow position:chr25:23847913-23847465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:314
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):268, 52

               
               
               Conread position:367-820
               
               
               Cow position:chr25:19339289-19338828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 62

               
               
               Conread position:373-723
               
               
               Cow position:chr25:13794112-13793757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):14, 66

               
               
               Conread position:374-821
               
               
               Cow position:chr25:30149391-30148955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 11

               
               
               Conread position:376-746
               
               
               Cow position:chr25:13999084-13999450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:247
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):49, 9

               
               
               Conread position:385-821
               
               
               Cow position:chr25:19998015-19998443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:283
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):7, 50

               
               
               Conread position:394-820
               
               
               Cow position:chr25:20346642-20346211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 36

               
               
               Conread position:415-820
               
               
               Cow position:chr25:18450703-18451107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:271
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):129, 52

               
               
               Conread position:425-623
               
               
               Cow position:chr25:33614217-33614422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):127, 50

               
               
               Conread position:444-828
               
               
               Cow position:chr25:13772141-13771766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 30

               
               
               Conread position:456-820
               
               
               Cow position:chr25:16925004-16924631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 13

               
               
               Conread position:472-652
               
               
               Cow position:chr25:32153006-32153182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):71, 20

               
               
               Conread position:473-816
               
               
               Cow position:chr25:10944171-10943819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:234
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):68, 14

               
               
               Conread position:488-820
               
               
               Cow position:chr25:32580951-32581294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 148

               
               
               Conread position:501-746
               
               
               Cow position:chr25:21563118-21562872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:175
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):48, 72

               
               
               Conread position:504-820
               
               
               Cow position:chr25:19427889-19427582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):172, 125

               
               
               Conread position:504-820
               
               
               Cow position:chr25:35588882-35588564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):35, 124

               
               
               Conread position:538-819
               
               
               Cow position:chr25:20097902-20098185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):39, 22

               
               
               Conread position:555-815
               
               
               Cow position:chr25:2368504-2368766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:196
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):22, 7

               
               
               Conread position:599-821
               
               
               Cow position:chr25:33260775-33260996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):29, 15

               
               
               Conread position:607-821
               
               
               Cow position:chr25:19018623-19018408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):67, 7

               
               
               Conread position:619-819
               
               
               Cow position:chr25:29358052-29358252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:619-820
               
               
               Cow position:chr25:35627877-35627676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):59, 6

               
               
               Conread position:622-820
               
               
               Cow position:chr25:25288547-25288746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:645-808
               
               
               Cow position:chr25:40140099-40139935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:225-689
               
               
               Cow position:chr26:8920011-8920492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr26:3029668-3029056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr26:18853399-18853995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:231-753
               
               
               Cow position:chr26:14507165-14506605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:566
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 14

               
               
               Conread position:232-781
               
               
               Cow position:chr26:17325254-17325822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:577
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 13

               
               
               Conread position:232-808
               
               
               Cow position:chr26:19350335-19349740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:603
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr26:6848257-6847676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:603
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr26:14895127-14895728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-828
               
               
               Cow position:chr26:34012858-34013448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:608
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 13

               
               
               Conread position:233-483
               
               
               Cow position:chr26:1087258-1086997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):64, 247

               
               
               Conread position:235-812
               
               
               Cow position:chr26:11287455-11288030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:598
               
               
               Alignm identity:374
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):65, 24

               
               
               Conread position:235-820
               
               
               Cow position:chr26:6805875-6805285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:602
               
               
               Alignm identity:402
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 12

               
               
               Conread position:236-821
               
               
               Cow position:chr26:30783948-30784529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:604
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 9

               
               
               Conread position:237-557
               
               
               Cow position:chr26:12666681-12666987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):72, 139

               
               
               Conread position:242-490
               
               
               Cow position:chr26:8086363-8086609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):88, 60

               
               
               Conread position:242-656
               
               
               Cow position:chr26:13195246-13194840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:272
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):54, 69

               
               
               Conread position:242-820
               
               
               Cow position:chr26:12587366-12586771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:603
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 69

               
               
               Conread position:242-820
               
               
               Cow position:chr26:30588173-30587589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:598
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 143

               
               
               Conread position:245-812
               
               
               Cow position:chr26:5676305-5676906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:604
               
               
               Alignm identity:403
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 14

               
               
               Conread position:245-818
               
               
               Cow position:chr26:2199830-2200409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 77

               
               
               Conread position:245-820
               
               
               Cow position:chr26:4328248-4327664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:601
               
               
               Alignm identity:397
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 76

               
               
               Conread position:248-643
               
               
               Cow position:chr26:9561591-9561178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 236

               
               
               Conread position:248-820
               
               
               Cow position:chr26:8871030-8871616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:596
               
               
               Alignm identity:419
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 13

               
               
               Conread position:248-820
               
               
               Cow position:chr26:17395711-17395133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:593
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 214

               
               
               Conread position:251-463
               
               
               Cow position:chr26:5218983-5218766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):49, 74

               
               
               Conread position:251-729
               
               
               Cow position:chr26:8646049-8646520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:314
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):13, 8

               
               
               Conread position:259-820
               
               
               Cow position:chr26:21825474-21824901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:593
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 63

               
               
               Conread position:262-828
               
               
               Cow position:chr26:4603940-4603374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:589
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 60

               
               
               Conread position:297-820
               
               
               Cow position:chr26:35336929-35336408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:539
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 15

               
               
               Conread position:299-698
               
               
               Cow position:chr26:1627245-1627641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:248
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):93, 33

               
               
               Conread position:324-767
               
               
               Cow position:chr26:19205158-19205601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:285
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):226, 27

               
               
               Conread position:328-814
               
               
               Cow position:chr26:25035764-25036248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:320
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):62, 129

               
               
               Conread position:332-820
               
               
               Cow position:chr26:8282529-8282033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 57

               
               
               Conread position:339-800
               
               
               Cow position:chr26:21419622-21419175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:308
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):35, 25

               
               
               Conread position:340-654
               
               
               Cow position:chr26:1086939-1086616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:234
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):48, 133

               
               
               Conread position:348-820
               
               
               Cow position:chr26:26271021-26271480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 38

               
               
               Conread position:360-788
               
               
               Cow position:chr26:35369248-35369687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 119

               
               
               Conread position:360-815
               
               
               Cow position:chr26:28373917-28373450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 119

               
               
               Conread position:365-660
               
               
               Cow position:chr26:31840680-31840980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:202
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):16, 95

               
               
               Conread position:373-744
               
               
               Cow position:chr26:30083802-30084189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:270
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):14, 98

               
               
               Conread position:373-820
               
               
               Cow position:chr26:11036743-11037185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 71

               
               
               Conread position:376-820
               
               
               Cow position:chr26:16478658-16479104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 96

               
               
               Conread position:379-820
               
               
               Cow position:chr26:16856768-16856324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:294
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):28, 90

               
               
               Conread position:384-732
               
               
               Cow position:chr26:12827287-12827636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:248
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):191, 85

               
               
               Conread position:401-746
               
               
               Cow position:chr26:35252726-35252383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:246
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):125, 50

               
               
               Conread position:413-820
               
               
               Cow position:chr26:33148506-33148092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 62

               
               
               Conread position:414-744
               
               
               Cow position:chr26:1656674-1656355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):186, 55

               
               
               Conread position:415-630
               
               
               Cow position:chr26:9843326-9843103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):144, 54

               
               
               Conread position:421-820
               
               
               Cow position:chr26:2350827-2350417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 54

               
               
               Conread position:456-749
               
               
               Cow position:chr26:8911392-8911097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):43, 25

               
               
               Conread position:458-695
               
               
               Cow position:chr26:35680851-35681082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):50, 11

               
               
               Conread position:465-820
               
               
               Cow position:chr26:8216854-8216507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:247
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):56, 22

               
               
               Conread position:466-818
               
               
               Cow position:chr26:21708983-21708623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:247
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):19, 12

               
               
               Conread position:469-820
               
               
               Cow position:chr26:9113304-9113661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 20

               
               
               Conread position:470-821
               
               
               Cow position:chr26:20265340-20265684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:243
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):78, 26

               
               
               Conread position:473-731
               
               
               Cow position:chr26:34029404-34029659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):85, 16

               
               
               Conread position:546-809
               
               
               Cow position:chr26:8086609-8086872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):132, 23

               
               
               Conread position:556-820
               
               
               Cow position:chr26:21007656-21007926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):89, 16

               
               
               Conread position:595-766
               
               
               Cow position:chr26:16725695-16725867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):81, 30

               
               
               Conread position:624-820
               
               
               Cow position:chr26:9842822-9842628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):54, 14

               
               
               Conread position:624-820
               
               
               Cow position:chr26:17322221-17322427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):40, 83

               
               
               Conread position:677-828
               
               
               Cow position:chr26:27989628-27989477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:706-820
               
               
               Cow position:chr26:13773224-13773110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:90
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:225-820
               
               
               Cow position:chr27:1677467-1676848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:630
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 20

               
               
               Conread position:225-829
               
               
               Cow position:chr27:27664116-27664729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:625
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 20

               
               
               Conread position:227-820
               
               
               Cow position:chr27:8735302-8735895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:378
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):74, 18

               
               
               Conread position:230-820
               
               
               Cow position:chr27:26554278-26553720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:603
               
               
               Alignm identity:400
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 15

               
               
               Conread position:232-481
               
               
               Cow position:chr27:6160877-6160612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:180
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):65, 13

               
               
               Conread position:232-728
               
               
               Cow position:chr27:19259819-19260331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr27:1210478-1211081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr27:3234413-3233797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:623
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr27:5912039-5912640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:623
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr27:9992077-9991491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr27:13898444-13899036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:606
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr27:15636224-15635618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr27:25803570-25802969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr27:26326197-26326786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:603
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 13

               
               
               Conread position:233-627
               
               
               Cow position:chr27:16425852-16426250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:271
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):54, 12

               
               
               Conread position:234-561
               
               
               Cow position:chr27:25331964-25331641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 11

               
               
               Conread position:241-586
               
               
               Cow position:chr27:11486444-11486782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:256
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):60, 10

               
               
               Conread position:241-820
               
               
               Cow position:chr27:25084709-25085285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:596
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 131

               
               
               Conread position:242-820
               
               
               Cow position:chr27:15274932-15274345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 31

               
               
               Conread position:242-820
               
               
               Cow position:chr27:16033274-16032678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:603
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 80

               
               
               Conread position:245-729
               
               
               Cow position:chr27:17817955-17818456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:320
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):45, 30

               
               
               Conread position:248-676
               
               
               Cow position:chr27:1575735-1576178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:288
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):47, 228

               
               
               Conread position:256-808
               
               
               Cow position:chr27:9330877-9331447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:577
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 132

               
               
               Conread position:256-820
               
               
               Cow position:chr27:4980515-4981097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:590
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 206

               
               
               Conread position:261-740
               
               
               Cow position:chr27:7419880-7420370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:318
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):23, 19

               
               
               Conread position:262-686
               
               
               Cow position:chr27:23292428-23292845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:299
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):35, 176

               
               
               Conread position:264-527
               
               
               Cow position:chr27:16552021-16552287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):36, 97

               
               
               Conread position:297-820
               
               
               Cow position:chr27:25058106-25058626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:534
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 20

               
               
               Conread position:297-820
               
               
               Cow position:chr27:28079605-28080133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:543
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 183

               
               
               Conread position:298-820
               
               
               Cow position:chr27:167717-167203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:537
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 19

               
               
               Conread position:299-744
               
               
               Cow position:chr27:22150140-22150590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:307
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):93, 18

               
               
               Conread position:318-695
               
               
               Cow position:chr27:8589937-8590300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 70

               
               
               Conread position:325-818
               
               
               Cow position:chr27:23741748-23741247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:328
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):15, 31

               
               
               Conread position:326-767
               
               
               Cow position:chr27:2622128-2622566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:275
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):34, 63

               
               
               Conread position:329-820
               
               
               Cow position:chr27:798345-797842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 151

               
               
               Conread position:340-745
               
               
               Cow position:chr27:3104974-3105386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:269
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):52, 81

               
               
               Conread position:367-820
               
               
               Cow position:chr27:12748303-12748762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 34

               
               
               Conread position:369-821
               
               
               Cow position:chr27:29464128-29464585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:297
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):13, 30

               
               
               Conread position:370-767
               
               
               Cow position:chr27:16967251-16966864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:256
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):199, 25

               
               
               Conread position:374-640
               
               
               Cow position:chr27:23904724-23904454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):184, 21

               
               
               Conread position:374-767
               
               
               Cow position:chr27:30911502-30911901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:268
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):5, 96

               
               
               Conread position:374-820
               
               
               Cow position:chr27:1848084-1847659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:300
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):36, 18

               
               
               Conread position:375-820
               
               
               Cow position:chr27:29855983-29856425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:317
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):148, 20

               
               
               Conread position:376-821
               
               
               Cow position:chr27:19135113-19135564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:285
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):15, 72

               
               
               Conread position:380-820
               
               
               Cow position:chr27:28892900-28893333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 30

               
               
               Conread position:382-807
               
               
               Cow position:chr27:22673330-22673735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:286
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):103, 95

               
               
               Conread position:393-820
               
               
               Cow position:chr27:19524845-19525271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 82

               
               
               Conread position:417-820
               
               
               Cow position:chr27:8199123-8199533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 58

               
               
               Conread position:434-820
               
               
               Cow position:chr27:26032535-26032148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 22

               
               
               Conread position:435-786
               
               
               Cow position:chr27:21286214-21285859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 35

               
               
               Conread position:466-820
               
               
               Cow position:chr27:27194999-27194632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:249
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):24, 173

               
               
               Conread position:469-814
               
               
               Cow position:chr27:6160507-6160149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 168

               
               
               Conread position:471-819
               
               
               Cow position:chr27:29056527-29056884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 16

               
               
               Conread position:501-818
               
               
               Cow position:chr27:25035016-25034700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:225
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):37, 132

               
               
               Conread position:545-820
               
               
               Cow position:chr27:2377978-2378250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:189
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):13, 26

               
               
               Conread position:563-757
               
               
               Cow position:chr27:11486728-11486917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):115, 38

               
               
               Conread position:564-767
               
               
               Cow position:chr27:1900569-1900366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):114, 61

               
               
               Conread position:565-758
               
               
               Cow position:chr27:16264575-16264383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):113, 57

               
               
               Conread position:565-827
               
               
               Cow position:chr27:10327258-10326997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):87, 19

               
               
               Conread position:624-821
               
               
               Cow position:chr27:25872103-25872300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):130, 40

               
               
               Conread position:626-820
               
               
               Cow position:chr27:15373367-15373569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:225-716
               
               
               Cow position:chr28:9179774-9180274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-719
               
               
               Cow position:chr28:22042126-22041617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr28:484434-483825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr28:1954515-1955124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr28:7827148-7827747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:431
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 21

               
               
               Conread position:225-821
               
               
               Cow position:chr28:22232117-22231522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 20

               
               
               Conread position:227-820
               
               
               Cow position:chr28:24590019-24590625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 95

               
               
               Conread position:227-828
               
               
               Cow position:chr28:1386234-1385632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 15

               
               
               Conread position:230-802
               
               
               Cow position:chr28:21566627-21567194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:585
               
               
               Alignm identity:397
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 18

               
               
               Conread position:231-820
               
               
               Cow position:chr28:17666138-17665558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 14

               
               
               Conread position:231-820
               
               
               Cow position:chr28:32791210-32790630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 14

               
               
               Conread position:232-676
               
               
               Cow position:chr28:5567308-5567748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 13

               
               
               Conread position:232-818
               
               
               Cow position:chr28:6778773-6778174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:608
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr28:1166711-1166124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:604
               
               
               Alignm identity:419
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr28:1506035-1506635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr28:3191087-3190483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr28:5750539-5749934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr28:7741610-7742202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 10

               
               
               Conread position:232-820
               
               
               Cow position:chr28:8380232-8380806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:606
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr28:14704219-14703614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr28:15034955-15034342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr28:17389569-17390172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr28:18519280-18518678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr28:22259983-22259386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr28:26425086-26424492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr28:29821164-29821757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:606
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-822
               
               
               Cow position:chr28:7003165-7003771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-828
               
               
               Cow position:chr28:24668778-24669374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:419
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 24

               
               
               Conread position:233-645
               
               
               Cow position:chr28:10460440-10460023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:283
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):65, 18

               
               
               Conread position:233-820
               
               
               Cow position:chr28:2085627-2086234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 141

               
               
               Conread position:233-820
               
               
               Cow position:chr28:13461145-13461737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 12

               
               
               Conread position:235-820
               
               
               Cow position:chr28:15587258-15587837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:602
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 192

               
               
               Conread position:238-820
               
               
               Cow position:chr28:17381684-17381103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:602
               
               
               Alignm identity:394
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 7

               
               
               Conread position:238-828
               
               
               Cow position:chr28:5765906-5766508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:405
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 7

               
               
               Conread position:242-438
               
               
               Cow position:chr28:11490079-11489884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):58, 83

               
               
               Conread position:242-473
               
               
               Cow position:chr28:5913280-5913048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):40, 61

               
               
               Conread position:242-560
               
               
               Cow position:chr28:34314144-34314450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):104, 9

               
               
               Conread position:242-729
               
               
               Cow position:chr28:18146559-18146067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:339
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):54, 17

               
               
               Conread position:242-819
               
               
               Cow position:chr28:12423432-12422859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:588
               
               
               Alignm identity:348
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):118, 232

               
               
               Conread position:243-820
               
               
               Cow position:chr28:12409057-12408454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:419
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 231

               
               
               Conread position:245-470
               
               
               Cow position:chr28:7788718-7788487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):56, 77

               
               
               Conread position:245-745
               
               
               Cow position:chr28:29539932-29539437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:335
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):17, 60

               
               
               Conread position:245-781
               
               
               Cow position:chr28:5803219-5803748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:555
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 144

               
               
               Conread position:245-784
               
               
               Cow position:chr28:33253486-33254047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:568
               
               
               Alignm identity:395
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 187

               
               
               Conread position:245-820
               
               
               Cow position:chr28:10646245-10645669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:595
               
               
               Alignm identity:398
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 28

               
               
               Conread position:245-828
               
               
               Cow position:chr28:7811618-7812197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:377
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):59, 69

               
               
               Conread position:248-828
               
               
               Cow position:chr28:5799476-5800068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:603
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 72

               
               
               Conread position:248-828
               
               
               Cow position:chr28:21360674-21361268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 75

               
               
               Conread position:249-818
               
               
               Cow position:chr28:25760688-25761231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:578
               
               
               Alignm identity:369
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):51, 24

               
               
               Conread position:251-820
               
               
               Cow position:chr28:783843-784425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:590
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 230

               
               
               Conread position:256-820
               
               
               Cow position:chr28:5938675-5939257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:588
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 230

               
               
               Conread position:262-550
               
               
               Cow position:chr28:14232735-14232432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:206
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:263-822
               
               
               Cow position:chr28:25168917-25168385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:567
               
               
               Alignm identity:368
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):36, 62

               
               
               Conread position:291-820
               
               
               Cow position:chr28:10580650-10580103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:559
               
               
               Alignm identity:386
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 176

               
               
               Conread position:296-817
               
               
               Cow position:chr28:12648443-12647925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:534
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 180

               
               
               Conread position:297-794
               
               
               Cow position:chr28:2117215-2117737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:528
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 60

               
               
               Conread position:297-820
               
               
               Cow position:chr28:8719723-8719192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:539
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 340

               
               
               Conread position:302-624
               
               
               Cow position:chr28:15684700-15685015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:224
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):39, 15

               
               
               Conread position:302-798
               
               
               Cow position:chr28:18100241-18099750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 58

               
               
               Conread position:302-820
               
               
               Cow position:chr28:20634822-20634296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:540
               
               
               Alignm identity:353
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):62, 15

               
               
               Conread position:304-773
               
               
               Cow position:chr28:13604001-13604479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 155

               
               
               Conread position:323-820
               
               
               Cow position:chr28:10615729-10615238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:343
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):19, 87

               
               
               Conread position:324-678
               
               
               Cow position:chr28:25713523-25713167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:243
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):18, 89

               
               
               Conread position:324-727
               
               
               Cow position:chr28:32269951-32270348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:275
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):16, 32

               
               
               Conread position:328-734
               
               
               Cow position:chr28:6786531-6786932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:287
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):12, 106

               
               
               Conread position:340-820
               
               
               Cow position:chr28:1459373-1459864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 139

               
               
               Conread position:345-820
               
               
               Cow position:chr28:22457081-22457541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):333, 49

               
               
               Conread position:360-820
               
               
               Cow position:chr28:6537512-6537041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 119

               
               
               Conread position:360-820
               
               
               Cow position:chr28:34595531-34596001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 118

               
               
               Conread position:361-649
               
               
               Cow position:chr28:14752085-14752382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):27, 118

               
               
               Conread position:365-682
               
               
               Cow position:chr28:5112815-5112493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 29

               
               
               Conread position:365-820
               
               
               Cow position:chr28:12151640-12152095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 23

               
               
               Conread position:367-827
               
               
               Cow position:chr28:8784629-8785091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 91

               
               
               Conread position:372-819
               
               
               Cow position:chr28:10470980-10471420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 30

               
               
               Conread position:375-821
               
               
               Cow position:chr28:7707372-7706929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 75

               
               
               Conread position:381-538
               
               
               Cow position:chr28:11510955-11510797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):78, 13

               
               
               Conread position:382-570
               
               
               Cow position:chr28:15241355-15241170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):35, 22

               
               
               Conread position:383-820
               
               
               Cow position:chr28:24558930-24559369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 46

               
               
               Conread position:388-820
               
               
               Cow position:chr28:591629-591187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:285
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):36, 56

               
               
               Conread position:392-820
               
               
               Cow position:chr28:33637876-33638315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):171, 83

               
               
               Conread position:394-727
               
               
               Cow position:chr28:25501148-25500810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):57, 75

               
               
               Conread position:396-820
               
               
               Cow position:chr28:1216492-1216068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 58

               
               
               Conread position:403-820
               
               
               Cow position:chr28:698628-699045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 23

               
               
               Conread position:414-805
               
               
               Cow position:chr28:15574507-15574878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:259
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):10, 46

               
               
               Conread position:415-636
               
               
               Cow position:chr28:10067973-10067754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):87, 54

               
               
               Conread position:428-772
               
               
               Cow position:chr28:22236657-22236316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:240
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):84, 12

               
               
               Conread position:435-814
               
               
               Cow position:chr28:29337877-29338251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:239
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):142, 32

               
               
               Conread position:435-820
               
               
               Cow position:chr28:1813552-1813165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 40

