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Cow genome map

           
Conread name:
           
Ss1.1-Spl1-SPL010001G10.5
        

               
Conread position:
               
1213-1649
               

               
Cow position:
               
chr1:24073934-24073522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
23, 66
               

               
Conread position:
               
1235-1648
               

               
Cow position:
               
chr1:61693159-61693576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
23, 96
               

               
Conread position:
               
1242-1584
               

               
Cow position:
               
chr1:90360413-90360765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
15, 154
               

               
Conread position:
               
1245-1584
               

               
Cow position:
               
chr1:49517808-49518148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
25, 145
               

               
Conread position:
               
1246-1649
               

               
Cow position:
               
chr1:85609773-85610190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
13, 145
               

               
Conread position:
               
1254-1632
               

               
Cow position:
               
chr1:34246759-34247142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
10, 42
               

               
Conread position:
               
1275-1587
               

               
Cow position:
               
chr1:22072976-22072662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
14, 63
               

               
Conread position:
               
1282-1639
               

               
Cow position:
               
chr1:60107260-60106914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
94, 57
               

               
Conread position:
               
1300-1639
               

               
Cow position:
               
chr1:72550385-72550730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
113, 36
               

               
Conread position:
               
1303-1653
               

               
Cow position:
               
chr1:80669630-80669288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
170, 60
               

               
Conread position:
               
1321-1648
               

               
Cow position:
               
chr1:83228972-83228649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
159, 48
               

               
Conread position:
               
1335-1639
               

               
Cow position:
               
chr1:92964514-92964206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
123, 107
               

               
Conread position:
               
1339-1657
               

               
Cow position:
               
chr1:86519270-86519589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
100, 48
               

               
Conread position:
               
1349-1649
               

               
Cow position:
               
chr1:14247580-14247870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
75, 44
               

               
Conread position:
               
1362-1649
               

               
Cow position:
               
chr1:77378760-77379056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
85, 45
               

               
Conread position:
               
1368-1631
               

               
Cow position:
               
chr1:3435189-3434928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
131, 25
               

               
Conread position:
               
1401-1648
               

               
Cow position:
               
chr1:41107490-41107240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
38, 23
               

               
Conread position:
               
1502-1640
               

               
Cow position:
               
chr1:7352086-7351946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
1235-1431
               

               
Cow position:
               
chr10:14955159-14955357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
22, 114
               

               
Conread position:
               
1235-1626
               

               
Cow position:
               
chr10:10232418-10232819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
21, 81
               

               
Conread position:
               
1236-1558
               

               
Cow position:
               
chr10:31045845-31046166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
34, 152
               

               
Conread position:
               
1270-1556
               

               
Cow position:
               
chr10:23689344-23689633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
106, 47
               

               
Conread position:
               
1275-1640
               

               
Cow position:
               
chr10:64730726-64730356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
14, 40
               

               
Conread position:
               
1276-1465
               

               
Cow position:
               
chr10:47058375-47058187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
24, 60
               

               
Conread position:
               
1295-1581
               

               
Cow position:
               
chr10:64906530-64906249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
190, 89
               

               
Conread position:
               
1299-1576
               

               
Cow position:
               
chr10:46416667-46416386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
152, 80
               

               
Conread position:
               
1299-1583
               

               
Cow position:
               
chr10:8244092-8244383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
134, 52
               

               
Conread position:
               
1307-1636
               

               
Cow position:
               
chr10:2338695-2338376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
72, 64
               

               
Conread position:
               
1325-1637
               

               
Cow position:
               
chr10:54132306-54132633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
88, 178
               

               
Conread position:
               
1468-1637
               

               
Cow position:
               
chr10:60927532-60927364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
33, 73
               

               
Conread position:
               
1471-1640
               

               
Cow position:
               
chr10:29096621-29096792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
29, 162
               

               
Conread position:
               
1499-1649
               

               
Cow position:
               
chr10:48304708-48304857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
1500-1649
               

               
Cow position:
               
chr10:23266526-23266678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
1227-1582
               

               
Cow position:
               
chr11:61587763-61588118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
33, 134
               

               
Conread position:
               
1235-1649
               

               
Cow position:
               
chr11:77610280-77609857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
29, 42
               

               
Conread position:
               
1275-1588
               

               
Cow position:
               
chr11:55361961-55361647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
21, 108
               

               
Conread position:
               
1288-1584
               

               
Cow position:
               
chr11:15527948-15527652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
126, 30
               

               
Conread position:
               
1334-1636
               

               
Cow position:
               
chr11:5354449-5354749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
93, 18
               

