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Cow genome map

           
Conread name:
           
Ss1.1-Pig4-TMW8068E11.3
        

               
Conread position:
               
346-492
               

               
Cow position:
               
chr10:9012862-9012716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
652-1003
               

               
Cow position:
               
chr10:6811680-6812026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
107, 17
               

               
Conread position:
               
652-1008
               

               
Cow position:
               
chr10:55641598-55641243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
210, 55
               

               
Conread position:
               
657-1008
               

               
Cow position:
               
chr10:58705705-58706048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
126, 24
               

               
Conread position:
               
684-1008
               

               
Cow position:
               
chr10:43342621-43342954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
23, 40
               

               
Conread position:
               
708-1008
               

               
Cow position:
               
chr10:7501453-7501154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
135, 10
               

               
Conread position:
               
723-1005
               

               
Cow position:
               
chr10:57367670-57367950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
147, 42
               

               
Conread position:
               
726-1008
               

               
Cow position:
               
chr10:25976425-25976134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
55, 38
               

               
Conread position:
               
738-1008
               

               
Cow position:
               
chr10:44721186-44720924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
129, 42
               

               
Conread position:
               
751-1006
               

               
Cow position:
               
chr10:27173523-27173780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
30, 74
               

               
Conread position:
               
762-1008
               

               
Cow position:
               
chr10:10715537-10715783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
117, 18
               

               
Conread position:
               
766-1008
               

               
Cow position:
               
chr10:10435786-10435547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
195, 42
               

               
Conread position:
               
790-1006
               

               
Cow position:
               
chr10:44861955-44862173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
109, 33
               

               
Conread position:
               
563-947
               

               
Cow position:
               
chr11:20835652-20835255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
16, 112
               

               
Conread position:
               
566-1008
               

               
Cow position:
               
chr11:52889879-52889445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
118, 20
               

               
Conread position:
               
637-1008
               

               
Cow position:
               
chr11:26735716-26735344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
44, 32
               

               
Conread position:
               
648-1008
               

               
Cow position:
               
chr11:53204133-53203769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
28, 38
               

               
Conread position:
               
653-1008
               

               
Cow position:
               
chr11:76676050-76675692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
41, 48
               

               
Conread position:
               
658-947
               

               
Cow position:
               
chr11:50462593-50462313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
212, 37
               

               
Conread position:
               
669-1008
               

               
Cow position:
               
chr11:15470506-15470180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
207, 46
               

               
Conread position:
               
714-1008
               

               
Cow position:
               
chr11:22291465-22291760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
67, 11
               

               
Conread position:
               
714-1008
               

               
Cow position:
               
chr11:45838806-45839102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
69, 6
               

               
Conread position:
               
729-1008
               

               
Cow position:
               
chr11:68664831-68664555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
141, 11
               

               
Conread position:
               
739-1000
               

               
Cow position:
               
chr11:19426640-19426901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
128, 39
               

               
Conread position:
               
739-1003
               

               
Cow position:
               
chr11:29010483-29010750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
30, 87
               

               
Conread position:
               
741-1008
               

               
Cow position:
               
chr11:81454196-81454467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
56, 41
               

               
Conread position:
               
742-1008
               

               
Cow position:
               
chr11:18694777-18694499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
27, 229
               

               
Conread position:
               
639-1008
               

               
Cow position:
               
chr12:38344035-38344394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
43, 7
               

               
Conread position:
               
660-1000
               

               
Cow position:
               
chr12:12876713-12877042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
17, 40
               

               
Conread position:
               
685-1008
               

               
Cow position:
               
chr12:26236661-26236338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
38, 29
               

               
Conread position:
               
726-1007
               

               
Cow position:
               
chr12:27353321-27353591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
211, 30
               

               
Conread position:
               
738-1007
               

               
Cow position:
               
chr12:27920947-27921203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
741-1008
               

               
Cow position:
               
chr12:2809223-2808949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
42, 18
               

               
Conread position:
               
346-481
               

               
Cow position:
               
chr13:22118987-22119122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
346-481
               

               
Cow position:
               
chr13:24158259-24158394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
347-480
               

               
Cow position:
               
chr13:39980973-39981106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
714-1008
               

               
Cow position:
               
chr13:28093904-28094204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
158, 11
               

               
Conread position:
               
714-1008
               

               
Cow position:
               
chr13:34248259-34248556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
75, 11
               

               
Conread position:
               
715-1008
               

               
Cow position:
               
chr13:35008938-35008642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
23, 31
               

               
Conread position:
               
729-1005
               

               
Cow position:
               
chr13:32183425-32183159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
95, 129
               

               
Conread position:
               
739-1007
               

               
Cow position:
               
chr13:18144329-18144055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
8, 236
               

               
Conread position:
               