               
               
               Conread position:440-746
               
               
               Cow position:chr28:919166-918849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):22, 27

               
               
               Conread position:440-746
               
               
               Cow position:chr28:934856-934541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):22, 27

               
               
               Conread position:472-767
               
               
               Cow position:chr28:8628726-8628442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):129, 15

               
               
               Conread position:498-828
               
               
               Cow position:chr28:11504796-11504464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:234
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):60, 34

               
               
               Conread position:513-797
               
               
               Cow position:chr28:11489424-11489134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):46, 124

               
               
               Conread position:514-820
               
               
               Cow position:chr28:9288402-9288716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 103

               
               
               Conread position:546-818
               
               
               Cow position:chr28:32304750-32304482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:198
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):132, 24

               
               
               Conread position:546-820
               
               
               Cow position:chr28:1765476-1765746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):51, 23

               
               
               Conread position:550-806
               
               
               Cow position:chr28:15673830-15674085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):54, 15

               
               
               Conread position:551-820
               
               
               Cow position:chr28:7059168-7058899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:197
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):10, 35

               
               
               Conread position:553-820
               
               
               Cow position:chr28:15684970-15685235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):9, 70

               
               
               Conread position:565-819
               
               
               Cow position:chr28:23023746-23023987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):113, 17

               
               
               Conread position:573-781
               
               
               Cow position:chr28:31850430-31850222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):105, 52

               
               
               Conread position:597-818
               
               
               Cow position:chr28:10495955-10495734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):94, 28

               
               
               Conread position:606-820
               
               
               Cow position:chr28:6350379-6350596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):70, 17

               
               
               Conread position:606-820
               
               
               Cow position:chr28:9295800-9295590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):36, 19

               
               
               Conread position:607-807
               
               
               Cow position:chr28:1772947-1773143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):66, 20

               
               
               Conread position:619-786
               
               
               Cow position:chr28:10650960-10650793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):59, 6

               
               
               Conread position:624-820
               
               
               Cow position:chr28:31591131-31591328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:624-820
               
               
               Cow position:chr28:34202081-34201884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:625-828
               
               
               Cow position:chr28:10067489-10067283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:676-820
               
               
               Cow position:chr28:15998728-15998872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:53-820
               
               
               Cow position:chr29:2691117-2691895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:788
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 348

               
               
               Conread position:225-426
               
               
               Cow position:chr29:35297943-35298154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):72, 20

               
               
               Conread position:225-526
               
               
               Cow position:chr29:35814849-35814543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:224
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-629
               
               
               Cow position:chr29:3328460-3328880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-636
               
               
               Cow position:chr29:42092886-42093313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-694
               
               
               Cow position:chr29:42939071-42938595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr29:13583205-13583814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr29:13622731-13622125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr29:20252293-20252905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:629
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr29:27979798-27979188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 17

               
               
               Conread position:225-820
               
               
               Cow position:chr29:31182530-31183135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:227-484
               
               
               Cow position:chr29:10822854-10822584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):73, 18

               
               
               Conread position:227-760
               
               
               Cow position:chr29:14085001-14084456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:557
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 18

               
               
               Conread position:227-820
               
               
               Cow position:chr29:2465727-2465143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:604
               
               
               Alignm identity:402
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 18

               
               
               Conread position:227-820
               
               
               Cow position:chr29:5958718-5959308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 18

               
               
               Conread position:227-820
               
               
               Cow position:chr29:19654757-19655351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 18

               
               
               Conread position:227-828
               
               
               Cow position:chr29:42803539-42804132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 18

               
               
               Conread position:230-779
               
               
               Cow position:chr29:15946676-15946141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:561
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 70

               
               
               Conread position:231-755
               
               
               Cow position:chr29:15997519-15996984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:547
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 14

               
               
               Conread position:232-465
               
               
               Cow position:chr29:7430085-7429837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):66, 13

               
               
               Conread position:232-590
               
               
               Cow position:chr29:10647116-10646763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:243
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):66, 13

               
               
               Conread position:232-759
               
               
               Cow position:chr29:6213655-6214172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:540
               
               
               Alignm identity:351
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):70, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr29:47305-46728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:405
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr29:5236150-5236757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr29:14210436-14209819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:624
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr29:16345340-16345945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr29:26163700-26163100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr29:38228111-38228710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr29:45205633-45206263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:640
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:233-484
               
               
               Cow position:chr29:32804553-32804800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):67, 12

               
               
               Conread position:234-820
               
               
               Cow position:chr29:25931397-25930785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 179

               
               
               Conread position:236-501
               
               
               Cow position:chr29:9642654-9642384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):18, 25

               
               
               Conread position:237-747
               
               
               Cow position:chr29:5981572-5981061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:526
               
               
               Alignm identity:341
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):63, 227

               
               
               Conread position:240-585
               
               
               Cow position:chr29:13651190-13651528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:232
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):83, 59

               
               
               Conread position:242-561
               
               
               Cow position:chr29:21518220-21517903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):77, 219

               
               
               Conread position:242-666
               
               
               Cow position:chr29:18855808-18855367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 244

               
               
               Conread position:242-820
               
               
               Cow position:chr29:7845529-7846123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:602
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 242

               
               
               Conread position:242-820
               
               
               Cow position:chr29:32558615-32558018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:604
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 245

               
               
               Conread position:242-820
               
               
               Cow position:chr29:32891932-32892507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:392
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 156

               
               
               Conread position:242-820
               
               
               Cow position:chr29:38207533-38206931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 245

               
               
               Conread position:243-818
               
               
               Cow position:chr29:34798667-34798081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:598
               
               
               Alignm identity:415
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 83

               
               
               Conread position:245-781
               
               
               Cow position:chr29:14587066-14587613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:558
               
               
               Alignm identity:386
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 14

               
               
               Conread position:245-820
               
               
               Cow position:chr29:609498-608915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:596
               
               
               Alignm identity:421
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 76

               
               
               Conread position:245-820
               
               
               Cow position:chr29:23977268-23977856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:415
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 221

               
               
               Conread position:245-820
               
               
               Cow position:chr29:32541240-32541827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 243

               
               
               Conread position:248-695
               
               
               Cow position:chr29:12793362-12793846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 216

               
               
               Conread position:251-820
               
               
               Cow position:chr29:16023721-16024296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:587
               
               
               Alignm identity:402
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 63

               
               
               Conread position:251-820
               
               
               Cow position:chr29:19622131-19621534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:602
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 229

               
               
               Conread position:256-820
               
               
               Cow position:chr29:2840189-2839607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:590
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 222

               
               
               Conread position:256-820
               
               
               Cow position:chr29:39078551-39077978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:585
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 142

               
               
               Conread position:261-636
               
               
               Cow position:chr29:3699116-3699486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:253
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):38, 89

               
               
               Conread position:262-665
               
               
               Cow position:chr29:21425854-21425447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:291
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):36, 119

               
               
               Conread position:262-776
               
               
               Cow position:chr29:8664670-8665194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:532
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 60

               
               
               Conread position:264-787
               
               
               Cow position:chr29:30259368-30258852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:538
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 125

               
               
               Conread position:264-820
               
               
               Cow position:chr29:45460906-45461479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:581
               
               
               Alignm identity:408
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 204

               
               
               Conread position:297-820
               
               
               Cow position:chr29:2949157-2948643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:541
               
               
               Alignm identity:353
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):33, 86

               
               
               Conread position:297-820
               
               
               Cow position:chr29:3176219-3175722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:532
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 23

               
               
               Conread position:297-820
               
               
               Cow position:chr29:6264798-6264266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:543
               
               
               Alignm identity:386
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 62

               
               
               Conread position:297-820
               
               
               Cow position:chr29:36635187-36634651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:542
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 20

               
               
               Conread position:299-820
               
               
               Cow position:chr29:2101038-2101571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:540
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 182

               
               
               Conread position:302-768
               
               
               Cow position:chr29:19953833-19954301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:325
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):28, 175

               
               
               Conread position:324-695
               
               
               Cow position:chr29:38237295-38236926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:253
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):23, 150

               
               
               Conread position:324-821
               
               
               Cow position:chr29:647054-647541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):238, 21

               
               
               Conread position:325-820
               
               
               Cow position:chr29:40501771-40501274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 154

               
               
               Conread position:326-820
               
               
               Cow position:chr29:21431625-21431119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 148

               
               
               Conread position:330-631
               
               
               Cow position:chr29:6198521-6198210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:221
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):58, 142

               
               
               Conread position:330-820
               
               
               Cow position:chr29:27180520-27180020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 15

               
               
               Conread position:344-820
               
               
               Cow position:chr29:10023086-10022599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 135

               
               
               Conread position:345-820
               
               
               Cow position:chr29:4633372-4632909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 37

               
               
               Conread position:354-719
               
               
               Cow position:chr29:29503003-29502627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 125

               
               
               Conread position:360-755
               
               
               Cow position:chr29:27262453-27262044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 114

               
               
               Conread position:360-768
               
               
               Cow position:chr29:14112798-14113223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:279
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):14, 48

               
               
               Conread position:361-793
               
               
               Cow position:chr29:16166333-16165919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:296
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):41, 31

               
               
               Conread position:367-820
               
               
               Cow position:chr29:13851602-13851145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 110

               
               
               Conread position:373-574
               
               
               Cow position:chr29:21265991-21266183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:373-820
               
               
               Cow position:chr29:19888860-19889316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 84

               
               
               Conread position:373-828
               
               
               Cow position:chr29:24335721-24335262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 15

               
               
               Conread position:374-818
               
               
               Cow position:chr29:23905121-23905557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:306
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):132, 11

               
               
               Conread position:374-820
               
               
               Cow position:chr29:409968-409529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):223, 95

               
               
               Conread position:376-820
               
               
               Cow position:chr29:2146505-2146053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:309
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):40, 98

               
               
               Conread position:385-828
               
               
               Cow position:chr29:37165383-37165819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 84

               
               
               Conread position:388-820
               
               
               Cow position:chr29:32287541-32287979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 81

               
               
               Conread position:389-781
               
               
               Cow position:chr29:4516859-4517255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):168, 74

               
               
               Conread position:398-820
               
               
               Cow position:chr29:35298217-35298643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 77

               
               
               Conread position:399-828
               
               
               Cow position:chr29:2182956-2183355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:291
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):8, 57

               
               
               Conread position:401-820
               
               
               Cow position:chr29:14098052-14098490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:296
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):140, 67

               
               
               Conread position:404-607
               
               
               Cow position:chr29:252046-252253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):86, 17

               
               
               Conread position:408-821
               
               
               Cow position:chr29:31547360-31546953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:262
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):133, 61

               
               
               Conread position:421-820
               
               
               Cow position:chr29:43324850-43325249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 55

               
               
               Conread position:427-804
               
               
               Cow position:chr29:16661342-16661714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):231, 48

               
               
               Conread position:456-828
               
               
               Cow position:chr29:16172753-16172367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:269
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):74, 19

               
               
               Conread position:457-820
               
               
               Cow position:chr29:10822557-10822185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 176

               
               
               Conread position:459-820
               
               
               Cow position:chr29:7429759-7429387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 16

               
               
               Conread position:471-820
               
               
               Cow position:chr29:19526911-19526553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 16

               
               
               Conread position:485-828
               
               
               Cow position:chr29:9641399-9641044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 152

               
               
               Conread position:495-818
               
               
               Cow position:chr29:34585677-34586010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):55, 134

               
               
               Conread position:512-820
               
               
               Cow position:chr29:13018112-13018423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):40, 123

               
               
               Conread position:548-828
               
               
               Cow position:chr29:45624854-45625131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):237, 24

               
               
               Conread position:565-807
               
               
               Cow position:chr29:32038341-32038583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):61, 177

               
               
               Conread position:565-820
               
               
               Cow position:chr29:29704187-29703930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):111, 60

               
               
               Conread position:565-828
               
               
               Cow position:chr29:27812571-27812824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):113, 19

               
               
               Conread position:579-812
               
               
               Cow position:chr29:21459908-21460135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):98, 45

               
               
               Conread position:593-820
               
               
               Cow position:chr29:252468-252694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):25, 33

               
               
               Conread position:603-755
               
               
               Cow position:chr29:44469101-44469256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:607-829
               
               
               Cow position:chr29:9082362-9082146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:159
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):71, 18

               
               
               Conread position:624-749
               
               
               Cow position:chr29:3329146-3329272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:624-821
               
               
               Cow position:chr29:26215818-26216010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):54, 71

               
               
               Conread position:626-820
               
               
               Cow position:chr29:15625183-15624989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):52, 64

               
               
               Conread position:628-819
               
               
               Cow position:chr29:17406666-17406856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:632-820
               
               
               Cow position:chr29:17151791-17151984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):44, 69

               
               
               Conread position:635-820
               
               
               Cow position:chr29:10645863-10645678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):43, 111

               
               
               Conread position:653-820
               
               
               Cow position:chr29:21422129-21421966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):25, 9

               
               
               Conread position:686-821
               
               
               Cow position:chr29:12794079-12794215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:1-108
               
               
               Cow position:chr3:67244735-67244843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:93
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:224-821
               
               
               Cow position:chr3:49544168-49543562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 23

               
               
               Conread position:225-438
               
               
               Cow position:chr3:47177231-47177008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-462
               
               
               Cow position:chr3:7170240-7170487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):72, 20

               
               
               Conread position:225-528
               
               
               Cow position:chr3:36118932-36119226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-711
               
               
               Cow position:chr3:30331084-30330581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-755
               
               
               Cow position:chr3:27919464-27920011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:556
               
               
               Alignm identity:394
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-809
               
               
               Cow position:chr3:2368300-2367701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-814
               
               
               Cow position:chr3:41209565-41208960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-818
               
               
               Cow position:chr3:30617883-30617277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr3:1742370-1742980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr3:2918504-2919113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:440
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr3:3524061-3524660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr3:4287126-4287735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:444
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr3:7157683-7157070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr3:7247581-7248181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr3:18860454-18861070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:624
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr3:19800135-19799530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr3:19879683-19880293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr3:29330252-29329641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr3:34506306-34505704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr3:36863421-36862809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr3:45033780-45034388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr3:46860253-46859645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr3:56295225-56295834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr3:64027098-64026489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:438
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr3:64651674-64652257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr3:66889930-66889319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr3:68698927-68698326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:419
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr3:74058568-74059174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:419
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-821
               
               
               Cow position:chr3:37970083-37970696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:443
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:227-819
               
               
               Cow position:chr3:45975538-45976147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 18

               
               
               Conread position:227-820
               
               
               Cow position:chr3:56146355-56146953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 18

               
               
               Conread position:228-637
               
               
               Cow position:chr3:59862421-59862838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:286
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):72, 17

               
               
               Conread position:228-683
               
               
               Cow position:chr3:48843294-48843768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 17

               
               
               Conread position:228-820
               
               
               Cow position:chr3:595180-595775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 17

               
               
               Conread position:229-818
               
               
               Cow position:chr3:5994043-5993441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 13

               
               
               Conread position:229-820
               
               
               Cow position:chr3:19945279-19945899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:625
               
               
               Alignm identity:390
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):15, 47

               
               
               Conread position:229-820
               
               
               Cow position:chr3:35192589-35193173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:386
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):17, 99

               
               
               Conread position:231-815
               
               
               Cow position:chr3:42448155-42448759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 16

               
               
               Conread position:231-820
               
               
               Cow position:chr3:38494285-38494888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:431
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 14

               
               
               Conread position:232-528
               
               
               Cow position:chr3:24347007-24347295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:215
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):99, 10

               
               
               Conread position:232-767
               
               
               Cow position:chr3:18943077-18943612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:556
               
               
               Alignm identity:400
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 93

               
               
               Conread position:232-782
               
               
               Cow position:chr3:5884579-5885139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:572
               
               
               Alignm identity:394
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr3:6783412-6784017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr3:7478875-7478266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr3:18812548-18813149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr3:20382072-20382684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr3:21181650-21181049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr3:30315605-30316196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr3:36877612-36877011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:415
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr3:40824437-40825041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr3:49136525-49135916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr3:57483682-57483077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr3:72631109-72631705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:608
               
               
               Alignm identity:421
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr3:78026365-78025773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:604
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-822
               
               
               Cow position:chr3:24445029-24444450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:233-820
               
               
               Cow position:chr3:46017092-46017690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:419
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 12

               
               
               Conread position:234-820
               
               
               Cow position:chr3:32621994-32621393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 88

               
               
               Conread position:235-820
               
               
               Cow position:chr3:7313417-7312828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:603
               
               
               Alignm identity:385
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):37, 110

               
               
               Conread position:236-587
               
               
               Cow position:chr3:70888186-70888541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 139

               
               
               Conread position:236-692
               
               
               Cow position:chr3:3057854-3058334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:327
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):64, 9

               
               
               Conread position:237-560
               
               
               Cow position:chr3:33845633-33845315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):63, 8

               
               
               Conread position:237-761
               
               
               Cow position:chr3:24193219-24192706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:535
               
               
               Alignm identity:333
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):23, 33

               
               
               Conread position:238-504
               
               
               Cow position:chr3:15181408-15181680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):62, 7

               
               
               Conread position:238-561
               
               
               Cow position:chr3:33634154-33634485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:236
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):62, 7

               
               
               Conread position:241-574
               
               
               Cow position:chr3:31319220-31319553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):63, 7

               
               
               Conread position:242-467
               
               
               Cow position:chr3:56635652-56635880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):57, 44

               
               
               Conread position:242-597
               
               
               Cow position:chr3:24588392-24588046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:246
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):148, 38

               
               
               Conread position:242-729
               
               
               Cow position:chr3:63002486-63002004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 32

               
               
               Conread position:242-767
               
               
               Cow position:chr3:47080357-47079814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:550
               
               
               Alignm identity:392
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 244

               
               
               Conread position:242-792
               
               
               Cow position:chr3:2906718-2906136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:587
               
               
               Alignm identity:396
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 238

               
               
               Conread position:242-799
               
               
               Cow position:chr3:18354950-18354405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:569
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 20

               
               
               Conread position:242-818
               
               
               Cow position:chr3:56100628-56100041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 31

               
               
               Conread position:242-820
               
               
               Cow position:chr3:24644288-24644862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:591
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 18

               
               
               Conread position:242-828
               
               
               Cow position:chr3:47087356-47087934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 80

               
               
               Conread position:242-829
               
               
               Cow position:chr3:67164343-67164943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 80

               
               
               Conread position:245-601
               
               
               Cow position:chr3:56398238-56398608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:260
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):41, 133

               
               
               Conread position:245-621
               
               
               Cow position:chr3:19939949-19940338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 209

               
               
               Conread position:245-812
               
               
               Cow position:chr3:6877113-6876547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:586
               
               
               Alignm identity:397
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 76

               
               
               Conread position:245-820
               
               
               Cow position:chr3:2709811-2709221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 241

               
               
               Conread position:245-820
               
               
               Cow position:chr3:2869843-2870437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:601
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 78

               
               
               Conread position:245-820
               
               
               Cow position:chr3:19755876-19755315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:587
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 168

               
               
               Conread position:245-820
               
               
               Cow position:chr3:24458117-24457532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:386
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):145, 96

               
               
               Conread position:245-820
               
               
               Cow position:chr3:34029869-34029271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 246

               
               
               Conread position:245-820
               
               
               Cow position:chr3:37626055-37626630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:595
               
               
               Alignm identity:401
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 29

               
               
               Conread position:245-820
               
               
               Cow position:chr3:46503614-46504198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:598
               
               
               Alignm identity:405
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 176

               
               
               Conread position:245-820
               
               
               Cow position:chr3:53516660-53517258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:604
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 241

               
               
               Conread position:245-820
               
               
               Cow position:chr3:64016314-64015734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:602
               
               
               Alignm identity:421
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 246

               
               
               Conread position:245-820
               
               
               Cow position:chr3:68872690-68872106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:595
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 32

               
               
               Conread position:245-821
               
               
               Cow position:chr3:16887810-16887246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:591
               
               
               Alignm identity:384
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):121, 52

               
               
               Conread position:245-821
               
               
               Cow position:chr3:50916399-50916987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:603
               
               
               Alignm identity:403
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 214

               
               
               Conread position:247-738
               
               
               Cow position:chr3:13476451-13476933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:330
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):21, 80

               
               
               Conread position:247-762
               
               
               Cow position:chr3:52653583-52653072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:532
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 30

               
               
               Conread position:248-645
               
               
               Cow position:chr3:10240722-10241126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 212

               
               
               Conread position:248-692
               
               
               Cow position:chr3:37952937-37952479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:313
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):52, 76

               
               
               Conread position:251-528
               
               
               Cow position:chr3:12678775-12678488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:204
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):50, 35

               
               
               Conread position:251-820
               
               
               Cow position:chr3:40339084-40338499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:593
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 29

               
               
               Conread position:252-727
               
               
               Cow position:chr3:64823167-64823660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 215

               
               
               Conread position:252-820
               
               
               Cow position:chr3:6686874-6687436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:587
               
               
               Alignm identity:403
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 96

               
               
               Conread position:256-518
               
               
               Cow position:chr3:48229405-48229139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):41, 66

               
               
               Conread position:256-820
               
               
               Cow position:chr3:23289263-23288685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:587
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 153

               
               
               Conread position:259-820
               
               
               Cow position:chr3:15054602-15054056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:579
               
               
               Alignm identity:400
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):333, 18

               
               
               Conread position:260-828
               
               
               Cow position:chr3:29579699-29580279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:601
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 62

               
               
               Conread position:261-819
               
               
               Cow position:chr3:31416093-31416664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:585
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 12

               
               
               Conread position:261-820
               
               
               Cow position:chr3:48058289-48057712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:584
               
               
               Alignm identity:408
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 225

               
               
               Conread position:262-599
               
               
               Cow position:chr3:56339343-56338987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:246
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):37, 217

               
               
               Conread position:262-820
               
               
               Cow position:chr3:4736809-4736276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:568
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 84

               
               
               Conread position:262-821
               
               
               Cow position:chr3:39879936-39879380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:571
               
               
               Alignm identity:393
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 201

               
               
               Conread position:263-646
               
               
               Cow position:chr3:38867392-38867791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 222

               
               
               Conread position:264-820
               
               
               Cow position:chr3:55892492-55893037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:570
               
               
               Alignm identity:392
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 53

               
               
               Conread position:264-828
               
               
               Cow position:chr3:77424700-77425248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:580
               
               
               Alignm identity:389
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 52

               
               
               Conread position:265-820
               
               
               Cow position:chr3:3840433-3839869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:579
               
               
               Alignm identity:400
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 198

               
               
