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Cow genome map

           
Conread name:
           
Ss1.1-Pig4-TMW8056I09.5
        

               
Conread position:
               
376-622
               

               
Cow position:
               
chr11:50368523-50368277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
66, 52
               

               
Conread position:
               
452-706
               

               
Cow position:
               
chr11:50368531-50368277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
58, 50
               

               
Conread position:
               
536-847
               

               
Cow position:
               
chr11:50368531-50368225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
50, 58
               

               
Conread position:
               
691-1005
               

               
Cow position:
               
chr11:50368544-50368234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
162, 156
               

               
Conread position:
               
766-1007
               

               
Cow position:
               
chr11:50368553-50368312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
15, 23
               

               
Conread position:
               
381-842
               

               
Cow position:
               
chr13:24163163-24163623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
35, 7
               

               
Conread position:
               
383-1007
               

               
Cow position:
               
chr13:22124850-22125474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
629
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
226, 213
               

               
Conread position:
               
383-1007
               

               
Cow position:
               
chr13:24162576-24163200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
629
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
225, 205
               

               
Conread position:
               
387-769
               

               
Cow position:
               
chr13:24163084-24163466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
186, 193
               

               
Conread position:
               
387-1007
               

               
Cow position:
               
chr13:22125022-22125642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
625
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
30, 39
               

               
Conread position:
               
387-1007
               

               
Cow position:
               
chr13:24162748-24163368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
625
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
30, 39
               

               
Conread position:
               
388-1006
               

               
Cow position:
               
chr13:24162833-24163451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
622
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
36, 30
               

               
Conread position:
               
391-1007
               

               
Cow position:
               
chr13:24162668-24163284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
622
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 35
               

               
Conread position:
               
404-1006
               

               
Cow position:
               
chr13:22125124-22125725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
607
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
204, 17
               

               
Conread position:
               
431-1008
               

               
Cow position:
               
chr13:24162540-24163117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
582
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 149
               

               
Conread position:
               
439-911
               

               
Cow position:
               
chr13:22125326-22125798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
155, 149
               

               
Conread position:
               
439-1007
               

               
Cow position:
               
chr13:24163052-24163620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
570
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
155, 149
               

               
Conread position:
               
449-1007
               

               
Cow position:
               
chr13:22125000-22125558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
564
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
80, 85
               

               
Conread position:
               
452-1007
               

               
Cow position:
               
chr13:22124751-22125306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
561
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
142, 132
               

               
Conread position:
               
452-1008
               

               
Cow position:
               
chr13:22124835-22125391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
558
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 128
               

               
Conread position:
               
686-1007
               

               
Cow position:
               
chr13:24162458-24162780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
344-1003
               

               
Cow position:
               
chr14:3061354-3060693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
665
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 87
               

               
Conread position:
               
350-993
               

               
Cow position:
               
chr14:680449-681093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
649
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
28, 244
               

               
Conread position:
               
356-924
               

               
Cow position:
               
chr14:433790-434359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
575
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 10
               

               
Conread position:
               
357-875
               

               
Cow position:
               
chr14:3061172-3060653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 336
               

               
Conread position:
               
376-885
               

               
Cow position:
               
chr14:680728-681237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
376-888
               

               
Cow position:
               
chr14:680560-681072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
209, 217
               

               
Conread position:
               
376-1003
               

               
Cow position:
               
chr14:3061656-3061029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
632
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 124
               

               
Conread position:
               
376-1005
               

               
Cow position:
               
chr14:3061740-3061111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
635
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
276, 272
               

               
Conread position:
               
379-1007
               

               
Cow position:
               
chr14:3061401-3060773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
634
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
203, 198
               

               
Conread position:
               
383-657
               

               
Cow position:
               
chr14:663395-663121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
45, 49
               

               
Conread position:
               
383-715
               

               
Cow position:
               
chr14:3079998-3079666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
202, 210
               

               
Conread position:
               
383-799
               

               
Cow position:
               
chr14:3155417-3155833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
105, 121
               

               
Conread position:
               
383-993
               

               
Cow position:
               
chr14:3080334-3079724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
614
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
203, 211
               

               
Conread position:
               
383-994
               

               
Cow position:
               
chr14:3061481-3060870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
614
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 49
               

               
Conread position:
               
387-886
               

               
Cow position:
               
chr14:433906-434405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 30
               

               
Conread position:
               
387-888
               

               
Cow position:
               
chr14:680655-681156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
383, 399
               

               
Conread position:
               
387-904
               

               
Cow position:
               
chr14:3080162-3079642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
199, 207
               

               
Conread position:
               
387-924
               

               
Cow position:
               
chr14:3061225-3060688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 200
               

               
Conread position:
               
387-993
               

               
Cow position:
               
chr14:3080666-3080060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
609
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
378, 398
               

               
Conread position:
               
387-993
               

               
Cow position:
               
chr14:3080750-3080144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
607
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
387-1007
               

               
Cow position:
               
chr14:433739-434358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
623
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 25
               

               
Conread position:
               
387-1008
               

               
Cow position:
               
chr14:447601-448222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
625
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
198, 210
               

               
Conread position:
               
388-994
               

               
Cow position:
               
chr14:3080581-3079975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
609
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 40
               

               
Conread position:
               
391-719
               

               
Cow position:
               
chr14:3155509-3155837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
136, 146
               