740-1007
               

               
Cow position:
               
chr13:5656463-5656732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
43, 31
               

               
Conread position:
               
744-1008
               

               
Cow position:
               
chr13:40312905-40313180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
119, 106
               

               
Conread position:
               
785-1008
               

               
Cow position:
               
chr13:44390176-44389950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
347-480
               

               
Cow position:
               
chr14:25832146-25832279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
347-480
               

               
Cow position:
               
chr14:25855589-25855722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
347-480
               

               
Cow position:
               
chr14:25888961-25889094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
347-508
               

               
Cow position:
               
chr14:25871858-25872020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
139, 0
               

               
Conread position:
               
357-480
               

               
Cow position:
               
chr14:25906776-25906899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
41, 47
               

               
Conread position:
               
367-480
               

               
Cow position:
               
chr14:665813-665700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
541-1008
               

               
Cow position:
               
chr14:41458478-41458022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
82, 41
               

               
Conread position:
               
649-1008
               

               
Cow position:
               
chr14:37611009-37610656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
117, 64
               

               
Conread position:
               
652-999
               

               
Cow position:
               
chr14:7964726-7964381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
63, 17
               

               
Conread position:
               
679-1008
               

               
Cow position:
               
chr14:41091140-41091476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
6, 42
               

               
Conread position:
               
705-951
               

               
Cow position:
               
chr14:33269307-33269560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
16, 120
               

               
Conread position:
               
726-1008
               

               
Cow position:
               
chr14:24520091-24519800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
143, 230
               

               
Conread position:
               
637-979
               

               
Cow position:
               
chr15:25442435-25442788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
28, 9
               

               
Conread position:
               
637-1008
               

               
Cow position:
               
chr15:5455688-5455319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
46, 32
               

               
Conread position:
               
649-935
               

               
Cow position:
               
chr15:30439174-30438890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
219, 46
               

               
Conread position:
               
652-1008
               

               
Cow position:
               
chr15:9038015-9038380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
31, 15
               

               
Conread position:
               
652-1008
               

               
Cow position:
               
chr15:29671282-29670926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
23, 212
               

               
Conread position:
               
709-1008
               

               
Cow position:
               
chr15:5883965-5883660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
18, 266
               

               
Conread position:
               
716-1008
               

               
Cow position:
               
chr15:25120817-25121114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
153, 130
               

               
Conread position:
               
739-1003
               

               
Cow position:
               
chr15:17470756-17471026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
131, 42
               

               
Conread position:
               
740-979
               

               
Cow position:
               
chr15:33705861-33706106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
38, 214
               

               
Conread position:
               
767-1008
               

               
Cow position:
               
chr15:7311989-7311748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
130, 88
               

               
Conread position:
               
772-1006
               

               
Cow position:
               
chr15:14619955-14619724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
121, 10
               

               
Conread position:
               
814-1005
               

               
Cow position:
               
chr15:27758239-27758434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
58, 102
               

               
Conread position:
               
571-1008
               

               
Cow position:
               
chr16:2000161-2000599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
51, 103
               

               
Conread position:
               
574-1008
               

               
Cow position:
               
chr16:40384806-40384369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
49, 77
               

               
Conread position:
               
658-947
               

               
Cow position:
               
chr16:20987519-20987809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
36, 57
               

               
Conread position:
               
684-947
               

               
Cow position:
               
chr16:19068010-19067741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
16, 84
               

               
Conread position:
               
735-1008
               

               
Cow position:
               
chr16:42839797-42840069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
24, 9
               

               
Conread position:
               
735-1008
               

               
Cow position:
               
chr16:43636797-43636525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
24, 9
               

               
Conread position:
               
738-938
               

               
Cow position:
               
chr16:52310701-52310907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
61, 70
               

               
Conread position:
               
744-1008
               

               
Cow position:
               
chr16:19395612-19395885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
117, 106
               

               
Conread position:
               
766-999
               

               
Cow position:
               
chr16:21771166-21771403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
103, 84
               

               
Conread position:
               
774-1008
               

               
Cow position:
               
chr16:3135201-3134969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
100, 9
               

               
Conread position:
               
807-1008
               

               
Cow position:
               
chr16:26682985-26682782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
90, 65
               

               
Conread position:
               
346-475
               

               
Cow position:
               
chr17:22472418-22472547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
346-480
               

               
Cow position:
               
chr17:44465944-44466078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
574-1006
               

               
Cow position:
               
chr17:28212360-28212774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
273, 49
               

               
Conread position:
               
704-1008
               

               
Cow position:
               
chr17:32500634-32500931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
234, 15
               

               
Conread position:
               
705-1008
               

               
Cow position:
               
chr17:28224029-28224334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
108, 18
               

               
Conread position:
               
705-1008
               

               
Cow position:
               
chr17:30753052-30753362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
54, 9
               