               Conread position:270-748
               
               
               Cow position:chr3:51939018-51938527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 79

               
               
               Conread position:280-818
               
               
               Cow position:chr3:67768927-67769454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:548
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 90

               
               
               Conread position:281-491
               
               
               Cow position:chr3:42720600-42720380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):20, 41

               
               
               Conread position:281-820
               
               
               Cow position:chr3:72671433-72670903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:551
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 196

               
               
               Conread position:283-819
               
               
               Cow position:chr3:60263924-60263370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:562
               
               
               Alignm identity:362
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):17, 117

               
               
               Conread position:297-761
               
               
               Cow position:chr3:53412243-53412712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:334
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):30, 20

               
               
               Conread position:297-804
               
               
               Cow position:chr3:63255255-63255754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 23

               
               
               Conread position:297-819
               
               
               Cow position:chr3:51364673-51364141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:538
               
               
               Alignm identity:392
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 184

               
               
               Conread position:299-765
               
               
               Cow position:chr3:11541891-11542361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:311
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):20, 66

               
               
               Conread position:324-664
               
               
               Cow position:chr3:29338761-29338412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):16, 85

               
               
               Conread position:324-805
               
               
               Cow position:chr3:2854300-2853818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 120

               
               
               Conread position:324-815
               
               
               Cow position:chr3:18462693-18462202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 140

               
               
               Conread position:324-820
               
               
               Cow position:chr3:44925204-44925711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 21

               
               
               Conread position:325-560
               
               
               Cow position:chr3:55486144-55486373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:172
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):63, 95

               
               
               Conread position:325-644
               
               
               Cow position:chr3:46922607-46922293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:214
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):40, 45

               
               
               Conread position:325-731
               
               
               Cow position:chr3:33843674-33843270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 27

               
               
               Conread position:325-821
               
               
               Cow position:chr3:58948682-58949178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 28

               
               
               Conread position:327-749
               
               
               Cow position:chr3:16899031-16898627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:286
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):47, 62

               
               
               Conread position:328-722
               
               
               Cow position:chr3:652765-652367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:262
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):23, 129

               
               
               Conread position:329-636
               
               
               Cow position:chr3:34198030-34198336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:223
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):11, 33

               
               
               Conread position:331-488
               
               
               Cow position:chr3:49271001-49270840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:334-821
               
               
               Cow position:chr3:69099666-69099194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 89

               
               
               Conread position:339-820
               
               
               Cow position:chr3:29575967-29575475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 140

               
               
               Conread position:340-820
               
               
               Cow position:chr3:63241079-63240595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):205, 78

               
               
               Conread position:358-820
               
               
               Cow position:chr3:19889451-19889012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 64

               
               
               Conread position:359-683
               
               
               Cow position:chr3:15806701-15807015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):29, 74

               
               
               Conread position:360-820
               
               
               Cow position:chr3:23206692-23206227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 94

               
               
               Conread position:360-820
               
               
               Cow position:chr3:56327291-56327756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 71

               
               
               Conread position:361-729
               
               
               Cow position:chr3:33706730-33706372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:257
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):207, 13

               
               
               Conread position:365-831
               
               
               Cow position:chr3:66621387-66621855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 84

               
               
               Conread position:366-762
               
               
               Cow position:chr3:19832732-19832322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:279
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):14, 105

               
               
               Conread position:373-567
               
               
               Cow position:chr3:27691864-27692050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):11, 86

               
               
               Conread position:373-622
               
               
               Cow position:chr3:2509849-2509591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):18, 34

               
               
               Conread position:373-754
               
               
               Cow position:chr3:65208026-65207640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:271
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):14, 41

               
               
               Conread position:374-541
               
               
               Cow position:chr3:72783745-72783580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):6, 90

               
               
               Conread position:374-809
               
               
               Cow position:chr3:8239896-8240329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:289
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):198, 27

               
               
               Conread position:374-819
               
               
               Cow position:chr3:21258307-21257872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:297
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):143, 18

               
               
               Conread position:375-663
               
               
               Cow position:chr3:5430579-5430286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):13, 101

               
               
               Conread position:376-767
               
               
               Cow position:chr3:23066270-23065893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:264
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):172, 49

               
               
               Conread position:376-818
               
               
               Cow position:chr3:63946374-63946777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:290
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):300, 93

               
               
               Conread position:378-685
               
               
               Cow position:chr3:51138506-51138815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:211
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):152, 66

               
               
               Conread position:379-820
               
               
               Cow position:chr3:19720456-19720010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 74

               
               
               Conread position:382-729
               
               
               Cow position:chr3:25783437-25783079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:245
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):63, 17

               
               
               Conread position:385-766
               
               
               Cow position:chr3:19074312-19074677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:257
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):59, 10

               
               
               Conread position:385-820
               
               
               Cow position:chr3:69932624-69932185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:291
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):68, 29

               
               
               Conread position:386-780
               
               
               Cow position:chr3:71687298-71687686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:256
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):120, 69

               
               
               Conread position:388-585
               
               
               Cow position:chr3:40616634-40616439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):169, 31

               
               
               Conread position:391-820
               
               
               Cow position:chr3:77444624-77445052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:288
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):52, 19

               
               
               Conread position:395-805
               
               
               Cow position:chr3:40298698-40298307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:268
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):44, 73

               
               
               Conread position:395-821
               
               
               Cow position:chr3:24354378-24354796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:294
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):182, 40

               
               
               Conread position:395-828
               
               
               Cow position:chr3:5952964-5952530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 80

               
               
               Conread position:401-812
               
               
               Cow position:chr3:34090266-34089840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:276
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):64, 20

               
               
               Conread position:406-820
               
               
               Cow position:chr3:75184660-75185054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:283
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):185, 41

               
               
               Conread position:414-757
               
               
               Cow position:chr3:84197057-84197401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 51

               
               
               Conread position:414-819
               
               
               Cow position:chr3:16076583-16076991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:281
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):39, 7

               
               
               Conread position:425-780
               
               
               Cow position:chr3:43481043-43481407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:241
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):118, 29

               
               
               Conread position:429-799
               
               
               Cow position:chr3:54772223-54772578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:254
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):125, 40

               
               
               Conread position:429-821
               
               
               Cow position:chr3:32200271-32200666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 40

               
               
               Conread position:433-744
               
               
               Cow position:chr3:23235480-23235185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):30, 63

               
               
               Conread position:439-804
               
               
               Cow position:chr3:62503383-62503757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:260
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):14, 51

               
               
               Conread position:444-812
               
               
               Cow position:chr3:74851862-74851508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 12

               
               
               Conread position:455-820
               
               
               Cow position:chr3:18558103-18558465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):114, 31

               
               
               Conread position:456-642
               
               
               Cow position:chr3:77579141-77578952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):100, 13

               
               
               Conread position:456-821
               
               
               Cow position:chr3:27864455-27864822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:259
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):101, 13

               
               
               Conread position:469-820
               
               
               Cow position:chr3:16224169-16224534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 169

               
               
               Conread position:472-805
               
               
               Cow position:chr3:68891278-68890937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:240
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):80, 17

               
               
               Conread position:478-715
               
               
               Cow position:chr3:73302564-73302805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):12, 77

               
               
               Conread position:510-820
               
               
               Cow position:chr3:54291251-54290933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 128

               
               
               Conread position:547-806
               
               
               Cow position:chr3:70197597-70197858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):44, 22

               
               
               Conread position:547-820
               
               
               Cow position:chr3:23944164-23943889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):58, 25

               
               
               Conread position:554-821
               
               
               Cow position:chr3:48229130-48228866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):49, 18

               
               
               Conread position:561-800
               
               
               Cow position:chr3:68705852-68706088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):115, 64

               
               
               Conread position:564-820
               
               
               Cow position:chr3:43191899-43191643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:185
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):112, 61

               
               
               Conread position:565-779
               
               
               Cow position:chr3:40103826-40103620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):108, 36

               
               
               Conread position:565-792
               
               
               Cow position:chr3:8438434-8438661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):111, 60

               
               
               Conread position:571-801
               
               
               Cow position:chr3:70888654-70888889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):41, 204

               
               
               Conread position:571-820
               
               
               Cow position:chr3:64356564-64356317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):107, 26

               
               
               Conread position:576-820
               
               
               Cow position:chr3:51857286-51857042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 49

               
               
               Conread position:585-775
               
               
               Cow position:chr3:63218563-63218752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):90, 40

               
               
               Conread position:593-820
               
               
               Cow position:chr3:56338851-56338622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):83, 32

               
               
               Conread position:599-818
               
               
               Cow position:chr3:80480313-80480094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:605-820
               
               
               Cow position:chr3:37656798-37657009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):164, 20

               
               
               Conread position:607-828
               
               
               Cow position:chr3:4029167-4029389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):11, 22

               
               
               Conread position:612-820
               
               
               Cow position:chr3:19940371-19940578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):66, 13

               
               
               Conread position:616-819
               
               
               Cow position:chr3:49562231-49562027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):9, 89

               
               
               Conread position:619-819
               
               
               Cow position:chr3:58127241-58127435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):57, 6

               
               
               Conread position:624-806
               
               
               Cow position:chr3:42053228-42053044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:624-818
               
               
               Cow position:chr3:15188261-15188456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:624-820
               
               
               Cow position:chr3:1503304-1503495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):139, 100

               
               
               Conread position:632-820
               
               
               Cow position:chr3:69501162-69500972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):48, 173

               
               
               Conread position:632-821
               
               
               Cow position:chr3:21028158-21027969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):44, 152

               
               
               Conread position:634-820
               
               
               Cow position:chr3:59863024-59863211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:635-820
               
               
               Cow position:chr3:58784693-58784507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:639-820
               
               
               Cow position:chr3:10242120-10242302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:651-820
               
               
               Cow position:chr3:52661294-52661470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):27, 73

               
               
               Conread position:708-827
               
               
               Cow position:chr3:68213289-68213410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:103
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):31, 26

               
               
               Conread position:223-820
               
               
               Cow position:chr4:57957839-57958403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:394
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):16, 26

               
               
               Conread position:224-820
               
               
               Cow position:chr4:13494176-13494784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:431
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 21

               
               
               Conread position:225-692
               
               
               Cow position:chr4:45106306-45106790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-812
               
               
               Cow position:chr4:4416905-4417496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr4:160008-160609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 17

               
               
               Conread position:225-820
               
               
               Cow position:chr4:356757-357357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr4:530250-530870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:628
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr4:1929795-1929190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr4:3126650-3127262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr4:5881002-5881607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr4:6567232-6567831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:431
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr4:30472078-30472665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr4:32213010-32213624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 17

               
               
               Conread position:225-820
               
               
               Cow position:chr4:44780379-44779769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:227-820
               
               
               Cow position:chr4:10882399-10883001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 24

               
               
               Conread position:227-820
               
               
               Cow position:chr4:19005459-19004879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:603
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:227-820
               
               
               Cow position:chr4:34178388-34177804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 15

               
               
               Conread position:228-820
               
               
               Cow position:chr4:5443984-5443373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 94

               
               
               Conread position:230-749
               
               
               Cow position:chr4:50981332-50981862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:546
               
               
               Alignm identity:355
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):66, 17

               
               
               Conread position:231-545
               
               
               Cow position:chr4:11110423-11110115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):68, 24

               
               
               Conread position:231-818
               
               
               Cow position:chr4:14755814-14755225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:415
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 14

               
               
               Conread position:232-682
               
               
               Cow position:chr4:31564451-31563969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-805
               
               
               Cow position:chr4:12588184-12588764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:591
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr4:99363-98761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr4:1049404-1048812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr4:6489511-6488916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:608
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr4:12240364-12239779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:606
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr4:16360768-16361373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:627
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr4:16639465-16640062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr4:26876927-26876336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr4:36897229-36897828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr4:57984840-57985443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr4:67682046-67682650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:421
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 13

               
               
               Conread position:232-821
               
               
               Cow position:chr4:20604582-20605132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:598
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-821
               
               
               Cow position:chr4:44726440-44727031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:233-820
               
               
               Cow position:chr4:18337708-18338306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 12

               
               
               Conread position:233-820
               
               
               Cow position:chr4:41955615-41956215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 12

               
               
               Conread position:233-820
               
               
               Cow position:chr4:41959750-41960351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 12

               
               
               Conread position:235-420
               
               
               Cow position:chr4:27294451-27294255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):11, 34

               
               
               Conread position:235-742
               
               
               Cow position:chr4:51042438-51041918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:537
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 24

               
               
               Conread position:238-720
               
               
               Cow position:chr4:69521396-69521874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:325
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):62, 7

               
               
               Conread position:241-555
               
               
               Cow position:chr4:44924671-44924361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 222

               
               
               Conread position:242-482
               
               
               Cow position:chr4:967215-966964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):26, 11

               
               
               Conread position:242-560
               
               
               Cow position:chr4:68110169-68109847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):49, 81

               
               
               Conread position:242-801
               
               
               Cow position:chr4:45407835-45408395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:573
               
               
               Alignm identity:354
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):138, 44

               
               
               Conread position:242-806
               
               
               Cow position:chr4:50806379-50806931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:574
               
               
               Alignm identity:355
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):43, 193

               
               
               Conread position:242-820
               
               
               Cow position:chr4:17093003-17092412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 119

               
               
               Conread position:242-820
               
               
               Cow position:chr4:18423661-18423070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:603
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 245

               
               
               Conread position:242-820
               
               
               Cow position:chr4:43881968-43882557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 11

               
               
               Conread position:245-472
               
               
               Cow position:chr4:65915901-65916131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:180
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):54, 80

               
               
               Conread position:245-507
               
               
               Cow position:chr4:28832427-28832675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):55, 75

               
               
               Conread position:245-743
               
               
               Cow position:chr4:182706-183224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:526
               
               
               Alignm identity:336
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):53, 220

               
               
               Conread position:245-820
               
               
               Cow position:chr4:14199044-14199617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:594
               
               
               Alignm identity:373
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):58, 150

               
               
               Conread position:245-820
               
               
               Cow position:chr4:25598632-25598034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 247

               
               
               Conread position:245-820
               
               
               Cow position:chr4:43318775-43318184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:598
               
               
               Alignm identity:431
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 214

               
               
               Conread position:245-828
               
               
               Cow position:chr4:41191738-41191172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:598
               
               
               Alignm identity:406
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 77

               
               
               Conread position:245-828
               
               
               Cow position:chr4:42405473-42406075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 33

               
               
               Conread position:246-821
               
               
               Cow position:chr4:17925097-17924508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:598
               
               
               Alignm identity:415
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 13

               
               
               Conread position:248-421
               
               
               Cow position:chr4:20181912-20182080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):102, 19

               
               
               Conread position:248-792
               
               
               Cow position:chr4:9847346-9846783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:569
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 232

               
               
               Conread position:248-820
               
               
               Cow position:chr4:50975496-50976069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:596
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 79

               
               
               Conread position:253-820
               
               
               Cow position:chr4:34183753-34183226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:576
               
               
               Alignm identity:374
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):46, 69

               
               
               Conread position:256-646
               
               
               Cow position:chr4:4178132-4178524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 69

               
               
               Conread position:259-820
               
               
               Cow position:chr4:60263281-60262719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:584
               
               
               Alignm identity:389
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 63

               
               
               Conread position:262-820
               
               
               Cow position:chr4:5925961-5925406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:573
               
               
               Alignm identity:359
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):32, 157

               
               
               Conread position:268-820
               
               
               Cow position:chr4:9355272-9355831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:567
               
               
               Alignm identity:408
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 27

               
               
               Conread position:274-819
               
               
               Cow position:chr4:43672416-43672953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:554
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 57

               
               
               Conread position:281-748
               
               
               Cow position:chr4:22474250-22474710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 31

               
               
               Conread position:281-820
               
               
               Cow position:chr4:6206506-6207051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:568
               
               
               Alignm identity:393
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 143

               
               
               Conread position:296-690
               
               
               Cow position:chr4:39268230-39267844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):259, 28

               
               
               Conread position:297-695
               
               
               Cow position:chr4:19252380-19252753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 58

               
               
               Conread position:299-554
               
               
               Cow position:chr4:41428233-41428488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):93, 18

               
               
               Conread position:300-656
               
               
               Cow position:chr4:9647299-9647642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:242
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):30, 84

               
               
               Conread position:323-713
               
               
               Cow position:chr4:66637569-66637169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:253
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):16, 214

               
               
               Conread position:325-586
               
               
               Cow position:chr4:14138991-14139252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):77, 100

               
               
               Conread position:326-749
               
               
               Cow position:chr4:41091485-41091069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:278
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):29, 60

               
               
               Conread position:326-818
               
               
               Cow position:chr4:10093855-10094347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 117

               
               
               Conread position:326-819
               
               
               Cow position:chr4:63428076-63427585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 79

               
               
               Conread position:329-820
               
               
               Cow position:chr4:6615168-6614674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:321
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):11, 57

               
               
               Conread position:345-820
               
               
               Cow position:chr4:50873423-50872968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:304
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):21, 72

               
               
               Conread position:358-828
               
               
               Cow position:chr4:49716771-49717239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 16

               
               
               Conread position:360-755
               
               
               Cow position:chr4:13870978-13871356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 32

               
               
               Conread position:360-820
               
               
               Cow position:chr4:13958159-13958623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 112

               
               
               Conread position:360-820
               
               
               Cow position:chr4:31638935-31638478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:322
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):32, 83

               
               
               Conread position:360-820
               
               
               Cow position:chr4:65665413-65664960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 119

               
               
               Conread position:361-820
               
               
               Cow position:chr4:38930381-38930836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):214, 6

               
               
               Conread position:363-792
               
               
               Cow position:chr4:20067725-20067303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 11

               
               
               Conread position:363-820
               
               
               Cow position:chr4:16060252-16060731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 33

               
               
               Conread position:367-472
               
               
               Cow position:chr4:59357269-59357160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:90
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:367-645
               
               
               Cow position:chr4:42926048-42925767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):25, 106

               
               
               Conread position:367-731
               
               
               Cow position:chr4:47486305-47486675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:260
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):8, 69

               
               
               Conread position:367-819
               
               
               Cow position:chr4:12582421-12581982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:294
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):18, 89

               
               
               Conread position:372-820
               
               
               Cow position:chr4:21359228-21359684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):188, 13

               
               
               Conread position:373-561
               
               
               Cow position:chr4:52268783-52268596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):19, 54

               
               
               Conread position:373-820
               
               
               Cow position:chr4:1952566-1952115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 28

               
               
               Conread position:373-820
               
               
               Cow position:chr4:52963125-52962684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:319
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):19, 40

               
               
               Conread position:374-820
               
               
               Cow position:chr4:33494552-33495007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 97

               
               
               Conread position:376-643
               
               
               Cow position:chr4:43003080-43002818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):9, 78

               
               
               Conread position:376-809
               
               
               Cow position:chr4:51265735-51266157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 49

               
               
               Conread position:376-813
               
               
               Cow position:chr4:6519829-6520234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 18

               
               
               Conread position:376-819
               
               
               Cow position:chr4:22027440-22027003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:297
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):20, 44

               
               
               Conread position:377-797
               
               
               Cow position:chr4:47462824-47463242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:286
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):82, 24

               
               
               Conread position:377-820
               
               
               Cow position:chr4:6865504-6865056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 102

               
               
               Conread position:382-820
               
               
               Cow position:chr4:33596540-33596971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 87

               
               
               Conread position:383-828
               
               
               Cow position:chr4:60627854-60627416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 23

               
               
               Conread position:385-558
               
               
               Cow position:chr4:21135943-21136118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:385-604
               
               
               Cow position:chr4:2089406-2089625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):121, 71

               
               
               Conread position:385-647
               
               
               Cow position:chr4:19742906-19742652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):172, 13

               
               
               Conread position:385-815
               
               
               Cow position:chr4:46574099-46574529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:286
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):79, 39

               
               
               Conread position:385-820
               
               
               Cow position:chr4:47522371-47522800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 85

               
               
               Conread position:389-821
               
               
               Cow position:chr4:17502317-17501878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):163, 86

               
               
               Conread position:395-609
               
               
               Cow position:chr4:58410730-58410930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):178, 58

               
               
               Conread position:398-820
               
               
               Cow position:chr4:14386844-14387274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 77

               
               
               Conread position:398-821
               
               
               Cow position:chr4:27334954-27335392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 77

               
               
               Conread position:401-674
               
               
               Cow position:chr4:39931973-39932249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):120, 53

               
               
               Conread position:401-820
               
               
               Cow position:chr4:28653466-28653043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 74

               
               
               Conread position:414-673
               
               
               Cow position:chr4:493584-493331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):19, 60

               
               
               Conread position:414-812
               
               
               Cow position:chr4:604670-605074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 11

               
               
               Conread position:414-820
               
               
               Cow position:chr4:20236357-20235945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 13

               
               
               Conread position:414-828
               
               
               Cow position:chr4:50847858-50847443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 55

               
               
               Conread position:427-820
               
               
               Cow position:chr4:21258215-21258628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:283
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):16, 30

               
               
               Conread position:432-820
               
               
               Cow position:chr4:34221801-34222200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 24

               
               
               Conread position:434-758
               
               
               Cow position:chr4:54969771-54970097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):14, 19

               
               
               Conread position:435-820
               
               
               Cow position:chr4:3356873-3356482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 40

               
               
               Conread position:457-820
               
               
               Cow position:chr4:19094065-19094430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 20

               
               
               Conread position:457-821
               
               
               Cow position:chr4:65916359-65916715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 20

               
               
               Conread position:458-820
               
               
               Cow position:chr4:8702646-8703005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:249
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):27, 85

               
               
               Conread position:460-654
               
               
               Cow position:chr4:25735553-25735743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):97, 16

               
               
               Conread position:469-820
               
               
               Cow position:chr4:952041-952390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:236
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):65, 18

               
               
               Conread position:488-820
               
               
               Cow position:chr4:22742557-22742882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 57

               
               
               Conread position:489-756
               
               
               Cow position:chr4:11813218-11813496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):55, 150

               
               
               Conread position:498-819
               
               
               Cow position:chr4:28832840-28833165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):54, 12

               
               
               Conread position:499-820
               
               
               Cow position:chr4:41978275-41977935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):58, 89

               
               
               Conread position:501-828
               
               
               Cow position:chr4:18102534-18102192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 7

               
               
               Conread position:505-819
               
               
               Cow position:chr4:13266664-13266363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:209
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):163, 10

               
               
               Conread position:509-809
               
               
               Cow position:chr4:46200594-46200290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):68, 43

               
               
               Conread position:510-820
               
               
               Cow position:chr4:33022505-33022187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):32, 123

               
               
