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Cow genome map

           
Conread name:
           
Ss1.1-Pig4-TMW8065J01.3
        

               
Conread position:
               
11-629
               

               
Cow position:
               
chr1:31364615-31365233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
643
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
10, 90
               

               
Conread position:
               
12-714
               

               
Cow position:
               
chr1:13574060-13573371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
716
               

               
Alignm identity:
               
450
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
9, 48
               

               
Conread position:
               
18-714
               

               
Cow position:
               
chr1:95406932-95406263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
709
               

               
Alignm identity:
               
456
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 17
               

               
Conread position:
               
20-669
               

               
Cow position:
               
chr1:62243180-62243813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
665
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
236, 80
               

               
Conread position:
               
32-510
               

               
Cow position:
               
chr1:68336518-68336987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
88, 43
               

               
Conread position:
               
116-592
               

               
Cow position:
               
chr1:57972312-57972801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
25, 45
               

               
Conread position:
               
125-587
               

               
Cow position:
               
chr1:52743157-52743622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
93, 13
               

               
Conread position:
               
192-697
               

               
Cow position:
               
chr1:35034836-35034337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
130, 12
               

               
Conread position:
               
200-510
               

               
Cow position:
               
chr1:55128111-55127791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
128, 33
               

               
Conread position:
               
204-592
               

               
Cow position:
               
chr1:72919824-72920193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
81, 21
               

               
Conread position:
               
205-517
               

               
Cow position:
               
chr1:1537649-1537966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
42, 82
               

               
Conread position:
               
205-684
               

               
Cow position:
               
chr1:42078935-42078457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
151, 28
               

               
Conread position:
               
208-592
               

               
Cow position:
               
chr1:28357722-28358117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
123, 31
               

               
Conread position:
               
213-636
               

               
Cow position:
               
chr1:70789635-70789227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
72, 23
               

               
Conread position:
               
231-609
               

               
Cow position:
               
chr1:55155718-55156114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
54, 62
               

               
Conread position:
               
231-670
               

               
Cow position:
               
chr1:39701929-39701466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
21, 53
               

               
Conread position:
               
237-656
               

               
Cow position:
               
chr1:5477554-5477121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
91, 10
               

               
Conread position:
               
240-669
               

               
Cow position:
               
chr1:9560796-9560355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
75, 7
               

               
Conread position:
               
242-686
               

               
Cow position:
               
chr1:10013664-10014113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
80, 5
               

               
Conread position:
               
255-731
               

               
Cow position:
               
chr1:88212555-88213027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
30, 37
               

               
Conread position:
               
263-669
               

               
Cow position:
               
chr1:22843897-22843468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
27, 19
               

               
Conread position:
               
396-669
               

               
Cow position:
               
chr1:30539234-30539513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
72, 35
               

               
Conread position:
               
401-669
               

               
Cow position:
               
chr1:21691135-21691408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
114, 30
               

               
Conread position:
               
432-698
               

               
Cow position:
               
chr1:100188479-100188209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
87, 144
               

               
Conread position:
               
1-507
               

               
Cow position:
               
chr10:17196881-17197353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
7, 49
               

               
Conread position:
               
2-579
               

               
Cow position:
               
chr10:11822264-11821693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
591
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
8, 164
               

               
Conread position:
               
19-663
               

               
Cow position:
               
chr10:6169993-6169363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
669
               

               
Alignm identity:
               
428
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
247, 39
               

               
Conread position:
               
35-609
               

               
Cow position:
               
chr10:57502287-57501732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
584
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
250, 52
               

               
Conread position:
               
79-685
               

               
Cow position:
               
chr10:32702178-32701562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
634
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
88, 21
               

               
Conread position:
               
189-597
               

               
Cow position:
               
chr10:10719854-10720261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
14, 39
               

               
Conread position:
               
201-647
               

               
Cow position:
               
chr10:50132747-50133196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
84, 35
               

               
Conread position:
               
201-682
               

               
Cow position:
               
chr10:46494575-46495060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
89, 38
               

               
Conread position:
               
209-712
               

               
Cow position:
               
chr10:34683601-34683103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
69, 27
               

               
Conread position:
               
213-714
               

               
Cow position:
               
chr10:56967523-56967047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
302, 12
               

               
Conread position:
               
233-584
               

               
Cow position:
               
chr10:21481235-21480872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
28, 62
               

               
Conread position:
               
233-669
               

               
Cow position:
               
chr10:30578001-30577571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
283, 14
               

               
Conread position:
               
234-696
               

               
Cow position:
               
chr10:28148902-28149355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
167, 13
               

               
Conread position:
               
235-517
               

               
Cow position:
               
chr10:22839858-22840147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
50, 10
               

               
Conread position:
               
235-607
               

               
Cow position:
               
chr10:47965644-47966004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
280, 12
               

               
Conread position:
               
235-611
               

               
Cow position:
               
chr10:58096729-58097108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
98, 12
               

               
Conread position:
               
247-694
               

               
Cow position:
               
chr10:6662330-6662773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
38, 45
               

               
Conread position:
               
263-590
               

               
Cow position:
               
chr10:13220158-13220498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
22, 30
               

               
Conread position:
               
321-714
               

               
Cow position:
               
chr10:23138499-23138110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
47, 78
               

               
Conread position:
               
370-714
               

               
Cow position:
               
chr10:49652697-49653059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
104, 61
               

               
Conread position:
               
429-696
               

               
Cow position:
               
chr10:15746924-15747196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
88, 33
               

               
Conread position:
               
2-584
               

               
Cow position:
               
chr11:24394469-24393889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
602
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
16, 74
               

               
Conread position:
               
3-388
               

               
Cow position:
               
chr11:72588507-72588140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
20, 29
               

               
Conread position:
               
6-582
               

               
Cow position:
               
chr11:44252952-44252372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
15, 45
               

               
Conread position:
               
9-578
               

               
Cow position:
               
chr11:72309891-72310455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
590
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
12, 92
               

               
Conread position:
               
9-669
               

               
Cow position:
               
chr11:12357264-12357929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
686
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
12, 92
               

               
Conread position:
               
19-609
               

               
Cow position:
               
chr11:59038649-59039217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
608
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
303, 55
               

               
Conread position:
               
20-581
               

               
Cow position:
               
chr11:4269266-4269826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
582
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
265, 80
               

               
Conread position:
               
58-669
               

               
Cow position:
               
chr11:53430945-53431571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
642
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
21, 32
               

               
Conread position:
               
76-669
               

               
Cow position:
               
chr11:43513537-43514145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
618
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
91, 54
               

               
Conread position:
               
87-672
               

               
Cow position:
               
chr11:9762678-9763264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
604
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
26, 12
               

               
Conread position:
               