               
Conread position:
               
1471-1647
               

               
Cow position:
               
chr11:59704877-59705054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
1235-1648
               

               
Cow position:
               
chr12:9090107-9090534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
37, 154
               

               
Conread position:
               
1320-1649
               

               
Cow position:
               
chr12:40160320-40159987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
138, 67
               

               
Conread position:
               
1339-1655
               

               
Cow position:
               
chr12:13884704-13884393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
77, 46
               

               
Conread position:
               
1269-1584
               

               
Cow position:
               
chr13:58727271-58727585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
22, 120
               

               
Conread position:
               
1271-1649
               

               
Cow position:
               
chr13:26025904-26026272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
57, 96
               

               
Conread position:
               
1275-1573
               

               
Cow position:
               
chr13:58822286-58822582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
21, 114
               

               
Conread position:
               
1278-1570
               

               
Cow position:
               
chr13:34882785-34883085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
146, 40
               

               
Conread position:
               
1305-1576
               

               
Cow position:
               
chr13:20499859-20499598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
42, 7
               

               
Conread position:
               
1202-1639
               

               
Cow position:
               
chr14:41198293-41198757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
40, 23
               

               
Conread position:
               
1233-1649
               

               
Cow position:
               
chr14:37133129-37132717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
23, 52
               

               
Conread position:
               
1285-1648
               

               
Cow position:
               
chr14:9230844-9231210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
91, 95
               

               
Conread position:
               
1286-1579
               

               
Cow position:
               
chr14:28602553-28602259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
177, 53
               

               
Conread position:
               
1303-1650
               

               
Cow position:
               
chr14:14471664-14471317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
189, 84
               

               
Conread position:
               
1478-1640
               

               
Cow position:
               
chr14:39927274-39927438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
22, 59
               

               
Conread position:
               
1514-1661
               

               
Cow position:
               
chr14:46507039-46506889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
14, 70
               

               
Conread position:
               
1244-1554
               

               
Cow position:
               
chr15:7404809-7405130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
28, 95
               

               
Conread position:
               
1252-1636
               

               
Cow position:
               
chr15:37949968-37950356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
18, 134
               

               
Conread position:
               
1275-1412
               

               
Cow position:
               
chr15:15643076-15642938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
14, 115
               

               
Conread position:
               
1275-1584
               

               
Cow position:
               
chr15:29925995-29926312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
163, 79
               

               
Conread position:
               
1509-1649
               

               
Cow position:
               
chr15:3685296-3685155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
1230-1649
               

               
Cow position:
               
chr16:48889272-48888852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
186, 48
               

               
Conread position:
               
1253-1584
               

               
Cow position:
               
chr16:36289918-36289587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
13, 83
               

               
Conread position:
               
1271-1648
               

               
Cow position:
               
chr16:12429781-12429409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
153, 17
               

               
Conread position:
               
1275-1587
               

               
Cow position:
               
chr16:46651946-46652257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 24
               

               
Conread position:
               
1278-1571
               

               
Cow position:
               
chr16:31257313-31257611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
23, 36
               

               
Conread position:
               
1293-1572
               

               
Cow position:
               
chr16:53410849-53410581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
195, 94
               

               
Conread position:
               
1354-1649
               

               
Cow position:
               
chr16:53210352-53210049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
51, 33
               

               
Conread position:
               
1510-1640
               

               
Cow position:
               
chr16:19055942-19056072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
70, 21
               

               
Conread position:
               
1229-1562
               

               
Cow position:
               
chr17:21361556-21361890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
35, 113
               

               
Conread position:
               
1241-1636
               

               
Cow position:
               
chr17:39986067-39986481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
69, 61
               

               
Conread position:
               
1244-1419
               

               
Cow position:
               
chr17:25357514-25357691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
1249-1448
               

               
Cow position:
               
chr17:37150303-37150502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
184, 173
               

               
Conread position:
               
1254-1647
               

               
Cow position:
               
chr17:25599290-25598915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
15, 29
               

               
Conread position:
               
1271-1576
               

               
Cow position:
               
chr17:7380806-7381115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
27, 90
               

               
Conread position:
               
1279-1585
               

               
Cow position:
               
chr17:27318888-27318588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
16, 110
               

               
Conread position:
               
1295-1584
               

               
Cow position:
               
chr17:35128732-35129030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
135, 98
               

               
Conread position:
               
1311-1639
               

               
Cow position:
               
chr17:10038145-10038469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
8, 77
               

               
Conread position:
               
