• Home
• Research
• Resources
• Publications
• About
• People
• Events
• Jobs
• News
• Contact

Cow genome map

           
Conread name:
           
Ss1.1-Pig4-TMW8059M19.5
        

               
Conread position:
               
1-403
               

               
Cow position:
               
chr10:24102747-24102346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
92, 48
               

               
Conread position:
               
1-504
               

               
Cow position:
               
chr10:23440396-23439867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
535
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
89, 56
               

               
Conread position:
               
2-253
               

               
Cow position:
               
chr10:125161-125417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
109, 57
               

               
Conread position:
               
2-253
               

               
Cow position:
               
chr10:1378275-1378531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
100, 60
               

               
Conread position:
               
2-264
               

               
Cow position:
               
chr10:8290747-8291014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
94, 60
               

               
Conread position:
               
2-264
               

               
Cow position:
               
chr10:22102007-22102273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
105, 57
               

               
Conread position:
               
2-264
               

               
Cow position:
               
chr10:39040536-39040272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
59, 78
               

               
Conread position:
               
2-351
               

               
Cow position:
               
chr10:32701499-32701853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
86, 57
               

               
Conread position:
               
2-403
               

               
Cow position:
               
chr10:2120242-2119829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
105, 34
               

               
Conread position:
               
2-403
               

               
Cow position:
               
chr10:7281319-7280918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
105, 57
               

               
Conread position:
               
2-403
               

               
Cow position:
               
chr10:14335080-14334661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
59, 78
               

               
Conread position:
               
2-403
               

               
Cow position:
               
chr10:29845879-29845460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
105, 57
               

               
Conread position:
               
3-257
               

               
Cow position:
               
chr10:53242802-53243060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
73, 54
               

               
Conread position:
               
22-256
               

               
Cow position:
               
chr10:15747228-15746991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
74, 16
               

               
Conread position:
               
30-264
               

               
Cow position:
               
chr10:49653065-49652823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
60, 22
               

               
Conread position:
               
49-256
               

               
Cow position:
               
chr10:59861346-59861555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
53, 188
               

               
Conread position:
               
85-400
               

               
Cow position:
               
chr10:47966063-47965735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
11, 84
               

               
Conread position:
               
123-449
               

               
Cow position:
               
chr10:5108263-5107918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
83, 45
               

               
Conread position:
               
1-255
               

               
Cow position:
               
chr11:9734267-9734016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
95, 61
               

               
Conread position:
               
1-403
               

               
Cow position:
               
chr11:15696134-15695714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
99, 11
               

               
Conread position:
               
1-420
               

               
Cow position:
               
chr11:53681819-53682264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 55
               

               
Conread position:
               
1-431
               

               
Cow position:
               
chr11:38835029-38834584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
74, 58
               

               
Conread position:
               
2-403
               

               
Cow position:
               
chr11:16985911-16985511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
7, 55
               

               
Conread position:
               
2-403
               

               
Cow position:
               
chr11:19102089-19101670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
94, 57
               

               
Conread position:
               
2-403
               

               
Cow position:
               
chr11:24393726-24394138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
114, 57
               

               
Conread position:
               
2-403
               

               
Cow position:
               
chr11:26124520-26124102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
105, 57
               

               
Conread position:
               
2-403
               

               
Cow position:
               
chr11:41170289-41169869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
105, 57
               

               
Conread position:
               
2-403
               

               
Cow position:
               
chr11:43514226-43513807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
81, 57
               

               
Conread position:
               
2-403
               

               
Cow position:
               
chr11:58134800-58135221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
94, 57
               

               
Conread position:
               
2-414
               

               
Cow position:
               
chr11:10303413-10303828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
94, 21
               

               
Conread position:
               
3-257
               

               
Cow position:
               
chr11:53116491-53116234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
93, 13
               

               
Conread position:
               
3-402
               

               
Cow position:
               
chr11:46724291-46723880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
93, 48
               

               
Conread position:
               
3-403
               

               
Cow position:
               
chr11:29668201-29667781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
100, 56
               

               
Conread position:
               
5-257
               

               
Cow position:
               
chr11:9763336-9763084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
91, 31
               

               
Conread position:
               
23-434
               

               
Cow position:
               
chr11:47759856-47759426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
84, 36
               

               
Conread position:
               
24-255
               

               
Cow position:
               
chr11:58834347-58834579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
65, 33
               

               
Conread position:
               
28-403
               

               
Cow position:
               
chr11:17326811-17327186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
209, 21
               

               
Conread position:
               
30-402
               

               
Cow position:
               
chr11:35504981-35504598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
82, 27
               

               
Conread position:
               
33-285
               

               
Cow position:
               
chr11:44013043-44013293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
63, 26
               

               
Conread position:
               
44-351
               

               
Cow position:
               
chr11:73462833-73462519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
52, 12
               