               Conread position:549-799
               
               
               Cow position:chr4:60045761-60045509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):23, 77

               
               
               Conread position:550-820
               
               
               Cow position:chr4:44107232-44106949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):19, 248

               
               
               Conread position:551-731
               
               
               Cow position:chr4:27851432-27851613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):35, 77

               
               
               Conread position:556-820
               
               
               Cow position:chr4:37988527-37988788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:186
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):31, 20

               
               
               Conread position:564-820
               
               
               Cow position:chr4:827404-827660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:189
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):114, 61

               
               
               Conread position:564-827
               
               
               Cow position:chr4:44899484-44899736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:197
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):114, 55

               
               
               Conread position:565-820
               
               
               Cow position:chr4:65041433-65041183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):111, 60

               
               
               Conread position:565-828
               
               
               Cow position:chr4:11109871-11109617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):113, 11

               
               
               Conread position:571-820
               
               
               Cow position:chr4:2104833-2105075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):40, 49

               
               
               Conread position:571-820
               
               
               Cow position:chr4:17244309-17244558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 54

               
               
               Conread position:572-820
               
               
               Cow position:chr4:48028065-48028310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):104, 53

               
               
               Conread position:576-819
               
               
               Cow position:chr4:61986066-61985828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):102, 20

               
               
               Conread position:577-808
               
               
               Cow position:chr4:45297358-45297129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):101, 48

               
               
               Conread position:579-818
               
               
               Cow position:chr4:14139586-14139821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):99, 44

               
               
               Conread position:607-820
               
               
               Cow position:chr4:6267951-6267739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):71, 6

               
               
               Conread position:624-800
               
               
               Cow position:chr4:46666176-46666352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):54, 15

               
               
               Conread position:624-820
               
               
               Cow position:chr4:2089613-2089806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):54, 22

               
               
               Conread position:624-820
               
               
               Cow position:chr4:20241774-20241972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:624-821
               
               
               Cow position:chr4:12459315-12459120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):47, 110

               
               
               Conread position:630-800
               
               
               Cow position:chr4:4178642-4178810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):48, 96

               
               
               Conread position:632-817
               
               
               Cow position:chr4:1366741-1366560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):46, 19

               
               
               Conread position:636-820
               
               
               Cow position:chr4:68837731-68837545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:640-819
               
               
               Cow position:chr4:59291282-59291102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):38, 145

               
               
               Conread position:641-828
               
               
               Cow position:chr4:43867466-43867654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:646-820
               
               
               Cow position:chr4:67797627-67797455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):29, 65

               
               
               Conread position:225-599
               
               
               Cow position:chr5:42505948-42506339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:277
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-710
               
               
               Cow position:chr5:27908325-27907826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-788
               
               
               Cow position:chr5:18664727-18665288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:578
               
               
               Alignm identity:406
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr5:4018251-4017659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr5:4757233-4756628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr5:10775325-10774708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:626
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr5:12731766-12731160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr5:23959385-23958775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr5:26078249-26077638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:442
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr5:31100478-31099881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr5:32773709-32774320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr5:35301042-35301653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:448
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr5:46004912-46004322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:608
               
               
               Alignm identity:404
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr5:47830134-47829520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr5:59061580-59062191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:443
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 20

               
               
               Conread position:227-623
               
               
               Cow position:chr5:12642799-12642388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 18

               
               
               Conread position:227-820
               
               
               Cow position:chr5:18560457-18559855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 18

               
               
               Conread position:227-828
               
               
               Cow position:chr5:45701260-45701880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:443
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 18

               
               
               Conread position:228-820
               
               
               Cow position:chr5:46777339-46777948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:431
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 239

               
               
               Conread position:228-820
               
               
               Cow position:chr5:58196961-58197571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:394
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 94

               
               
               Conread position:229-820
               
               
               Cow position:chr5:37733294-37733908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:431
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 16

               
               
               Conread position:231-788
               
               
               Cow position:chr5:59283267-59283839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:580
               
               
               Alignm identity:397
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 14

               
               
               Conread position:231-805
               
               
               Cow position:chr5:4386194-4386768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:589
               
               
               Alignm identity:389
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 16

               
               
               Conread position:232-658
               
               
               Cow position:chr5:54791682-54791241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-726
               
               
               Cow position:chr5:49519511-49520009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-788
               
               
               Cow position:chr5:23669178-23668610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:590
               
               
               Alignm identity:395
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 13

               
               
               Conread position:232-818
               
               
               Cow position:chr5:7274795-7275382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 10

               
               
               Conread position:232-819
               
               
               Cow position:chr5:6153952-6153343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 13

               
               
               Conread position:232-819
               
               
               Cow position:chr5:55628942-55629537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:606
               
               
               Alignm identity:431
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr5:2915400-2915989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:601
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr5:3503155-3502551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr5:3786878-3787492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr5:5104173-5104770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:606
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr5:10855866-10855263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:431
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr5:30580290-30580890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr5:46737626-46737039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:606
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr5:48807788-48807176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr5:57481588-57480984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr5:64781065-64780459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 13

               
               
               Conread position:233-806
               
               
               Cow position:chr5:3965398-3965995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 12

               
               
               Conread position:233-808
               
               
               Cow position:chr5:43193457-43192882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:584
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 241

               
               
               Conread position:234-776
               
               
               Cow position:chr5:1341082-1340535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:561
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 140

               
               
               Conread position:235-821
               
               
               Cow position:chr5:26183795-26184413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:628
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 26

               
               
               Conread position:236-586
               
               
               Cow position:chr5:60716660-60716305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):40, 9

               
               
               Conread position:236-820
               
               
               Cow position:chr5:18400737-18400149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 37

               
               
               Conread position:242-458
               
               
               Cow position:chr5:48137388-48137164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):40, 30

               
               
               Conread position:242-696
               
               
               Cow position:chr5:51308900-51308436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:328
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):56, 17

               
               
               Conread position:242-759
               
               
               Cow position:chr5:23686931-23686422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:530
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 17

               
               
               Conread position:242-787
               
               
               Cow position:chr5:46808271-46808825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:562
               
               
               Alignm identity:398
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 245

               
               
               Conread position:242-815
               
               
               Cow position:chr5:62361639-62362186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:580
               
               
               Alignm identity:364
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):142, 213

               
               
               Conread position:242-820
               
               
               Cow position:chr5:18121523-18120927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:602
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 244

               
               
               Conread position:242-820
               
               
               Cow position:chr5:18273721-18274302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 80

               
               
               Conread position:242-820
               
               
               Cow position:chr5:23229953-23230533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:596
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 25

               
               
               Conread position:242-820
               
               
               Cow position:chr5:31707522-31708118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:603
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 80

               
               
               Conread position:242-820
               
               
               Cow position:chr5:46664977-46665552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:598
               
               
               Alignm identity:396
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 86

               
               
               Conread position:242-820
               
               
               Cow position:chr5:47893585-47893013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:590
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 237

               
               
               Conread position:243-767
               
               
               Cow position:chr5:24151740-24152270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:545
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 81

               
               
               Conread position:244-581
               
               
               Cow position:chr5:24107722-24107388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:238
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):55, 173

               
               
               Conread position:245-450
               
               
               Cow position:chr5:27197282-27197492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:245-542
               
               
               Cow position:chr5:73488597-73488296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):54, 234

               
               
               Conread position:245-757
               
               
               Cow position:chr5:29767090-29767607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:529
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 75

               
               
               Conread position:245-800
               
               
               Cow position:chr5:34287258-34286701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:575
               
               
               Alignm identity:367
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):66, 29

               
               
               Conread position:245-803
               
               
               Cow position:chr5:34297904-34298432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:573
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 84

               
               
               Conread position:245-820
               
               
               Cow position:chr5:988099-987513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 77

               
               
               Conread position:245-820
               
               
               Cow position:chr5:10842422-10841825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 76

               
               
               Conread position:245-820
               
               
               Cow position:chr5:24099628-24100204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:593
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 163

               
               
               Conread position:245-820
               
               
               Cow position:chr5:58151818-58151250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:593
               
               
               Alignm identity:395
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 84

               
               
               Conread position:245-821
               
               
               Cow position:chr5:46668906-46669484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:398
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 76

               
               
               Conread position:248-817
               
               
               Cow position:chr5:40923674-40923123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:583
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 74

               
               
               Conread position:248-820
               
               
               Cow position:chr5:10813785-10813195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:596
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 238

               
               
               Conread position:248-820
               
               
               Cow position:chr5:29434752-29434208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:584
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 184

               
               
               Conread position:251-503
               
               
               Cow position:chr5:28949913-28949654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):49, 229

               
               
               Conread position:251-560
               
               
               Cow position:chr5:20311383-20311071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):49, 209

               
               
               Conread position:259-778
               
               
               Cow position:chr5:41960760-41960239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:541
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 62

               
               
               Conread position:259-820
               
               
               Cow position:chr5:27003212-27003787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:587
               
               
               Alignm identity:400
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 61

               
               
               Conread position:261-649
               
               
               Cow position:chr5:34697580-34697980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 218

               
               
               Conread position:261-670
               
               
               Cow position:chr5:46645918-46646355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:299
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):39, 201

               
               
               Conread position:262-767
               
               
               Cow position:chr5:15375691-15376187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 127

               
               
               Conread position:262-787
               
               
               Cow position:chr5:14784387-14783847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:550
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 144

               
               
               Conread position:263-716
               
               
               Cow position:chr5:32951882-32952345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:318
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):37, 156

               
               
               Conread position:263-820
               
               
               Cow position:chr5:40789050-40789612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:575
               
               
               Alignm identity:403
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 110

               
               
               Conread position:264-683
               
               
               Cow position:chr5:32281784-32281360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 59

               
               
               Conread position:264-767
               
               
               Cow position:chr5:53006603-53007105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 53

               
               
               Conread position:264-814
               
               
               Cow position:chr5:18885552-18884982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:576
               
               
               Alignm identity:400
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 211

               
               
               Conread position:268-803
               
               
               Cow position:chr5:52434733-52435273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:554
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 24

               
               
               Conread position:270-820
               
               
               Cow position:chr5:7143059-7142518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:564
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 172

               
               
               Conread position:297-528
               
               
               Cow position:chr5:14344415-14344187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):33, 127

               
               
               Conread position:297-820
               
               
               Cow position:chr5:4070239-4070771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:540
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 185

               
               
               Conread position:298-820
               
               
               Cow position:chr5:7811233-7810695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:551
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 78

               
               
               Conread position:302-637
               
               
               Cow position:chr5:70950959-70950624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:225
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):27, 172

               
               
               Conread position:315-692
               
               
               Cow position:chr5:41554295-41553935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:267
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):12, 129

               
               
               Conread position:316-820
               
               
               Cow position:chr5:11115712-11115219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:388
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 144

               
               
               Conread position:322-747
               
               
               Cow position:chr5:42751525-42751952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:295
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):27, 84

               
               
               Conread position:325-620
               
               
               Cow position:chr5:55653796-55653490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):23, 155

               
               
               Conread position:325-767
               
               
               Cow position:chr5:61081166-61080707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 42

               
               
               Conread position:325-818
               
               
               Cow position:chr5:48533037-48533509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 85

               
               
               Conread position:326-731
               
               
               Cow position:chr5:67911344-67911745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:277
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):15, 41

               
               
               Conread position:331-792
               
               
               Cow position:chr5:62760203-62759736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 140

               
               
               Conread position:340-821
               
               
               Cow position:chr5:53945908-53946384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 127

               
               
               Conread position:354-817
               
               
               Cow position:chr5:35527026-35527477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 34

               
               
               Conread position:359-820
               
               
               Cow position:chr5:69622672-69623151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:325
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):34, 51

               
               
               Conread position:360-820
               
               
               Cow position:chr5:6587500-6587033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 119

               
               
               Conread position:360-820
               
               
               Cow position:chr5:13046741-13047193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 112

               
               
               Conread position:365-560
               
               
               Cow position:chr5:18114488-18114296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):15, 106

               
               
               Conread position:367-714
               
               
               Cow position:chr5:53703124-53702782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:236
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):21, 33

               
               
               Conread position:370-623
               
               
               Cow position:chr5:16917379-16917125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):10, 98

               
               
               Conread position:371-767
               
               
               Cow position:chr5:54620149-54620545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 86

               
               
               Conread position:372-821
               
               
               Cow position:chr5:9038037-9037591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 43

               
               
               Conread position:373-542
               
               
               Cow position:chr5:40757561-40757722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):16, 60

               
               
               Conread position:373-550
               
               
               Cow position:chr5:53624721-53624553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):15, 82

               
               
               Conread position:373-798
               
               
               Cow position:chr5:26980553-26980958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:282
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):184, 20

               
               
               Conread position:373-803
               
               
               Cow position:chr5:28333376-28332950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:299
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):15, 24

               
               
               Conread position:373-820
               
               
               Cow position:chr5:34190013-34190477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 100

               
               
               Conread position:373-820
               
               
               Cow position:chr5:74027233-74026775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:308
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):14, 62

               
               
               Conread position:373-820
               
               
               Cow position:chr5:75624804-75625250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:314
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):159, 11

               
               
               Conread position:374-718
               
               
               Cow position:chr5:30051632-30051291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:236
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):173, 78

               
               
               Conread position:375-820
               
               
               Cow position:chr5:37655019-37655453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 97

               
               
               Conread position:376-820
               
               
               Cow position:chr5:18549270-18549703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:303
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):10, 94

               
               
               Conread position:376-821
               
               
               Cow position:chr5:32167020-32166587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 44

               
               
               Conread position:377-755
               
               
               Cow position:chr5:28014141-28014519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:261
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):180, 99

               
               
               Conread position:379-805
               
               
               Cow position:chr5:24295725-24296150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 75

               
               
               Conread position:382-638
               
               
               Cow position:chr5:41897379-41897124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):131, 68

               
               
               Conread position:382-820
               
               
               Cow position:chr5:47078102-47078528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:290
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):25, 51

               
               
               Conread position:388-820
               
               
               Cow position:chr5:10919956-10920390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 87

               
               
               Conread position:389-528
               
               
               Cow position:chr5:11129247-11129112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:107
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:389-731
               
               
               Cow position:chr5:44219159-44219509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:231
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):80, 96

               
               
               Conread position:395-820
               
               
               Cow position:chr5:23755333-23754930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:284
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):145, 45

               
               
               Conread position:401-743
               
               
               Cow position:chr5:25636942-25637302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:242
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):26, 54

               
               
               Conread position:401-821
               
               
               Cow position:chr5:18887426-18886998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:275
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):53, 179

               
               
               Conread position:406-805
               
               
               Cow position:chr5:55834675-55834273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:273
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):59, 12

               
               
               Conread position:406-820
               
               
               Cow position:chr5:49757564-49757155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:285
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):143, 13

               
               
               Conread position:411-758
               
               
               Cow position:chr5:3822106-3822443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:241
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):167, 45

               
               
               Conread position:421-820
               
               
               Cow position:chr5:49223339-49222935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 47

               
               
               Conread position:425-758
               
               
               Cow position:chr5:62823642-62823980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 44

               
               
               Conread position:428-817
               
               
               Cow position:chr5:28242179-28242566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:265
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):33, 211

               
               
               Conread position:435-748
               
               
               Cow position:chr5:62202815-62203128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):19, 35

               
               
               Conread position:456-689
               
               
               Cow position:chr5:6534357-6534590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:162
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):34, 54

               
               
               Conread position:467-820
               
               
               Cow position:chr5:41956228-41955873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 47

               
               
               Conread position:471-820
               
               
               Cow position:chr5:27197806-27198163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 21

               
               
               Conread position:472-779
               
               
               Cow position:chr5:50947829-50948147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 15

               
               
               Conread position:480-820
               
               
               Cow position:chr5:76096257-76096606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 132

               
               
               Conread position:483-731
               
               
               Cow position:chr5:21918629-21918862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):195, 26

               
               
               Conread position:483-767
               
               
               Cow position:chr5:2459190-2459484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 153

               
               
               Conread position:484-820
               
               
               Cow position:chr5:34201729-34201385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:236
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):78, 17

               
               
               Conread position:493-820
               
               
               Cow position:chr5:41376637-41376299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 143

               
               
               Conread position:496-819
               
               
               Cow position:chr5:4684584-4684251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 139

               
               
               Conread position:498-676
               
               
               Cow position:chr5:23236138-23236325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):54, 136

               
               
               Conread position:504-820
               
               
               Cow position:chr5:307185-306859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:229
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):48, 135

               
               
               Conread position:521-820
               
               
               Cow position:chr5:40131358-40131047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 116

               
               
               Conread position:547-818
               
               
               Cow position:chr5:51744565-51744827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:203
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):131, 25

               
               
               Conread position:547-820
               
               
               Cow position:chr5:2975073-2975345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:198
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):131, 17

               
               
               Conread position:547-828
               
               
               Cow position:chr5:31122304-31122024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:202
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):131, 25

               
               
               Conread position:555-762
               
               
               Cow position:chr5:13536571-13536774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):54, 10

               
               
               Conread position:558-821
               
               
               Cow position:chr5:12681758-12681499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):120, 67

               
               
               Conread position:564-820
               
               
               Cow position:chr5:37378425-37378681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:185
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):114, 61

               
               
               Conread position:564-820
               
               
               Cow position:chr5:73487768-73487504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):112, 58

               
               
               Conread position:565-820
               
               
               Cow position:chr5:14658150-14657897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:192
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):113, 34

               
               
               Conread position:565-820
               
               
               Cow position:chr5:57816393-57816138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:177
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):113, 60

               
               
               Conread position:569-820
               
               
               Cow position:chr5:5666279-5666036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):107, 42

               
               
               Conread position:570-820
               
               
               Cow position:chr5:43988409-43988653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:187
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):108, 27

               
               
               Conread position:589-820
               
               
               Cow position:chr5:20108225-20108457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):89, 36

               
               
               Conread position:596-820
               
               
               Cow position:chr5:34697982-34698206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:164
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):80, 7

               
               
               Conread position:606-828
               
               
               Cow position:chr5:20310854-20310634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):70, 7

               
               
               Conread position:607-767
               
               
               Cow position:chr5:24104124-24103965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):69, 18

               
               
               Conread position:617-741
               
               
               Cow position:chr5:34903473-34903597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:98
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):59, 6

               
               
               Conread position:622-820
               
               
               Cow position:chr5:65324716-65324911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):94, 52

               
               
               Conread position:626-818
               
               
               Cow position:chr5:54860614-54860418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):52, 132

               
               
               Conread position:630-822
               
               
               Cow position:chr5:46646339-46646533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:632-820
               
               
               Cow position:chr5:41928862-41928672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):46, 143

               
               
               Conread position:640-828
               
               
               Cow position:chr5:12642061-12641870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:656-820
               
               
               Cow position:chr5:58191372-58191205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:663-818
               
               
               Cow position:chr5:53810384-53810541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):15, 69

               
               
               Conread position:225-541
               
               
               Cow position:chr6:46573861-46574183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:235
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-550
               
               
               Cow position:chr6:3784851-3785182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-555
               
               
               Cow position:chr6:17597223-17596892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:240
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-646
               
               
               Cow position:chr6:46603162-46602725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-666
               
               
               Cow position:chr6:50646100-50645641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-716
               
               
               Cow position:chr6:13105144-13105623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-746
               
               
               Cow position:chr6:13944993-13945529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:546
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 20

               
               
               Conread position:225-776
               
               
               Cow position:chr6:11871562-11871006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:570
               
               
               Alignm identity:395
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr6:2375771-2376367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr6:2877603-2876992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:438
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 21

               
               
               Conread position:225-820
               
               
               Cow position:chr6:7140259-7139648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr6:12665234-12664628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr6:26669779-26669170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr6:39333785-39333177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr6:40276170-40276775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr6:40379550-40378939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:446
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr6:44149473-44148856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:626
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr6:45587033-45587640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr6:65820889-65820278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-821
               
               
               Cow position:chr6:39910418-39911025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:446
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:226-731
               
               
               Cow position:chr6:28134003-28134512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:524
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 19

               
               
               Conread position:227-528
               
               
               Cow position:chr6:48579902-48579599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):73, 18

               
               
               Conread position:227-622
               
               
               Cow position:chr6:58027760-58028156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:245
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):74, 18

               
               
               Conread position:227-820
               
               
               Cow position:chr6:10339530-10338953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:404
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):72, 18

               
               
               Conread position:227-820
               
               
               Cow position:chr6:28104774-28104171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 18

               
               
               Conread position:227-820
               
               
               Cow position:chr6:28169987-28170601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 18

               
               
               Conread position:227-820
               
               
               Cow position:chr6:58065823-58066408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:604
               
               
               Alignm identity:408
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 18

               
               
               Conread position:227-821
               
               
               Cow position:chr6:10644822-10645413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 18

               
               
               Conread position:228-793
               
               
               Cow position:chr6:43792484-43791903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:590
               
               
               Alignm identity:398
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 17

               
               
               Conread position:229-820
               
               
               Cow position:chr6:40326503-40327111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 16

               
               
               Conread position:231-465
               
               
               Cow position:chr6:36527392-36527639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):69, 16

               
               
               Conread position:231-518
               
               
               Cow position:chr6:14761823-14761543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):56, 14

               
               
               Conread position:231-676
               
               
               Cow position:chr6:15278723-15278278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:206
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):73, 14

               
               
               Conread position:231-805
               
               
               Cow position:chr6:13310266-13309701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:595
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 14

               
               
               Conread position:231-820
               
               
               Cow position:chr6:7178198-7177601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 16

               
               
               Conread position:231-820
               
               
               Cow position:chr6:30273804-30273201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 14

               
               
               Conread position:231-821
               
               
               Cow position:chr6:66546577-66547166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:421
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 14

               
               
               Conread position:232-555
               
               
               Cow position:chr6:29312592-29312923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:237
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-643
               
               
               Cow position:chr6:17047144-17047574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:295
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-644
               
               
               Cow position:chr6:3276281-3275854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:294
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-647
               
               
               Cow position:chr6:51087032-51087458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr6:50515-49913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr6:703308-703904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr6:1535485-1534890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:606
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr6:5948692-5948086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr6:15140086-15139481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr6:20560012-20559429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr6:21973761-21974362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr6:25215295-25215907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:431
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr6:25792667-25792065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr6:35875621-35875018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr6:40553483-40552889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr6:40866233-40865634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:421
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr6:41228536-41229136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr6:55542173-55541567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr6:65842706-65843308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 10

               
               
               Conread position:232-820
               
               
               Cow position:chr6:66232899-66233492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:603
               
               
               Alignm identity:404
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 10

               
               
               Conread position:233-589
               
               
               Cow position:chr6:27471670-27472030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:250
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):67, 127