               
Conread position:
               
391-967
               

               
Cow position:
               
chr14:3080242-3079666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
578
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
119, 109
               

               
Conread position:
               
391-1007
               

               
Cow position:
               
chr14:3080410-3079794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
618
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
195, 215
               

               
Conread position:
               
391-1007
               

               
Cow position:
               
chr14:3080830-3080214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
621
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
25, 33
               

               
Conread position:
               
398-993
               

               
Cow position:
               
chr14:3128083-3127488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
428, 435
               

               
Conread position:
               
398-1007
               

               
Cow position:
               
chr14:3080487-3079878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
611
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 288
               

               
Conread position:
               
401-1007
               

               
Cow position:
               
chr14:25894972-25895578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
608
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 196
               

               
Conread position:
               
404-1003
               

               
Cow position:
               
chr14:3061796-3061197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
603
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 40
               

               
Conread position:
               
410-635
               

               
Cow position:
               
chr14:3155612-3155837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
431-888
               

               
Cow position:
               
chr14:3128134-3127677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
155, 166
               

               
Conread position:
               
432-1003
               

               
Cow position:
               
chr14:447562-448133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
574
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 165
               

               
Conread position:
               
437-873
               

               
Cow position:
               
chr14:447819-448255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
75, 86
               

               
Conread position:
               
448-741
               

               
Cow position:
               
chr14:663414-663121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
50, 46
               

               
Conread position:
               
449-835
               

               
Cow position:
               
chr14:663496-663111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
142, 26
               

               
Conread position:
               
451-1007
               

               
Cow position:
               
chr14:3080938-3080382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
560
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
57, 51
               

               
Conread position:
               
452-706
               

               
Cow position:
               
chr14:3127525-3127271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
64, 43
               

               
Conread position:
               
452-936
               

               
Cow position:
               
chr14:447750-448234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 67
               

               
Conread position:
               
452-993
               

               
Cow position:
               
chr14:680468-681009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 141
               

               
Conread position:
               
452-1005
               

               
Cow position:
               
chr14:3127861-3127308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
556
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
391, 379
               

               
Conread position:
               
463-1007
               

               
Cow position:
               
chr14:447509-448053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
548
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
122, 130
               

               
Conread position:
               
481-1003
               

               
Cow position:
               
chr14:680245-680767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
525
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
63, 47
               

               
Conread position:
               
520-975
               

               
Cow position:
               
chr14:3128129-3127674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
89, 82
               

               
Conread position:
               
533-909
               

               
Cow position:
               
chr14:663496-663121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
88, 22
               

               
Conread position:
               
533-960
               

               
Cow position:
               
chr14:3156056-3156483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
124, 139
               

               
Conread position:
               
536-887
               

               
Cow position:
               
chr14:3155486-3155837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
57, 48
               

               
Conread position:
               
536-1007
               

               
Cow position:
               
chr14:680384-680855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
542-967
               

               
Cow position:
               
chr14:3155408-3155833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
114, 130
               

               
Conread position:
               
542-1006
               

               
Cow position:
               
chr14:3061742-3061278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 42
               

               
Conread position:
               
620-1007
               

               
Cow position:
               
chr14:3156059-3156446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
222, 217
               

               
Conread position:
               
689-1007
               

               
Cow position:
               
chr14:3155471-3155789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
692-1003
               

               
Cow position:
               
chr14:663422-663111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
142, 136
               

               
Conread position:
               
746-1003
               

               
Cow position:
               
chr14:3128155-3127898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
761-1003
               

               
Cow position:
               
chr14:663437-663195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
73, 67
               

               
Conread position:
               
355-1001
               

               
Cow position:
               
chr15:48468582-48469236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
666
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
29, 79
               

               
Conread position:
               
397-843
               

               
Cow position:
               
chr15:19139134-19138689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
30, 20
               

               
Conread position:
               
397-1001
               

               
Cow position:
               
chr15:48468458-48469069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
624
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
30, 35
               

               
Conread position:
               
482-1004
               

               
Cow position:
               
chr15:48468459-48468990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
536
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
187, 204
               

               
Conread position:
               
536-1006
               

               
Cow position:
               
chr15:19139162-19138693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
73, 9
               

               
Conread position:
               
352-1007
               

               
Cow position:
               
chr17:41441143-41440491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
663
               

               
Alignm identity:
               
439
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 15
               

               
Conread position:
               
354-1002
               

               
Cow position:
               
chr17:44467754-44468400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
657
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 144
               

               
Conread position:
               
355-887
               

               
Cow position:
               
chr17:41440727-41440191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
540
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 69
               

               
Conread position:
               
356-708
               

               
Cow position:
               
chr17:45350933-45350579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
12, 66
               

               
Conread position:
               
379-1005
               

               
Cow position:
               
chr17:41440867-41440241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
631
               

               
Alignm identity:
               
435
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 215
               

               
Conread position:
               
379-1007
               

               
Cow position:
               
chr17:44467612-44468240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
635
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
218, 229
               

               
Conread position:
               
381-1006
               

               
Cow position:
               
chr17:44467362-44467987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
630
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 120
               

               
Conread position:
               
387-1007
               

               
Cow position:
               
chr17:41440943-41440323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
625
               

               
Alignm identity:
               
427
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 77
               

               
Conread position:
               