               
Conread position:
               
74-297
               

               
Cow position:
               
chr11:84515806-84515569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
22, 8
               

               
Conread position:
               
83-395
               

               
Cow position:
               
chr11:2906159-2905821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
9, 236
               

               
Conread position:
               
99-254
               

               
Cow position:
               
chr11:80792482-80792325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
28, 141
               

               
Conread position:
               
108-420
               

               
Cow position:
               
chr11:43070810-43070483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
110-253
               

               
Cow position:
               
chr11:4027042-4026898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
130, 0
               

               
Conread position:
               
128-260
               

               
Cow position:
               
chr11:53431522-53431388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr12:41380373-41380641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
95, 58
               

               
Conread position:
               
1-416
               

               
Cow position:
               
chr12:15717105-15716683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
38, 53
               

               
Conread position:
               
2-351
               

               
Cow position:
               
chr12:10681763-10681402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
79, 54
               

               
Conread position:
               
2-401
               

               
Cow position:
               
chr12:11098931-11099332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
107, 57
               

               
Conread position:
               
2-403
               

               
Cow position:
               
chr12:27855271-27854852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
47, 101
               

               
Conread position:
               
2-403
               

               
Cow position:
               
chr12:27932211-27931792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
94, 60
               

               
Conread position:
               
2-403
               

               
Cow position:
               
chr12:42858842-42858425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
88, 60
               

               
Conread position:
               
3-257
               

               
Cow position:
               
chr12:21289690-21289948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
102, 46
               

               
Conread position:
               
4-403
               

               
Cow position:
               
chr12:6405948-6405530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
92, 40
               

               
Conread position:
               
6-264
               

               
Cow position:
               
chr12:14661932-14661668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
39, 52
               

               
Conread position:
               
33-257
               

               
Cow position:
               
chr12:33867494-33867718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
16, 185
               

               
Conread position:
               
70-421
               

               
Cow position:
               
chr12:27513099-27513472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
26, 147
               

               
Conread position:
               
83-354
               

               
Cow position:
               
chr12:11690148-11689873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
13, 35
               

               
Conread position:
               
2-257
               

               
Cow position:
               
chr13:20925481-20925736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
108, 38
               

               
Conread position:
               
2-264
               

               
Cow position:
               
chr13:32737349-32737082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
105, 57
               

               
Conread position:
               
2-403
               

               
Cow position:
               
chr13:1592677-1592261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
10, 15
               

               
Conread position:
               
2-403
               

               
Cow position:
               
chr13:3653845-3653426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
10, 15
               

               
Conread position:
               
2-403
               

               
Cow position:
               
chr13:13900344-13900761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
94, 57
               

               
Conread position:
               
2-403
               

               
Cow position:
               
chr13:15923904-15923486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
59, 14
               

               
Conread position:
               
2-502
               

               
Cow position:
               
chr13:34325085-34324585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
94, 57
               

               
Conread position:
               
3-257
               

               
Cow position:
               
chr13:24631556-24631807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
117, 53
               

               
Conread position:
               
3-257
               

               
Cow position:
               
chr13:38077520-38077268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
97, 54
               

               
Conread position:
               
3-351
               

               
Cow position:
               
chr13:36959091-36958749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
119, 54
               

               
Conread position:
               
3-398
               

               
Cow position:
               
chr13:47276630-47277033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
97, 54
               

               
Conread position:
               
4-287
               

               
Cow position:
               
chr13:15450642-15450359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
49, 5
               

               
Conread position:
               
42-256
               

               
Cow position:
               
chr13:6085731-6085520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
54, 15
               

               
Conread position:
               
111-257
               

               
Cow position:
               
chr13:25884731-25884878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
113-254
               

               
Cow position:
               
chr13:52862712-52862570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
86, 68
               

               
Conread position:
               
126-253
               

               
Cow position:
               
chr13:28670660-28670532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
126-402
               

               
Cow position:
               
chr13:34041731-34041445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
112, 181
               

               
Conread position:
               
126-403
               

               
Cow position:
               
chr13:15543144-15543434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
112, 47
               

               
Conread position:
               
1-231
               

               
Cow position:
               
chr14:6160320-6160554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
93, 70
               

               
Conread position:
               
1-232
               

               
Cow position:
               
chr14:8679646-8679419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
95, 56
               

               
Conread position:
               
1-272
               

               
Cow position:
               
chr14:18633330-18633607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
2-260
               

               
Cow position:
               
chr14:20782811-20783072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
94, 57
               

               
Conread position:
               
2-260
               

               
Cow position:
               
chr14:33402039-33402298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
7, 98
               

               
Conread position:
               
2-264
               

               
Cow position:
               
chr14:17000710-17000443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
105, 57
               

               
Conread position:
               
2-403
               

               
Cow position:
               
chr14:12742718-12742300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
105, 57
               