               
Conread position:
               
722-1008
               

               
Cow position:
               
chr17:28141147-28140855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
91, 49
               

               
Conread position:
               
726-1007
               

               
Cow position:
               
chr17:36579349-36579634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
5, 57
               

               
Conread position:
               
739-1003
               

               
Cow position:
               
chr17:36244889-36244628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
122, 22
               

               
Conread position:
               
739-1008
               

               
Cow position:
               
chr17:42349532-42349801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
123, 111
               

               
Conread position:
               
752-1001
               

               
Cow position:
               
chr17:32018955-32018709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
71, 89
               

               
Conread position:
               
341-487
               

               
Cow position:
               
chr18:50095775-50095921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
345-480
               

               
Cow position:
               
chr18:56332268-56332133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
345-488
               

               
Cow position:
               
chr18:1414851-1414994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
345-498
               

               
Cow position:
               
chr18:51796386-51796234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
12, 8
               

               
Conread position:
               
345-498
               

               
Cow position:
               
chr18:51819674-51819522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
13, 8
               

               
Conread position:
               
346-480
               

               
Cow position:
               
chr18:14458824-14458690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
346-480
               

               
Cow position:
               
chr18:42822245-42822379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
346-480
               

               
Cow position:
               
chr18:43143693-43143827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
346-480
               

               
Cow position:
               
chr18:49038987-49038853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
346-480
               

               
Cow position:
               
chr18:50033976-50033842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
346-480
               

               
Cow position:
               
chr18:50077706-50077840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
346-480
               

               
Cow position:
               
chr18:50267441-50267575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
346-480
               

               
Cow position:
               
chr18:50278846-50278980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
346-480
               

               
Cow position:
               
chr18:53618504-53618370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
346-480
               

               
Cow position:
               
chr18:55954137-55954271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
346-482
               

               
Cow position:
               
chr18:42785435-42785571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
346-484
               

               
Cow position:
               
chr18:50062905-50062767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
346-488
               

               
Cow position:
               
chr18:41193465-41193608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
347-480
               

               
Cow position:
               
chr18:56288182-56288049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
347-491
               

               
Cow position:
               
chr18:42699257-42699112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
354-480
               

               
Cow position:
               
chr18:42728286-42728160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
354-500
               

               
Cow position:
               
chr18:50842879-50843024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
79, 83
               

               
Conread position:
               
355-480
               

               
Cow position:
               
chr18:53646071-53645946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
654-942
               

               
Cow position:
               
chr18:43998584-43998290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
63, 20
               

               
Conread position:
               
712-1008
               

               
Cow position:
               
chr18:32046883-32046594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
111, 10
               

               
Conread position:
               
720-1003
               

               
Cow position:
               
chr18:35233384-35233097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
7, 78
               

               
Conread position:
               
722-1001
               

               
Cow position:
               
chr18:51301590-51301307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
7, 104
               

               
Conread position:
               
739-1003
               

               
Cow position:
               
chr18:19467835-19468100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
137, 43
               

               
Conread position:
               
741-1004
               

               
Cow position:
               
chr18:52803740-52803476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
131, 105
               

               
Conread position:
               
751-951
               

               
Cow position:
               
chr18:21405742-21405537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
11, 48
               

               
Conread position:
               
782-1008
               

               
Cow position:
               
chr18:6795109-6795338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
87, 118
               

               
Conread position:
               
795-1008
               

               
Cow position:
               
chr18:21213694-21213475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
75, 159
               

               
Conread position:
               
594-1004
               

               
Cow position:
               
chr19:36997293-36997713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
29, 124
               

               
Conread position:
               
603-1004
               

               
Cow position:
               
chr19:36978856-36979240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
18, 29
               

               
Conread position:
               
642-1004
               

               
Cow position:
               
chr19:37318592-37318237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
114, 72
               

               
Conread position:
               
645-1000
               

               
Cow position:
               
chr19:12326317-12326679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
82, 24
               

               
Conread position:
               
645-1008
               

               
Cow position:
               
chr19:20015309-20014936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
162, 53
               

               
Conread position:
               
703-1008
               

               
Cow position:
               
chr19:22013639-22013337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
9, 83
               

               
Conread position:
               
722-1008
               

               
Cow position:
               
chr19:18887750-18888040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
10, 149
               

               
Conread position:
               
725-1008
               

               
Cow position:
               
chr19:47784637-47784351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
88, 21
               

               
Conread position:
               
739-947
               

               
Cow position:
               
chr19:43070217-43070005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
59, 43
               

               
Conread position:
               
739-1008
               

               
Cow position:
               
chr19:41395575-41395854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
19, 47
               

               
Conread position:
               
740-1004
               

               
Cow position:
               
chr19:22500677-22500939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
129, 109
               