391-1006
               

               
Cow position:
               
chr17:44467456-44468071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
620
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 110
               

               
Conread position:
               
391-1007
               

               
Cow position:
               
chr17:41441023-41440407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
621
               

               
Alignm identity:
               
416
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 41
               

               
Conread position:
               
401-1006
               

               
Cow position:
               
chr17:44467550-44468155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
613
               

               
Alignm identity:
               
403
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 100
               

               
Conread position:
               
434-792
               

               
Cow position:
               
chr17:45350935-45350579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
167, 14
               

               
Conread position:
               
461-991
               

               
Cow position:
               
chr17:44467357-44467888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
534
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 209
               

               
Conread position:
               
519-876
               

               
Cow position:
               
chr17:45350934-45350579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
224, 13
               

               
Conread position:
               
350-876
               

               
Cow position:
               
chr18:55497563-55497036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
532
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
30, 246
               

               
Conread position:
               
354-962
               

               
Cow position:
               
chr18:47846622-47846013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
622
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
17, 67
               

               
Conread position:
               
355-888
               

               
Cow position:
               
chr18:56329454-56328917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
540
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
18, 81
               

               
Conread position:
               
357-888
               

               
Cow position:
               
chr18:56391368-56390833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
538
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 74
               

               
Conread position:
               
366-914
               

               
Cow position:
               
chr18:44817733-44818286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
52, 13
               

               
Conread position:
               
368-1003
               

               
Cow position:
               
chr18:22844037-22843392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
652
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
12, 26
               

               
Conread position:
               
369-1007
               

               
Cow position:
               
chr18:56391604-56390966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
644
               

               
Alignm identity:
               
449
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 75
               

               
Conread position:
               
374-991
               

               
Cow position:
               
chr18:22844368-22843749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
628
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
12, 16
               

               
Conread position:
               
376-1007
               

               
Cow position:
               
chr18:56391900-56391302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
635
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 52
               

               
Conread position:
               
379-612
               

               
Cow position:
               
chr18:44818643-44818876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
138, 124
               

               
Conread position:
               
379-993
               

               
Cow position:
               
chr18:56329594-56328980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
619
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
214, 206
               

               
Conread position:
               
387-863
               

               
Cow position:
               
chr18:56329334-56328858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
190, 194
               

               
Conread position:
               
387-972
               

               
Cow position:
               
chr18:52012178-52011593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
589
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
123, 116
               

               
Conread position:
               
387-993
               

               
Cow position:
               
chr18:52012262-52011656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
607
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
387-1007
               

               
Cow position:
               
chr18:56329670-56329050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
621
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
387-1007
               

               
Cow position:
               
chr18:56329838-56329218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
624
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 45
               

               
Conread position:
               
388-888
               

               
Cow position:
               
chr18:53635526-53635027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
184, 205
               

               
Conread position:
               
391-729
               

               
Cow position:
               
chr18:22843674-22843330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
53, 88
               

               
Conread position:
               
391-972
               

               
Cow position:
               
chr18:56391414-56390833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
584
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 205
               

               
Conread position:
               
392-993
               

               
Cow position:
               
chr18:56330085-56329484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
603
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
286, 294
               

               
Conread position:
               
392-1007
               

               
Cow position:
               
chr18:56330169-56329554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
619
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
118, 108
               

               
Conread position:
               
392-1007
               

               
Cow position:
               
chr18:56391497-56390882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
619
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
199, 187
               

               
Conread position:
               
398-993
               

               
Cow position:
               
chr18:52012335-52011740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
108, 117
               

               
Conread position:
               
398-1007
               

               
Cow position:
               
chr18:56329743-56329134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
614
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 181
               

               
Conread position:
               
401-907
               

               
Cow position:
               
chr18:54668836-54668327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
63, 55
               

               
Conread position:
               
401-972
               

               
Cow position:
               
chr18:56316496-56317067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
576
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 16
               

               
Conread position:
               
409-971
               

               
Cow position:
               
chr18:22843827-22843255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
577
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
12, 23
               

               
Conread position:
               
423-979
               

               
Cow position:
               
chr18:55497573-55497014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 111
               

               
Conread position:
               
425-909
               

               
Cow position:
               
chr18:50281810-50282293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
172, 5
               

               
Conread position:
               
426-993
               

               
Cow position:
               
chr18:56316438-56317004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
573
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
84, 5
               

               
Conread position:
               
426-1005
               

               
Cow position:
               
chr18:56329967-56329388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
583
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 76
               

               
Conread position:
               
434-1007
               

               
Cow position:
               
chr18:56329874-56329302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
577
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
246, 6
               

               
Conread position:
               
437-888
               

               
Cow position:
               
chr18:53610236-53609785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
170, 159
               

               
Conread position:
               
438-910
               

               
Cow position:
               
chr18:47846705-47846233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 98
               

               
Conread position:
               
443-1003
               

               
Cow position:
               
chr18:22844384-22843821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
566
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
215, 222
               

               
Conread position:
               
449-1005
               

               
Cow position:
               
chr18:56316376-56316932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
558
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
121, 116
               

               
Conread position:
               
452-706
               

               
Cow position:
               
chr18:56391908-56391654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
58, 50
               

               
Conread position:
               
452-791
               

               
Cow position:
               
chr18:56267466-56267127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
41, 46
               

               
Conread position:
               