               
Conread position:
               
2-403
               

               
Cow position:
               
chr14:17685747-17686167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
10, 15
               

               
Conread position:
               
2-454
               

               
Cow position:
               
chr14:5529417-5529892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
105, 57
               

               
Conread position:
               
3-257
               

               
Cow position:
               
chr14:17052004-17051737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
53, 9
               

               
Conread position:
               
6-396
               

               
Cow position:
               
chr14:20971825-20971429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
231, 53
               

               
Conread position:
               
123-450
               

               
Cow position:
               
chr14:29580647-29580969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
14, 95
               

               
Conread position:
               
1-251
               

               
Cow position:
               
chr15:444955-445210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
23, 15
               

               
Conread position:
               
2-259
               

               
Cow position:
               
chr15:4961989-4962248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
94, 57
               

               
Conread position:
               
2-264
               

               
Cow position:
               
chr15:4386111-4386378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
105, 57
               

               
Conread position:
               
2-264
               

               
Cow position:
               
chr15:21665394-21665128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
105, 57
               

               
Conread position:
               
2-351
               

               
Cow position:
               
chr15:14609281-14608937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
27, 35
               

               
Conread position:
               
2-357
               

               
Cow position:
               
chr15:53136869-53136502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
105, 57
               

               
Conread position:
               
2-403
               

               
Cow position:
               
chr15:8811673-8811255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
105, 57
               

               
Conread position:
               
2-403
               

               
Cow position:
               
chr15:18577068-18577482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
111, 40
               

               
Conread position:
               
2-403
               

               
Cow position:
               
chr15:19737699-19737285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
52, 58
               

               
Conread position:
               
2-418
               

               
Cow position:
               
chr15:18332475-18332044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
109, 60
               

               
Conread position:
               
3-403
               

               
Cow position:
               
chr15:5207246-5207659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
96, 54
               

               
Conread position:
               
5-260
               

               
Cow position:
               
chr15:47772506-47772762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
90, 44
               

               
Conread position:
               
17-403
               

               
Cow position:
               
chr15:23310761-23310367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
83, 42
               

               
Conread position:
               
58-253
               

               
Cow position:
               
chr15:47335238-47335040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
42, 23
               

               
Conread position:
               
70-238
               

               
Cow position:
               
chr15:34367275-34367101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
74-401
               

               
Cow position:
               
chr15:2140696-2140355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
22, 15
               

               
Conread position:
               
75-403
               

               
Cow position:
               
chr15:35833846-35834186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
29, 57
               

               
Conread position:
               
75-432
               

               
Cow position:
               
chr15:18069085-18068706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
25, 249
               

               
Conread position:
               
98-401
               

               
Cow position:
               
chr15:2145326-2145641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
17, 180
               

               
Conread position:
               
100-412
               

               
Cow position:
               
chr15:33798045-33797735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
141, 17
               

               
Conread position:
               
103-257
               

               
Cow position:
               
chr15:19232762-19232609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
134, 10
               

               
Conread position:
               
114-266
               

               
Cow position:
               
chr15:18258416-18258263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
114-351
               

               
Cow position:
               
chr15:33494099-33494341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
152, 119
               

               
Conread position:
               
138-425
               

               
Cow position:
               
chr15:40331057-40330761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
75, 14
               

               
Conread position:
               
152-475
               

               
Cow position:
               
chr15:20442276-20441946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
87, 157
               

               
Conread position:
               
1-397
               

               
Cow position:
               
chr16:44867486-44867095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
26, 30
               

               
Conread position:
               
1-405
               

               
Cow position:
               
chr16:33012705-33013122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
113, 60
               

               
Conread position:
               
2-264
               

               
Cow position:
               
chr16:41166762-41166495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
105, 57
               

               
Conread position:
               
2-351
               

               
Cow position:
               
chr16:12537916-12537559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
94, 57
               

               
Conread position:
               
2-403
               

               
Cow position:
               
chr16:23535881-23535464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
86, 57
               

               
Conread position:
               
2-403
               

               
Cow position:
               
chr16:26663758-26664179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
105, 57
               

               
Conread position:
               
2-430
               

               
Cow position:
               
chr16:15493511-15493956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
105, 57
               

               
Conread position:
               
2-431
               

               
Cow position:
               
chr16:15185080-15185524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
90, 57
               

               
Conread position:
               
2-454
               

               
Cow position:
               
chr16:1567444-1566975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
105, 57
               

               
Conread position:
               
5-224
               

               
Cow position:
               
chr16:33342601-33342824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
91, 52
               

               
Conread position:
               
14-267
               

               
Cow position:
               
chr16:17667867-17667621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
243, 43
               

               
Conread position:
               
56-397
               

               
Cow position:
               
chr16:52887978-52888325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
182, 51
               

               
Conread position:
               