127-627
               

               
Cow position:
               
chr11:49840897-49840386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
525
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
75, 31
               

               
Conread position:
               
197-592
               

               
Cow position:
               
chr11:75554020-75554414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
59, 99
               

               
Conread position:
               
201-504
               

               
Cow position:
               
chr11:15943378-15943686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
121, 20
               

               
Conread position:
               
201-592
               

               
Cow position:
               
chr11:20575418-20575815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
106, 25
               

               
Conread position:
               
201-608
               

               
Cow position:
               
chr11:32633640-32634035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
148, 23
               

               
Conread position:
               
201-717
               

               
Cow position:
               
chr11:74986875-74986368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
168, 24
               

               
Conread position:
               
203-669
               

               
Cow position:
               
chr11:31258758-31258292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
121, 33
               

               
Conread position:
               
210-480
               

               
Cow position:
               
chr11:35335363-35335633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
161, 29
               

               
Conread position:
               
228-670
               

               
Cow position:
               
chr11:54484473-54484926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
52, 11
               

               
Conread position:
               
230-517
               

               
Cow position:
               
chr11:84256526-84256236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
55, 18
               

               
Conread position:
               
232-716
               

               
Cow position:
               
chr11:23126963-23127457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
53, 61
               

               
Conread position:
               
237-586
               

               
Cow position:
               
chr11:36324330-36323982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
85, 57
               

               
Conread position:
               
237-683
               

               
Cow position:
               
chr11:7290632-7291071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
9, 44
               

               
Conread position:
               
258-669
               

               
Cow position:
               
chr11:919863-920266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
259, 36
               

               
Conread position:
               
263-507
               

               
Cow position:
               
chr11:23479451-23479199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
65, 31
               

               
Conread position:
               
264-592
               

               
Cow position:
               
chr11:38834526-38834870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
68, 29
               

               
Conread position:
               
264-682
               

               
Cow position:
               
chr11:28053706-28054136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
21, 29
               

               
Conread position:
               
363-669
               

               
Cow position:
               
chr11:73462487-73462794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
152, 68
               

               
Conread position:
               
387-672
               

               
Cow position:
               
chr11:15695769-15696059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
129, 44
               

               
Conread position:
               
437-684
               

               
Cow position:
               
chr11:84515558-84515812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
81, 25
               

               
Conread position:
               
5-671
               

               
Cow position:
               
chr12:27513773-27513112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
688
               

               
Alignm identity:
               
427
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
16, 55
               

               
Conread position:
               
9-627
               

               
Cow position:
               
chr12:11955506-11956114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
638
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
14, 50
               

               
Conread position:
               
210-572
               

               
Cow position:
               
chr12:11510763-11510403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
145, 26
               

               
Conread position:
               
237-670
               

               
Cow position:
               
chr12:10681244-10681680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
49, 12
               

               
Conread position:
               
323-672
               

               
Cow position:
               
chr12:5551793-5552140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
44, 72
               

               
Conread position:
               
334-730
               

               
Cow position:
               
chr12:22216178-22216577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
39, 49
               

               
Conread position:
               
397-714
               

               
Cow position:
               
chr12:21290047-21289723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
21, 40
               

               
Conread position:
               
9-682
               

               
Cow position:
               
chr13:31611094-31611764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
694
               

               
Alignm identity:
               
428
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
12, 65
               

               
Conread position:
               
20-669
               

               
Cow position:
               
chr13:3653111-3653764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
671
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
265, 80
               

               
Conread position:
               
25-500
               

               
Cow position:
               
chr13:30276122-30276579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
69, 50
               

               
Conread position:
               
200-627
               

               
Cow position:
               
chr13:44652780-44653214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
85, 8
               

               
Conread position:
               
201-669
               

               
Cow position:
               
chr13:20926034-20925557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
57, 24
               

               
Conread position:
               
213-685
               

               
Cow position:
               
chr13:36456161-36456632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
146, 19
               

               
Conread position:
               
233-583
               

               
Cow position:
               
chr13:1592144-1592512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
23, 62
               

               
Conread position:
               
247-580
               

               
Cow position:
               
chr13:6640401-6640062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
38, 42
               

               
Conread position:
               
301-715
               

               
Cow position:
               
chr13:47277081-47276662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
34, 137
               

               
Conread position:
               
376-606
               

               
Cow position:
               
chr13:32155221-32155454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
143, 47
               

               
Conread position:
               
428-709
               

               
Cow position:
               
chr13:60333577-60333290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
91, 11
               

               
Conread position:
               
20-669
               

               
Cow position:
               
chr14:5075030-5074398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
658
               

               
Alignm identity:
               
397
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
306, 45
               

               
Conread position:
               
227-671
               

               
Cow position:
               
chr14:17051485-17051918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
58, 20
               

               
Conread position:
               
233-584
               

               
Cow position:
               
chr14:12742183-12742551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
23, 62
               

               
Conread position:
               
233-713
               

               
Cow position:
               
chr14:16882960-16883450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
99, 60
               

               
Conread position:
               
255-669
               

               
Cow position:
               
chr14:25087217-25087641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
77, 40
               

               
Conread position:
               
321-669
               

               
Cow position:
               
chr14:17686189-17685829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
52, 100
               

               
Conread position:
               
7-510
               

               
Cow position:
               
chr15:48284789-48284289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
16, 106
               

               
Conread position:
               
9-712
               

               
Cow position:
               
chr15:35646591-35647280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
720
               

               
Alignm identity:
               
438
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
12, 31
               

               
Conread position:
               
93-674
               

               
Cow position:
               
chr15:33797508-33798068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
34, 40
               

               
Conread position:
               
201-669
               

               
Cow position:
               
chr15:7849892-7850368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
154, 35
               

               
Conread position:
               
201-732
               

               
Cow position:
               
chr15:16346064-16346589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
548
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
163, 24
               

               
Conread position:
               
202-669
               

               
Cow position:
               
chr15:5207800-5207323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
130, 23
               

               
Conread position:
               
207-586
               

               
Cow position:
               
chr15:38658464-38658086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
18, 33
               

               
Conread position:
               
208-517
               

               
Cow position:
               
chr15:22386644-22386939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
16, 86
               

               
Conread position:
               
210-590
               

               
Cow position:
               
chr15:33494530-33494144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
37, 19
               

               
Conread position:
               
228-581
               

               
Cow position:
               
chr15:13675385-13675024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
104, 19
               

               
Conread position:
               
229-669
               

               
Cow position:
               
chr15:2801062-2801508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
93, 34
               

               
Conread position:
               
233-727
               

               
Cow position:
               
chr15:1318323-1317815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
15, 60
               

               
Conread position:
               
238-730
               

               
Cow position:
               
chr15:21476557-21477053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
75, 10
               