452-888
               

               
Cow position:
               
chr18:49032632-49032196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
373, 381
               

               
Conread position:
               
452-888
               

               
Cow position:
               
chr18:49033220-49032784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
452-888
               

               
Cow position:
               
chr18:50281752-50282188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
20, 25
               

               
Conread position:
               
452-888
               

               
Cow position:
               
chr18:53635546-53635110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
155, 144
               

               
Conread position:
               
452-991
               

               
Cow position:
               
chr18:56316211-56316750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
541
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
280, 286
               

               
Conread position:
               
452-993
               

               
Cow position:
               
chr18:49032968-49032427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
545
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
205, 213
               

               
Conread position:
               
452-993
               

               
Cow position:
               
chr18:52012365-52011824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
545
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
58, 49
               

               
Conread position:
               
452-1003
               

               
Cow position:
               
chr18:55497628-55497077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
557
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 142
               

               
Conread position:
               
452-1003
               

               
Cow position:
               
chr18:56316295-56316846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
555
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
196, 202
               

               
Conread position:
               
464-972
               

               
Cow position:
               
chr18:54668857-54668349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
84, 76
               

               
Conread position:
               
465-981
               

               
Cow position:
               
chr18:47846594-47846078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
39, 44
               

               
Conread position:
               
476-993
               

               
Cow position:
               
chr18:56316067-56316584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
212, 203
               

               
Conread position:
               
524-994
               

               
Cow position:
               
chr18:47846703-47846233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 169
               

               
Conread position:
               
535-1006
               

               
Cow position:
               
chr18:42724595-42724124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
51, 59
               

               
Conread position:
               
536-847
               

               
Cow position:
               
chr18:56267466-56267155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
57, 51
               

               
Conread position:
               
536-847
               

               
Cow position:
               
chr18:56391908-56391602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
50, 58
               

               
Conread position:
               
536-993
               

               
Cow position:
               
chr18:56128199-56128656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
368, 386
               

               
Conread position:
               
536-1003
               

               
Cow position:
               
chr18:52012448-52011982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
227, 69
               

               
Conread position:
               
536-1005
               

               
Cow position:
               
chr18:52012365-52011896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
220, 233
               

               
Conread position:
               
536-1007
               

               
Cow position:
               
chr18:55497628-55497157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
290, 314
               

               
Conread position:
               
553-1006
               

               
Cow position:
               
chr18:55497695-55497242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
357, 365
               

               
Conread position:
               
557-833
               

               
Cow position:
               
chr18:44818569-44818845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
102, 114
               

               
Conread position:
               
568-1003
               

               
Cow position:
               
chr18:54668837-54668402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
64, 56
               

               
Conread position:
               
619-959
               

               
Cow position:
               
chr18:56267467-56267127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
42, 47
               

               
Conread position:
               
620-1007
               

               
Cow position:
               
chr18:42724594-42724207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
626-835
               

               
Cow position:
               
chr18:54687742-54687951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
32, 61
               

               
Conread position:
               
644-1006
               

               
Cow position:
               
chr18:54668845-54668483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
72, 64
               

               
Conread position:
               
690-1003
               

               
Cow position:
               
chr18:47846705-47846392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
55, 79
               

               
Conread position:
               
691-945
               

               
Cow position:
               
chr18:44818619-44818873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
61, 68
               

               
Conread position:
               
691-957
               

               
Cow position:
               
chr18:54664067-54664332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
59, 17
               

               
Conread position:
               
691-1005
               

               
Cow position:
               
chr18:56391921-56391611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
162, 156
               

               
Conread position:
               
692-1004
               

               
Cow position:
               
chr18:44817891-44818203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
49, 56
               

               
Conread position:
               
704-993
               

               
Cow position:
               
chr18:56267466-56267177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
50, 55
               

               
Conread position:
               
766-1007
               

               
Cow position:
               
chr18:56391930-56391689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
15, 23
               

               
Conread position:
               
776-1006
               

               
Cow position:
               
chr18:44818620-44818850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
135, 145
               

               
Conread position:
               
190-530
               

               
Cow position:
               
chr2:14095310-14095652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 114
               

               
Conread position:
               
386-1007
               

               
Cow position:
               
chr2:5875172-5874551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
627
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
30, 46
               

               
Conread position:
               
413-967
               

               
Cow position:
               
chr2:82799732-82800285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
556
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
162, 18
               

               
Conread position:
               
431-936
               

               
Cow position:
               
chr2:82799833-82800338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
449-977
               

               
Cow position:
               
chr2:82799515-82800043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
68, 56
               

               
Conread position:
               
452-1002
               

               
Cow position:
               
chr2:82799686-82800236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
552
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
133, 141
               

               
Conread position:
               
379-673
               

               
Cow position:
               
chr21:48930328-48930039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
17, 13
               

               
Conread position:
               
383-994
               

               
Cow position:
               
chr21:12608671-12608060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
615
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
45, 49
               

               
Conread position:
               
387-1006
               

               
Cow position:
               
chr21:12659263-12659882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
623
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
198, 206
               

               
Conread position:
               
387-1007
               

               
Cow position:
               
chr21:12659179-12659799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
624
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
221, 215
               

               
Conread position:
               
391-976
               

               
Cow position:
               
chr21:12659435-12660020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
587
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
352, 358
               

               
Conread position:
               