               
Conread position:
               
345-480
               

               
Cow position:
               
chr2:86463159-86463294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
347-495
               

               
Cow position:
               
chr2:5719204-5719354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
137, 0
               

               
Conread position:
               
609-1001
               

               
Cow position:
               
chr2:20950106-20950494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
160, 22
               

               
Conread position:
               
648-1008
               

               
Cow position:
               
chr2:49635090-49634733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
60, 14
               

               
Conread position:
               
652-947
               

               
Cow position:
               
chr2:84543314-84543602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
30, 9
               

               
Conread position:
               
653-945
               

               
Cow position:
               
chr2:14152148-14151853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
197, 56
               

               
Conread position:
               
663-1008
               

               
Cow position:
               
chr2:62057549-62057206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
218, 32
               

               
Conread position:
               
673-1008
               

               
Cow position:
               
chr2:1734285-1734622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
12, 59
               

               
Conread position:
               
682-1007
               

               
Cow position:
               
chr2:77397108-77396776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
37, 60
               

               
Conread position:
               
685-1003
               

               
Cow position:
               
chr2:33966192-33965879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
128, 28
               

               
Conread position:
               
715-1007
               

               
Cow position:
               
chr2:29189248-29189550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
21, 111
               

               
Conread position:
               
715-1008
               

               
Cow position:
               
chr2:64505232-64505534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
35, 10
               

               
Conread position:
               
719-958
               

               
Cow position:
               
chr2:23085648-23085404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
17, 62
               

               
Conread position:
               
722-1003
               

               
Cow position:
               
chr2:80135326-80135612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
140, 39
               

               
Conread position:
               
739-1002
               

               
Cow position:
               
chr2:72331031-72331295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
133, 43
               

               
Conread position:
               
739-1008
               

               
Cow position:
               
chr2:19882378-19882115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
39, 16
               

               
Conread position:
               
739-1008
               

               
Cow position:
               
chr2:75409702-75409430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
131, 61
               

               
Conread position:
               
739-1008
               

               
Cow position:
               
chr2:84610528-84610796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
37, 81
               

               
Conread position:
               
740-947
               

               
Cow position:
               
chr2:14424729-14424521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
83, 111
               

               
Conread position:
               
744-1008
               

               
Cow position:
               
chr2:72244315-72244581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
125, 79
               

               
Conread position:
               
749-1006
               

               
Cow position:
               
chr2:58794258-58794518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
143, 121
               

               
Conread position:
               
645-913
               

               
Cow position:
               
chr20:26402120-26402388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
8, 40
               

               
Conread position:
               
648-1008
               

               
Cow position:
               
chr20:5676522-5676167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
59, 35
               

               
Conread position:
               
660-1008
               

               
Cow position:
               
chr20:27195825-27195472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
47, 34
               

               
Conread position:
               
679-996
               

               
Cow position:
               
chr20:23142587-23142903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
28, 37
               

               
Conread position:
               
708-1008
               

               
Cow position:
               
chr20:942407-942714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
68, 6
               

               
Conread position:
               
720-1007
               

               
Cow position:
               
chr20:12575269-12575561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
150, 12
               

               
Conread position:
               
729-1008
               

               
Cow position:
               
chr20:10951826-10952112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
25, 38
               

               
Conread position:
               
741-1008
               

               
Cow position:
               
chr20:36789372-36789646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
50, 68
               

               
Conread position:
               
744-1006
               

               
Cow position:
               
chr20:37136316-37136581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
44, 119
               

               
Conread position:
               
775-1008
               

               
Cow position:
               
chr20:24697496-24697258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
93, 194
               

               
Conread position:
               
579-1000
               

               
Cow position:
               
chr21:44474578-44474154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
43, 23
               

               
Conread position:
               
635-1008
               

               
Cow position:
               
chr21:28202589-28202213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
34, 69
               

               
Conread position:
               
647-1007
               

               
Cow position:
               
chr21:34547600-34547966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
38, 20
               

               
Conread position:
               
704-1008
               

               
Cow position:
               
chr21:45494660-45494340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
65, 23
               

               
Conread position:
               
731-994
               

               
Cow position:
               
chr21:30816459-30816720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
57, 18
               

               
Conread position:
               
737-1008
               

               
Cow position:
               
chr21:32400892-32400609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
59, 27
               

               
Conread position:
               
744-1008
               

               
Cow position:
               
chr21:39763749-39764014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
126, 69
               

               
Conread position:
               
345-480
               

               
Cow position:
               
chr22:14465232-14465367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
345-488
               

               
Cow position:
               
chr22:14439806-14439949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
13, 23
               

               
Conread position:
               
652-1008
               

               
Cow position:
               
chr22:29893351-29892995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
217, 55
               

               
Conread position:
               