               
Conread position:
               
239-583
               

               
Cow position:
               
chr15:47197186-47196849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
93, 8
               

               
Conread position:
               
245-668
               

               
Cow position:
               
chr15:2140251-2140685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
77, 47
               

               
Conread position:
               
321-668
               

               
Cow position:
               
chr15:2145665-2145311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
50, 116
               

               
Conread position:
               
8-670
               

               
Cow position:
               
chr16:49280181-49279532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
681
               

               
Alignm identity:
               
426
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
23, 51
               

               
Conread position:
               
9-669
               

               
Cow position:
               
chr16:31591170-31591830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
685
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
276, 91
               

               
Conread position:
               
79-714
               

               
Cow position:
               
chr16:16014448-16015080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
649
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
99, 81
               

               
Conread position:
               
196-732
               

               
Cow position:
               
chr16:39354941-39354405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
551
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
175, 43
               

               
Conread position:
               
200-517
               

               
Cow position:
               
chr16:3602549-3602235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
129, 34
               

               
Conread position:
               
230-584
               

               
Cow position:
               
chr16:14665263-14665635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
26, 65
               

               
Conread position:
               
232-606
               

               
Cow position:
               
chr16:8520024-8520400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
31, 17
               

               
Conread position:
               
233-669
               

               
Cow position:
               
chr16:15494047-15493592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
23, 62
               

               
Conread position:
               
233-682
               

               
Cow position:
               
chr16:23535347-23535815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
23, 62
               

               
Conread position:
               
235-730
               

               
Cow position:
               
chr16:33343093-33342616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
50, 21
               

               
Conread position:
               
236-604
               

               
Cow position:
               
chr16:48105596-48105221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
86, 11
               

               
Conread position:
               
240-609
               

               
Cow position:
               
chr16:49472187-49471811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
96, 7
               

               
Conread position:
               
289-671
               

               
Cow position:
               
chr16:23721145-23721545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
313-717
               

               
Cow position:
               
chr16:33341411-33340991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
9, 131
               

               
Conread position:
               
6-714
               

               
Cow position:
               
chr17:6069872-6069168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
728
               

               
Alignm identity:
               
445
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
15, 95
               

               
Conread position:
               
9-669
               

               
Cow position:
               
chr17:6261180-6260518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
685
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
12, 67
               

               
Conread position:
               
10-669
               

               
Cow position:
               
chr17:24028682-24029343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
682
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
11, 23
               

               
Conread position:
               
189-672
               

               
Cow position:
               
chr17:31950886-31951354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
96, 50
               

               
Conread position:
               
201-713
               

               
Cow position:
               
chr17:3326397-3325907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
15, 25
               

               
Conread position:
               
233-592
               

               
Cow position:
               
chr17:7941955-7942317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
52, 60
               

               
Conread position:
               
234-669
               

               
Cow position:
               
chr17:19267713-19268168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
22, 61
               

               
Conread position:
               
242-669
               

               
Cow position:
               
chr17:14910374-14910806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
88, 8
               

               
Conread position:
               
320-714
               

               
Cow position:
               
chr17:28001187-28000804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
191, 50
               

               
Conread position:
               
446-709
               

               
Cow position:
               
chr17:11025626-11025893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
25, 144
               

               
Conread position:
               
9-669
               

               
Cow position:
               
chr18:14131923-14131263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
682
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
12, 92
               

               
Conread position:
               
30-681
               

               
Cow position:
               
chr18:18842114-18842741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
666
               

               
Alignm identity:
               
433
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
44, 59
               

               
Conread position:
               
75-517
               

               
Cow position:
               
chr18:32725931-32726353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
20, 59
               

               
Conread position:
               
75-627
               

               
Cow position:
               
chr18:35313837-35313287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
569
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
16, 58
               

               
Conread position:
               
89-732
               

               
Cow position:
               
chr18:37110491-37111092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
648
               

               
Alignm identity:
               
404
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
92, 10
               

               
Conread position:
               
201-509
               

               
Cow position:
               
chr18:44048054-44047750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
170, 38
               

               
Conread position:
               
201-596
               

               
Cow position:
               
chr18:13357532-13357147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
128, 24
               

               
Conread position:
               
207-510
               

               
Cow position:
               
chr18:6455755-6455454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
56, 13
               

               
Conread position:
               
233-668
               

               
Cow position:
               
chr18:23448558-23448991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
135, 14
               

               
Conread position:
               
249-587
               

               
Cow position:
               
chr18:14421433-14421093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
14, 25
               

               
Conread position:
               
321-669
               

               
Cow position:
               
chr18:42062619-42062270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
47, 60
               

               
Conread position:
               
374-620
               

               
Cow position:
               
chr18:51275872-51276118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
22, 37
               

               
Conread position:
               
441-706
               

               
Cow position:
               
chr18:44749214-44748943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
76, 162
               

               
Conread position:
               
7-665
               

               
Cow position:
               
chr19:29141472-29140844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
670
               

               
Alignm identity:
               
427
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
15, 67
               

               
Conread position:
               
19-709
               

               
Cow position:
               
chr19:11952821-11952143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
713
               

               
Alignm identity:
               
455
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
262, 34
               

               
Conread position:
               
72-674
               

               
Cow position:
               
chr19:30256555-30255956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
622
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
28, 75
               

               
Conread position:
               
93-732
               

               
Cow position:
               
chr19:2639799-2640444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
657
               

               
Alignm identity:
               
541
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 86
               

               
Conread position:
               
201-517
               

               
Cow position:
               
chr19:23359999-23359682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
113, 24
               

               
Conread position:
               
201-668
               

               
Cow position:
               
chr19:19011346-19010891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
37, 76
               

               
Conread position:
               
227-508
               

               
Cow position:
               
chr19:23965595-23965313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
105, 10
               

               
Conread position:
               
233-675
               

               
Cow position:
               
chr19:5162389-5162833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
100, 60
               

               
Conread position:
               
235-666
               

               
Cow position:
               
chr19:5652406-5652838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
50, 64
               

               
Conread position:
               
262-669
               

               
Cow position:
               
chr19:12774409-12773992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
23, 31
               

               
Conread position:
               
263-687
               

               
Cow position:
               
chr19:30747525-30747096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
63, 17
               

               
Conread position:
               
326-592
               

               
Cow position:
               
chr19:24834785-24835068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
26, 198
               

               
Conread position:
               
4-584
               

               
Cow position:
               
chr2:53330745-53330163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
601
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
18, 97
               

               
Conread position:
               
9-669
               

               
Cow position:
               
chr2:8119519-8118857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
686
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
12, 60
               

               
Conread position:
               
