Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8065D22.3 |
| Conread position: | 820-1488 |
| Cow position: | chr1:57803105-57803763 (view UCSC Genome Browser custom track) |
| Alignm length: | 669 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 545, 0 |
| Conread position: | 1065-1241 |
| Cow position: | chr1:85519564-85519383 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 149 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 1269-1488 |
| Cow position: | chr1:85519381-85519173 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 176 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 71, 24 |
| Conread position: | 863-943 |
| Cow position: | chr10:20414268-20414188 (view UCSC Genome Browser custom track) |
| Alignm length: | 81 |
| Alignm identity: | 74 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 945-1062 |
| Cow position: | chr10:20413990-20413869 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 45, 5 |
| Conread position: | 52-624 |
| Cow position: | chr11:39225434-39226002 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 518 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 551-1062 |
| Cow position: | chr11:39225956-39226471 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 14 |
| Conread position: | 1065-1240 |
| Cow position: | chr11:40598265-40598089 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 46, 18 |
| Conread position: | 1269-1488 |
| Cow position: | chr11:40598086-40597875 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 172 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 1065-1241 |
| Cow position: | chr13:26292519-26292700 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 1065-1241 |
| Cow position: | chr13:51091619-51091800 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 1269-1488 |
| Cow position: | chr13:26292701-26292912 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 170 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 1065-1227 |
| Cow position: | chr14:33613997-33614164 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 1269-1488 |
| Cow position: | chr14:33614320-33614530 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 68, 81 |
| Conread position: | 1065-1241 |
| Cow position: | chr15:41965457-41965638 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 1269-1488 |
| Cow position: | chr15:41965640-41965846 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 71, 24 |
| Conread position: | 135-1062 |
| Cow position: | chr16:44596817-44597741 (view UCSC Genome Browser custom track) |
| Alignm length: | 934 |
| Alignm identity: | 836 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 460, 288 |
| Conread position: | 368-501 |
| Cow position: | chr16:50051965-50051832 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 128 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 494-1062 |
| Cow position: | chr16:50051964-50052535 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 508 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 350, 344 |
| Conread position: | 941-1062 |
| Cow position: | chr18:2437902-2437776 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 685-1062 |
| Cow position: | chr19:2116487-2116103 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 304, 56 |
| Conread position: | 1065-1241 |
| Cow position: | chr19:5430149-5430328 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 46, 94 |
| Conread position: | 1269-1488 |
| Cow position: | chr19:5430330-5430541 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 170 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 94-199 |
| Cow position: | chr2:76097642-76097537 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 100 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 201-368 |
| Cow position: | chr2:76093072-76092903 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 105, 162 |
| Conread position: | 301-417 |
| Cow position: | chr2:76092852-76092736 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 112 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 417-491 |
| Cow position: | chr2:76085130-76085056 (view UCSC Genome Browser custom track) |
| Alignm length: | 75 |
| Alignm identity: | 70 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 490-608 |
| Cow position: | chr2:76084573-76084455 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 614-718 |
| Cow position: | chr2:76078800-76078696 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 714-833 |
| Cow position: | chr2:76078534-76078414 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 100 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 812-1060 |
| Cow position: | chr2:76076307-76076055 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 0 |
| Conread position: | 1065-1237 |
| Cow position: | chr2:76075816-76075639 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 1065-1237 |
| Cow position: | chr2:85221465-85221290 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 46, 98 |
| Conread position: | 1269-1488 |
| Cow position: | chr2:76075633-76075423 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 170 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1269-1488 |
| Cow position: | chr2:85221284-85221076 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1065-1241 |
| Cow position: | chr20:7797739-7797558 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 1269-1488 |
| Cow position: | chr20:7797556-7797346 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 177 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 71, 24 |
| Conread position: | 930-1062 |
| Cow position: | chr21:33085043-33085181 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 1065-1241 |
| Cow position: | chr22:43891070-43890889 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 1269-1488 |
| Cow position: | chr22:43890887-43890677 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 170 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 88-1062 |
| Cow position: | chr24:7784616-7783638 (view UCSC Genome Browser custom track) |
| Alignm length: | 980 |
| Alignm identity: | 889 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 901, 438 |
| Conread position: | 10-829 |
| Cow position: | chr26:35431348-35432166 (view UCSC Genome Browser custom track) |
| Alignm length: | 820 |
| Alignm identity: | 740 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 10-1062 |
| Cow position: | chr26:35435728-35436784 (view UCSC Genome Browser custom track) |
| Alignm length: | 1058 |
| Alignm identity: | 953 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 979, 31 |
| Conread position: | 815-1062 |
| Cow position: | chr26:35432274-35432526 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 0 |
| Conread position: | 1065-1237 |
| Cow position: | chr28:32001208-32001385 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 1269-1488 |
| Cow position: | chr28:32001391-32001601 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 725-1062 |
| Cow position: | chr3:76303312-76303653 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 264, 212 |
| Conread position: | 1065-1241 |
| Cow position: | chr3:65256690-65256509 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 1269-1488 |
| Cow position: | chr3:65256507-65256295 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 26, 96 |
| Conread position: | 1269-1488 |
| Cow position: | chr4:28296801-28296591 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 763-1060 |
| Cow position: | chr5:20665-20969 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 0 |
| Conread position: | 964-1062 |
| Cow position: | chr7:24027578-24027475 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 90 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 626-867 |
| Cow position: | chr9:25615937-25616181 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 856-1038 |
| Cow position: | chr9:25616347-25616518 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 133, 94 |
| Conread position: | 1065-1237 |
| Cow position: | chr9:40373343-40373166 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 1269-1488 |
| Cow position: | chr9:40373160-40372950 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 910-1062 |
| Cow position: | chrX:28179300-28179143 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 1068-1241 |
| Cow position: | chrX:36095981-36096159 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 1269-1428 |
| Cow position: | chrX:36096161-36096318 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 95, 0 |