674-1008
               

               
Cow position:
               
chr22:7232147-7231801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
27, 285
               

               
Conread position:
               
712-1002
               

               
Cow position:
               
chr22:44671627-44671333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
46, 7
               

               
Conread position:
               
722-1008
               

               
Cow position:
               
chr22:13643360-13643645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
18, 67
               

               
Conread position:
               
735-948
               

               
Cow position:
               
chr22:13636671-13636881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
53, 15
               

               
Conread position:
               
738-1008
               

               
Cow position:
               
chr22:36998044-36998313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
145, 14
               

               
Conread position:
               
745-1008
               

               
Cow position:
               
chr22:39741646-39741903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
192, 113
               

               
Conread position:
               
647-1008
               

               
Cow position:
               
chr23:33772096-33771740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
46, 20
               

               
Conread position:
               
712-1008
               

               
Cow position:
               
chr23:31615404-31615105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
14, 136
               

               
Conread position:
               
751-1008
               

               
Cow position:
               
chr23:281676-281410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
118, 204
               

               
Conread position:
               
694-1004
               

               
Cow position:
               
chr24:41780019-41780323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
246, 88
               

               
Conread position:
               
739-1004
               

               
Cow position:
               
chr24:38834691-38834958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
131, 43
               

               
Conread position:
               
739-1008
               

               
Cow position:
               
chr24:23988449-23988174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
49, 121
               

               
Conread position:
               
776-1008
               

               
Cow position:
               
chr24:29200008-29200240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
8, 50
               

               
Conread position:
               
345-483
               

               
Cow position:
               
chr25:23415294-23415432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
346-484
               

               
Cow position:
               
chr25:33295401-33295539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
346-487
               

               
Cow position:
               
chr25:36799440-36799581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
356-480
               

               
Cow position:
               
chr25:36847433-36847309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
356-503
               

               
Cow position:
               
chr25:33313815-33313670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
649-1008
               

               
Cow position:
               
chr25:5644615-5644255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
10, 65
               

               
Conread position:
               
712-1008
               

               
Cow position:
               
chr25:16345780-16345483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
159, 9
               

               
Conread position:
               
723-938
               

               
Cow position:
               
chr25:27815953-27815734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
723-1008
               

               
Cow position:
               
chr25:10356511-10356801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
146, 126
               

               
Conread position:
               
723-1008
               

               
Cow position:
               
chr25:16056762-16057043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
116, 27
               

               
Conread position:
               
724-1003
               

               
Cow position:
               
chr25:19527548-19527841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
42, 252
               

               
Conread position:
               
739-1008
               

               
Cow position:
               
chr25:5154563-5154832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
114, 202
               

               
Conread position:
               
741-996
               

               
Cow position:
               
chr25:13973872-13973615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
133, 30
               

               
Conread position:
               
762-1008
               

               
Cow position:
               
chr25:30135896-30136148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
112, 26
               

               
Conread position:
               
646-1008
               

               
Cow position:
               
chr26:13545781-13546141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
21, 61
               

               
Conread position:
               
647-1008
               

               
Cow position:
               
chr26:14438035-14438391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
245, 59
               

               
Conread position:
               
648-1006
               

               
Cow position:
               
chr26:9493714-9494088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
29, 320
               

               
Conread position:
               
648-1008
               

               
Cow position:
               
chr26:8506613-8506962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
168, 58
               

               
Conread position:
               
652-1008
               

               
Cow position:
               
chr26:6736905-6736538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
51, 15
               

               
Conread position:
               
659-1008
               

               
Cow position:
               
chr26:23930415-23930764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
50, 25
               

               
Conread position:
               
709-1008
               

               
Cow position:
               
chr26:18580476-18580781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
79, 41
               

               
Conread position:
               
714-1008
               

               
Cow position:
               
chr26:25478025-25477734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
165, 11
               

               
Conread position:
               
734-1008
               

               
Cow position:
               
chr26:29086039-29086321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
35, 227
               

               
Conread position:
               
637-1000
               

               
Cow position:
               
chr27:1310421-1310055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
89, 30
               

               
Conread position:
               
637-1000
               

               
Cow position:
               
chr27:1312497-1312131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
89, 30
               

               
Conread position:
               
777-1008
               

               
Cow position:
               
chr27:2084172-2084409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
92, 175
               

               
Conread position:
               
309-489
               

               
Cow position:
               
chr28:7803815-7803995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
17, 23
               

               
Conread position:
               
330-480
               

               
Cow position:
               
chr28:7735901-7736053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
331-495
               

               
Cow position:
               
chr28:9279591-9279754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
346-536
               

               
Cow position:
               
chr28:9246348-9246538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
10, 5
               

               
Conread position:
               
359-480
               

               
Cow position:
               
chr28:34689019-34689139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
637-1002
               