22-587
               

               
Cow position:
               
chr2:25716140-25715587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
577
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
72, 52
               

               
Conread position:
               
39-592
               

               
Cow position:
               
chr2:65255274-65255803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
560
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
62, 36
               

               
Conread position:
               
75-518
               

               
Cow position:
               
chr2:63008989-63008542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
76, 14
               

               
Conread position:
               
79-643
               

               
Cow position:
               
chr2:23984514-23985086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
585
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
21, 163
               

               
Conread position:
               
87-468
               

               
Cow position:
               
chr2:46512303-46511928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
54, 11
               

               
Conread position:
               
111-368
               

               
Cow position:
               
chr2:861612-861875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
26, 139
               

               
Conread position:
               
188-507
               

               
Cow position:
               
chr2:33048394-33048723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
14, 21
               

               
Conread position:
               
201-609
               

               
Cow position:
               
chr2:77391572-77391169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
168, 32
               

               
Conread position:
               
201-715
               

               
Cow position:
               
chr2:31899309-31899826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
532
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
84, 24
               

               
Conread position:
               
208-625
               

               
Cow position:
               
chr2:41939091-41938664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
8, 86
               

               
Conread position:
               
223-551
               

               
Cow position:
               
chr2:61048914-61048586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
20, 83
               

               
Conread position:
               
233-581
               

               
Cow position:
               
chr2:28024046-28023682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
17, 55
               

               
Conread position:
               
233-706
               

               
Cow position:
               
chr2:38013415-38012931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
136, 14
               

               
Conread position:
               
236-517
               

               
Cow position:
               
chr2:13707917-13707637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
11, 62
               

               
Conread position:
               
239-584
               

               
Cow position:
               
chr2:12516428-12516779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
46, 60
               

               
Conread position:
               
263-669
               

               
Cow position:
               
chr2:64580160-64580568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
22, 30
               

               
Conread position:
               
298-592
               

               
Cow position:
               
chr2:55478785-55479097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
331-591
               

               
Cow position:
               
chr2:3970653-3970384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
23, 106
               

               
Conread position:
               
441-714
               

               
Cow position:
               
chr2:62749063-62749342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
75, 11
               

               
Conread position:
               
442-711
               

               
Cow position:
               
chr2:19192016-19192287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
78, 13
               

               
Conread position:
               
2-717
               

               
Cow position:
               
chr20:2008915-2009605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
736
               

               
Alignm identity:
               
457
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
20, 73
               

               
Conread position:
               
7-513
               

               
Cow position:
               
chr20:38917848-38917357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
15, 68
               

               
Conread position:
               
189-625
               

               
Cow position:
               
chr20:21968707-21969150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
14, 24
               

               
Conread position:
               
201-727
               

               
Cow position:
               
chr20:5374287-5374825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
553
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
132, 28
               

               
Conread position:
               
203-596
               

               
Cow position:
               
chr20:20410246-20410641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
119, 13
               

               
Conread position:
               
204-688
               

               
Cow position:
               
chr20:9127442-9127911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
81, 34
               

               
Conread position:
               
233-583
               

               
Cow position:
               
chr20:35125781-35125413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
23, 62
               

               
Conread position:
               
233-713
               

               
Cow position:
               
chr20:8366645-8367118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
128, 14
               

               
Conread position:
               
297-732
               

               
Cow position:
               
chr20:9119349-9119793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
17, 26
               

               
Conread position:
               
302-669
               

               
Cow position:
               
chr20:2399851-2399468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
20, 116
               

               
Conread position:
               
305-609
               

               
Cow position:
               
chr20:16428599-16428902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
75, 36
               

               
Conread position:
               
386-581
               

               
Cow position:
               
chr20:13792442-13792247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
135, 50
               

               
Conread position:
               
419-609
               

               
Cow position:
               
chr20:871883-872072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
1-608
               

               
Cow position:
               
chr21:12863600-12863028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
617
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
20, 53
               

               
Conread position:
               
81-684
               

               
Cow position:
               
chr21:34041974-34041380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
620
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
22, 12
               

               
Conread position:
               
89-607
               

               
Cow position:
               
chr21:45491589-45491060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
69, 19
               

               
Conread position:
               
189-603
               

               
Cow position:
               
chr21:38091777-38091359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
140, 50
               

               
Conread position:
               
197-592
               

               
Cow position:
               
chr21:13086506-13086107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
88, 39
               

               
Conread position:
               
214-517
               

               
Cow position:
               
chr21:4789237-4789540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
106, 24
               

               
Conread position:
               
231-517
               

               
Cow position:
               
chr21:21138878-21138589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
52, 20
               

               
Conread position:
               
231-684
               

               
Cow position:
               
chr21:16693621-16693163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
132, 119
               

               
Conread position:
               
233-669
               

               
Cow position:
               
chr21:1193156-1192708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
23, 61
               

               
Conread position:
               
233-669
               

               
Cow position:
               
chr21:26402087-26402540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
23, 193
               

               
Conread position:
               
234-579
               

               
Cow position:
               
chr21:10851485-10851117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
22, 45
               

               
Conread position:
               
234-715
               

               
Cow position:
               
chr21:45115485-45114998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
24, 59
               

               
Conread position:
               
255-514
               

               
Cow position:
               
chr21:2901131-2900863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
81, 30
               

               
Conread position:
               
257-732
               

               
Cow position:
               
chr21:27596175-27595689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
56, 28
               

               
Conread position:
               
305-594
               

               
Cow position:
               
chr21:23943457-23943754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
25, 64
               

               
Conread position:
               
344-669
               

               
Cow position:
               
chr21:45301200-45301529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
126, 84
               

               
Conread position:
               
4-615
               

               
Cow position:
               
chr22:4242195-4242788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
631
               

               
Alignm identity:
               
400
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
15, 41
               

               
Conread position:
               
9-686
               

               
Cow position:
               
chr22:10303904-10304548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
689
               

               
Alignm identity:
               
427
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
14, 50
               

               
Conread position:
               
21-498
               

               
Cow position:
               
chr22:203135-202671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
350, 37
               

               
Conread position:
               
32-727
               

               
Cow position:
               
chr22:13673396-13674092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
725
               

               
Alignm identity:
               
447
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
58, 47
               

               
Conread position:
               
189-669
               

               
Cow position:
               
chr22:10560271-10559795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
23, 15
               

               
Conread position:
               
233-584
               

               
Cow position:
               
chr22:36860309-36860671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
24, 62
               

               
Conread position:
               
239-732
               

               
Cow position:
               
chr22:34958707-34958196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
91, 203
               

               
Conread position:
               
256-730
               

               
Cow position:
               
chr22:38176295-38175814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
29, 37
               

               
Conread position:
               