75-287
               

               
Cow position:
               
chr16:29972235-29972017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
25, 82
               

               
Conread position:
               
82-402
               

               
Cow position:
               
chr16:27786131-27786464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
14, 83
               

               
Conread position:
               
84-351
               

               
Cow position:
               
chr16:16015034-16014762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
12, 127
               

               
Conread position:
               
103-402
               

               
Cow position:
               
chr16:49279553-49279859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
136, 221
               

               
Conread position:
               
105-412
               

               
Cow position:
               
chr16:11782264-11781961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
6, 27
               

               
Conread position:
               
109-280
               

               
Cow position:
               
chr16:32739340-32739511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
156, 6
               

               
Conread position:
               
126-351
               

               
Cow position:
               
chr16:25342105-25342337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
112, 184
               

               
Conread position:
               
126-403
               

               
Cow position:
               
chr16:15476977-15477267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
112, 184
               

               
Conread position:
               
126-403
               

               
Cow position:
               
chr16:25441763-25442057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
1-249
               

               
Cow position:
               
chr17:30673154-30672911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
21, 39
               

               
Conread position:
               
1-345
               

               
Cow position:
               
chr17:15436371-15436726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
95, 58
               

               
Conread position:
               
2-238
               

               
Cow position:
               
chr17:33831100-33831339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
94, 53
               

               
Conread position:
               
2-264
               

               
Cow position:
               
chr17:11087142-11086875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
10, 15
               

               
Conread position:
               
2-403
               

               
Cow position:
               
chr17:19268249-19267830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
93, 57
               

               
Conread position:
               
2-454
               

               
Cow position:
               
chr17:24029424-24028942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
105, 57
               

               
Conread position:
               
3-351
               

               
Cow position:
               
chr17:32297546-32297190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
97, 58
               

               
Conread position:
               
3-352
               

               
Cow position:
               
chr17:14910884-14910530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
91, 29
               

               
Conread position:
               
14-202
               

               
Cow position:
               
chr17:31951423-31951228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
38, 69
               

               
Conread position:
               
110-255
               

               
Cow position:
               
chr17:4653752-4653606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
5, 89
               

               
Conread position:
               
131-402
               

               
Cow position:
               
chr17:6069267-6069551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
109, 179
               

               
Conread position:
               
1-248
               

               
Cow position:
               
chr18:44748903-44749150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
11, 35
               

               
Conread position:
               
1-257
               

               
Cow position:
               
chr18:37557745-37557999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
99, 49
               

               
Conread position:
               
1-401
               

               
Cow position:
               
chr18:8595384-8594986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
237, 19
               

               
Conread position:
               
1-421
               

               
Cow position:
               
chr18:20693371-20692941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
95, 48
               

               
Conread position:
               
1-433
               

               
Cow position:
               
chr18:20800362-20799928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
15, 57
               

               
Conread position:
               
2-264
               

               
Cow position:
               
chr18:16175825-16175560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
107, 47
               

               
Conread position:
               
2-264
               

               
Cow position:
               
chr18:37506750-37507017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
94, 57
               

               
Conread position:
               
2-401
               

               
Cow position:
               
chr18:25961630-25961213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
105, 42
               

               
Conread position:
               
2-403
               

               
Cow position:
               
chr18:27837519-27837102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
26, 58
               

               
Conread position:
               
3-257
               

               
Cow position:
               
chr18:17197620-17197363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
23, 17
               

               
Conread position:
               
3-265
               

               
Cow position:
               
chr18:37527408-37527660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
230, 54
               

               
Conread position:
               
9-401
               

               
Cow position:
               
chr18:14131190-14131599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
102, 7
               

               
Conread position:
               
67-402
               

               
Cow position:
               
chr18:19470628-19470978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
23, 68
               

               
Conread position:
               
70-403
               

               
Cow position:
               
chr18:23449007-23448656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
33, 245
               

               
Conread position:
               
75-351
               

               
Cow position:
               
chr18:35800145-35799868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
18, 55
               

               
Conread position:
               
85-284
               

               
Cow position:
               
chr18:37338356-37338557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
8, 20
               

               
Conread position:
               
108-256
               

               
Cow position:
               
chr18:33142153-33142301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
126-264
               

               
Cow position:
               
chr18:27988108-27988247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
126-403
               

               
Cow position:
               
chr18:23798566-23798857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
112, 192
               

               
Conread position:
               
126-403
               

               
Cow position:
               
chr18:28972967-28972677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
107, 184
               

               
Conread position:
               
126-403
               

               
Cow position:
               
chr18:32653134-32653426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
112, 184
               

               
Conread position:
               
126-403
               

               
Cow position:
               
chr18:52651829-52652117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
112, 184
               

               
Conread position:
               
1-397
               

               
Cow position:
               
chr19:30747035-30747441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 35
               

               
Conread position:
               
