Cow genome map
| Conread name: | Ss1.1-Pla1-C0000936_J09.5 |
| Conread position: | 282-523 |
| Cow position: | chr10:22287170-22286925 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 124, 31 |
| Conread position: | 162-480 |
| Cow position: | chr11:22998771-22998455 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 112, 8 |
| Conread position: | 318-523 |
| Cow position: | chr11:55082051-55081840 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 13, 181 |
| Conread position: | 275-528 |
| Cow position: | chr12:12264712-12264447 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 159-454 |
| Cow position: | chr13:33587320-33587624 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 277-465 |
| Cow position: | chr14:44994981-44995170 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 132 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 46, 75 |
| Conread position: | 324-528 |
| Cow position: | chr14:23270945-23271153 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 83, 35 |
| Conread position: | 349-528 |
| Cow position: | chr14:20469095-20468912 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 131 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 58, 9 |
| Conread position: | 344-501 |
| Cow position: | chr16:54457334-54457488 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 228-520 |
| Cow position: | chr17:42349415-42349712 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 65, 261 |
| Conread position: | 295-506 |
| Cow position: | chr17:30151009-30151224 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 146 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 26, 192 |
| Conread position: | 168-528 |
| Cow position: | chr18:3962098-3962472 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 242 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 32, 51 |
| Conread position: | 313-525 |
| Cow position: | chr19:7216066-7216284 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 146 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 296-510 |
| Cow position: | chr20:26402163-26402385 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 329-527 |
| Cow position: | chr20:9269651-9269453 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 153, 20 |
| Conread position: | 170-455 |
| Cow position: | chr21:2138303-2138595 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 98, 219 |
| Conread position: | 268-451 |
| Cow position: | chr22:8696484-8696298 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 309-527 |
| Cow position: | chr22:7288425-7288200 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 278-527 |
| Cow position: | chr23:26292931-26293183 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 43, 20 |
| Conread position: | 322-520 |
| Cow position: | chr24:20289274-20289477 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 142 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 84, 162 |
| Conread position: | 276-528 |
| Cow position: | chr25:11920306-11920571 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 182 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 11, 16 |
| Conread position: | 323-527 |
| Cow position: | chr26:8265469-8265260 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 157-434 |
| Cow position: | chr28:20907573-20907847 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 191 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 14, 41 |
| Conread position: | 268-514 |
| Cow position: | chr28:11078601-11078352 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 73, 52 |
| Conread position: | 277-528 |
| Cow position: | chr28:8617666-8617912 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 59, 75 |
| Conread position: | 336-480 |
| Cow position: | chr28:26392563-26392417 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 109 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 145-472 |
| Cow position: | chr3:57877427-57877095 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 222 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 126, 40 |
| Conread position: | 154-362 |
| Cow position: | chr3:21579026-21578818 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 168-526 |
| Cow position: | chr3:80452523-80452876 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 241 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 106, 43 |
| Conread position: | 179-454 |
| Cow position: | chr3:77060880-77061164 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 43, 29 |
| Conread position: | 268-489 |
| Cow position: | chr3:61836432-61836658 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 51, 23 |
| Conread position: | 291-526 |
| Cow position: | chr3:40215431-40215184 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 277-523 |
| Cow position: | chr4:56812093-56812337 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 7, 33 |
| Conread position: | 292-528 |
| Cow position: | chr4:66460059-66460297 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 19, 126 |
| Conread position: | 161-502 |
| Cow position: | chr5:28528243-28528570 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 220 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 160, 8 |
| Conread position: | 291-520 |
| Cow position: | chr5:62278753-62278517 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 319-522 |
| Cow position: | chr5:62341875-62341669 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 161, 0 |
| Conread position: | 176-521 |
| Cow position: | chr8:11292445-11292797 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 98, 160 |
| Conread position: | 190-501 |
| Cow position: | chrX:25134109-25134415 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 72, 31 |
| Conread position: | 277-528 |
| Cow position: | chrX:33171945-33172201 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 59, 144 |
| Conread position: | 292-528 |
| Cow position: | chrX:28665970-28666213 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 37, 22 |
| Conread position: | 295-522 |
| Cow position: | chrX:27418990-27419218 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 41, 144 |
| Conread position: | 319-527 |
| Cow position: | chrX:11713323-11713537 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 329-527 |
| Cow position: | chrX:23876157-23876360 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 78, 0 |