264-732
               

               
Cow position:
               
chr22:23942947-23943430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
51, 13
               

               
Conread position:
               
271-669
               

               
Cow position:
               
chr22:37292474-37292894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
14, 22
               

               
Conread position:
               
288-632
               

               
Cow position:
               
chr22:13764721-13764371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
34, 74
               

               
Conread position:
               
321-517
               

               
Cow position:
               
chr22:16013873-16013676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
53, 114
               

               
Conread position:
               
1-495
               

               
Cow position:
               
chr23:13322725-13322245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
9, 64
               

               
Conread position:
               
9-718
               

               
Cow position:
               
chr23:14263302-14262582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
744
               

               
Alignm identity:
               
476
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 136
               

               
Conread position:
               
10-672
               

               
Cow position:
               
chr23:3879657-3880309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
683
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
10, 91
               

               
Conread position:
               
54-514
               

               
Cow position:
               
chr23:18266227-18266689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
99, 33
               

               
Conread position:
               
82-590
               

               
Cow position:
               
chr23:3181337-3180842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
18, 51
               

               
Conread position:
               
202-513
               

               
Cow position:
               
chr23:32892120-32892433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
124, 34
               

               
Conread position:
               
202-607
               

               
Cow position:
               
chr23:8299125-8299531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
145, 23
               

               
Conread position:
               
233-592
               

               
Cow position:
               
chr23:15178302-15177926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
23, 61
               

               
Conread position:
               
233-669
               

               
Cow position:
               
chr23:2025854-2026303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
23, 45
               

               
Conread position:
               
250-592
               

               
Cow position:
               
chr23:16236252-16236603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
35, 43
               

               
Conread position:
               
7-368
               

               
Cow position:
               
chr24:17734000-17733639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
14, 87
               

               
Conread position:
               
9-513
               

               
Cow position:
               
chr24:29408181-29408679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
12, 79
               

               
Conread position:
               
9-584
               

               
Cow position:
               
chr24:19834924-19834339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
602
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
11, 67
               

               
Conread position:
               
9-605
               

               
Cow position:
               
chr24:9545574-9544991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
612
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
12, 34
               

               
Conread position:
               
25-402
               

               
Cow position:
               
chr24:17425237-17425595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
265, 40
               

               
Conread position:
               
76-669
               

               
Cow position:
               
chr24:25467166-25467755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
610
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
93, 31
               

               
Conread position:
               
203-683
               

               
Cow position:
               
chr24:910395-910877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
138, 24
               

               
Conread position:
               
204-652
               

               
Cow position:
               
chr24:22482740-22482288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
74, 21
               

               
Conread position:
               
233-513
               

               
Cow position:
               
chr24:27127767-27128055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
57, 14
               

               
Conread position:
               
323-686
               

               
Cow position:
               
chr24:25538111-25538466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
50, 14
               

               
Conread position:
               
374-714
               

               
Cow position:
               
chr24:39448486-39448827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
36, 22
               

               
Conread position:
               
7-492
               

               
Cow position:
               
chr25:32902399-32901922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
14, 57
               

               
Conread position:
               
11-670
               

               
Cow position:
               
chr25:13999242-13998603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
667
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
10, 89
               

               
Conread position:
               
11-732
               

               
Cow position:
               
chr25:21424973-21424272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
741
               

               
Alignm identity:
               
462
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
10, 22
               

               
Conread position:
               
93-517
               

               
Cow position:
               
chr25:20595430-20595003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
24, 51
               

               
Conread position:
               
201-514
               

               
Cow position:
               
chr25:30158041-30158356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
82, 24
               

               
Conread position:
               
208-662
               

               
Cow position:
               
chr25:24946830-24947277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
104, 17
               

               
Conread position:
               
233-669
               

               
Cow position:
               
chr25:20630905-20630452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
23, 70
               

               
Conread position:
               
234-730
               

               
Cow position:
               
chr25:23848408-23848901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
137, 42
               

               
Conread position:
               
236-673
               

               
Cow position:
               
chr25:37974278-37973837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
90, 11
               

               
Conread position:
               
255-575
               

               
Cow position:
               
chr25:3925069-3924751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
119, 8
               

               
Conread position:
               
453-685
               

               
Cow position:
               
chr25:32156370-32156609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
67, 237
               

               
Conread position:
               
203-584
               

               
Cow position:
               
chr26:34490729-34490347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
82, 41
               

               
Conread position:
               
233-671
               

               
Cow position:
               
chr26:6029098-6028662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
50, 14
               

               
Conread position:
               
238-600
               

               
Cow position:
               
chr26:28378999-28378631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
38, 10
               

               
Conread position:
               
7-585
               

               
Cow position:
               
chr27:23904561-23905123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
15, 68
               

               
Conread position:
               
9-592
               

               
Cow position:
               
chr27:15635907-15636492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
606
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
12, 93
               

               
Conread position:
               
32-592
               

               
Cow position:
               
chr27:30911642-30911109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
571
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
69, 42
               

               
Conread position:
               
189-694
               

               
Cow position:
               
chr27:27816897-27816394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
525
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
96, 37
               

               
Conread position:
               
203-714
               

               
Cow position:
               
chr27:2075136-2074623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
108, 36
               

               
Conread position:
               
233-672
               

               
Cow position:
               
chr27:13898553-13898101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
23, 62
               

               
Conread position:
               
234-669
               

               
Cow position:
               
chr27:18180798-18180363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
15, 59
               

               
Conread position:
               
234-725
               

               
Cow position:
               
chr27:28892826-28892319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
15, 60
               

               
Conread position:
               
288-631
               

               
Cow position:
               
chr27:17319326-17319679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
25, 138
               

               
Conread position:
               
9-432
               

               
Cow position:
               
chr28:23279483-23279901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
14, 42
               

               
Conread position:
               
9-569
               

               
Cow position:
               
chr28:12408746-12409310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
582
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
14, 65
               

               
Conread position:
               
9-584
               

               
Cow position:
               
chr28:17665828-17666398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
596
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
12, 92
               

               
Conread position:
               
9-584
               

               
Cow position:
               
chr28:22259671-22260243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
595
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
18, 65
               

               
Conread position:
               
35-583
               

               
Cow position:
               
chr28:5750247-5750798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
568
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
250, 65
               

               
Conread position:
               
75-582
               

               
Cow position:
               
chr28:21626605-21626083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
539
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
16, 80
               

               
Conread position:
               
93-668
               

               
Cow position:
               
chr28:24541474-24540919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
587
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
46, 28
               

               
Conread position:
               
201-665
               

               
Cow position:
               
chr28:4546698-4546239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
84, 24
               

               
Conread position:
               
202-453
               

               
Cow position:
               
chr28:9584970-9584717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
111, 22
               