2-222
               

               
Cow position:
               
chr19:38436995-38437214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
87, 55
               

               
Conread position:
               
2-260
               

               
Cow position:
               
chr19:3138720-3138987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
53, 173
               

               
Conread position:
               
2-402
               

               
Cow position:
               
chr19:11952105-11952522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
50, 65
               

               
Conread position:
               
2-421
               

               
Cow position:
               
chr19:40851646-40851220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
10, 15
               

               
Conread position:
               
2-502
               

               
Cow position:
               
chr19:39184745-39184253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
88, 60
               

               
Conread position:
               
83-401
               

               
Cow position:
               
chr19:5162829-5162504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
17, 186
               

               
Conread position:
               
126-264
               

               
Cow position:
               
chr19:7489266-7489405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
126-416
               

               
Cow position:
               
chr19:39391430-39391734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
112, 184
               

               
Conread position:
               
1-402
               

               
Cow position:
               
chr20:32215788-32216191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
153, 48
               

               
Conread position:
               
2-264
               

               
Cow position:
               
chr20:15292758-15293022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
94, 21
               

               
Conread position:
               
2-264
               

               
Cow position:
               
chr20:21915072-21915338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
105, 57
               

               
Conread position:
               
2-403
               

               
Cow position:
               
chr20:12569275-12569693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
86, 57
               

               
Conread position:
               
2-404
               

               
Cow position:
               
chr20:28161572-28161995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
10, 15
               

               
Conread position:
               
3-351
               

               
Cow position:
               
chr20:2399388-2399745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
22, 28
               

               
Conread position:
               
5-249
               

               
Cow position:
               
chr20:9127971-9127722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
51, 94
               

               
Conread position:
               
22-255
               

               
Cow position:
               
chr20:37442523-37442289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
81, 40
               

               
Conread position:
               
1-198
               

               
Cow position:
               
chr21:18169438-18169242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
95, 58
               

               
Conread position:
               
1-351
               

               
Cow position:
               
chr21:37590519-37590165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
99, 55
               

               
Conread position:
               
2-260
               

               
Cow position:
               
chr21:1689294-1689030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
2-264
               

               
Cow position:
               
chr21:146796-147063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
105, 57
               

               
Conread position:
               
2-264
               

               
Cow position:
               
chr21:4077703-4077967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
100, 34
               

               
Conread position:
               
2-264
               

               
Cow position:
               
chr21:5840397-5840130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
105, 57
               

               
Conread position:
               
2-403
               

               
Cow position:
               
chr21:1192627-1193039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
10, 15
               

               
Conread position:
               
2-403
               

               
Cow position:
               
chr21:35144629-35145043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
111, 57
               

               
Conread position:
               
3-194
               

               
Cow position:
               
chr21:4275301-4275109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
23, 29
               

               
Conread position:
               
3-403
               

               
Cow position:
               
chr21:30316143-30316556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
93, 18
               

               
Conread position:
               
5-420
               

               
Cow position:
               
chr21:42962535-42962130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
235, 22
               

               
Conread position:
               
20-255
               

               
Cow position:
               
chr21:45114984-45115223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
76, 37
               

               
Conread position:
               
30-430
               

               
Cow position:
               
chr21:4404649-4405055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
65, 27
               

               
Conread position:
               
55-401
               

               
Cow position:
               
chr21:45490976-45491333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
185, 17
               

               
Conread position:
               
75-351
               

               
Cow position:
               
chr21:38806368-38806095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
79, 39
               

               
Conread position:
               
101-425
               

               
Cow position:
               
chr21:16693198-16693532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
14, 209
               

               
Conread position:
               
126-403
               

               
Cow position:
               
chr21:26402493-26402206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
112, 184
               

               
Conread position:
               
1-260
               

               
Cow position:
               
chr22:22304983-22305241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
26, 30
               

               
Conread position:
               
2-264
               

               
Cow position:
               
chr22:31334340-31334074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
94, 57
               

               
Conread position:
               
2-403
               

               
Cow position:
               
chr22:6332414-6332823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
235, 60
               

               
Conread position:
               
2-403
               

               
Cow position:
               
chr22:21590032-21590451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
10, 15
               

               
Conread position:
               
2-403
               

               
Cow position:
               
chr22:34169033-34169452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
105, 57
               

               
Conread position:
               
2-417
               

               
Cow position:
               
chr22:37292975-37292537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
10, 15
               

               
Conread position:
               
2-502
               

               
Cow position:
               
chr22:19142995-19142502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
105, 57
               

               
Conread position:
               
3-402
               

               
Cow position:
               
chr22:23943445-23943027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
93, 54
               

               
Conread position:
               
3-454
               

               
Cow position:
               
chr22:3763621-3763179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
93, 33
               

               
Conread position:
               