               
               
               Conread position:233-823
               
               
               Cow position:chr6:27170670-27171276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:431
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 89

               
               
               Conread position:237-820
               
               
               Cow position:chr6:39954960-39955539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:391
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 87

               
               
               Conread position:242-450
               
               
               Cow position:chr6:2577040-2577256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):58, 116

               
               
               Conread position:242-472
               
               
               Cow position:chr6:17244313-17244075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):62, 209

               
               
               Conread position:242-528
               
               
               Cow position:chr6:9264188-9264481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:214
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):56, 244

               
               
               Conread position:242-762
               
               
               Cow position:chr6:16053207-16053744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:546
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 80

               
               
               Conread position:242-820
               
               
               Cow position:chr6:10250507-10249915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 126

               
               
               Conread position:242-820
               
               
               Cow position:chr6:15478273-15478863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:598
               
               
               Alignm identity:402
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 177

               
               
               Conread position:242-820
               
               
               Cow position:chr6:65946172-65945598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:590
               
               
               Alignm identity:359
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):58, 150

               
               
               Conread position:245-818
               
               
               Cow position:chr6:15926465-15925871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:431
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 163

               
               
               Conread position:245-820
               
               
               Cow position:chr6:914736-915324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:598
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 234

               
               
               Conread position:245-820
               
               
               Cow position:chr6:1821510-1820936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:595
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 135

               
               
               Conread position:245-820
               
               
               Cow position:chr6:3888403-3887825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:596
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 218

               
               
               Conread position:245-820
               
               
               Cow position:chr6:28187720-28187146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:598
               
               
               Alignm identity:415
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 241

               
               
               Conread position:245-820
               
               
               Cow position:chr6:28490466-28489877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 77

               
               
               Conread position:245-820
               
               
               Cow position:chr6:34891021-34890435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:594
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 239

               
               
               Conread position:248-799
               
               
               Cow position:chr6:8760189-8759625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:572
               
               
               Alignm identity:392
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 77

               
               
               Conread position:248-820
               
               
               Cow position:chr6:330359-329773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:596
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 66

               
               
               Conread position:248-820
               
               
               Cow position:chr6:52694127-52694718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:598
               
               
               Alignm identity:403
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 240

               
               
               Conread position:248-828
               
               
               Cow position:chr6:10632661-10633239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:594
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 61

               
               
               Conread position:251-503
               
               
               Cow position:chr6:60931795-60932053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):49, 228

               
               
               Conread position:251-571
               
               
               Cow position:chr6:539080-539388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):45, 120

               
               
               Conread position:251-820
               
               
               Cow position:chr6:1382211-1381648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:582
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 71

               
               
               Conread position:251-828
               
               
               Cow position:chr6:10679538-10680112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:594
               
               
               Alignm identity:380
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):49, 36

               
               
               Conread position:253-820
               
               
               Cow position:chr6:43618832-43619416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:592
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 69

               
               
               Conread position:255-820
               
               
               Cow position:chr6:51715640-51716225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:592
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 197

               
               
               Conread position:256-550
               
               
               Cow position:chr6:64717136-64717437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:218
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):44, 224

               
               
               Conread position:256-820
               
               
               Cow position:chr6:47042103-47041512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:595
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 385

               
               
               Conread position:256-820
               
               
               Cow position:chr6:51731194-51731773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:585
               
               
               Alignm identity:415
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 231

               
               
               Conread position:259-820
               
               
               Cow position:chr6:28703592-28703017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:581
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 58

               
               
               Conread position:261-821
               
               
               Cow position:chr6:58601602-58602173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:582
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 9

               
               
               Conread position:262-527
               
               
               Cow position:chr6:13316351-13316077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):35, 204

               
               
               Conread position:262-820
               
               
               Cow position:chr6:8203297-8203887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 230

               
               
               Conread position:262-820
               
               
               Cow position:chr6:9843046-9843600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:577
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 33

               
               
               Conread position:262-820
               
               
               Cow position:chr6:10609993-10610535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:577
               
               
               Alignm identity:378
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):38, 134

               
               
               Conread position:262-820
               
               
               Cow position:chr6:66745116-66745685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:579
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 129

               
               
               Conread position:262-820
               
               
               Cow position:chr6:67265007-67265576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:579
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 129

               
               
               Conread position:264-674
               
               
               Cow position:chr6:25360166-25360586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:291
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):35, 58

               
               
               Conread position:277-820
               
               
               Cow position:chr6:3487293-3486731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:569
               
               
               Alignm identity:393
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 210

               
               
               Conread position:281-812
               
               
               Cow position:chr6:6156687-6157223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:553
               
               
               Alignm identity:351
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):45, 18

               
               
               Conread position:281-820
               
               
               Cow position:chr6:59617249-59617782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:555
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 180

               
               
               Conread position:297-514
               
               
               Cow position:chr6:87802-88016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):33, 159

               
               
               Conread position:297-595
               
               
               Cow position:chr6:34196537-34196834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:211
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):33, 175

               
               
               Conread position:297-744
               
               
               Cow position:chr6:41166-40681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:328
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):33, 235

               
               
               Conread position:297-820
               
               
               Cow position:chr6:47048024-47047488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:542
               
               
               Alignm identity:396
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 184

               
               
               Conread position:299-820
               
               
               Cow position:chr6:21836012-21835506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:528
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 153

               
               
               Conread position:299-820
               
               
               Cow position:chr6:44262308-44261787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:536
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 18

               
               
               Conread position:299-828
               
               
               Cow position:chr6:40316744-40317290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:561
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 175

               
               
               Conread position:302-740
               
               
               Cow position:chr6:33899084-33898665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 132

               
               
               Conread position:323-666
               
               
               Cow position:chr6:66227120-66227450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:226
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):39, 132

               
               
               Conread position:324-709
               
               
               Cow position:chr6:68028119-68028507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:278
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):17, 137

               
               
               Conread position:325-654
               
               
               Cow position:chr6:28766854-28766514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 155

               
               
               Conread position:325-724
               
               
               Cow position:chr6:29223863-29224262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:258
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):44, 72

               
               
               Conread position:325-749
               
               
               Cow position:chr6:27333186-27333610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:291
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):218, 67

               
               
               Conread position:326-820
               
               
               Cow position:chr6:44001862-44002364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 152

               
               
               Conread position:329-828
               
               
               Cow position:chr6:3571784-3572295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 151

               
               
               Conread position:330-820
               
               
               Cow position:chr6:13848259-13848759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 29

               
               
               Conread position:335-749
               
               
               Cow position:chr6:13863338-13862914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:284
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):26, 13

               
               
               Conread position:340-822
               
               
               Cow position:chr6:50529681-50530148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 30

               
               
               Conread position:360-728
               
               
               Cow position:chr6:60375346-60374975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):77, 34

               
               
               Conread position:360-820
               
               
               Cow position:chr6:476767-477232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 33

               
               
               Conread position:361-565
               
               
               Cow position:chr6:30677060-30676868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):28, 77

               
               
               Conread position:361-820
               
               
               Cow position:chr6:3150460-3150928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 62

               
               
               Conread position:361-820
               
               
               Cow position:chr6:31199046-31199537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:340
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):31, 146

               
               
               Conread position:363-700
               
               
               Cow position:chr6:41553505-41553827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:231
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):313, 106

               
               
               Conread position:363-820
               
               
               Cow position:chr6:16591201-16591649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 94

               
               
               Conread position:365-729
               
               
               Cow position:chr6:49523416-49523788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:253
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):18, 103

               
               
               Conread position:373-809
               
               
               Cow position:chr6:12626945-12627380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 37

               
               
               Conread position:373-814
               
               
               Cow position:chr6:19492523-19492952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:287
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):11, 43

               
               
               Conread position:374-559
               
               
               Cow position:chr6:64790568-64790751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):11, 95

               
               
               Conread position:374-652
               
               
               Cow position:chr6:1404076-1403792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):178, 21

               
               
               Conread position:374-732
               
               
               Cow position:chr6:20648845-20648491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:248
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):10, 22

               
               
               Conread position:374-748
               
               
               Cow position:chr6:7834737-7835106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:286
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):19, 32

               
               
               Conread position:374-820
               
               
               Cow position:chr6:1410142-1409690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 21

               
               
               Conread position:375-767
               
               
               Cow position:chr6:47625303-47625701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 33

               
               
               Conread position:377-820
               
               
               Cow position:chr6:15891950-15891511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:296
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):186, 49

               
               
               Conread position:378-828
               
               
               Cow position:chr6:12533077-12533511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:312
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):126, 21

               
               
               Conread position:380-563
               
               
               Cow position:chr6:69391278-69391096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):72, 76

               
               
               Conread position:385-723
               
               
               Cow position:chr6:58004494-58004831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:231
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):144, 33

               
               
               Conread position:385-820
               
               
               Cow position:chr6:48420311-48419897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:282
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):7, 15

               
               
               Conread position:389-820
               
               
               Cow position:chr6:33108189-33107769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:286
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):160, 59

               
               
               Conread position:390-820
               
               
               Cow position:chr6:6081611-6081208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:301
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):13, 40

               
               
               Conread position:390-821
               
               
               Cow position:chr6:50636128-50636564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):142, 66

               
               
               Conread position:394-684
               
               
               Cow position:chr6:59644547-59644257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):153, 73

               
               
               Conread position:395-638
               
               
               Cow position:chr6:207504-207735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:401-819
               
               
               Cow position:chr6:15709984-15710390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:281
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):76, 46

               
               
               Conread position:406-820
               
               
               Cow position:chr6:1098748-1098357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:284
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):161, 50

               
               
               Conread position:410-820
               
               
               Cow position:chr6:15966527-15966113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:292
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):134, 56

               
               
               Conread position:413-613
               
               
               Cow position:chr6:16995678-16995884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):139, 54

               
               
               Conread position:414-820
               
               
               Cow position:chr6:16598894-16599311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:268
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):33, 212

               
               
               Conread position:420-820
               
               
               Cow position:chr6:5749211-5749617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 18

               
               
               Conread position:421-820
               
               
               Cow position:chr6:6185539-6185935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:270
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):123, 31

               
               
               Conread position:421-821
               
               
               Cow position:chr6:38272837-38273262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:291
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):42, 229

               
               
               Conread position:432-820
               
               
               Cow position:chr6:27528718-27528327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 10

               
               
               Conread position:436-821
               
               
               Cow position:chr6:238539-238152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:253
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):22, 64

               
               
               Conread position:437-800
               
               
               Cow position:chr6:58461016-58460649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:265
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):122, 38

               
               
               Conread position:444-808
               
               
               Cow position:chr6:42441684-42442052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 105

               
               
               Conread position:444-814
               
               
               Cow position:chr6:32416851-32417222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):42, 150

               
               
               Conread position:453-820
               
               
               Cow position:chr6:24240717-24241097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 185

               
               
               Conread position:456-818
               
               
               Cow position:chr6:35939329-35939691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:232
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):12, 90

               
               
               Conread position:456-820
               
               
               Cow position:chr6:11723871-11723506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 19

               
               
               Conread position:457-820
               
               
               Cow position:chr6:184222-183850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 9

               
               
               Conread position:460-796
               
               
               Cow position:chr6:7159945-7160284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:229
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):94, 9

               
               
               Conread position:485-820
               
               
               Cow position:chr6:36528558-36528890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:237
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):5, 32

               
               
               Conread position:514-819
               
               
               Cow position:chr6:11165440-11165129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):50, 113

               
               
               Conread position:520-803
               
               
               Cow position:chr6:6158099-6158385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):15, 33

               
               
               Conread position:545-820
               
               
               Cow position:chr6:61208752-61209024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):32, 24

               
               
               Conread position:546-806
               
               
               Cow position:chr6:58028144-58028405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):19, 76

               
               
               Conread position:546-820
               
               
               Cow position:chr6:17243878-17243609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):64, 23

               
               
               Conread position:547-820
               
               
               Cow position:chr6:64717740-64718014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:191
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):129, 17

               
               
               Conread position:549-799
               
               
               Cow position:chr6:15921355-15921601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):10, 30

               
               
               Conread position:564-820
               
               
               Cow position:chr6:17596859-17596603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:183
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):114, 61

               
               
               Conread position:564-820
               
               
               Cow position:chr6:57471104-57471360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 61

               
               
               Conread position:565-813
               
               
               Cow position:chr6:18973022-18972778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):113, 22

               
               
               Conread position:565-820
               
               
               Cow position:chr6:69144008-69144261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:197
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):83, 17

               
               
               Conread position:565-828
               
               
               Cow position:chr6:27375484-27375222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:193
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):111, 55

               
               
               Conread position:565-828
               
               
               Cow position:chr6:65907350-65907088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):216, 60

               
               
               Conread position:570-818
               
               
               Cow position:chr6:28475160-28475414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):27, 31

               
               
               Conread position:581-748
               
               
               Cow position:chr6:66837604-66837771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):19, 31

               
               
               Conread position:598-820
               
               
               Cow position:chr6:26777697-26777477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):8, 31

               
               
               Conread position:607-820
               
               
               Cow position:chr6:14390409-14390621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:163
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):71, 6

               
               
               Conread position:615-818
               
               
               Cow position:chr6:16516050-16516256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:635-820
               
               
               Cow position:chr6:17047847-17048033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:643-818
               
               
               Cow position:chr6:7193657-7193476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):35, 89

               
               
               Conread position:662-820
               
               
               Cow position:chr6:34136605-34136446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:679-820
               
               
               Cow position:chr6:50111370-50111511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:107
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:224-658
               
               
               Cow position:chr7:24878707-24878265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 21

               
               
               Conread position:225-528
               
               
               Cow position:chr7:11447739-11448050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:222
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):72, 20

               
               
               Conread position:225-599
               
               
               Cow position:chr7:66036349-66036733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 20

               
               
               Conread position:225-716
               
               
               Cow position:chr7:3299993-3299489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-750
               
               
               Cow position:chr7:6647490-6646958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:549
               
               
               Alignm identity:389
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr7:6630126-6629519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr7:20060658-20061269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr7:52763456-52764068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:447
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 17

               
               
               Conread position:225-820
               
               
               Cow position:chr7:54649071-54649683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:440
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr7:65811996-65812606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:227-550
               
               
               Cow position:chr7:19990194-19990519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):72, 18

               
               
               Conread position:227-820
               
               
               Cow position:chr7:51015439-51016024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:604
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 18

               
               
               Conread position:227-821
               
               
               Cow position:chr7:14214189-14213598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 18

               
               
               Conread position:227-822
               
               
               Cow position:chr7:3156643-3157258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:627
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 96

               
               
               Conread position:228-820
               
               
               Cow position:chr7:20774157-20773561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:431
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 217

               
               
               Conread position:228-820
               
               
               Cow position:chr7:25440679-25441281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 40

               
               
               Conread position:228-820
               
               
               Cow position:chr7:27101113-27100508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 94

               
               
               Conread position:229-555
               
               
               Cow position:chr7:5663743-5664075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:236
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):67, 250

               
               
               Conread position:231-820
               
               
               Cow position:chr7:59680034-59680630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 14

               
               
               Conread position:232-523
               
               
               Cow position:chr7:24058631-24058912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):69, 30

               
               
               Conread position:232-655
               
               
               Cow position:chr7:66905904-66906344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-742
               
               
               Cow position:chr7:1371462-1370941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:539
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-762
               
               
               Cow position:chr7:54786214-54785663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:563
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 198

               
               
               Conread position:232-820
               
               
               Cow position:chr7:546026-546619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr7:5308932-5308324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr7:20798260-20797670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr7:21126480-21125896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:603
               
               
               Alignm identity:415
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr7:21233826-21233223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr7:24807291-24806702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:606
               
               
               Alignm identity:419
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr7:34487096-34487696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr7:38397998-38398600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr7:64239822-64239209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-822
               
               
               Cow position:chr7:14138413-14137809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:233-754
               
               
               Cow position:chr7:57563916-57563388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:539
               
               
               Alignm identity:389
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 227

               
               
               Conread position:233-819
               
               
               Cow position:chr7:20533131-20533741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:626
               
               
               Alignm identity:431
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 92

               
               
               Conread position:234-749
               
               
               Cow position:chr7:68334127-68334609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:349
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):63, 17

               
               
               Conread position:234-770
               
               
               Cow position:chr7:25136043-25136579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:556
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 17

               
               
               Conread position:234-820
               
               
               Cow position:chr7:45947957-45947369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 89

               
               
               Conread position:234-820
               
               
               Cow position:chr7:68439242-68439807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:393
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 11

               
               
               Conread position:235-695
               
               
               Cow position:chr7:26852639-26853094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 20

               
               
               Conread position:235-818
               
               
               Cow position:chr7:61578692-61579281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:603
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 10

               
               
               Conread position:240-772
               
               
               Cow position:chr7:41875088-41874554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:552
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 215

               
               
               Conread position:241-820
               
               
               Cow position:chr7:13532717-13532125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 205

               
               
               Conread position:241-828
               
               
               Cow position:chr7:29471653-29472248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 87

               
               
               Conread position:242-550
               
               
               Cow position:chr7:39554299-39553995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):57, 186

               
               
               Conread position:242-645
               
               
               Cow position:chr7:27583533-27583129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:278
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):58, 83

               
               
               Conread position:242-804
               
               
               Cow position:chr7:67676287-67676838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:574
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 55

               
               
               Conread position:242-815
               
               
               Cow position:chr7:59138835-59139389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:590
               
               
               Alignm identity:383
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):58, 145

               
               
               Conread position:242-820
               
               
               Cow position:chr7:6721337-6721923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 48

               
               
               Conread position:242-820
               
               
               Cow position:chr7:21311639-21312226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:604
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 80

               
               
               Conread position:242-820
               
               
               Cow position:chr7:33311759-33311165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 17

               
               
               Conread position:242-820
               
               
               Cow position:chr7:57084137-57084703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:590
               
               
               Alignm identity:359
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):146, 62

               
               
               Conread position:242-820
               
               
               Cow position:chr7:58994776-58995344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:596
               
               
               Alignm identity:404
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 80

               
               
               Conread position:242-821
               
               
               Cow position:chr7:45915562-45916120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:584
               
               
               Alignm identity:370
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):153, 62

               
               
               Conread position:242-828
               
               
               Cow position:chr7:42871334-42871933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 80

               
               
               Conread position:245-460
               
               
               Cow position:chr7:19046543-19046324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):52, 80

               
               
               Conread position:245-471
               
               
               Cow position:chr7:46900877-46900640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:245-642
               
               
               Cow position:chr7:40268779-40268380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 200

               
               
               Conread position:245-814
               
               
               Cow position:chr7:67800017-67800600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:598
               
               
               Alignm identity:400
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 77

               
               
               Conread position:245-820
               
               
               Cow position:chr7:33332753-33333346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:608
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 79

               
               
               Conread position:245-820
               
               
               Cow position:chr7:63386928-63387516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:604
               
               
               Alignm identity:419
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 251

               
               
               Conread position:248-820
               
               
               Cow position:chr7:10430226-10429642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 210

               
               
               Conread position:248-820
               
               
               Cow position:chr7:55536729-55536142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:419
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 183

               
               
               Conread position:248-821
               
               
               Cow position:chr7:20211872-20211310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:584
               
               
               Alignm identity:386
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 74

               
               
               Conread position:248-821
               
               
               Cow position:chr7:67495302-67495884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:391
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 23

               
               
               Conread position:251-519
               
               
               Cow position:chr7:34546562-34546836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):47, 23

               
               
               Conread position:251-828
               
               
               Cow position:chr7:6690-7280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:604
               
               
               Alignm identity:442
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 173

               
               
               Conread position:252-626
               
               
               Cow position:chr7:48635636-48636003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:261
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):46, 67

               
               
               Conread position:252-786
               
               
               Cow position:chr7:995958-996487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:547
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 73

               
               
               Conread position:253-556
               
               
               Cow position:chr7:57211352-57211661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):44, 69

               
               
               Conread position:253-749
               
               
               Cow position:chr7:25419919-25420414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:327
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):38, 99

               
               
               Conread position:255-463
               
               
               Cow position:chr7:3124670-3124890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:256-820
               
               
               Cow position:chr7:62445942-62445368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:589
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 210

               
               
               Conread position:259-646
               
               
               Cow position:chr7:1452851-1453251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:272
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):42, 220

               
               
               Conread position:259-820
               
               
               Cow position:chr7:55041282-55040703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:586
               
               
               Alignm identity:421
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 63

               
               
               Conread position:259-820
               
               
               Cow position:chr7:64350693-64351270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:587
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 231

               
               
               Conread position:262-519
               
               
               Cow position:chr7:26460502-26460763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):38, 131

               
               
               Conread position:262-658
               
               
               Cow position:chr7:65457975-65457563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:281
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):34, 61

               
               
               Conread position:262-676
               
               
               Cow position:chr7:3548483-3548073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:278
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):36, 58

               
               
               Conread position:262-819
               
               
               Cow position:chr7:526182-526728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:569
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 101

               
               
               Conread position:262-820
               
               
               Cow position:chr7:49829117-49828553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:580
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 110

               
               
               Conread position:264-820
               
               
               Cow position:chr7:67429787-67430339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:574
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 58

               
               
               Conread position:265-820
               
               
               Cow position:chr7:20514572-20514005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:576
               
               
               Alignm identity:400
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 217

               
               
               Conread position:268-820
               
               
               Cow position:chr7:21986635-21987186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:573
               
               
               Alignm identity:398
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 6

               
               
               Conread position:271-820
               
               
               Cow position:chr7:27788170-27788738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:573
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 154

               
               
               Conread position:280-751
               
               
               Cow position:chr7:47164546-47165029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:310
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):15, 45

               
               
               Conread position:281-820
               
               
               Cow position:chr7:7259757-7260301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:561
               
               
               Alignm identity:397
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 41

               
               
               Conread position:282-814
               
               
               Cow position:chr7:24934312-24933780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:542
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 50

               
               
               Conread position:297-567
               
               
               Cow position:chr7:40320443-40320701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:194
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):253, 20

               
               
               Conread position:297-585
               
               
               Cow position:chr7:30303199-30303498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 151

               
               
               Conread position:297-647
               
               
               Cow position:chr7:3518405-3518741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):44, 23

               
               
               Conread position:297-780
               
               
               Cow position:chr7:63949801-63949336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 22

               
               
               Conread position:297-820
               
               
               Cow position:chr7:445014-444476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:543
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 23

               
               
               Conread position:297-820
               
               
               Cow position:chr7:1609391-1608854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:547
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 18

               
               
               Conread position:297-820
               
               
               Cow position:chr7:8143735-8143194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:548
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 190