391-1006
               

               
Cow position:
               
chr21:12659015-12659630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
617
               

               
Alignm identity:
               
404
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
598, 593
               

               
Conread position:
               
391-1006
               

               
Cow position:
               
chr21:12659351-12659966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
619
               

               
Alignm identity:
               
400
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 111
               

               
Conread position:
               
391-1007
               

               
Cow position:
               
chr21:12659099-12659715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
619
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 211
               

               
Conread position:
               
419-1005
               

               
Cow position:
               
chr21:12608551-12607965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
589
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
183, 190
               

               
Conread position:
               
423-1003
               

               
Cow position:
               
chr21:12608715-12608135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
584
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 171
               

               
Conread position:
               
431-1002
               

               
Cow position:
               
chr21:12608791-12608220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
573
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
165, 149
               

               
Conread position:
               
447-1007
               

               
Cow position:
               
chr21:12658819-12659379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 152
               

               
Conread position:
               
448-1007
               

               
Cow position:
               
chr21:12658988-12659547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 147
               

               
Conread position:
               
449-972
               

               
Cow position:
               
chr21:12608857-12608334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
525
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
291, 300
               

               
Conread position:
               
536-885
               

               
Cow position:
               
chr21:34222892-34222543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
151, 157
               

               
Conread position:
               
536-993
               

               
Cow position:
               
chr22:12418951-12418494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
146, 134
               

               
Conread position:
               
3-342
               

               
Cow position:
               
chr25:24392155-24391820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 11
               

               
Conread position:
               
339-1008
               

               
Cow position:
               
chr25:24385454-24384785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
670
               

               
Alignm identity:
               
632
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
349-970
               

               
Cow position:
               
chr25:3636588-3635969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
626
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 32
               

               
Conread position:
               
354-835
               

               
Cow position:
               
chr25:24385191-24384706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 152
               

               
Conread position:
               
354-937
               

               
Cow position:
               
chr25:33530205-33530789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
588
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 79
               

               
Conread position:
               
356-1007
               

               
Cow position:
               
chr25:25652583-25653238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
658
               

               
Alignm identity:
               
439
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 336
               

               
Conread position:
               
367-835
               

               
Cow position:
               
chr25:33529003-33529472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 237
               

               
Conread position:
               
369-874
               

               
Cow position:
               
chr25:3675904-3676405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 17
               

               
Conread position:
               
379-545
               

               
Cow position:
               
chr25:33530651-33530817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
379-710
               

               
Cow position:
               
chr25:33506834-33507166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
289, 310
               

               
Conread position:
               
379-738
               

               
Cow position:
               
chr25:22940514-22940155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
146, 129
               

               
Conread position:
               
379-748
               

               
Cow position:
               
chr25:4657379-4657005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
43, 39
               

               
Conread position:
               
379-751
               

               
Cow position:
               
chr25:25652946-25653318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 214
               

               
Conread position:
               
379-1003
               

               
Cow position:
               
chr25:33530147-33530771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
630
               

               
Alignm identity:
               
446
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 53
               

               
Conread position:
               
380-741
               

               
Cow position:
               
chr25:22941374-22941013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
51, 41
               

               
Conread position:
               
380-912
               

               
Cow position:
               
chr25:24385245-24384713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
538
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 40
               

               
Conread position:
               
381-602
               

               
Cow position:
               
chr25:33530570-33530790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
211, 11
               

               
Conread position:
               
381-993
               

               
Cow position:
               
chr25:25652697-25653308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
615
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
211, 11
               

               
Conread position:
               
381-1003
               

               
Cow position:
               
chr25:25652277-25652898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
627
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 6
               

               
Conread position:
               
383-682
               

               
Cow position:
               
chr25:3664273-3664572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
219, 225
               

               
Conread position:
               
383-811
               

               
Cow position:
               
chr25:4657459-4657030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 49
               

               
Conread position:
               
387-888
               

               
Cow position:
               
chr25:33157295-33156794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
123, 114
               

               
Conread position:
               
387-968
               

               
Cow position:
               
chr25:3664025-3664606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
587
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 45
               

               
Conread position:
               
389-1003
               

               
Cow position:
               
chr25:24385320-24384706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
621
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 148
               

               
Conread position:
               
390-835
               

               
Cow position:
               
chr25:33506683-33507122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 31
               

               
Conread position:
               
391-636
               

               
Cow position:
               
chr25:3636992-3636744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
193, 202
               

               
Conread position:
               
391-695
               

               
Cow position:
               
chr25:34473773-34474074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
34, 41
               

               
Conread position:
               
391-914
               

               
Cow position:
               
chr25:25652874-25653400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
352, 358
               

               
Conread position:
               
391-936
               

               
Cow position:
               
chr25:34473521-34474063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 218
               

               
Conread position:
               
391-1003
               

               
Cow position:
               
chr25:25652370-25652982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
618
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 106
               

               
Conread position:
               
391-1003
               

               
Cow position:
               
chr25:25652454-25653066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
615
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 206
               

               
Conread position:
               
391-1003
               

               
Cow position:
               
chr25:25652538-25653150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
615
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 202
               

               
Conread position:
               
391-1007
               

               
Cow position:
               
chr25:3663945-3664561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
620
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 41
               

               
Conread position:
               
392-1003
               

               
Cow position:
               
chr25:33530076-33530687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
617
               

               
Alignm identity:
               