6-260
               

               
Cow position:
               
chr22:40721175-40721435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
33, 51
               

               
Conread position:
               
14-264
               

               
Cow position:
               
chr22:39919608-39919852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
226, 33
               

               
Conread position:
               
37-403
               

               
Cow position:
               
chr22:34162505-34162132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
196, 22
               

               
Conread position:
               
42-244
               

               
Cow position:
               
chr22:33453675-33453480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
196, 15
               

               
Conread position:
               
60-403
               

               
Cow position:
               
chr22:6876531-6876177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
39, 61
               

               
Conread position:
               
109-401
               

               
Cow position:
               
chr22:14659842-14659545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
175, 124
               

               
Conread position:
               
126-403
               

               
Cow position:
               
chr22:39468698-39468405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
114, 184
               

               
Conread position:
               
128-351
               

               
Cow position:
               
chr22:31314171-31314400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
110, 182
               

               
Conread position:
               
133-253
               

               
Cow position:
               
chr22:1281901-1281781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-349
               

               
Cow position:
               
chr23:7711920-7712267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
20, 56
               

               
Conread position:
               
2-260
               

               
Cow position:
               
chr23:16614741-16614478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
10, 15
               

               
Conread position:
               
2-264
               

               
Cow position:
               
chr23:15219209-15218941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
91, 57
               

               
Conread position:
               
2-264
               

               
Cow position:
               
chr23:20155524-20155257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
94, 57
               

               
Conread position:
               
2-403
               

               
Cow position:
               
chr23:2026384-2025968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
105, 57
               

               
Conread position:
               
2-403
               

               
Cow position:
               
chr23:36030678-36030266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
10, 15
               

               
Conread position:
               
3-257
               

               
Cow position:
               
chr23:9265216-9264967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
170, 20
               

               
Conread position:
               
15-255
               

               
Cow position:
               
chr23:5903248-5903012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
81, 42
               

               
Conread position:
               
16-263
               

               
Cow position:
               
chr23:35337349-35337097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
115, 20
               

               
Conread position:
               
70-430
               

               
Cow position:
               
chr23:8299608-8299227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
35, 54
               

               
Conread position:
               
126-434
               

               
Cow position:
               
chr23:2758710-2759034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
112, 184
               

               
Conread position:
               
126-454
               

               
Cow position:
               
chr23:1956725-1957060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
112, 106
               

               
Conread position:
               
1-254
               

               
Cow position:
               
chr24:15248578-15248327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
113, 24
               

               
Conread position:
               
2-435
               

               
Cow position:
               
chr24:6406810-6407268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
105, 57
               

               
Conread position:
               
3-231
               

               
Cow position:
               
chr24:39448860-39448628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
93, 54
               

               
Conread position:
               
3-351
               

               
Cow position:
               
chr24:11939137-11938786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
114, 69
               

               
Conread position:
               
7-254
               

               
Cow position:
               
chr24:16535474-16535228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
82, 29
               

               
Conread position:
               
9-253
               

               
Cow position:
               
chr24:29182938-29183187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
95, 47
               

               
Conread position:
               
70-255
               

               
Cow position:
               
chr24:3226891-3226703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
9, 167
               

               
Conread position:
               
75-256
               

               
Cow position:
               
chr24:52608-52421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
78-351
               

               
Cow position:
               
chr24:25481791-25482062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
67, 55
               

               
Conread position:
               
97-260
               

               
Cow position:
               
chr24:18127619-18127454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
140, 0
               

               
Conread position:
               
99-345
               

               
Cow position:
               
chr24:28032702-28032451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
138, 7
               

               
Conread position:
               
99-464
               

               
Cow position:
               
chr24:16855866-16856234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
141, 54
               

               
Conread position:
               
114-403
               

               
Cow position:
               
chr24:31806249-31806541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
125, 39
               

               
Conread position:
               
1-255
               

               
Cow position:
               
chr25:27021844-27021585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
106, 58
               

               
Conread position:
               
2-264
               

               
Cow position:
               
chr25:22148281-22148548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
105, 57
               

               
Conread position:
               
2-403
               

               
Cow position:
               
chr25:25507445-25507862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
105, 57
               

               
Conread position:
               
3-237
               

               
Cow position:
               
chr25:33050264-33050035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
97, 33
               

               
Conread position:
               
3-285
               

               
Cow position:
               
chr25:16432635-16432351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
93, 45
               

               
Conread position:
               
14-353
               

               
Cow position:
               
chr25:26292233-26292580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
35, 44
               

               
Conread position:
               
71-260
               

               
Cow position:
               
chr25:24947294-24947102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
29, 23
               

               
Conread position:
               
116-294
               

               
Cow position:
               
chr25:32156556-32156369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
126-417
               

               
Cow position:
               
chr25:24659330-24659039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
112, 57
               

               
Conread position:
               