               
Conread position:
               
203-512
               

               
Cow position:
               
chr28:28122666-28122362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
63, 21
               

               
Conread position:
               
233-669
               

               
Cow position:
               
chr28:8380341-8379879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
23, 62
               

               
Conread position:
               
234-620
               

               
Cow position:
               
chr28:24891083-24890700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
51, 13
               

               
Conread position:
               
237-732
               

               
Cow position:
               
chr28:9241874-9242377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
93, 10
               

               
Conread position:
               
244-669
               

               
Cow position:
               
chr28:27958435-27958859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
41, 50
               

               
Conread position:
               
255-583
               

               
Cow position:
               
chr28:8356670-8356333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
30, 42
               

               
Conread position:
               
258-668
               

               
Cow position:
               
chr28:28226357-28225942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
32, 18
               

               
Conread position:
               
262-669
               

               
Cow position:
               
chr28:1813619-1814041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
23, 31
               

               
Conread position:
               
300-719
               

               
Cow position:
               
chr28:9269060-9268641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
34, 97
               

               
Conread position:
               
233-592
               

               
Cow position:
               
chr29:10647007-10647381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
23, 62
               

               
Conread position:
               
233-594
               

               
Cow position:
               
chr29:32541337-32540957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
23, 62
               

               
Conread position:
               
233-684
               

               
Cow position:
               
chr29:31023571-31024018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
52, 14
               

               
Conread position:
               
257-671
               

               
Cow position:
               
chr29:28576170-28576582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
72, 27
               

               
Conread position:
               
299-607
               

               
Cow position:
               
chr29:28811564-28811260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
70, 33
               

               
Conread position:
               
300-723
               

               
Cow position:
               
chr29:29593935-29594355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
73, 29
               

               
Conread position:
               
321-712
               

               
Cow position:
               
chr29:31767077-31767467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
197, 90
               

               
Conread position:
               
4-513
               

               
Cow position:
               
chr3:82638459-82637973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
18, 62
               

               
Conread position:
               
7-586
               

               
Cow position:
               
chr3:37952631-37953209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
596
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
145, 66
               

               
Conread position:
               
7-592
               

               
Cow position:
               
chr3:10095774-10095210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
603
               

               
Alignm identity:
               
403
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
14, 58
               

               
Conread position:
               
9-671
               

               
Cow position:
               
chr3:45975869-45975203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
693
               

               
Alignm identity:
               
426
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
12, 134
               

               
Conread position:
               
20-604
               

               
Cow position:
               
chr3:27980231-27979655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
186, 57
               

               
Conread position:
               
20-669
               

               
Cow position:
               
chr3:57483376-57484023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
671
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
265, 80
               

               
Conread position:
               
189-580
               

               
Cow position:
               
chr3:31574592-31574198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
124, 15
               

               
Conread position:
               
189-590
               

               
Cow position:
               
chr3:57537727-57537322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
127, 15
               

               
Conread position:
               
189-609
               

               
Cow position:
               
chr3:14660209-14660643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
15, 65
               

               
Conread position:
               
201-514
               

               
Cow position:
               
chr3:71237580-71237889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
154, 35
               

               
Conread position:
               
201-706
               

               
Cow position:
               
chr3:58166269-58165749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
120, 37
               

               
Conread position:
               
204-517
               

               
Cow position:
               
chr3:27301391-27301721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
83, 9
               

               
Conread position:
               
208-592
               

               
Cow position:
               
chr3:79117327-79116957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
303, 10
               

               
Conread position:
               
208-732
               

               
Cow position:
               
chr3:75064234-75064751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
77, 19
               

               
Conread position:
               
217-714
               

               
Cow position:
               
chr3:15806687-15806192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
201, 22
               

               
Conread position:
               
219-708
               

               
Cow position:
               
chr3:37841595-37842089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
18, 38
               

               
Conread position:
               
220-493
               

               
Cow position:
               
chr3:71211262-71211542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
108, 67
               

               
Conread position:
               
221-670
               

               
Cow position:
               
chr3:33697487-33697930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
73, 26
               

               
Conread position:
               
236-609
               

               
Cow position:
               
chr3:79431557-79431941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
49, 12
               

               
Conread position:
               
237-592
               

               
Cow position:
               
chr3:46816543-46816906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
5, 45
               

               
Conread position:
               
237-668
               

               
Cow position:
               
chr3:67779250-67778811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
15, 29
               

               
Conread position:
               
267-669
               

               
Cow position:
               
chr3:22853376-22853786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
18, 25
               

               
Conread position:
               
289-656
               

               
Cow position:
               
chr3:11541838-11541454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
33, 161
               

               
Conread position:
               
304-732
               

               
Cow position:
               
chr3:3564053-3563640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
25, 73
               

               
Conread position:
               
305-709
               

               
Cow position:
               
chr3:28300785-28300374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
80, 66
               

               
Conread position:
               
321-713
               

               
Cow position:
               
chr3:39661786-39662174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
45, 118
               

               
Conread position:
               
322-669
               

               
Cow position:
               
chr3:15720776-15720426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
195, 60
               

               
Conread position:
               
330-668
               

               
Cow position:
               
chr3:43429567-43429925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
40, 112
               

               
Conread position:
               
383-694
               

               
Cow position:
               
chr3:81005471-81005150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
22, 29
               

               
Conread position:
               
383-694
               

               
Cow position:
               
chr3:81592698-81593019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
22, 29
               

               
Conread position:
               
391-654
               

               
Cow position:
               
chr3:7313974-7314237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
17, 38
               

               
Conread position:
               
2-669
               

               
Cow position:
               
chr4:43882279-43881615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
687
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
19, 99
               

               
Conread position:
               
4-669
               

               
Cow position:
               
chr4:37268-37915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
673
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
20, 84
               

               
Conread position:
               
6-669
               

               
Cow position:
               
chr4:25598320-25598986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
688
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
15, 95
               

               
Conread position:
               
20-583
               

               
Cow position:
               
chr4:31564133-31564712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
590
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
105, 80
               

               
Conread position:
               
26-669
               

               
Cow position:
               
chr4:44924388-44925013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
659
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
54, 74
               

               
Conread position:
               
79-669
               

               
Cow position:
               
chr4:357014-356419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
610
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
88, 21
               

               
Conread position:
               
200-587
               

               
Cow position:
               
chr4:14199162-14198781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
155, 28
               

               
Conread position:
               
201-517
               

               
Cow position:
               
chr4:38060724-38061045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
16, 38
               

               
Conread position:
               
201-714
               

               
Cow position:
               
chr4:43492719-43492209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
37, 24
               

               
Conread position:
               
230-592
               

               
Cow position:
               
chr4:14513967-14514347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
20, 65
               