               
Cow position:
               
chr28:16540962-16540608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
47, 32
               

               
Conread position:
               
648-1008
               

               
Cow position:
               
chr28:23097269-23096907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
37, 21
               

               
Conread position:
               
652-1007
               

               
Cow position:
               
chr28:31177157-31176801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
33, 54
               

               
Conread position:
               
652-1008
               

               
Cow position:
               
chr28:1571341-1570990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
218, 54
               

               
Conread position:
               
730-1008
               

               
Cow position:
               
chr28:5369549-5369271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
140, 80
               

               
Conread position:
               
637-1008
               

               
Cow position:
               
chr29:19564493-19564872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
78, 9
               

               
Conread position:
               
648-1008
               

               
Cow position:
               
chr29:40137112-40137471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
221, 19
               

               
Conread position:
               
653-856
               

               
Cow position:
               
chr29:31836431-31836233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
653-952
               

               
Cow position:
               
chr29:37675222-37675524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
217, 37
               

               
Conread position:
               
715-991
               

               
Cow position:
               
chr29:12884135-12883853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
27, 23
               

               
Conread position:
               
820-1008
               

               
Cow position:
               
chr29:20625836-20625643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
37, 134
               

               
Conread position:
               
347-480
               

               
Cow position:
               
chr3:68022140-68022273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
356-480
               

               
Cow position:
               
chr3:68040911-68041035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
574-1001
               

               
Cow position:
               
chr3:76157796-76157366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
13, 18
               

               
Conread position:
               
637-978
               

               
Cow position:
               
chr3:65922867-65922530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
98, 11
               

               
Conread position:
               
637-1008
               

               
Cow position:
               
chr3:23229606-23229981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
40, 11
               

               
Conread position:
               
638-1008
               

               
Cow position:
               
chr3:14521443-14521081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
231, 41
               

               
Conread position:
               
648-947
               

               
Cow position:
               
chr3:44444773-44445078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
15, 84
               

               
Conread position:
               
648-1008
               

               
Cow position:
               
chr3:80595228-80594871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
76, 36
               

               
Conread position:
               
653-1001
               

               
Cow position:
               
chr3:70095012-70095358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
54, 8
               

               
Conread position:
               
653-1008
               

               
Cow position:
               
chr3:18394021-18394371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
40, 25
               

               
Conread position:
               
712-1008
               

               
Cow position:
               
chr3:48998136-48997836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
171, 75
               

               
Conread position:
               
714-1008
               

               
Cow position:
               
chr3:71478993-71479290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
27, 70
               

               
Conread position:
               
715-1003
               

               
Cow position:
               
chr3:41479412-41479120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
155, 45
               

               
Conread position:
               
739-1008
               

               
Cow position:
               
chr3:16614711-16614440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
25, 87
               

               
Conread position:
               
739-1008
               

               
Cow position:
               
chr3:70701898-70701622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
128, 224
               

               
Conread position:
               
741-1001
               

               
Cow position:
               
chr3:23920750-23921007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
159, 72
               

               
Conread position:
               
744-1008
               

               
Cow position:
               
chr3:80308259-80307993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
126, 38
               

               
Conread position:
               
746-1007
               

               
Cow position:
               
chr3:55387241-55386978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
77, 14
               

               
Conread position:
               
746-1008
               

               
Cow position:
               
chr3:17885579-17885310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
123, 221
               

               
Conread position:
               
766-1008
               

               
Cow position:
               
chr3:78933230-78933481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
102, 59
               

               
Conread position:
               
768-1006
               

               
Cow position:
               
chr3:41854563-41854794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
203, 79
               

               
Conread position:
               
804-1007
               

               
Cow position:
               
chr3:42893500-42893708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
11, 69
               

               
Conread position:
               
648-1008
               

               
Cow position:
               
chr4:27723362-27723714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
59, 21
               

               
Conread position:
               
652-1008
               

               
Cow position:
               
chr4:23888246-23888599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
217, 59
               

               
Conread position:
               
699-1008
               

               
Cow position:
               
chr4:44061938-44062263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
12, 27
               

               
Conread position:
               
722-1007
               

               
Cow position:
               
chr4:33442658-33442947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
144, 135
               

               
Conread position:
               
723-1008
               

               
Cow position:
               
chr4:35121158-35121444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
145, 16
               

               
Conread position:
               
766-1008
               

               
Cow position:
               
chr4:49032496-49032252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
103, 181
               

               
Conread position:
               
520-1000
               

               
Cow position:
               
chr5:27898952-27899430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
103, 6
               

               
Conread position:
               
572-1008
               

               
Cow position:
               
chr5:24345077-24345498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
45, 97
               

               
Conread position:
               
573-1008
               

               
Cow position:
               
chr5:45601644-45602079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
22, 10
               

               
Conread position:
               