442
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 85
               

               
Conread position:
               
398-783
               

               
Cow position:
               
chr25:33529119-33529504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 34
               

               
Conread position:
               
398-1007
               

               
Cow position:
               
chr25:25652209-25652818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
611
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
260, 267
               

               
Conread position:
               
401-862
               

               
Cow position:
               
chr25:33530337-33530798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 19
               

               
Conread position:
               
431-887
               

               
Cow position:
               
chr25:23267442-23266993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
151, 163
               

               
Conread position:
               
431-936
               

               
Cow position:
               
chr25:24398933-24398431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
80, 69
               

               
Conread position:
               
439-1003
               

               
Cow position:
               
chr25:25652166-25652730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
568
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 146
               

               
Conread position:
               
448-769
               

               
Cow position:
               
chr25:34734023-34733701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
11, 149
               

               
Conread position:
               
452-806
               

               
Cow position:
               
chr25:22940525-22940171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
169, 132
               

               
Conread position:
               
452-888
               

               
Cow position:
               
chr25:33157398-33156962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
455-841
               

               
Cow position:
               
chr25:36844626-36844249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
162, 167
               

               
Conread position:
               
456-1007
               

               
Cow position:
               
chr25:3663926-3664477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
555
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 137
               

               
Conread position:
               
458-1008
               

               
Cow position:
               
chr25:24398990-24398443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
553
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
216, 181
               

               
Conread position:
               
464-846
               

               
Cow position:
               
chr25:22941374-22940994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
40, 47
               

               
Conread position:
               
464-1005
               

               
Cow position:
               
chr25:3636559-3636018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
545
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 31
               

               
Conread position:
               
466-1003
               

               
Cow position:
               
chr25:34473512-34474046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 118
               

               
Conread position:
               
467-931
               

               
Cow position:
               
chr25:22235834-22236299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
9, 36
               

               
Conread position:
               
474-895
               

               
Cow position:
               
chr25:4657452-4657031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 27
               

               
Conread position:
               
474-927
               

               
Cow position:
               
chr25:33529027-33529480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 120
               

               
Conread position:
               
521-1005
               

               
Cow position:
               
chr25:34762889-34763370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
74, 67
               

               
Conread position:
               
524-1007
               

               
Cow position:
               
chr25:25652167-25652650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
219, 225
               

               
Conread position:
               
532-863
               

               
Cow position:
               
chr25:34734023-34733691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
11, 54
               

               
Conread position:
               
533-1003
               

               
Cow position:
               
chr25:34763150-34763617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
52, 60
               

               
Conread position:
               
536-882
               

               
Cow position:
               
chr25:22940525-22940179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
158, 151
               

               
Conread position:
               
540-936
               

               
Cow position:
               
chr25:3675987-3676383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 129
               

               
Conread position:
               
548-899
               

               
Cow position:
               
chr25:22941374-22941023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
62, 57
               

               
Conread position:
               
550-972
               

               
Cow position:
               
chr25:4657460-4657038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 200
               

               
Conread position:
               
550-1006
               

               
Cow position:
               
chr25:34473512-34473965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
37, 44
               

               
Conread position:
               
559-1008
               

               
Cow position:
               
chr25:33529028-33529477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 35
               

               
Conread position:
               
560-1007
               

               
Cow position:
               
chr25:33530076-33530523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 35
               

               
Conread position:
               
587-1003
               

               
Cow position:
               
chr25:3675952-3676366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 29
               

               
Conread position:
               
602-1007
               

               
Cow position:
               
chr25:33506718-33507126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 162
               

               
Conread position:
               
615-1007
               

               
Cow position:
               
chr25:4657479-4657087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 54
               

               
Conread position:
               
619-982
               

               
Cow position:
               
chr25:22940526-22940163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
75, 54
               

               
Conread position:
               
619-1006
               

               
Cow position:
               
chr25:22235903-22236290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
33, 28
               

               
Conread position:
               
620-1002
               

               
Cow position:
               
chr25:23267421-23267046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
131, 122
               

               
Conread position:
               
626-945
               

               
Cow position:
               
chr25:34734012-34733693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
117, 138
               

               
Conread position:
               
631-1006
               

               
Cow position:
               
chr25:34473509-34473881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
112, 129
               

               
Conread position:
               
644-959
               

               
Cow position:
               
chr25:3637078-3636756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
686-976
               

               
Cow position:
               
chr25:22941321-22941030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
8, 79
               

               
Conread position:
               
692-967
               

               
Cow position:
               
chr25:23267272-23266997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
128, 51
               

               
Conread position:
               
692-1007
               

               
Cow position:
               
chr25:3636499-3636184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
697-1007
               

               
Cow position:
               
chr25:33530046-33530355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
728-1004
               

               
Cow position:
               
chr25:3637078-3636799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
38, 25
               

               
Conread position:
               
766-1006
               

               
Cow position:
               
chr25:33506717-33506957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
792-1007
               

               
Cow position:
               
chr25:3675987-3676202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
53, 45
               

               
Conread position:
               
387-730
               

               
Cow position:
               
chr28:34696174-34696517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
401-875
               

               
Cow position:
               
chr28:34696104-34696578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
324, 341
               

               
Conread position:
               
452-936
               

               
Cow position:
               
chr28:34696071-34696555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
133, 141
               

               
Conread position:
               