               
Conread position:
               
231-669
               

               
Cow position:
               
chr4:33071862-33072311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
54, 29
               

               
Conread position:
               
233-668
               

               
Cow position:
               
chr4:16639574-16639121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
23, 63
               

               
Conread position:
               
234-592
               

               
Cow position:
               
chr4:13125844-13126206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
51, 13
               

               
Conread position:
               
235-510
               

               
Cow position:
               
chr4:25346479-25346213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
97, 11
               

               
Conread position:
               
236-664
               

               
Cow position:
               
chr4:26754029-26753589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
7, 14
               

               
Conread position:
               
237-617
               

               
Cow position:
               
chr4:10062378-10061990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
137, 13
               

               
Conread position:
               
263-608
               

               
Cow position:
               
chr4:11361387-11361735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
22, 29
               

               
Conread position:
               
289-671
               

               
Cow position:
               
chr4:59110128-59110510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
33, 105
               

               
Conread position:
               
322-669
               

               
Cow position:
               
chr4:61107843-61108180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
159, 35
               

               
Conread position:
               
323-669
               

               
Cow position:
               
chr4:61453590-61453949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
18, 81
               

               
Conread position:
               
4-732
               

               
Cow position:
               
chr5:64794835-64794129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
745
               

               
Alignm identity:
               
461
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
92, 11
               

               
Conread position:
               
9-584
               

               
Cow position:
               
chr5:6153634-6154209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
595
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
11, 92
               

               
Conread position:
               
9-669
               

               
Cow position:
               
chr5:64780750-64781410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
683
               

               
Alignm identity:
               
427
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
12, 92
               

               
Conread position:
               
21-589
               

               
Cow position:
               
chr5:21117003-21116437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
589
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
75, 54
               

               
Conread position:
               
35-714
               

               
Cow position:
               
chr5:62414215-62413537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
705
               

               
Alignm identity:
               
431
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
105, 39
               

               
Conread position:
               
164-732
               

               
Cow position:
               
chr5:20429178-20428599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
591
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
59, 16
               

               
Conread position:
               
199-431
               

               
Cow position:
               
chr5:27198515-27198755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
8, 34
               

               
Conread position:
               
203-555
               

               
Cow position:
               
chr5:74502706-74502340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
32, 62
               

               
Conread position:
               
205-684
               

               
Cow position:
               
chr5:52878822-52878338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
68, 20
               

               
Conread position:
               
231-581
               

               
Cow position:
               
chr5:64425953-64425592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
29, 16
               

               
Conread position:
               
233-592
               

               
Cow position:
               
chr5:49519620-49519243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
23, 62
               

               
Conread position:
               
234-672
               

               
Cow position:
               
chr5:74922985-74922532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
13, 62
               

               
Conread position:
               
235-514
               

               
Cow position:
               
chr5:25636893-25636610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
50, 12
               

               
Conread position:
               
236-582
               

               
Cow position:
               
chr5:74861592-74861948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
90, 11
               

               
Conread position:
               
237-513
               

               
Cow position:
               
chr5:69622660-69622377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
81, 10
               

               
Conread position:
               
350-669
               

               
Cow position:
               
chr5:53703230-53703554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
17, 67
               

               
Conread position:
               
4-584
               

               
Cow position:
               
chr6:15139766-15140350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
604
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
17, 97
               

               
Conread position:
               
7-732
               

               
Cow position:
               
chr6:19492691-19491993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
739
               

               
Alignm identity:
               
462
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
14, 59
               

               
Conread position:
               
9-513
               

               
Cow position:
               
chr6:29312909-29312409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
15, 65
               

               
Conread position:
               
20-685
               

               
Cow position:
               
chr6:47041818-47042474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
682
               

               
Alignm identity:
               
424
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
58, 117
               

               
Conread position:
               
94-728
               

               
Cow position:
               
chr6:32448579-32449212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
661
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
7, 101
               

               
Conread position:
               
193-669
               

               
Cow position:
               
chr6:69391289-69391758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
175, 11
               

               
Conread position:
               
201-714
               

               
Cow position:
               
chr6:20648855-20649365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
534
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
84, 24
               

               
Conread position:
               
202-682
               

               
Cow position:
               
chr6:64281840-64282323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
124, 25
               

               
Conread position:
               
203-714
               

               
Cow position:
               
chr6:24463213-24463724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
82, 21
               

               
Conread position:
               
208-685
               

               
Cow position:
               
chr6:54415592-54415106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
77, 31
               

               
Conread position:
               
208-686
               

               
Cow position:
               
chr6:11444189-11444680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
110, 231
               

               
Conread position:
               
233-597
               

               
Cow position:
               
chr6:18974323-18973983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
52, 15
               

               
Conread position:
               
233-669
               

               
Cow position:
               
chr6:51715725-51715285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
23, 53
               

               
Conread position:
               
247-669
               

               
Cow position:
               
chr6:10060038-10059603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
56, 36
               

               
Conread position:
               
296-669
               

               
Cow position:
               
chr6:30102594-30102222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
76, 25
               

               
Conread position:
               
321-583
               

               
Cow position:
               
chr6:58027779-58027505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
52, 100
               

               
Conread position:
               
376-712
               

               
Cow position:
               
chr6:57408323-57408659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
173, 55
               

               
Conread position:
               
9-581
               

               
Cow position:
               
chr7:64239499-64240078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
596
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
12, 92
               

               
Conread position:
               
45-500
               

               
Cow position:
               
chr7:21096745-21097191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
51, 29
               

               
Conread position:
               
231-669
               

               
Cow position:
               
chr7:33759659-33759229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
286, 65
               

               
Conread position:
               
233-584
               

               
Cow position:
               
chr7:1371353-1371724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
23, 62
               

               
Conread position:
               
233-623
               

               
Cow position:
               
chr7:44215996-44215598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
60, 14
               

               
Conread position:
               
233-669
               

               
Cow position:
               
chr7:21126371-21126826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
27, 62
               

               
Conread position:
               
233-669
               

               
Cow position:
               
chr7:34487205-34486752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
23, 62
               

               
Conread position:
               
235-583
               

               
Cow position:
               
chr7:6391124-6390769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
85, 38
               

               
Conread position:
               
236-573
               

               
Cow position:
               
chr7:45915656-45915321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
49, 11
               

               
Conread position:
               
294-574
               

               
Cow position:
               
chr7:33003026-33002747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
71, 143
               

               
Conread position:
               
300-590
               

               
Cow position:
               
chr7:23149098-23148800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
18, 134
               

               
Conread position:
               
434-697
               

               
Cow position:
               
chr7:3549404-3549672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
83, 104
               

               
Conread position:
               
9-584
               

               
Cow position:
               
chr8:24914640-24915226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
601
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
12, 67
               