               
               
               Conread position:297-820
               
               
               Cow position:chr7:48805190-48804653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:544
               
               
               Alignm identity:392
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 20

               
               
               Conread position:298-820
               
               
               Cow position:chr7:5261666-5261139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:533
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 155

               
               
               Conread position:299-819
               
               
               Cow position:chr7:67813755-67814256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:532
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 84

               
               
               Conread position:300-820
               
               
               Cow position:chr7:18445493-18444974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:530
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):261, 24

               
               
               Conread position:307-828
               
               
               Cow position:chr7:39097280-39096752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:538
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 10

               
               
               Conread position:323-742
               
               
               Cow position:chr7:27128750-27129162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:284
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):25, 38

               
               
               Conread position:325-769
               
               
               Cow position:chr7:58376607-58376178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 64

               
               
               Conread position:325-788
               
               
               Cow position:chr7:65872347-65871859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 132

               
               
               Conread position:325-820
               
               
               Cow position:chr7:20557019-20557526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 155

               
               
               Conread position:326-551
               
               
               Cow position:chr7:34417196-34416976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):13, 25

               
               
               Conread position:326-590
               
               
               Cow position:chr7:1822271-1821997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):15, 228

               
               
               Conread position:326-767
               
               
               Cow position:chr7:1012211-1011781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:290
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):116, 41

               
               
               Conread position:326-820
               
               
               Cow position:chr7:39793147-39793639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 131

               
               
               Conread position:330-767
               
               
               Cow position:chr7:1403198-1402762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 24

               
               
               Conread position:330-820
               
               
               Cow position:chr7:40006626-40006157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:317
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):298, 14

               
               
               Conread position:334-585
               
               
               Cow position:chr7:4093931-4093688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):101, 85

               
               
               Conread position:336-735
               
               
               Cow position:chr7:60856766-60856372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 136

               
               
               Conread position:340-820
               
               
               Cow position:chr7:34221535-34221065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 41

               
               
               Conread position:343-820
               
               
               Cow position:chr7:11584713-11584237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:310
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):146, 39

               
               
               Conread position:345-820
               
               
               Cow position:chr7:33405090-33404602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 108

               
               
               Conread position:345-828
               
               
               Cow position:chr7:58337731-58337256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 32

               
               
               Conread position:360-818
               
               
               Cow position:chr7:59685127-59685594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 52

               
               
               Conread position:361-820
               
               
               Cow position:chr7:25094081-25093634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:309
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):51, 25

               
               
               Conread position:365-798
               
               
               Cow position:chr7:22187285-22186855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:293
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):38, 11

               
               
               Conread position:367-820
               
               
               Cow position:chr7:31095948-31095481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 112

               
               
               Conread position:373-692
               
               
               Cow position:chr7:909641-909956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:213
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):18, 81

               
               
               Conread position:373-745
               
               
               Cow position:chr7:43871829-43872200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:256
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):11, 98

               
               
               Conread position:374-528
               
               
               Cow position:chr7:49730534-49730684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:374-767
               
               
               Cow position:chr7:61045889-61045497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:260
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):138, 38

               
               
               Conread position:376-598
               
               
               Cow position:chr7:65452733-65452953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):181, 25

               
               
               Conread position:376-812
               
               
               Cow position:chr7:54581187-54581632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 72

               
               
               Conread position:376-818
               
               
               Cow position:chr7:47974966-47974514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):183, 63

               
               
               Conread position:376-821
               
               
               Cow position:chr7:21313248-21313694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 66

               
               
               Conread position:385-799
               
               
               Cow position:chr7:24867913-24867492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:283
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):35, 57

               
               
               Conread position:414-820
               
               
               Cow position:chr7:61809378-61809791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 54

               
               
               Conread position:415-818
               
               
               Cow position:chr7:32187411-32187001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:288
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):71, 28

               
               
               Conread position:419-818
               
               
               Cow position:chr7:39132854-39133267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:291
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):132, 50

               
               
               Conread position:422-820
               
               
               Cow position:chr7:14528-14128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 53

               
               
               Conread position:440-820
               
               
               Cow position:chr7:6628007-6627623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 35

               
               
               Conread position:440-828
               
               
               Cow position:chr7:21852453-21852065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:269
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):26, 14

               
               
               Conread position:452-799
               
               
               Cow position:chr7:25433789-25434135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):69, 17

               
               
               Conread position:453-820
               
               
               Cow position:chr7:11462730-11462356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 22

               
               
               Conread position:457-749
               
               
               Cow position:chr7:44216151-44216439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):119, 12

               
               
               Conread position:458-820
               
               
               Cow position:chr7:33760434-33760788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):100, 31

               
               
               Conread position:470-820
               
               
               Cow position:chr7:19046026-19045664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 17

               
               
               Conread position:471-820
               
               
               Cow position:chr7:23250045-23250403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 16

               
               
               Conread position:473-783
               
               
               Cow position:chr7:5249047-5248735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):17, 33

               
               
               Conread position:473-820
               
               
               Cow position:chr7:66070699-66070347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 14

               
               
               Conread position:480-820
               
               
               Cow position:chr7:3126120-3126472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 156

               
               
               Conread position:481-828
               
               
               Cow position:chr7:43396981-43396622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 157

               
               
               Conread position:505-820
               
               
               Cow position:chr7:20369439-20369114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):54, 121

               
               
               Conread position:505-828
               
               
               Cow position:chr7:30118027-30117697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 134

               
               
               Conread position:526-820
               
               
               Cow position:chr7:33070932-33070629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):33, 107

               
               
               Conread position:546-818
               
               
               Cow position:chr7:51938643-51938900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):23, 33

               
               
               Conread position:547-820
               
               
               Cow position:chr7:8336874-8337145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:199
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):131, 17

               
               
               Conread position:547-820
               
               
               Cow position:chr7:46747499-46747773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:193
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):18, 79

               
               
               Conread position:564-818
               
               
               Cow position:chr7:68896185-68896433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):111, 28

               
               
               Conread position:564-820
               
               
               Cow position:chr7:33785791-33786047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:185
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):118, 61

               
               
               Conread position:564-821
               
               
               Cow position:chr7:60728927-60728673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):114, 61

               
               
               Conread position:565-820
               
               
               Cow position:chr7:37021573-37021833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:186
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):38, 49

               
               
               Conread position:565-828
               
               
               Cow position:chr7:49731007-49731266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):113, 11

               
               
               Conread position:570-828
               
               
               Cow position:chr7:30304410-30304652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:193
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:571-820
               
               
               Cow position:chr7:34416814-34416566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):107, 58

               
               
               Conread position:585-745
               
               
               Cow position:chr7:2966066-2966224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):91, 40

               
               
               Conread position:605-816
               
               
               Cow position:chr7:66214154-66213946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):103, 20

               
               
               Conread position:612-820
               
               
               Cow position:chr7:34736759-34736962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):66, 16

               
               
               Conread position:636-820
               
               
               Cow position:chr7:13778263-13778447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):42, 138

               
               
               Conread position:636-828
               
               
               Cow position:chr7:3518878-3519066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):42, 98

               
               
               Conread position:641-820
               
               
               Cow position:chr7:949143-949326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:641-820
               
               
               Cow position:chr7:40201555-40201735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:641-828
               
               
               Cow position:chr7:3121600-3121787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):49, 114

               
               
               Conread position:642-820
               
               
               Cow position:chr7:33067123-33066944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):15, 49

               
               
               Conread position:646-820
               
               
               Cow position:chr7:27474633-27474811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:646-820
               
               
               Cow position:chr7:66906852-66907029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):32, 55

               
               
               Conread position:671-820
               
               
               Cow position:chr7:37010336-37010186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:675-820
               
               
               Cow position:chr7:40320904-40321045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:225-528
               
               
               Cow position:chr8:6064425-6064116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-580
               
               
               Cow position:chr8:27579757-27580117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-595
               
               
               Cow position:chr8:22128934-22129300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:261
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):75, 20

               
               
               Conread position:225-649
               
               
               Cow position:chr8:47454237-47453801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-680
               
               
               Cow position:chr8:37654501-37654029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-767
               
               
               Cow position:chr8:14631308-14630747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:569
               
               
               Alignm identity:404
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr8:1347892-1347281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr8:22570947-22570335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr8:33325409-33326020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:444
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr8:37656198-37655586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:444
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr8:37932453-37933065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:445
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 20

               
               
               Conread position:227-781
               
               
               Cow position:chr8:47075523-47076083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:578
               
               
               Alignm identity:396
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 18

               
               
               Conread position:227-820
               
               
               Cow position:chr8:3786002-3786599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 18

               
               
               Conread position:227-820
               
               
               Cow position:chr8:5017544-5018147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 18

               
               
               Conread position:227-820
               
               
               Cow position:chr8:54017186-54016582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:415
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 19

               
               
               Conread position:227-828
               
               
               Cow position:chr8:30487015-30486434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:391
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):73, 18

               
               
               Conread position:228-448
               
               
               Cow position:chr8:25409093-25409323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):72, 17

               
               
               Conread position:228-820
               
               
               Cow position:chr8:34349035-34349640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 146

               
               
               Conread position:230-820
               
               
               Cow position:chr8:23772008-23772602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 15

               
               
               Conread position:230-828
               
               
               Cow position:chr8:9539323-9538737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 22

               
               
               Conread position:231-819
               
               
               Cow position:chr8:14927511-14926915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 14

               
               
               Conread position:231-820
               
               
               Cow position:chr8:3855657-3855055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 14

               
               
               Conread position:231-820
               
               
               Cow position:chr8:12450392-12451010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:628
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 14

               
               
               Conread position:231-820
               
               
               Cow position:chr8:36635138-36634536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:431
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 14

               
               
               Conread position:231-820
               
               
               Cow position:chr8:50929748-50929136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 14

               
               
               Conread position:231-821
               
               
               Cow position:chr8:19190029-19190662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:647
               
               
               Alignm identity:423
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):68, 14

               
               
               Conread position:232-776
               
               
               Cow position:chr8:19051817-19052377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:567
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-818
               
               
               Cow position:chr8:4687772-4688367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:604
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr8:8400745-8400134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr8:10742299-10741677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:630
               
               
               Alignm identity:438
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr8:11525088-11525659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 27

               
               
               Conread position:232-820
               
               
               Cow position:chr8:24914967-24914351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:431
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr8:25775303-25774678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:634
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr8:32318183-32317585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr8:33589747-33590352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:440
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr8:39194848-39194243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:431
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr8:47660951-47660352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr8:60061771-60062378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:233-817
               
               
               Cow position:chr8:11803194-11803777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:604
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 27

               
               
               Conread position:233-820
               
               
               Cow position:chr8:2887119-2887721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 12

               
               
               Conread position:233-820
               
               
               Cow position:chr8:7162266-7162866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:608
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 45

               
               
               Conread position:233-820
               
               
               Cow position:chr8:50995140-50995756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:625
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 13

               
               
               Conread position:233-821
               
               
               Cow position:chr8:29008006-29008588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 158

               
               
               Conread position:234-749
               
               
               Cow position:chr8:8911850-8912379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:535
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 245

               
               
               Conread position:234-812
               
               
               Cow position:chr8:42419058-42418464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:401
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):64, 26

               
               
               Conread position:235-546
               
               
               Cow position:chr8:44108087-44108394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):60, 10

               
               
               Conread position:237-459
               
               
               Cow position:chr8:42429090-42429319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):34, 22

               
               
               Conread position:238-820
               
               
               Cow position:chr8:42158618-42158053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:382
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):66, 7

               
               
               Conread position:238-820
               
               
               Cow position:chr8:47674219-47674805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 7

               
               
               Conread position:240-514
               
               
               Cow position:chr8:5681683-5681411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):63, 188

               
               
               Conread position:241-820
               
               
               Cow position:chr8:14590524-14589908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:623
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 264

               
               
               Conread position:241-821
               
               
               Cow position:chr8:10749734-10750317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:419
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 82

               
               
               Conread position:242-519
               
               
               Cow position:chr8:38605833-38605554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):58, 80

               
               
               Conread position:242-599
               
               
               Cow position:chr8:1152924-1152542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:266
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):56, 251

               
               
               Conread position:242-635
               
               
               Cow position:chr8:49697610-49697210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 11

               
               
               Conread position:242-781
               
               
               Cow position:chr8:9736620-9737176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:568
               
               
               Alignm identity:398
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 80

               
               
               Conread position:242-781
               
               
               Cow position:chr8:46949091-46949701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:400
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):62, 463

               
               
               Conread position:242-786
               
               
               Cow position:chr8:32041385-32040827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:566
               
               
               Alignm identity:393
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 80

               
               
               Conread position:242-809
               
               
               Cow position:chr8:42747406-42746836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:589
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 40

               
               
               Conread position:242-818
               
               
               Cow position:chr8:13491743-13492321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:376
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):18, 28

               
               
               Conread position:242-819
               
               
               Cow position:chr8:32436707-32436111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:604
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 80

               
               
               Conread position:242-820
               
               
               Cow position:chr8:1320417-1320986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:592
               
               
               Alignm identity:400
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 140

               
               
               Conread position:242-820
               
               
               Cow position:chr8:25377360-25377946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:602
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 80

               
               
               Conread position:242-820
               
               
               Cow position:chr8:41644294-41643717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:598
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 26

               
               
               Conread position:242-820
               
               
               Cow position:chr8:47068422-47067847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:587
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 56

               
               
               Conread position:242-820
               
               
               Cow position:chr8:53427872-53428457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:603
               
               
               Alignm identity:398
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 79

               
               
               Conread position:243-450
               
               
               Cow position:chr8:49216110-49216323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):58, 152

               
               
               Conread position:245-424
               
               
               Cow position:chr8:35213239-35213430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:245-465
               
               
               Cow position:chr8:19331094-19331321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):53, 177

               
               
               Conread position:245-512
               
               
               Cow position:chr8:49859384-49859117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):55, 77

               
               
               Conread position:245-730
               
               
               Cow position:chr8:31984508-31985022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 210

               
               
               Conread position:245-731
               
               
               Cow position:chr8:17312410-17312934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:529
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 410

               
               
               Conread position:245-818
               
               
               Cow position:chr8:21157411-21156824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 77

               
               
               Conread position:245-820
               
               
               Cow position:chr8:6726616-6726021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:454
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 210

               
               
               Conread position:245-820
               
               
               Cow position:chr8:8517219-8516629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:419
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 30

               
               
               Conread position:245-820
               
               
               Cow position:chr8:58185208-58184646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:585
               
               
               Alignm identity:393
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 23

               
               
               Conread position:245-821
               
               
               Cow position:chr8:32630655-32630063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 77

               
               
               Conread position:248-781
               
               
               Cow position:chr8:55085920-55086457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:552
               
               
               Alignm identity:403
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 72

               
               
               Conread position:248-820
               
               
               Cow position:chr8:42485300-42485879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:596
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 195

               
               
               Conread position:251-820
               
               
               Cow position:chr8:11776008-11776587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:592
               
               
               Alignm identity:394
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 8

               
               
               Conread position:252-820
               
               
               Cow position:chr8:59261540-59260979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:582
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 112

               
               
               Conread position:253-818
               
               
               Cow position:chr8:46218351-46217788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:580
               
               
               Alignm identity:398
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 33

               
               
               Conread position:256-560
               
               
               Cow position:chr8:46051571-46051883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:228
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):44, 231

               
               
               Conread position:256-820
               
               
               Cow position:chr8:25523791-25524361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:582
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 157

               
               
               Conread position:256-828
               
               
               Cow position:chr8:45145916-45145327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:406
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 66

               
               
               Conread position:258-817
               
               
               Cow position:chr8:47947452-47948053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:606
               
               
               Alignm identity:391
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):39, 333

               
               
               Conread position:258-820
               
               
               Cow position:chr8:30496166-30495624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:571
               
               
               Alignm identity:360
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):41, 67

               
               
               Conread position:259-779
               
               
               Cow position:chr8:23135215-23134673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:555
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 63

               
               
               Conread position:260-820
               
               
               Cow position:chr8:50960206-50959644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:580
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 62

               
               
               Conread position:261-547
               
               
               Cow position:chr8:12801805-12802097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):39, 10

               
               
               Conread position:262-676
               
               
               Cow position:chr8:28878411-28878834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 60

               
               
               Conread position:262-691
               
               
               Cow position:chr8:39835293-39835719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:282
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):49, 40

               
               
               Conread position:262-742
               
               
               Cow position:chr8:34525820-34525342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:328
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):38, 109

               
               
               Conread position:262-820
               
               
               Cow position:chr8:42656589-42656028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:574
               
               
               Alignm identity:392
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 216

               
               
               Conread position:262-822
               
               
               Cow position:chr8:2169125-2168550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:584
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 210

               
               
               Conread position:263-729
               
               
               Cow position:chr8:7357540-7357079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:315
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):36, 190

               
               
               Conread position:263-754
               
               
               Cow position:chr8:35543091-35543601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:325
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):37, 181

               
               
               Conread position:263-788
               
               
               Cow position:chr8:45691613-45691085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:542
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 203

               
               
               Conread position:263-812
               
               
               Cow position:chr8:7399687-7399156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:556
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 50

               
               
               Conread position:263-813
               
               
               Cow position:chr8:2235584-2235023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:568
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 246

               
               
               Conread position:263-820
               
               
               Cow position:chr8:34109275-34109847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:578
               
               
               Alignm identity:395
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 236

               
               
               Conread position:264-700
               
               
               Cow position:chr8:42579186-42578740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:309
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):33, 58

               
               
               Conread position:280-820
               
               
               Cow position:chr8:76179-75634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:562
               
               
               Alignm identity:353
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):19, 45

               
               
               Conread position:297-691
               
               
               Cow position:chr8:31251939-31252329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 27

               
               
               Conread position:297-748
               
               
               Cow position:chr8:51666382-51665917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 132

               
               
               Conread position:298-820
               
               
               Cow position:chr8:14256514-14257049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:541
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 183

               
               
               Conread position:304-799
               
               
               Cow position:chr8:6764847-6764346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 16

               
               
               Conread position:309-820
               
               
               Cow position:chr8:9061605-9062120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:530
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 11

               
               
               Conread position:316-821
               
               
               Cow position:chr8:42440465-42439980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 61

               
               
               Conread position:319-820
               
               
               Cow position:chr8:16090316-16090802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 119

               
               
               Conread position:323-822
               
               
               Cow position:chr8:11824358-11824866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 102

               
               
               Conread position:324-553
               
               
               Cow position:chr8:27644275-27644497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):17, 44

               
               
               Conread position:325-574
               
               
               Cow position:chr8:12088294-12088544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:175
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):41, 156

               
               
               Conread position:325-681
               
               
               Cow position:chr8:32647977-32648324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 88

               
               
               Conread position:325-731
               
               
               Cow position:chr8:45184880-45185284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:283
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):15, 108

               
               
               Conread position:325-828
               
               
               Cow position:chr8:47783345-47782850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 64

               
               
               Conread position:326-819
               
               
               Cow position:chr8:11565225-11565716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 123

               
               
               Conread position:328-804
               
               
               Cow position:chr8:21230547-21231039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 141

               
               
               Conread position:329-818
               
               
               Cow position:chr8:21584664-21585151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):215, 53

               
               
               Conread position:335-695
               
               
               Cow position:chr8:36533821-36533447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:247
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):30, 152

               
               
               Conread position:337-820
               
               
               Cow position:chr8:51507357-51506879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:324
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):55, 17

               
               
               Conread position:345-678
               
               
               Cow position:chr8:27537448-27537141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:345-749
               
               
               Cow position:chr8:25438029-25438446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 129

               
               
               Conread position:360-548
               
               
               Cow position:chr8:20135942-20135758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):44, 28

               
               
               Conread position:360-676
               
               
               Cow position:chr8:51857484-51857791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:224
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):29, 95

               
               
               Conread position:360-797
               
               
               Cow position:chr8:8309737-8310157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 63

               
               
               Conread position:360-820
               
               
               Cow position:chr8:3748702-3748230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 113

               
               
               Conread position:360-820
               
               
               Cow position:chr8:30155612-30156070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 119

               
               
               Conread position:361-820
               
               
               Cow position:chr8:14255685-14256152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 46

               
               
               Conread position:364-820
               
               
               Cow position:chr8:44700495-44700950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 109

               
               
               Conread position:365-820
               
               
               Cow position:chr8:18054243-18054700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 74

               
               
               Conread position:365-820
               
               
               Cow position:chr8:38392135-38392595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 84

               
               
               Conread position:373-770
               
               
               Cow position:chr8:20355612-20355997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:268
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):7, 39

               
               
               Conread position:373-820
               
               
               Cow position:chr8:11834035-11834495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 69

               
               
               Conread position:373-820
               
               
               Cow position:chr8:39819963-39820421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 106

               
               
               Conread position:374-786
               
               
               Cow position:chr8:24871257-24870859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 33

               
               
               Conread position:374-820
               
               
               Cow position:chr8:45794236-45793786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 79

               
               
               Conread position:374-828
               
               
               Cow position:chr8:56884055-56884504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 19

               
               
               Conread position:375-700
               
               
               Cow position:chr8:42469193-42469504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):14, 51

               
               
               Conread position:376-628
               
               
               Cow position:chr8:5032469-5032719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):14, 52

               
               
               Conread position:376-820
               
               
               Cow position:chr8:35470820-35471271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 99

               
               
               Conread position:378-788
               
               
               Cow position:chr8:46454281-46453894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:282
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):171, 91

               
               
               Conread position:385-820
               
               
               Cow position:chr8:48787898-48788321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 71

               
               
               Conread position:387-828
               
               
               Cow position:chr8:47887373-47887821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 45

               
               
               Conread position:388-726
               
               
               Cow position:chr8:9963974-9963644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 33

               
               
               Conread position:389-820
               
               
               Cow position:chr8:36919910-36920320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:281
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):290, 66

               
               
               Conread position:397-783
               
               
               Cow position:chr8:9639412-9639810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:275
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):27, 81

               
               
               Conread position:401-820
               
               
               Cow position:chr8:4292682-4293099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:270
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):45, 79

               
               
               Conread position:403-828
               
               
               Cow position:chr8:42154726-42154298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:300
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):138, 37

               
               
               Conread position:412-829
               
               
               Cow position:chr8:38576642-38576211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 77

               
               
               Conread position:421-820
               
               
               Cow position:chr8:12313853-12313434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 212

               
               
               Conread position:424-819
               
               
               Cow position:chr8:38584553-38584152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 45

               
               
               Conread position:434-633
               
               
               Cow position:chr8:49296595-49296405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:435-820
               
               
               Cow position:chr8:47490065-47490448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:268
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):95, 41