1-402
               

               
Cow position:
               
chr26:32685032-32684622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
99, 35
               

               
Conread position:
               
1-431
               

               
Cow position:
               
chr26:8614455-8614023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
109, 55
               

               
Conread position:
               
2-351
               

               
Cow position:
               
chr26:6848684-6848324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
105, 57
               

               
Conread position:
               
2-403
               

               
Cow position:
               
chr26:19350753-19350343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
96, 47
               

               
Conread position:
               
3-402
               

               
Cow position:
               
chr26:16857344-16856942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
93, 53
               

               
Conread position:
               
23-259
               

               
Cow position:
               
chr26:26270529-26270771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
73, 33
               

               
Conread position:
               
1-401
               

               
Cow position:
               
chr27:24994954-24994546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
101, 46
               

               
Conread position:
               
2-351
               

               
Cow position:
               
chr27:15636651-15636291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
94, 57
               

               
Conread position:
               
2-403
               

               
Cow position:
               
chr27:1210052-1210470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
100, 60
               

               
Conread position:
               
2-418
               

               
Cow position:
               
chr27:15036891-15036464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
105, 57
               

               
Conread position:
               
58-255
               

               
Cow position:
               
chr27:16043015-16042811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
99-343
               

               
Cow position:
               
chr27:17601573-17601324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
21, 82
               

               
Conread position:
               
1-403
               

               
Cow position:
               
chr28:32791634-32791218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
48, 62
               

               
Conread position:
               
1-430
               

               
Cow position:
               
chr28:24540831-24541277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
26, 54
               

               
Conread position:
               
2-244
               

               
Cow position:
               
chr28:8379798-8380044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
105, 57
               

               
Conread position:
               
2-264
               

               
Cow position:
               
chr28:18519704-18519441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
10, 15
               

               
Conread position:
               
2-403
               

               
Cow position:
               
chr28:1814122-1813702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
105, 57
               

               
Conread position:
               
2-403
               

               
Cow position:
               
chr28:29820747-29821156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
236, 60
               

               
Conread position:
               
2-421
               

               
Cow position:
               
chr28:783418-783835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
111, 57
               

               
Conread position:
               
2-502
               

               
Cow position:
               
chr28:7002737-7003233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
10, 15
               

               
Conread position:
               
3-255
               

               
Cow position:
               
chr28:12677777-12677529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
47, 31
               

               
Conread position:
               
3-255
               

               
Cow position:
               
chr28:21944305-21944048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
76, 54
               

               
Conread position:
               
75-403
               

               
Cow position:
               
chr28:29843389-29843051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
11, 246
               

               
Conread position:
               
80-431
               

               
Cow position:
               
chr28:33959957-33959591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
20, 82
               

               
Conread position:
               
85-258
               

               
Cow position:
               
chr28:2075667-2075843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
9, 148
               

               
Conread position:
               
99-403
               

               
Cow position:
               
chr28:8356267-8356578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
150, 52
               

               
Conread position:
               
100-402
               

               
Cow position:
               
chr28:30560693-30561012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
73, 226
               

               
Conread position:
               
128-403
               

               
Cow position:
               
chr28:22260280-22259991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
110, 175
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr29:21291299-21291537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
10, 23
               

               
Conread position:
               
2-260
               

               
Cow position:
               
chr29:45460428-45460693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
105, 57
               

               
Conread position:
               
2-264
               

               
Cow position:
               
chr29:2690613-2690885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
91, 57
               

               
Conread position:
               
2-264
               

               
Cow position:
               
chr29:7430511-7430245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
88, 47
               

               
Conread position:
               
2-264
               

               
Cow position:
               
chr29:14210861-14210595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
105, 47
               

               
Conread position:
               
2-502
               

               
Cow position:
               
chr29:32540801-32541297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
105, 57
               

               
Conread position:
               
3-244
               

               
Cow position:
               
chr29:8715114-8714869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
93, 53
               

               
Conread position:
               
63-347
               

               
Cow position:
               
chr29:29594321-29594038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
52, 33
               

               
Conread position:
               
75-402
               

               
Cow position:
               
chr29:13856279-13855937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
25, 218
               

               
Conread position:
               
82-260
               

               
Cow position:
               
chr29:16731343-16731159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
108-264
               

               
Cow position:
               
chr29:21519647-21519490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
129, 0
               

               
Conread position:
               
111-405
               

               
Cow position:
               
chr29:28811229-28811516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
129, 197
               

               
Conread position:
               
119-257
               

               
Cow position:
               
chr29:5981886-5981748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
120, 7
               

               
Conread position:
               
144-406
               

               
Cow position:
               
chr29:39368727-39368989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
89, 66
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr9:24923871-24924109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
236, 106
               

               
Conread position:
               
1-260
               

               
Cow position:
               
chr9:3738638-3738899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
106, 53
               