               
Conread position:
               
9-714
               

               
Cow position:
               
chr8:33590062-33589352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
733
               

               
Alignm identity:
               
454
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
12, 67
               

               
Conread position:
               
18-669
               

               
Cow position:
               
chr8:7162567-7161921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
674
               

               
Alignm identity:
               
416
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
267, 82
               

               
Conread position:
               
64-668
               

               
Cow position:
               
chr8:61839565-61840150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
611
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
221, 15
               

               
Conread position:
               
75-697
               

               
Cow position:
               
chr8:46108739-46109341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
634
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
10, 30
               

               
Conread position:
               
197-669
               

               
Cow position:
               
chr8:42870374-42869888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
88, 7
               

               
Conread position:
               
204-467
               

               
Cow position:
               
chr8:4940935-4940675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
154, 32
               

               
Conread position:
               
204-669
               

               
Cow position:
               
chr8:8106350-8106822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
81, 21
               

               
Conread position:
               
208-513
               

               
Cow position:
               
chr8:54517271-54516959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
118, 17
               

               
Conread position:
               
227-594
               

               
Cow position:
               
chr8:56466118-56465739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
9, 57
               

               
Conread position:
               
232-714
               

               
Cow position:
               
chr8:37698739-37698261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
17, 30
               

               
Conread position:
               
234-666
               

               
Cow position:
               
chr8:13491838-13491399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
51, 14
               

               
Conread position:
               
238-607
               

               
Cow position:
               
chr8:54074745-54074376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
47, 51
               

               
Conread position:
               
238-678
               

               
Cow position:
               
chr8:31249061-31248627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
47, 17
               

               
Conread position:
               
248-718
               

               
Cow position:
               
chr8:48681745-48681279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
74, 28
               

               
Conread position:
               
256-713
               

               
Cow position:
               
chr8:36533839-36534307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
66, 24
               

               
Conread position:
               
334-670
               

               
Cow position:
               
chr8:32815524-32815866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
27, 16
               

               
Conread position:
               
348-660
               

               
Cow position:
               
chr8:43045453-43045149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
15, 50
               

               
Conread position:
               
369-732
               

               
Cow position:
               
chr8:47683122-47682753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
145, 68
               

               
Conread position:
               
3-662
               

               
Cow position:
               
chr9:9647485-9646813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
688
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
17, 73
               

               
Conread position:
               
9-584
               

               
Cow position:
               
chr9:6250633-6250061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
18, 65
               

               
Conread position:
               
9-584
               

               
Cow position:
               
chr9:21410633-21410054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
602
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
12, 67
               

               
Conread position:
               
9-669
               

               
Cow position:
               
chr9:17304643-17305302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
680
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
12, 101
               

               
Conread position:
               
9-669
               

               
Cow position:
               
chr9:22654911-22654248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
683
               

               
Alignm identity:
               
416
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
12, 92
               

               
Conread position:
               
40-638
               

               
Cow position:
               
chr9:62381234-62380638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
617
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
64, 14
               

               
Conread position:
               
201-477
               

               
Cow position:
               
chr9:41467982-41467707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
84, 25
               

               
Conread position:
               
202-584
               

               
Cow position:
               
chr9:47810087-47810478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
10, 26
               

               
Conread position:
               
207-671
               

               
Cow position:
               
chr9:28311258-28311732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
82, 32
               

               
Conread position:
               
234-590
               

               
Cow position:
               
chr9:1497033-1497389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
20, 38
               

               
Conread position:
               
254-732
               

               
Cow position:
               
chr9:28696555-28696071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
16, 24
               

               
Conread position:
               
262-584
               

               
Cow position:
               
chr9:16176865-16176530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
58, 22
               

               
Conread position:
               
396-686
               

               
Cow position:
               
chr9:39731106-39731393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
138, 32
               

               
Conread position:
               
7-517
               

               
Cow position:
               
chrX:19725745-19726249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
16, 131
               

               
Conread position:
               
9-671
               

               
Cow position:
               
chrX:1548218-1547558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
689
               

               
Alignm identity:
               
428
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
12, 34
               

               
Conread position:
               
20-587
               

               
Cow position:
               
chrX:24523985-24523419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
583
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
306, 139
               

               
Conread position:
               
72-592
               

               
Cow position:
               
chrX:5854281-5854797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
545
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
27, 63
               

               
Conread position:
               
74-670
               

               
Cow position:
               
chrX:21731574-21732180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
626
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
16, 91
               

               
Conread position:
               
99-694
               

               
Cow position:
               
chrX:23958203-23957626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
607
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
200-609
               

               
Cow position:
               
chrX:44752150-44752570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
129, 25
               

               
Conread position:
               
201-632
               

               
Cow position:
               
chrX:21971879-21971454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
116, 24
               

               
Conread position:
               
201-669
               

               
Cow position:
               
chrX:17612963-17613435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
84, 35
               

               
Conread position:
               
201-671
               

               
Cow position:
               
chrX:11772115-11772578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
141, 14
               

               
Conread position:
               
203-474
               

               
Cow position:
               
chrX:12067054-12066780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
82, 22
               

               
Conread position:
               
205-574
               

               
Cow position:
               
chrX:11086232-11086612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
80, 10
               

               
Conread position:
               
209-501
               

               
Cow position:
               
chrX:18904432-18904733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
124, 20
               

               
Conread position:
               
215-500
               

               
Cow position:
               
chrX:33802174-33801896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
70, 10
               

               
Conread position:
               
228-669
               

               
Cow position:
               
chrX:29852528-29852984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
28, 67
               

               
Conread position:
               
229-500
               

               
Cow position:
               
chrX:19605293-19605564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
8, 26
               

               
Conread position:
               
233-583
               

               
Cow position:
               
chrX:26529010-26528643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
23, 62
               

               
Conread position:
               
233-669
               

               
Cow position:
               
chrX:29286469-29286011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
23, 62
               

               
Conread position:
               
233-712
               

               
Cow position:
               
chrX:18553462-18552966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
52, 14
               

               
Conread position:
               
266-677
               

               
Cow position:
               
chrX:21275916-21276323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
32, 15
               

               
Conread position:
               
297-695
               

               
Cow position:
               
chrX:17727550-17727151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
218, 21
               

               
Conread position:
               
302-593
               

               
Cow position:
               
chrX:12017394-12017692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
24, 109
               

               
Conread position:
               
321-661
               

               
Cow position:
               
chrX:18768111-18767763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
50, 67
               

               
Conread position:
               
372-732
               

               
Cow position:
               
chrX:20506420-20506055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
15, 24
               

               
Conread position:
               
387-517
               

               
Cow position:
               
chrX:10441917-10442044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
23, 0