               
               
               Conread position:436-749
               
               
               Cow position:chr8:20278470-20278764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:228
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):201, 33

               
               
               Conread position:444-783
               
               
               Cow position:chr8:18292391-18292049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):99, 25

               
               
               Conread position:456-703
               
               
               Cow position:chr8:44946-44690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):34, 177

               
               
               Conread position:458-675
               
               
               Cow position:chr8:39591652-39591432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):99, 17

               
               
               Conread position:458-820
               
               
               Cow position:chr8:18483373-18483733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:238
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):21, 62

               
               
               Conread position:474-828
               
               
               Cow position:chr8:18210836-18210476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 13

               
               
               Conread position:476-659
               
               
               Cow position:chr8:46632070-46631882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):14, 155

               
               
               Conread position:480-820
               
               
               Cow position:chr8:19332191-19332542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 153

               
               
               Conread position:481-820
               
               
               Cow position:chr8:34660279-34660624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:241
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):195, 35

               
               
               Conread position:482-809
               
               
               Cow position:chr8:25412241-25412576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):8, 141

               
               
               Conread position:489-820
               
               
               Cow position:chr8:49218353-49218711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:248
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:490-748
               
               
               Cow position:chr8:13316254-13316523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):67, 51

               
               
               Conread position:492-820
               
               
               Cow position:chr8:21250856-21251195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 147

               
               
               Conread position:501-781
               
               
               Cow position:chr8:35213656-35213935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 29

               
               
               Conread position:510-820
               
               
               Cow position:chr8:51068349-51068028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 126

               
               
               Conread position:543-820
               
               
               Cow position:chr8:24227991-24228249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):133, 6

               
               
               Conread position:546-807
               
               
               Cow position:chr8:24887361-24887610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):130, 16

               
               
               Conread position:546-807
               
               
               Cow position:chr8:38605477-38605221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):132, 30

               
               
               Conread position:546-828
               
               
               Cow position:chr8:12804478-12804753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):39, 26

               
               
               Conread position:547-820
               
               
               Cow position:chr8:37093822-37093554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):129, 17

               
               
               Conread position:547-820
               
               
               Cow position:chr8:48103545-48103811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):131, 16

               
               
               Conread position:554-820
               
               
               Cow position:chr8:30482344-30482082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):123, 16

               
               
               Conread position:565-820
               
               
               Cow position:chr8:44108861-44109114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):43, 26

               
               
               Conread position:565-821
               
               
               Cow position:chr8:2386903-2387159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:184
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):111, 59

               
               
               Conread position:570-820
               
               
               Cow position:chr8:1121100-1121346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):105, 21

               
               
               Conread position:580-820
               
               
               Cow position:chr8:42429400-42429642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:185
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):95, 31

               
               
               Conread position:607-821
               
               
               Cow position:chr8:1152511-1152298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):71, 6

               
               
               Conread position:612-820
               
               
               Cow position:chr8:24190727-24190935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):66, 13

               
               
               Conread position:619-820
               
               
               Cow position:chr8:9944152-9943957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):59, 6

               
               
               Conread position:623-820
               
               
               Cow position:chr8:44083567-44083766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:638-819
               
               
               Cow position:chr8:41949022-41949206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:641-819
               
               
               Cow position:chr8:51525703-51525881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):37, 15

               
               
               Conread position:641-820
               
               
               Cow position:chr8:49295260-49295083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):37, 59

               
               
               Conread position:642-828
               
               
               Cow position:chr8:40891507-40891320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:694-819
               
               
               Cow position:chr8:44190-44065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:95
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:181-689
               
               
               Cow position:chr9:21110500-21111017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:526
               
               
               Alignm identity:329
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):43, 19

               
               
               Conread position:225-599
               
               
               Cow position:chr9:46859449-46859058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-788
               
               
               Cow position:chr9:44384273-44384853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:588
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 21

               
               
               Conread position:225-812
               
               
               Cow position:chr9:1250987-1250384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-818
               
               
               Cow position:chr9:17063369-17062766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr9:779808-779200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr9:2212151-2212761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr9:6977346-6977939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:383
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):77, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr9:25188115-25188711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 14

               
               
               Conread position:225-820
               
               
               Cow position:chr9:28678985-28679577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr9:30827750-30828363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr9:31065731-31066340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr9:47042972-47043582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:440
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chr9:50791726-50792337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:431
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 20

               
               
               Conread position:225-821
               
               
               Cow position:chr9:51211694-51212304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:227-495
               
               
               Cow position:chr9:59447361-59447628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):75, 18

               
               
               Conread position:227-752
               
               
               Cow position:chr9:7158932-7158387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:557
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 18

               
               
               Conread position:227-820
               
               
               Cow position:chr9:1995375-1994785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 18

               
               
               Conread position:227-820
               
               
               Cow position:chr9:17304961-17304354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 18

               
               
               Conread position:230-669
               
               
               Cow position:chr9:2497959-2497505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 15

               
               
               Conread position:231-808
               
               
               Cow position:chr9:30435591-30436170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 14

               
               
               Conread position:231-820
               
               
               Cow position:chr9:7061060-7060444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:628
               
               
               Alignm identity:421
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 12

               
               
               Conread position:231-820
               
               
               Cow position:chr9:37161793-37161192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 15

               
               
               Conread position:232-541
               
               
               Cow position:chr9:10322823-10323136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-575
               
               
               Cow position:chr9:16176789-16177117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:242
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-639
               
               
               Cow position:chr9:60276995-60276577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 13

               
               
               Conread position:232-663
               
               
               Cow position:chr9:47003206-47003641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-676
               
               
               Cow position:chr9:3005216-3004767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-728
               
               
               Cow position:chr9:22654596-22655109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-749
               
               
               Cow position:chr9:29627737-29627200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:544
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 13

               
               
               Conread position:232-752
               
               
               Cow position:chr9:10937615-10938146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:541
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 13

               
               
               Conread position:232-781
               
               
               Cow position:chr9:35315861-35315289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:584
               
               
               Alignm identity:388
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 93

               
               
               Conread position:232-781
               
               
               Cow position:chr9:42310698-42311261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:571
               
               
               Alignm identity:398
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 10

               
               
               Conread position:232-786
               
               
               Cow position:chr9:32969967-32970530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:577
               
               
               Alignm identity:404
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 13

               
               
               Conread position:232-818
               
               
               Cow position:chr9:651007-650405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 23

               
               
               Conread position:232-818
               
               
               Cow position:chr9:19158519-19157909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 13

               
               
               Conread position:232-819
               
               
               Cow position:chr9:4533514-4534115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-819
               
               
               Cow position:chr9:27783208-27783806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr9:6250319-6250906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:602
               
               
               Alignm identity:403
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr9:21410317-21410927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr9:28022826-28023421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr9:30673395-30674001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr9:31808597-31809197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:608
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 13

               
               
               Conread position:232-820
               
               
               Cow position:chr9:51181157-51180558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:431
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:233-800
               
               
               Cow position:chr9:221488-220936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:584
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 12

               
               
               Conread position:233-805
               
               
               Cow position:chr9:7016899-7017462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:583
               
               
               Alignm identity:364
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):71, 153

               
               
               Conread position:233-820
               
               
               Cow position:chr9:5004993-5005607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:625
               
               
               Alignm identity:438
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 12

               
               
               Conread position:233-820
               
               
               Cow position:chr9:20939340-20939931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:415
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 12

               
               
               Conread position:234-828
               
               
               Cow position:chr9:50698325-50698920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 11

               
               
               Conread position:238-751
               
               
               Cow position:chr9:28014630-28014136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:528
               
               
               Alignm identity:339
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):12, 56

               
               
               Conread position:238-809
               
               
               Cow position:chr9:4666207-4666786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 7

               
               
               Conread position:238-820
               
               
               Cow position:chr9:54925574-54926157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:601
               
               
               Alignm identity:408
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 7

               
               
               Conread position:240-498
               
               
               Cow position:chr9:26736779-26737044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):22, 224

               
               
               Conread position:240-820
               
               
               Cow position:chr9:38677172-38677766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:601
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 5

               
               
               Conread position:242-635
               
               
               Cow position:chr9:3167958-3168344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:268
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):140, 47

               
               
               Conread position:242-676
               
               
               Cow position:chr9:3963101-3962647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:317
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):58, 184

               
               
               Conread position:242-767
               
               
               Cow position:chr9:3936404-3935888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:537
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 87

               
               
               Conread position:242-804
               
               
               Cow position:chr9:26083528-26082954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:590
               
               
               Alignm identity:394
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 157

               
               
               Conread position:242-820
               
               
               Cow position:chr9:130135-129574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:591
               
               
               Alignm identity:404
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 171

               
               
               Conread position:242-820
               
               
               Cow position:chr9:27935406-27936002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:603
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 80

               
               
               Conread position:242-820
               
               
               Cow position:chr9:59428039-59428623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:594
               
               
               Alignm identity:396
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 107

               
               
               Conread position:243-778
               
               
               Cow position:chr9:3727632-3728169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:553
               
               
               Alignm identity:406
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 82

               
               
               Conread position:245-487
               
               
               Cow position:chr9:29329668-29329912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):49, 121

               
               
               Conread position:245-643
               
               
               Cow position:chr9:29027179-29026763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:288
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):52, 242

               
               
               Conread position:245-649
               
               
               Cow position:chr9:59481764-59481348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 213

               
               
               Conread position:245-755
               
               
               Cow position:chr9:1981305-1981817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:527
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 78

               
               
               Conread position:245-820
               
               
               Cow position:chr9:59537130-59537723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:602
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 14

               
               
               Conread position:245-821
               
               
               Cow position:chr9:37970175-37969586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:419
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 175

               
               
               Conread position:248-484
               
               
               Cow position:chr9:20307975-20307731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):49, 70

               
               
               Conread position:248-701
               
               
               Cow position:chr9:49303622-49303174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:310
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):44, 77

               
               
               Conread position:248-816
               
               
               Cow position:chr9:2871358-2871950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:408
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 74

               
               
               Conread position:248-818
               
               
               Cow position:chr9:13474736-13474150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:598
               
               
               Alignm identity:404
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 74

               
               
               Conread position:248-820
               
               
               Cow position:chr9:18508787-18508204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:589
               
               
               Alignm identity:404
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 228

               
               
               Conread position:251-828
               
               
               Cow position:chr9:44819186-44819763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:594
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 29

               
               
               Conread position:252-820
               
               
               Cow position:chr9:828069-827487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:591
               
               
               Alignm identity:408
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 70

               
               
               Conread position:253-560
               
               
               Cow position:chr9:4836301-4835990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 200

               
               
               Conread position:255-794
               
               
               Cow position:chr9:9365431-9364904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:555
               
               
               Alignm identity:345
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):7, 82

               
               
               Conread position:256-820
               
               
               Cow position:chr9:9014127-9014692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:586
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 203

               
               
               Conread position:261-748
               
               
               Cow position:chr9:24980876-24980389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:314
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):39, 168

               
               
               Conread position:262-637
               
               
               Cow position:chr9:2053972-2054353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:257
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):39, 162

               
               
               Conread position:262-805
               
               
               Cow position:chr9:25034515-25033954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:568
               
               
               Alignm identity:403
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 60

               
               
               Conread position:262-815
               
               
               Cow position:chr9:5141761-5142314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:570
               
               
               Alignm identity:394
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 92

               
               
               Conread position:262-818
               
               
               Cow position:chr9:4942763-4942188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:582
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 60

               
               
               Conread position:262-819
               
               
               Cow position:chr9:30488643-30489209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:584
               
               
               Alignm identity:377
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):38, 211

               
               
               Conread position:262-820
               
               
               Cow position:chr9:3309671-3310236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:577
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 59

               
               
               Conread position:262-820
               
               
               Cow position:chr9:4283016-4283579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:582
               
               
               Alignm identity:386
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 222

               
               
               Conread position:263-812
               
               
               Cow position:chr9:25632968-25632400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:575
               
               
               Alignm identity:363
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):36, 212

               
               
               Conread position:264-647
               
               
               Cow position:chr9:59447568-59447956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:247
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):78, 133

               
               
               Conread position:282-820
               
               
               Cow position:chr9:25903574-25904143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:575
               
               
               Alignm identity:403
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 40

               
               
               Conread position:283-818
               
               
               Cow position:chr9:35595009-35594464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:561
               
               
               Alignm identity:400
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 169

               
               
               Conread position:283-820
               
               
               Cow position:chr9:1075119-1074554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:567
               
               
               Alignm identity:392
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 370

               
               
               Conread position:295-656
               
               
               Cow position:chr9:30191296-30190930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:262
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):35, 141

               
               
               Conread position:297-735
               
               
               Cow position:chr9:2866881-2866442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:302
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):84, 34

               
               
               Conread position:297-809
               
               
               Cow position:chr9:17901475-17900966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 182

               
               
               Conread position:297-828
               
               
               Cow position:chr9:20176627-20176083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:563
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 159

               
               
               Conread position:299-820
               
               
               Cow position:chr9:2679360-2679894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:547
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 16

               
               
               Conread position:323-820
               
               
               Cow position:chr9:26567719-26568217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 113

               
               
               Conread position:324-820
               
               
               Cow position:chr9:2172066-2172567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 126

               
               
               Conread position:324-820
               
               
               Cow position:chr9:9562924-9562432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 63

               
               
               Conread position:324-820
               
               
               Cow position:chr9:22436087-22436572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 75

               
               
               Conread position:325-676
               
               
               Cow position:chr9:7105312-7104951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 108

               
               
               Conread position:326-820
               
               
               Cow position:chr9:8402502-8402976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 38

               
               
               Conread position:329-561
               
               
               Cow position:chr9:22089633-22089856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):22, 109

               
               
               Conread position:331-820
               
               
               Cow position:chr9:60462785-60462318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:321
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):61, 81

               
               
               Conread position:336-821
               
               
               Cow position:chr9:25923826-25923371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:330
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):52, 23

               
               
               Conread position:340-724
               
               
               Cow position:chr9:1637997-1638380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:267
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):191, 45

               
               
               Conread position:345-541
               
               
               Cow position:chr9:32296112-32295928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:346-701
               
               
               Cow position:chr9:62736646-62736305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):213, 36

               
               
               Conread position:359-743
               
               
               Cow position:chr9:22192432-22192819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:267
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):33, 8

               
               
               Conread position:360-676
               
               
               Cow position:chr9:26553736-26554034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:223
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):220, 35

               
               
               Conread position:360-818
               
               
               Cow position:chr9:3224480-3224018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 63

               
               
               Conread position:360-818
               
               
               Cow position:chr9:7003884-7004353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:360-820
               
               
               Cow position:chr9:2210914-2211383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:315
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):24, 7

               
               
               Conread position:363-820
               
               
               Cow position:chr9:27036072-27036522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):194, 77

               
               
               Conread position:367-757
               
               
               Cow position:chr9:9313950-9313585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:271
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):309, 61

               
               
               Conread position:373-820
               
               
               Cow position:chr9:50094073-50093615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 106

               
               
               Conread position:374-805
               
               
               Cow position:chr9:52292589-52292997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:294
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):306, 11

               
               
               Conread position:374-820
               
               
               Cow position:chr9:4717350-4717790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 47

               
               
               Conread position:374-820
               
               
               Cow position:chr9:13119127-13118686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:297
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):37, 14

               
               
               Conread position:374-821
               
               
               Cow position:chr9:9647327-9647764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:312
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):190, 43

               
               
               Conread position:375-820
               
               
               Cow position:chr9:49515307-49514863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:304
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):29, 40

               
               
               Conread position:376-821
               
               
               Cow position:chr9:45874696-45875137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 76

               
               
               Conread position:378-781
               
               
               Cow position:chr9:12912952-12913360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 74

               
               
               Conread position:379-743
               
               
               Cow position:chr9:46272297-46272670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:250
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):9, 28

               
               
               Conread position:380-767
               
               
               Cow position:chr9:46460874-46460500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:261
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):60, 15

               
               
               Conread position:382-547
               
               
               Cow position:chr9:3544059-3544220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:385-645
               
               
               Cow position:chr9:56585626-56585371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):83, 125

               
               
               Conread position:389-802
               
               
               Cow position:chr9:17069717-17069324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:282
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):187, 45

               
               
               Conread position:395-828
               
               
               Cow position:chr9:867445-867018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:294
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):19, 76

               
               
               Conread position:404-729
               
               
               Cow position:chr9:5211745-5212058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):135, 48

               
               
               Conread position:405-819
               
               
               Cow position:chr9:64015472-64015051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 72

               
               
               Conread position:405-820
               
               
               Cow position:chr9:8781708-8781306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):208, 20

               
               
               Conread position:410-794
               
               
               Cow position:chr9:47514948-47515311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:258
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):266, 65

               
               
               Conread position:411-781
               
               
               Cow position:chr9:47545407-47545776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:261
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):143, 45

               
               
               Conread position:435-820
               
               
               Cow position:chr9:29332478-29332881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 54

               
               
               Conread position:439-749
               
               
               Cow position:chr9:60840437-60840733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):143, 10

               
               
               Conread position:440-820
               
               
               Cow position:chr9:9707365-9707740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:262
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):121, 16

               
               
               Conread position:444-723
               
               
               Cow position:chr9:9211802-9211520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):84, 23

               
               
               Conread position:456-820
               
               
               Cow position:chr9:26737165-26737543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:273
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):94, 9

               
               
               Conread position:457-820
               
               
               Cow position:chr9:26102009-26101647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:258
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):102, 12

               
               
               Conread position:459-828
               
               
               Cow position:chr9:12183166-12182792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:250
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):98, 10

               
               
               Conread position:510-820
               
               
               Cow position:chr9:4308060-4307743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 125

               
               
               Conread position:524-818
               
               
               Cow position:chr9:64026756-64027052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):20, 104

               
               
               Conread position:545-812
               
               
               Cow position:chr9:52035173-52035444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):14, 52

               
               
               Conread position:564-820
               
               
               Cow position:chr9:10976481-10976737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 61

               
               
               Conread position:565-818
               
               
               Cow position:chr9:29789321-29789068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:178
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):113, 60

               
               
               Conread position:565-828
               
               
               Cow position:chr9:28000888-28001154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):74, 26

               
               
               Conread position:606-820
               
               
               Cow position:chr9:30190910-30190690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):72, 26

               
               
               Conread position:619-820
               
               
               Cow position:chr9:56303031-56302830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):59, 6

               
               
               Conread position:624-820
               
               
               Cow position:chr9:59509736-59509539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:154
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:625-820
               
               
               Cow position:chr9:3168608-3168806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:632-818
               
               
               Cow position:chr9:32294922-32294737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):46, 120

               
               
               Conread position:632-819
               
               
               Cow position:chr9:6709391-6709579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:635-818
               
               
               Cow position:chr9:27097562-27097744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):128, 138

               
               
               Conread position:635-820
               
               
               Cow position:chr9:29044328-29044141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:636-820
               
               
               Cow position:chr9:29026486-29026303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):42, 94

               
               
               Conread position:637-822
               
               
               Cow position:chr9:7091016-7090834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):126, 25

               
               
               Conread position:640-820
               
               
               Cow position:chr9:43665107-43665289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:642-828
               
               
               Cow position:chr9:17312822-17313007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):36, 133

               
               
               Conread position:645-828
               
               
               Cow position:chr9:2000703-2000520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):33, 149

               
               
               Conread position:676-820
               
               
               Cow position:chr9:37066334-37066482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):93, 22

               
               
               Conread position:699-828
               
               
               Cow position:chr9:29333083-29333211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:98
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:224-820
               
               
               Cow position:chrX:9009257-9009865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 21

               
               
               Conread position:225-435
               
               
               Cow position:chrX:23132887-23133104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):75, 20

               
               
               Conread position:225-520
               
               
               Cow position:chrX:7094321-7094622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:217
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):75, 20

               
               
               Conread position:225-542
               
               
               Cow position:chrX:5864313-5864636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:236
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):73, 26

               
               
               Conread position:225-569
               
               
               Cow position:chrX:8480570-8480925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-630
               
               
               Cow position:chrX:16463396-16462980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-643
               
               
               Cow position:chrX:5335566-5335129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-643
               
               
               Cow position:chrX:12354154-12354588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-658
               
               
               Cow position:chrX:8962654-8962207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 20

               
               
               Conread position:225-808
               
               
               Cow position:chrX:7752819-7753421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-815
               
               
               Cow position:chrX:13397300-13396695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-817
               
               
               Cow position:chrX:14460443-14461034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:421
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 20

               
               
               Conread position:225-820
               
               
               Cow position:chrX:674283-673678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:438
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chrX:2561940-2561327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:624
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chrX:2577345-2577951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chrX:2815562-2814954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chrX:2858456-2857848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chrX:3374989-3374380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chrX:3420292-3419686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 17

               
               
               Conread position:225-820
               
               
               Cow position:chrX:3467727-3467118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 20

               
               
               Conread position:225-820
               
               
               Cow position:chrX:8589081-8589708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:636
               
               
               Alignm identity:440
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chrX:11422790-11423400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:431
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chrX:12653604-12652976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:443
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chrX:12702784-12702173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chrX:14784545-14783947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chrX:15178517-15177907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 20

               
               
               Conread position:225-820
               
               
               Cow position:chrX:15623581-15622975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chrX:15980039-15979430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:440
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chrX:16362203-16361591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chrX:17477505-17476891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:625
               
               
               Alignm identity:444
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chrX:18220342-18220950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chrX:18658872-18658279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:431
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 21

               
               
               Conread position:225-820
               
               
               Cow position:chrX:21341311-21341932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 20

               
               
               Conread position:225-820
               
               
               Cow position:chrX:24324654-24324036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:627
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 20

               
               
               Conread position:225-820
               
               
               Cow position:chrX:28560973-28560361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:625
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 20

               
               
               Conread position:225-820
               
               
               Cow position:chrX:28585899-28586510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chrX:29935516-29936127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 20

               
               
               Conread position:225-820
               
               
               Cow position:chrX:30011918-30012528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-820
               
               
               Cow position:chrX:35530772-35531384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-821
               
               
               Cow position:chrX:17052462-17053081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:627
               
               
               Alignm identity:440
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:225-831
               
               
               Cow position:chrX:39563014-39562412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:626
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 20

               
               
               Conread position:227-558
               
               
               Cow position:chrX:8610780-8610447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):70, 18

               
               
               Conread position:227-748
               
               
               Cow position:chrX:46235664-46236199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:544
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 18

               
               
               Conread position:227-756
               
               
               Cow position:chrX:15486847-15486332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:542
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 18

               
               
               Conread position:227-820
               
               
               Cow position:chrX:12480915-12481525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 18