637-1006
               

               
Cow position:
               
chr5:41629779-41629406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
24, 93
               

               
Conread position:
               
647-1008
               

               
Cow position:
               
chr5:62278787-62278432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
190, 22
               

               
Conread position:
               
648-1003
               

               
Cow position:
               
chr5:31008600-31008255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
29, 19
               

               
Conread position:
               
648-1003
               

               
Cow position:
               
chr5:41517252-41517600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
36, 26
               

               
Conread position:
               
652-1000
               

               
Cow position:
               
chr5:18551103-18550773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
57, 41
               

               
Conread position:
               
652-1008
               

               
Cow position:
               
chr5:5880713-5881072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
218, 52
               

               
Conread position:
               
653-1008
               

               
Cow position:
               
chr5:66983517-66983159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
123, 16
               

               
Conread position:
               
701-1000
               

               
Cow position:
               
chr5:42135903-42135600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
15, 54
               

               
Conread position:
               
713-1008
               

               
Cow position:
               
chr5:58526026-58526318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
53, 19
               

               
Conread position:
               
738-1008
               

               
Cow position:
               
chr5:7066296-7066019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
31, 222
               

               
Conread position:
               
824-1006
               

               
Cow position:
               
chr5:14668790-14668602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
47, 142
               

               
Conread position:
               
345-480
               

               
Cow position:
               
chr6:49358203-49358338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
53, 59
               

               
Conread position:
               
347-476
               

               
Cow position:
               
chr6:33795577-33795448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
347-480
               

               
Cow position:
               
chr6:49419712-49419845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
353-482
               

               
Cow position:
               
chr6:49387735-49387864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
573-1008
               

               
Cow position:
               
chr6:17489253-17489690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
44, 133
               

               
Conread position:
               
653-990
               

               
Cow position:
               
chr6:36466690-36467033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
22, 31
               

               
Conread position:
               
685-950
               

               
Cow position:
               
chr6:41317036-41317302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
184, 27
               

               
Conread position:
               
729-1000
               

               
Cow position:
               
chr6:66515219-66514948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
141, 53
               

               
Conread position:
               
732-1007
               

               
Cow position:
               
chr6:58450274-58450547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
37, 73
               

               
Conread position:
               
742-1006
               

               
Cow position:
               
chr6:16430460-16430732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
5, 226
               

               
Conread position:
               
340-480
               

               
Cow position:
               
chr7:18387045-18387185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
346-480
               

               
Cow position:
               
chr7:42881428-42881294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
346-497
               

               
Cow position:
               
chr7:3169587-3169736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
355-481
               

               
Cow position:
               
chr7:11488099-11488225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
637-1008
               

               
Cow position:
               
chr7:29372663-29373023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
48, 37
               

               
Conread position:
               
638-1007
               

               
Cow position:
               
chr7:65155647-65156010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
45, 7
               

               
Conread position:
               
642-1008
               

               
Cow position:
               
chr7:34141860-34141499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
197, 25
               

               
Conread position:
               
694-1007
               

               
Cow position:
               
chr7:32377671-32377352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
25, 53
               

               
Conread position:
               
705-1008
               

               
Cow position:
               
chr7:26057328-26057638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
32, 43
               

               
Conread position:
               
725-1003
               

               
Cow position:
               
chr7:13456758-13457036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
144, 98
               

               
Conread position:
               
729-1008
               

               
Cow position:
               
chr7:2097338-2097618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
146, 53
               

               
Conread position:
               
734-1007
               

               
Cow position:
               
chr7:48127461-48127182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
128, 65
               

               
Conread position:
               
735-1008
               

               
Cow position:
               
chr7:36242195-36241927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
203, 115
               

               
Conread position:
               
739-1008
               

               
Cow position:
               
chr7:6173704-6173433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
31, 139
               

               
Conread position:
               
744-1008
               

               
Cow position:
               
chr7:26702638-26702370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
125, 215
               

               
Conread position:
               
791-1008
               

               
Cow position:
               
chr7:35284929-35285154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
30, 178
               

               
Conread position:
               
19-296
               

               
Cow position:
               
chr8:45123150-45123429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 66
               

               
Conread position:
               
346-480
               

               
Cow position:
               
chr8:53250821-53250955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
346-487
               

               
Cow position:
               
chr8:46808937-46809078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
346-1008
               

               
Cow position:
               
chr8:45148252-45148904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
670
               

               
Alignm identity:
               
545
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 244
               

               
Conread position:
               
637-1005
               

               
Cow position:
               
chr8:11667239-11667607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
56, 11
               

               
Conread position:
               
637-1006
               

               
Cow position:
               
chr8:18568735-18569103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
26, 11
               

               
Conread position:
               
647-1006
               

               
Cow position:
               
chr8:40710147-40709798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
225, 22
               