               
Conread position:
               
2-205
               

               
Cow position:
               
chr9:23816582-23816789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
94, 54
               

               
Conread position:
               
2-264
               

               
Cow position:
               
chr9:42569499-42569764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
107, 57
               

               
Conread position:
               
2-401
               

               
Cow position:
               
chr9:22191888-22192295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
49, 32
               

               
Conread position:
               
2-403
               

               
Cow position:
               
chr9:6249894-6250311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
105, 57
               

               
Conread position:
               
2-403
               

               
Cow position:
               
chr9:17305382-17304964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
10, 15
               

               
Conread position:
               
2-403
               

               
Cow position:
               
chr9:22654167-22654588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
8, 15
               

               
Conread position:
               
2-403
               

               
Cow position:
               
chr9:59536691-59537110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
105, 60
               

               
Conread position:
               
2-421
               

               
Cow position:
               
chr9:29027614-29027181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
105, 57
               

               
Conread position:
               
2-454
               

               
Cow position:
               
chr9:60277421-60276952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
105, 60
               

               
Conread position:
               
2-480
               

               
Cow position:
               
chr9:5004569-5005059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
105, 60
               

               
Conread position:
               
44-421
               

               
Cow position:
               
chr9:59482155-59481766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
52, 16
               

               
Conread position:
               
99-255
               

               
Cow position:
               
chr9:44453446-44453597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
17, 26
               

               
Conread position:
               
109-351
               

               
Cow position:
               
chr9:4978808-4979053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
130, 197
               

               
Conread position:
               
217-399
               

               
Cow position:
               
chr9:24924113-24924297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
52, 92
               

               
Conread position:
               
1-196
               

               
Cow position:
               
chrX:25173328-25173526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
95, 56
               

               
Conread position:
               
1-220
               

               
Cow position:
               
chrX:3014918-3015134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
99, 56
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chrX:983161-983429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
95, 58
               

               
Conread position:
               
1-351
               

               
Cow position:
               
chrX:39563435-39563074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
106, 33
               

               
Conread position:
               
1-417
               

               
Cow position:
               
chrX:27390683-27390256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
99, 56
               

               
Conread position:
               
1-420
               

               
Cow position:
               
chrX:16276148-16276583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
108, 58
               

               
Conread position:
               
1-420
               

               
Cow position:
               
chrX:24562871-24562443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
95, 24
               

               
Conread position:
               
2-254
               

               
Cow position:
               
chrX:31198950-31199207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
105, 57
               

               
Conread position:
               
2-264
               

               
Cow position:
               
chrX:13412632-13412365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
91, 57
               

               
Conread position:
               
2-284
               

               
Cow position:
               
chrX:20794382-20794093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
94, 43
               

               
Conread position:
               
2-351
               

               
Cow position:
               
chrX:12669249-12668891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
94, 57
               

               
Conread position:
               
2-402
               

               
Cow position:
               
chrX:26528478-26528893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
105, 57
               

               
Conread position:
               
2-434
               

               
Cow position:
               
chrX:23040622-23040176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
10, 15
               

               
Conread position:
               
3-253
               

               
Cow position:
               
chrX:20506040-20506294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
93, 54
               

               
Conread position:
               
3-352
               

               
Cow position:
               
chrX:17727099-17727457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
87, 52
               

               
Conread position:
               
3-397
               

               
Cow position:
               
chrX:21971335-21971731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
93, 53
               

               
Conread position:
               
6-257
               

               
Cow position:
               
chrX:3625819-3626071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
112, 43
               

               
Conread position:
               
7-253
               

               
Cow position:
               
chrX:13053511-13053762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
88, 55
               

               
Conread position:
               
20-293
               

               
Cow position:
               
chrX:10991078-10991349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
89, 37
               

               
Conread position:
               
42-351
               

               
Cow position:
               
chrX:2264943-2264637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
54, 15
               

               
Conread position:
               
70-221
               

               
Cow position:
               
chrX:23933255-23933104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
75-403
               

               
Cow position:
               
chrX:21732190-21731844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
15, 78
               

               
Conread position:
               
78-403
               

               
Cow position:
               
chrX:24523341-24523664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
160, 59
               

               
Conread position:
               
99-277
               

               
Cow position:
               
chrX:39057673-39057852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
139, 123
               

               
Conread position:
               
99-281
               

               
Cow position:
               
chrX:18767771-18767959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
18, 181
               

               
Conread position:
               
108-241
               

               
Cow position:
               
chrX:12066646-12066780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
115-429
               

               
Cow position:
               
chrX:8940148-8939825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
124, 50
               

               
Conread position:
               
126-401
               

               
Cow position:
               
chrX:23389889-23389599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
112, 184
               

               
Conread position:
               
126-403
               

               
Cow position:
               
chrX:23277654-23277945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
112, 184