               
               
               Conread position:228-599
               
               
               Cow position:chrX:12287482-12287095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:274
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):70, 94

               
               
               Conread position:228-748
               
               
               Cow position:chrX:23040200-23039668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:542
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 19

               
               
               Conread position:228-767
               
               
               Cow position:chrX:30138653-30138101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:566
               
               
               Alignm identity:386
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 13

               
               
               Conread position:228-781
               
               
               Cow position:chrX:19875440-19875995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:569
               
               
               Alignm identity:400
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 20

               
               
               Conread position:228-820
               
               
               Cow position:chrX:5282859-5282256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 143

               
               
               Conread position:228-820
               
               
               Cow position:chrX:16276568-16277178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 95

               
               
               Conread position:228-820
               
               
               Cow position:chrX:16811522-16810918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 17

               
               
               Conread position:228-820
               
               
               Cow position:chrX:28521674-28521076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:608
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 232

               
               
               Conread position:229-731
               
               
               Cow position:chrX:20695894-20695390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 30

               
               
               Conread position:229-820
               
               
               Cow position:chrX:27425402-27424793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 16

               
               
               Conread position:229-820
               
               
               Cow position:chrX:27619210-27618607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 16

               
               
               Conread position:229-821
               
               
               Cow position:chrX:31053764-31053186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:601
               
               
               Alignm identity:380
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):75, 22

               
               
               Conread position:230-788
               
               
               Cow position:chrX:12314827-12314268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:580
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 15

               
               
               Conread position:230-820
               
               
               Cow position:chrX:12668826-12668218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 15

               
               
               Conread position:230-820
               
               
               Cow position:chrX:28650629-28650037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 15

               
               
               Conread position:231-505
               
               
               Cow position:chrX:13053950-13054217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):69, 14

               
               
               Conread position:231-781
               
               
               Cow position:chrX:24476262-24475716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:567
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 206

               
               
               Conread position:231-798
               
               
               Cow position:chrX:41888070-41887493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:440
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 15

               
               
               Conread position:231-820
               
               
               Cow position:chrX:15126300-15125701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 14

               
               
               Conread position:231-820
               
               
               Cow position:chrX:26399202-26398597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 253

               
               
               Conread position:231-820
               
               
               Cow position:chrX:27593060-27592461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 16

               
               
               Conread position:231-820
               
               
               Cow position:chrX:31199488-31200085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 14

               
               
               Conread position:232-450
               
               
               Cow position:chrX:22618383-22618155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-616
               
               
               Cow position:chrX:1834744-1835138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:282
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-686
               
               
               Cow position:chrX:44388689-44389155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:322
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):65, 13

               
               
               Conread position:232-799
               
               
               Cow position:chrX:5296617-5296050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:584
               
               
               Alignm identity:396
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 15

               
               
               Conread position:232-813
               
               
               Cow position:chrX:28868319-28867720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:451
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chrX:971709-972307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chrX:1547905-1548509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:431
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chrX:2481705-2481104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chrX:11148409-11147804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 13

               
               
               Conread position:232-820
               
               
               Cow position:chrX:12343862-12344470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 13

               
               
               Conread position:232-820
               
               
               Cow position:chrX:13412207-13411601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chrX:14595774-14596376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 13

               
               
               Conread position:232-820
               
               
               Cow position:chrX:18952755-18952148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 13

               
               
               Conread position:232-820
               
               
               Cow position:chrX:21830456-21831043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chrX:22489070-22489685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chrX:23389589-23389007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 13

               
               
               Conread position:232-820
               
               
               Cow position:chrX:23455091-23454490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chrX:26528901-26529493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:604
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chrX:27083893-27084502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:443
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chrX:27316202-27316807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:419
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chrX:29949672-29949082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:415
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chrX:30068920-30068313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:624
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 13

               
               
               Conread position:232-820
               
               
               Cow position:chrX:30183010-30182399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:232-820
               
               
               Cow position:chrX:30231168-30230577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 13

               
               
               Conread position:232-820
               
               
               Cow position:chrX:32066241-32065639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:431
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 13

               
               
               Conread position:232-820
               
               
               Cow position:chrX:37813078-37813675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 13

               
               
               Conread position:233-503
               
               
               Cow position:chrX:9093500-9093779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:194
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):67, 249

               
               
               Conread position:233-635
               
               
               Cow position:chrX:45377174-45376749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:280
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):63, 259

               
               
               Conread position:233-654
               
               
               Cow position:chrX:30057976-30058410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:302
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):60, 232

               
               
               Conread position:233-658
               
               
               Cow position:chrX:29286360-29286796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 175

               
               
               Conread position:233-818
               
               
               Cow position:chrX:29910502-29909898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 12

               
               
               Conread position:233-820
               
               
               Cow position:chrX:321392-321994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 96

               
               
               Conread position:233-820
               
               
               Cow position:chrX:15600088-15600674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:604
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 12

               
               
               Conread position:233-820
               
               
               Cow position:chrX:38148522-38149120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 253

               
               
               Conread position:235-658
               
               
               Cow position:chrX:26426653-26426226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 10

               
               
               Conread position:235-818
               
               
               Cow position:chrX:30365854-30365276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:602
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 12

               
               
               Conread position:236-781
               
               
               Cow position:chrX:41102537-41101984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:562
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 89

               
               
               Conread position:237-818
               
               
               Cow position:chrX:5651705-5651148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:593
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 8

               
               
               Conread position:238-749
               
               
               Cow position:chrX:18242095-18242598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 7

               
               
               Conread position:240-495
               
               
               Cow position:chrX:10416520-10416256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:196
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):13, 86

               
               
               Conread position:241-483
               
               
               Cow position:chrX:29778577-29778327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):56, 220

               
               
               Conread position:241-820
               
               
               Cow position:chrX:4752693-4752092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:442
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 214

               
               
               Conread position:241-820
               
               
               Cow position:chrX:29172828-29172238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:598
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 81

               
               
               Conread position:242-514
               
               
               Cow position:chrX:8574555-8574285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:201
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):67, 217

               
               
               Conread position:242-550
               
               
               Cow position:chrX:7482567-7482882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:228
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):56, 245

               
               
               Conread position:242-689
               
               
               Cow position:chrX:27390265-27389803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:311
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):58, 78

               
               
               Conread position:242-819
               
               
               Cow position:chrX:24195476-24194897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:601
               
               
               Alignm identity:377
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):30, 17

               
               
               Conread position:242-819
               
               
               Cow position:chrX:37015058-37015644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:601
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 80

               
               
               Conread position:242-820
               
               
               Cow position:chrX:3084202-3083609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:602
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 80

               
               
               Conread position:242-820
               
               
               Cow position:chrX:13075761-13075174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 80

               
               
               Conread position:242-820
               
               
               Cow position:chrX:13096324-13095735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:601
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 80

               
               
               Conread position:242-820
               
               
               Cow position:chrX:18451914-18452510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:602
               
               
               Alignm identity:438
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 244

               
               
               Conread position:242-820
               
               
               Cow position:chrX:30201796-30201208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:598
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 159

               
               
               Conread position:242-821
               
               
               Cow position:chrX:20798256-20798833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:595
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 83

               
               
               Conread position:242-828
               
               
               Cow position:chrX:36136617-36136037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:601
               
               
               Alignm identity:403
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):317, 32

               
               
               Conread position:244-589
               
               
               Cow position:chrX:13182189-13181855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 80

               
               
               Conread position:245-755
               
               
               Cow position:chrX:21589931-21590444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:526
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 75

               
               
               Conread position:245-818
               
               
               Cow position:chrX:27986884-27986303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:593
               
               
               Alignm identity:402
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 125

               
               
               Conread position:245-820
               
               
               Cow position:chrX:6872132-6871547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:598
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 77

               
               
               Conread position:245-820
               
               
               Cow position:chrX:7031401-7031982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:601
               
               
               Alignm identity:419
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 77

               
               
               Conread position:245-820
               
               
               Cow position:chrX:16780230-16780811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:403
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 43

               
               
               Conread position:245-820
               
               
               Cow position:chrX:21643967-21643384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:596
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 77

               
               
               Conread position:245-820
               
               
               Cow position:chrX:24134321-24133764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:590
               
               
               Alignm identity:393
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 194

               
               
               Conread position:245-820
               
               
               Cow position:chrX:26757676-26757099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 193

               
               
               Conread position:245-821
               
               
               Cow position:chrX:5322789-5322198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:602
               
               
               Alignm identity:419
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 75

               
               
               Conread position:245-821
               
               
               Cow position:chrX:23277965-23278553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 14

               
               
               Conread position:245-828
               
               
               Cow position:chrX:29885928-29886525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:606
               
               
               Alignm identity:403
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 241

               
               
               Conread position:247-597
               
               
               Cow position:chrX:26578612-26578967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:241
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):52, 184

               
               
               Conread position:248-679
               
               
               Cow position:chrX:47396589-47396157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 5

               
               
               Conread position:248-731
               
               
               Cow position:chrX:15308992-15308500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:332
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):64, 14

               
               
               Conread position:248-771
               
               
               Cow position:chrX:34219253-34219773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:539
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 74

               
               
               Conread position:248-820
               
               
               Cow position:chrX:17666843-17666269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:590
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 74

               
               
               Conread position:248-820
               
               
               Cow position:chrX:27961800-27962359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:584
               
               
               Alignm identity:388
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 70

               
               
               Conread position:248-820
               
               
               Cow position:chrX:28626686-28626115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:586
               
               
               Alignm identity:392
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 227

               
               
               Conread position:253-818
               
               
               Cow position:chrX:6014004-6013446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:582
               
               
               Alignm identity:404
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 127

               
               
               Conread position:256-788
               
               
               Cow position:chrX:29097145-29097693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:555
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 66

               
               
               Conread position:256-828
               
               
               Cow position:chrX:30170883-30170315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:589
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 24

               
               
               Conread position:259-819
               
               
               Cow position:chrX:35386242-35385690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:576
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 27

               
               
               Conread position:259-827
               
               
               Cow position:chrX:2535117-2534547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:580
               
               
               Alignm identity:397
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 224

               
               
               Conread position:261-797
               
               
               Cow position:chrX:29793077-29792528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:560
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 199

               
               
               Conread position:261-820
               
               
               Cow position:chrX:5356869-5356295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:581
               
               
               Alignm identity:403
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 215

               
               
               Conread position:262-567
               
               
               Cow position:chrX:18553385-18553690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):36, 148

               
               
               Conread position:262-820
               
               
               Cow position:chrX:26766245-26765669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:583
               
               
               Alignm identity:403
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 223

               
               
               Conread position:263-731
               
               
               Cow position:chrX:35940305-35939845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 28

               
               
               Conread position:263-820
               
               
               Cow position:chrX:17609366-17608800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:581
               
               
               Alignm identity:375
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):37, 59

               
               
               Conread position:268-820
               
               
               Cow position:chrX:24771902-24771333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:576
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 54

               
               
               Conread position:270-692
               
               
               Cow position:chrX:21059742-21060167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:306
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):25, 150

               
               
               Conread position:283-685
               
               
               Cow position:chrX:23072152-23072554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:267
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):47, 127

               
               
               Conread position:294-820
               
               
               Cow position:chrX:15041541-15041015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:547
               
               
               Alignm identity:360
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):33, 23

               
               
               Conread position:297-528
               
               
               Cow position:chrX:35026041-35026272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):33, 176

               
               
               Conread position:297-818
               
               
               Cow position:chrX:41850205-41849697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:531
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):260, 20

               
               
               Conread position:297-820
               
               
               Cow position:chrX:21269043-21268533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:536
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 72

               
               
               Conread position:298-819
               
               
               Cow position:chrX:16684841-16684308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:539
               
               
               Alignm identity:388
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 183

               
               
               Conread position:298-820
               
               
               Cow position:chrX:13447831-13447297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:541
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 177

               
               
               Conread position:298-820
               
               
               Cow position:chrX:20035406-20034872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:541
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 183

               
               
               Conread position:299-749
               
               
               Cow position:chrX:10385300-10385757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:304
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):91, 46

               
               
               Conread position:324-617
               
               
               Cow position:chrX:12294830-12295129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):50, 42

               
               
               Conread position:324-626
               
               
               Cow position:chrX:5308721-5308422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):79, 21

               
               
               Conread position:324-749
               
               
               Cow position:chrX:23213003-23212582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 34

               
               
               Conread position:324-799
               
               
               Cow position:chrX:4330261-4329788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:321
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):111, 26

               
               
               Conread position:324-817
               
               
               Cow position:chrX:16405648-16406126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:321
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):17, 31

               
               
               Conread position:325-561
               
               
               Cow position:chrX:22128703-22128482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:325-600
               
               
               Cow position:chrX:7541220-7541493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):16, 153

               
               
               Conread position:326-731
               
               
               Cow position:chrX:30062054-30061659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:269
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):21, 142

               
               
               Conread position:326-799
               
               
               Cow position:chrX:32330419-32330888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:308
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):39, 19

               
               
               Conread position:339-819
               
               
               Cow position:chrX:28506231-28505741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 73

               
               
               Conread position:340-761
               
               
               Cow position:chrX:13081972-13081560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 117

               
               
               Conread position:340-820
               
               
               Cow position:chrX:28757606-28757115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 139

               
               
               Conread position:345-653
               
               
               Cow position:chrX:15144862-15144542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:232
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):48, 125

               
               
               Conread position:345-818
               
               
               Cow position:chrX:32123106-32123585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 78

               
               
               Conread position:352-723
               
               
               Cow position:chrX:25464976-25465345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:256
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):32, 104

               
               
               Conread position:359-740
               
               
               Cow position:chrX:20927241-20927632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:262
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:360-587
               
               
               Cow position:chrX:24112456-24112229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):16, 123

               
               
               Conread position:360-809
               
               
               Cow position:chrX:2892777-2892337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 7

               
               
               Conread position:360-820
               
               
               Cow position:chrX:21753368-21752913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 38

               
               
               Conread position:360-820
               
               
               Cow position:chrX:36237389-36237861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:311
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):15, 7

               
               
               Conread position:361-623
               
               
               Cow position:chrX:22816897-22817171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):31, 121

               
               
               Conread position:362-821
               
               
               Cow position:chrX:39694708-39695170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 117

               
               
               Conread position:363-805
               
               
               Cow position:chrX:26773227-26772807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:296
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):64, 12

               
               
               Conread position:363-828
               
               
               Cow position:chrX:12184009-12184477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 114

               
               
               Conread position:365-819
               
               
               Cow position:chrX:29026026-29026491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:307
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):196, 102

               
               
               Conread position:365-820
               
               
               Cow position:chrX:21580551-21581014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 111

               
               
               Conread position:365-820
               
               
               Cow position:chrX:27495778-27496242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 107

               
               
               Conread position:365-828
               
               
               Cow position:chrX:21491234-21491697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):194, 89

               
               
               Conread position:367-671
               
               
               Cow position:chrX:3626532-3626819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:203
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):200, 18

               
               
               Conread position:367-814
               
               
               Cow position:chrX:8938694-8938234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:293
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):25, 112

               
               
               Conread position:370-672
               
               
               Cow position:chrX:38236498-38236196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):17, 89

               
               
               Conread position:371-820
               
               
               Cow position:chrX:12667176-12667645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 11

               
               
               Conread position:373-820
               
               
               Cow position:chrX:505115-504682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 47

               
               
               Conread position:373-820
               
               
               Cow position:chrX:22567183-22566727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 108

               
               
               Conread position:374-585
               
               
               Cow position:chrX:3621383-3621595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):20, 96

               
               
               Conread position:374-820
               
               
               Cow position:chrX:19725918-19725471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:305
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):8, 72

               
               
               Conread position:376-746
               
               
               Cow position:chrX:25613136-25613502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:254
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):81, 94

               
               
               Conread position:376-820
               
               
               Cow position:chrX:38691913-38692342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:299
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):196, 32

               
               
               Conread position:378-630
               
               
               Cow position:chrX:20018958-20019220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):14, 101

               
               
               Conread position:378-637
               
               
               Cow position:chrX:12284022-12284280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):183, 25

               
               
               Conread position:378-820
               
               
               Cow position:chrX:23020379-23020824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 92

               
               
               Conread position:384-818
               
               
               Cow position:chrX:33715611-33715174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:293
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):34, 57

               
               
               Conread position:386-754
               
               
               Cow position:chrX:17525627-17525265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:253
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):179, 66

               
               
               Conread position:389-643
               
               
               Cow position:chrX:23318816-23318573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):148, 31

               
               
               Conread position:389-820
               
               
               Cow position:chrX:13054926-13055349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 65

               
               
               Conread position:390-781
               
               
               Cow position:chrX:31510719-31511105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):163, 50

               
               
               Conread position:395-820
               
               
               Cow position:chrX:16700797-16701220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 60

               
               
               Conread position:404-820
               
               
               Cow position:chrX:25071373-25070966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:280
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):139, 64

               
               
               Conread position:404-820
               
               
               Cow position:chrX:30070778-30071201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 52

               
               
               Conread position:413-820
               
               
               Cow position:chrX:24168930-24168526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:276
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):146, 56

               
               
               Conread position:416-818
               
               
               Cow position:chrX:2144084-2144496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 68

               
               
               Conread position:419-820
               
               
               Cow position:chrX:20333440-20333031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 56

               
               
               Conread position:421-828
               
               
               Cow position:chrX:6281657-6281246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):141, 31

               
               
               Conread position:426-820
               
               
               Cow position:chrX:22618072-22617676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:278
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):131, 49

               
               
               Conread position:434-782
               
               
               Cow position:chrX:30130606-30130261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):14, 91

               
               
               Conread position:435-805
               
               
               Cow position:chrX:23328671-23328290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:247
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):122, 191

               
               
               Conread position:435-820
               
               
               Cow position:chrX:5393710-5393318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 40

               
               
               Conread position:439-820
               
               
               Cow position:chrX:32327300-32327687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:270
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):43, 197

               
               
               Conread position:448-820
               
               
               Cow position:chrX:37957905-37957526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 27

               
               
               Conread position:448-828
               
               
               Cow position:chrX:16861025-16860644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:262
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):111, 15

               
               
               Conread position:452-820
               
               
               Cow position:chrX:3580186-3580562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:259
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):121, 17

               
               
               Conread position:456-820
               
               
               Cow position:chrX:37850284-37850660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 181

               
               
               Conread position:457-820
               
               
               Cow position:chrX:33584533-33584912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:253
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):97, 12

               
               
               Conread position:460-829
               
               
               Cow position:chrX:16848718-16848353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:256
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):27, 17

               
               
               Conread position:471-820
               
               
               Cow position:chrX:11463876-11463518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 18

               
               
               Conread position:480-804
               
               
               Cow position:chrX:34448706-34449030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):70, 120

               
               
               Conread position:489-820
               
               
               Cow position:chrX:21224661-21225000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 145

               
               
               Conread position:495-820
               
               
               Cow position:chrX:9093836-9094172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:235
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):64, 141

               
               
               Conread position:496-820
               
               
               Cow position:chrX:30436038-30436373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 140

               
               
               Conread position:497-801
               
               
               Cow position:chrX:6249374-6249034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:250
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:501-799
               
               
               Cow position:chrX:2977896-2977584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 138

               
               
               Conread position:507-794
               
               
               Cow position:chrX:18768278-18768556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:191
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:507-819
               
               
               Cow position:chrX:21316663-21316978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):16, 66

               
               
               Conread position:513-820
               
               
               Cow position:chrX:28664608-28664924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 28

               
               
               Conread position:518-820
               
               
               Cow position:chrX:45419023-45418719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):39, 82

               
               
               Conread position:519-821
               
               
               Cow position:chrX:1784794-1785092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):53, 21

               
               
               Conread position:547-819
               
               
               Cow position:chrX:23525102-23524833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):61, 22

               
               
               Conread position:547-820
               
               
               Cow position:chrX:7094725-7094997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:191
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):131, 29

               
               
               Conread position:547-820
               
               
               Cow position:chrX:29096069-29095797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 17

               
               
               Conread position:556-820
               
               
               Cow position:chrX:12836052-12835787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:191
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):122, 16

               
               
               Conread position:564-719
               
               
               Cow position:chrX:4743763-4743609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:565-748
               
               
               Cow position:chrX:36837976-36838159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):111, 59

               
               
               Conread position:565-781
               
               
               Cow position:chrX:10414867-10414655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):46, 60

               
               
               Conread position:565-820
               
               
               Cow position:chrX:22127865-22127608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):43, 20

               
               
               Conread position:565-820
               
               
               Cow position:chrX:43791882-43791630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):109, 46

               
               
               Conread position:565-828
               
               
               Cow position:chrX:42477541-42477279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:187
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):113, 60

               
               
               Conread position:576-820
               
               
               Cow position:chrX:24111485-24111233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:180
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):7, 51

               
               
               Conread position:586-820
               
               
               Cow position:chrX:5367855-5367625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):92, 39

               
               
               Conread position:593-820
               
               
               Cow position:chrX:27979516-27979289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):85, 32

               
               
               Conread position:598-817
               
               
               Cow position:chrX:35026283-35026498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):80, 27

               
               
               Conread position:598-820
               
               
               Cow position:chrX:3622393-3622613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):78, 27

               
               
               Conread position:606-820
               
               
               Cow position:chrX:528959-529172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):72, 16

               
               
               Conread position:606-821
               
               
               Cow position:chrX:13181250-13181015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:183
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:607-820
               
               
               Cow position:chrX:1942049-1941837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):71, 6

               
               
               Conread position:608-820
               
               
               Cow position:chrX:21791931-21792143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):70, 17

               
               
               Conread position:612-800
               
               
               Cow position:chrX:16463626-16463812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):66, 13

               
               
               Conread position:612-820
               
               
               Cow position:chrX:22817384-22817586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):66, 13

               
               
               Conread position:624-820
               
               
               Cow position:chrX:11459507-11459310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:625-820
               
               
               Cow position:chrX:12354856-12355051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):53, 159

               
               
               Conread position:625-828
               
               
               Cow position:chrX:29940565-29940772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):51, 140

               
               
               Conread position:631-820
               
               
               Cow position:chrX:4412196-4412384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):47, 103

               
               
               Conread position:633-815
               
               
               Cow position:chrX:17612430-17612245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:634-820
               
               
               Cow position:chrX:45376651-45376458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:638-821
               
               
               Cow position:chrX:36072396-36072212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:641-820
               
               
               Cow position:chrX:10530440-10530261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):37, 94

               
               
               Conread position:647-822
               
               
               Cow position:chrX:2380864-2381040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:670-828
               
               
               Cow position:chrX:33535948-33536106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):25, 31