536-1007
               

               
Cow position:
               
chr28:34695987-34696458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
145, 152
               

               
Conread position:
               
536-1007
               

               
Cow position:
               
chr28:34696071-34696542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
57, 48
               

               
Conread position:
               
608-1003
               

               
Cow position:
               
chr28:34695891-34696286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
94, 72
               

               
Conread position:
               
663-1007
               

               
Cow position:
               
chr28:33210262-33210607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
299, 0
               

               
Conread position:
               
379-946
               

               
Cow position:
               
chr3:20194724-20195291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
572
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 53
               

               
Conread position:
               
381-669
               

               
Cow position:
               
chr3:20194451-20194735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
129, 11
               

               
Conread position:
               
383-874
               

               
Cow position:
               
chr3:20194812-20195303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 118
               

               
Conread position:
               
451-1003
               

               
Cow position:
               
chr3:20194436-20195012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
581
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 147
               

               
Conread position:
               
463-1006
               

               
Cow position:
               
chr3:20194724-20195267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
548
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 130
               

               
Conread position:
               
547-1003
               

               
Cow position:
               
chr3:20194724-20195180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 47
               

               
Conread position:
               
590-917
               

               
Cow position:
               
chr3:20194408-20194732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
153, 34
               

               
Conread position:
               
688-971
               

               
Cow position:
               
chr3:20194422-20194706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
149, 15
               

               
Conread position:
               
787-1008
               

               
Cow position:
               
chr3:20194436-20194657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
334-936
               

               
Cow position:
               
chr4:65121407-65122008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
609
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 46
               

               
Conread position:
               
346-1003
               

               
Cow position:
               
chr4:65495333-65494645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
693
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
24, 90
               

               
Conread position:
               
355-793
               

               
Cow position:
               
chr4:65350358-65350794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
23, 78
               

               
Conread position:
               
357-992
               

               
Cow position:
               
chr4:65703604-65702968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
644
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 76
               

               
Conread position:
               
359-709
               

               
Cow position:
               
chr4:65350443-65350794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
39, 14
               

               
Conread position:
               
375-909
               

               
Cow position:
               
chr4:65349875-65350409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
540
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
69, 76
               

               
Conread position:
               
376-667
               

               
Cow position:
               
chr4:65261469-65261178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
209, 221
               

               
Conread position:
               
379-631
               

               
Cow position:
               
chr4:65494681-65494429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
45, 53
               

               
Conread position:
               
379-879
               

               
Cow position:
               
chr4:65261634-65261133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
40, 53
               

               
Conread position:
               
380-965
               

               
Cow position:
               
chr4:65261719-65261131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
596
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 8
               

               
Conread position:
               
386-911
               

               
Cow position:
               
chr4:65121542-65122067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
532
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 46
               

               
Conread position:
               
388-628
               

               
Cow position:
               
chr4:65157942-65158182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
28, 44
               

               
Conread position:
               
388-1007
               

               
Cow position:
               
chr4:65146431-65147053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
634
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
139, 149
               

               
Conread position:
               
389-1005
               

               
Cow position:
               
chr4:65350057-65350670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
621
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
205, 196
               

               
Conread position:
               
391-961
               

               
Cow position:
               
chr4:65350227-65350794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
573
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
351, 258
               

               
Conread position:
               
391-967
               

               
Cow position:
               
chr4:65495011-65494429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
589
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 125
               

               
Conread position:
               
392-804
               

               
Cow position:
               
chr4:65702863-65702453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
33, 40
               

               
Conread position:
               
393-1006
               

               
Cow position:
               
chr4:65349977-65350587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
616
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 216
               

               
Conread position:
               
398-679
               

               
Cow position:
               
chr4:65546415-65546133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
24, 34
               

               
Conread position:
               
409-835
               

               
Cow position:
               
chr4:65702927-65702504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
181, 28
               

               
Conread position:
               
422-1006
               

               
Cow position:
               
chr4:65349838-65350422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
592
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 34
               

               
Conread position:
               
440-628
               

               
Cow position:
               
chr4:65121203-65121391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
447-963
               

               
Cow position:
               
chr4:65146575-65147093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
532
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
96, 5
               

               
Conread position:
               
453-682
               

               
Cow position:
               
chr4:65121132-65121361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
456-796
               

               
Cow position:
               
chr4:65157833-65158182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
14, 21
               

               
Conread position:
               
458-836
               

               
Cow position:
               
chr4:65146417-65146793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
217, 230
               

               
Conread position:
               
458-1006
               

               
Cow position:
               
chr4:65495301-65494726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
579
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
52, 58
               

               
Conread position:
               
459-1006
               

               
Cow position:
               
chr4:65261725-65261175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
556
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 147
               

               
Conread position:
               
461-978
               

               
Cow position:
               
chr4:65703667-65703151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 126
               

               
Conread position:
               
467-1006
               

               
Cow position:
               
chr4:65495019-65494474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
554
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 130
               

               
Conread position:
               
484-1008
               

               
Cow position:
               
chr4:65349816-65350340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
534
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
63, 56
               

               
Conread position:
               
510-754
               

               
Cow position:
               
chr4:65121102-65121349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
542-986
               

               
Cow position:
               
chr4:65702881-65702440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
246, 239
               

               
Conread position:
               
545-1003
               

               
Cow position:
               
chr4:65703667-65703209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 51
               

               
Conread position:
               