               
Conread position:
               
648-1008
               

               
Cow position:
               
chr8:32114248-32113892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
13, 63
               

               
Conread position:
               
652-1008
               

               
Cow position:
               
chr8:14358524-14358174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
90, 16
               

               
Conread position:
               
654-1007
               

               
Cow position:
               
chr8:46538200-46538559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
185, 51
               

               
Conread position:
               
707-1008
               

               
Cow position:
               
chr8:46569825-46569519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
10, 43
               

               
Conread position:
               
728-1008
               

               
Cow position:
               
chr8:45040321-45040035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
8, 60
               

               
Conread position:
               
782-1008
               

               
Cow position:
               
chr8:47650971-47651201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
652-935
               

               
Cow position:
               
chr9:5867786-5868070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
55, 15
               

               
Conread position:
               
702-1008
               

               
Cow position:
               
chr9:36652756-36653069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
81, 69
               

               
Conread position:
               
706-1006
               

               
Cow position:
               
chr9:50345040-50344736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
163, 9
               

               
Conread position:
               
725-1008
               

               
Cow position:
               
chr9:32582812-32582524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
144, 114
               

               
Conread position:
               
740-1008
               

               
Cow position:
               
chr9:49963264-49963534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
75, 86
               

               
Conread position:
               
766-1006
               

               
Cow position:
               
chr9:19069382-19069138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
103, 137
               

               
Conread position:
               
346-480
               

               
Cow position:
               
chrX:25307057-25307191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
346-480
               

               
Cow position:
               
chrX:29072746-29072612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
347-487
               

               
Cow position:
               
chrX:29040693-29040833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
355-514
               

               
Cow position:
               
chrX:25336771-25336612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
143, 133
               

               
Conread position:
               
519-1008
               

               
Cow position:
               
chrX:24738257-24737763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
79, 20
               

               
Conread position:
               
531-1008
               

               
Cow position:
               
chrX:27418830-27419307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
85, 19
               

               
Conread position:
               
557-1003
               

               
Cow position:
               
chrX:35540168-35539731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
38, 33
               

               
Conread position:
               
637-975
               

               
Cow position:
               
chrX:873996-873655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
78, 87
               

               
Conread position:
               
637-1008
               

               
Cow position:
               
chrX:32815450-32815816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
68, 30
               

               
Conread position:
               
640-1007
               

               
Cow position:
               
chrX:39288126-39288492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
37, 27
               

               
Conread position:
               
652-1008
               

               
Cow position:
               
chrX:33004286-33003931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
211, 10
               

               
Conread position:
               
654-1008
               

               
Cow position:
               
chrX:16776367-16776023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
216, 41
               

               
Conread position:
               
661-1008
               

               
Cow position:
               
chrX:18646443-18646790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
8, 60
               

               
Conread position:
               
664-1003
               

               
Cow position:
               
chrX:7705246-7704909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
26, 49
               

               
Conread position:
               
687-996
               

               
Cow position:
               
chrX:11893167-11892855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
40, 11
               

               
Conread position:
               
702-1008
               

               
Cow position:
               
chrX:31955254-31955569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
14, 30
               

               
Conread position:
               
703-1008
               

               
Cow position:
               
chrX:31460818-31460508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
13, 65
               

               
Conread position:
               
705-1008
               

               
Cow position:
               
chrX:17968862-17969174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
22, 121
               

               
Conread position:
               
721-1007
               

               
Cow position:
               
chrX:23268216-23268508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
92, 103
               

               
Conread position:
               
724-1008
               

               
Cow position:
               
chrX:165857-165566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
89, 101
               

               
Conread position:
               
725-1008
               

               
Cow position:
               
chrX:33171994-33172283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
67, 79
               

               
Conread position:
               
730-1008
               

               
Cow position:
               
chrX:23819274-23819550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
51, 34
               

               
Conread position:
               
739-1008
               

               
Cow position:
               
chrX:40517529-40517267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
123, 111
               

               
Conread position:
               
740-934
               

               
Cow position:
               
chrX:25333069-25332871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
122, 42
               

               
Conread position:
               
742-1008
               

               
Cow position:
               
chrX:20834470-20834740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
128, 40
               

               
Conread position:
               
761-1008
               

               
Cow position:
               
chrX:4502454-4502196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
25, 232
               

               
Conread position:
               
767-1008
               

               
Cow position:
               
chrX:35694966-35694720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
20, 13
               

               
Conread position:
               
773-1008
               

               
Cow position:
               
chrX:25039504-25039262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
10, 208
               

               
Conread position:
               
782-1008
               

               
Cow position:
               
chrX:4664709-4664942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
41, 31
               

               
Conread position:
               
819-1005
               

               
Cow position:
               
chrX:3794120-3793927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
50, 151