576-1007
               

               
Cow position:
               
chr4:65702934-65702500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
12, 35
               

               
Conread position:
               
598-1007
               

               
Cow position:
               
chr4:65121586-65121995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
238, 254
               

               
Conread position:
               
624-961
               

               
Cow position:
               
chr4:65157833-65158179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
51, 55
               

               
Conread position:
               
626-1008
               

               
Cow position:
               
chr4:65349790-65350172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
89, 82
               

               
Conread position:
               
629-1006
               

               
Cow position:
               
chr4:65703667-65703290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 64
               

               
Conread position:
               
639-1007
               

               
Cow position:
               
chr4:65121543-65121911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
36, 53
               

               
Conread position:
               
644-1007
               

               
Cow position:
               
chr4:65120978-65121350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
35, 49
               

               
Conread position:
               
708-1006
               

               
Cow position:
               
chr4:65157833-65158140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
49, 58
               

               
Conread position:
               
710-1007
               

               
Cow position:
               
chr4:65146417-65146714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
30, 39
               

               
Conread position:
               
713-1007
               

               
Cow position:
               
chr4:65703667-65703373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
46, 51
               

               
Conread position:
               
719-937
               

               
Cow position:
               
chr4:65121146-65121364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
24, 31
               

               
Conread position:
               
356-888
               

               
Cow position:
               
chr6:49428878-49429411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
537
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
24, 254
               

               
Conread position:
               
381-1007
               

               
Cow position:
               
chr6:49428401-49429026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
630
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
312, 11
               

               
Conread position:
               
387-1003
               

               
Cow position:
               
chr6:49428322-49428938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
625
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 45
               

               
Conread position:
               
391-885
               

               
Cow position:
               
chr6:49428998-49429492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
26, 34
               

               
Conread position:
               
391-993
               

               
Cow position:
               
chr6:49428662-49429264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
604
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 131
               

               
Conread position:
               
391-1007
               

               
Cow position:
               
chr6:49428242-49428858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
623
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 207
               

               
Conread position:
               
391-1007
               

               
Cow position:
               
chr6:49428494-49429110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
622
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 111
               

               
Conread position:
               
391-1007
               

               
Cow position:
               
chr6:49428578-49429194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
618
               

               
Alignm identity:
               
403
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
352, 358
               

               
Conread position:
               
391-1007
               

               
Cow position:
               
chr6:49428746-49429362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
621
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 27
               

               
Conread position:
               
446-976
               

               
Cow position:
               
chr6:49428885-49429415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
533
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 57
               

               
Conread position:
               
447-1006
               

               
Cow position:
               
chr6:49428214-49428773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
564
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
253, 249
               

               
Conread position:
               
452-728
               

               
Cow position:
               
chr6:49429227-49429503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
58, 49
               

               
Conread position:
               
531-1008
               

               
Cow position:
               
chr6:49428214-49428691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 162
               

               
Conread position:
               
355-1007
               

               
Cow position:
               
chr7:12293322-12293978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
659
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 337
               

               
Conread position:
               
366-991
               

               
Cow position:
               
chr7:12293253-12293878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
629
               

               
Alignm identity:
               
424
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
219, 227
               

               
Conread position:
               
377-971
               

               
Cow position:
               
chr7:12293432-12294024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
596
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
303, 311
               

               
Conread position:
               
379-853
               

               
Cow position:
               
chr7:28846677-28847149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
324, 318
               

               
Conread position:
               
384-972
               

               
Cow position:
               
chr7:28846430-28847018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
591
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
270, 266
               

               
Conread position:
               
387-914
               

               
Cow position:
               
chr7:28846601-28847127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
30, 37
               

               
Conread position:
               
392-1001
               

               
Cow position:
               
chr7:28846522-28847130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
614
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
201, 192
               

               
Conread position:
               
464-1007
               

               
Cow position:
               
chr7:12293267-12293810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 37
               

               
Conread position:
               
484-1003
               

               
Cow position:
               
chr7:28846446-28846965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
525
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 16
               

               
Conread position:
               
555-1003
               

               
Cow position:
               
chr7:28846433-28846881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 132
               

               
Conread position:
               
663-1006
               

               
Cow position:
               
chr7:28846457-28846800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
19, 30
               

               
Conread position:
               
371-1007
               

               
Cow position:
               
chrX:13826954-13826318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
640
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
311, 315
               

               
Conread position:
               
401-822
               

               
Cow position:
               
chrX:13826588-13826167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
192, 184
               

               
Conread position:
               
412-875
               

               
Cow position:
               
chrX:13826661-13826198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
98, 91
               

               
Conread position:
               
436-958
               

               
Cow position:
               
chrX:14181415-14180893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 65
               

               
Conread position:
               
438-1007
               

               
Cow position:
               
chrX:13826803-13826234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
572
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
149, 169
               

               
Conread position:
               
451-996
               

               
Cow position:
               
chrX:14181484-14180939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
302, 308
               

               
Conread position:
               
452-959
               

               
Cow position:
               
chrX:13826705-13826198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
300, 309
               

               
Conread position:
               
467-1005
               

               
Cow position:
               
chrX:14181636-14181098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
541
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
214, 224
               

               
Conread position:
               
589-1007
               

               
Cow position:
               
chrX:14181429-14181012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
98, 13