1312-1576
               

               
Cow position:
               
chr17:33534010-33534281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
98, 204
               

               
Conread position:
               
1336-1649
               

               
Cow position:
               
chr17:33445710-33446027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
134, 79
               

               
Conread position:
               
1362-1582
               

               
Cow position:
               
chr17:34713598-34713374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
54, 171
               

               
Conread position:
               
1499-1649
               

               
Cow position:
               
chr17:37423299-37423143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
89, 133
               

               
Conread position:
               
1509-1647
               

               
Cow position:
               
chr17:37399783-37399923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
1235-1650
               

               
Cow position:
               
chr18:8358620-8358200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
29, 153
               

               
Conread position:
               
1241-1640
               

               
Cow position:
               
chr18:10761156-10760777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
25, 98
               

               
Conread position:
               
1246-1431
               

               
Cow position:
               
chr18:45944440-45944625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
18, 30
               

               
Conread position:
               
1246-1648
               

               
Cow position:
               
chr18:8756200-8755800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
181, 46
               

               
Conread position:
               
1254-1649
               

               
Cow position:
               
chr18:16112971-16113375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
57, 81
               

               
Conread position:
               
1260-1422
               

               
Cow position:
               
chr18:38364244-38364085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
1269-1649
               

               
Cow position:
               
chr18:10675525-10675883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
29, 115
               

               
Conread position:
               
1276-1574
               

               
Cow position:
               
chr18:16804409-16804108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
22, 113
               

               
Conread position:
               
1288-1649
               

               
Cow position:
               
chr18:23000762-23001120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
139, 32
               

               
Conread position:
               
1312-1651
               

               
Cow position:
               
chr18:42157654-42157985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
124, 61
               

               
Conread position:
               
1320-1649
               

               
Cow position:
               
chr18:45794691-45794367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
138, 94
               

               
Conread position:
               
1325-1638
               

               
Cow position:
               
chr18:17385749-17385446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
108, 55
               

               
Conread position:
               
1349-1632
               

               
Cow position:
               
chr18:9590222-9590508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
79, 8
               

               
Conread position:
               
1356-1649
               

               
Cow position:
               
chr18:29465171-29465474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
68, 209
               

               
Conread position:
               
1468-1638
               

               
Cow position:
               
chr18:30785059-30785231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
1469-1648
               

               
Cow position:
               
chr18:6652010-6652188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
30, 16
               

               
Conread position:
               
1471-1632
               

               
Cow position:
               
chr18:49042382-49042550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
1471-1649
               

               
Cow position:
               
chr18:56333580-56333760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
33, 177
               

               
Conread position:
               
1471-1651
               

               
Cow position:
               
chr18:55344154-55344335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
28, 105
               

               
Conread position:
               
1477-1649
               

               
Cow position:
               
chr18:28595918-28596089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
12, 55
               

               
Conread position:
               
1499-1649
               

               
Cow position:
               
chr18:2260378-2260226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
1500-1647
               

               
Cow position:
               
chr18:50743303-50743450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
60, 91
               

               
Conread position:
               
169-406
               

               
Cow position:
               
chr19:51788236-51788473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
42, 47
               

               
Conread position:
               
176-408
               

               
Cow position:
               
chr19:51960985-51961217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
173, 194
               

               
Conread position:
               
193-407
               

               
Cow position:
               
chr19:52141551-52141765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
157, 177
               

               
Conread position:
               
533-634
               

               
Cow position:
               
chr19:51963976-51964077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
102
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
802-1057
               

               
Cow position:
               
chr19:51967342-51967602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
168, 37
               

               
Conread position:
               
1068-1242
               

               
Cow position:
               
chr19:51967648-51967829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
1230-1638
               

               
Cow position:
               
chr19:51968030-51968441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 83
               

               
Conread position:
               
1240-1597
               

               
Cow position:
               
chr19:40394493-40394855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
15, 91
               

               
Conread position:
               
1241-1431
               

               
Cow position:
               
chr19:27738-27545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
17, 100
               

               
Conread position:
               
1245-1629
               

               
Cow position:
               
chr19:10109764-10109372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
25, 156
               

               
Conread position:
               
1269-1650
               

               
Cow position:
               
chr19:7302583-7302961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
20, 45
               

               
Conread position:
               
1275-1649
               

               
Cow position:
               
chr19:9566760-9567154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
42, 89
               

               
Conread position:
               
1275-1649
               

               
Cow position:
               
chr19:21263068-21262694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
62, 126
               

               
Conread position:
               
1334-1543
               

               
Cow position:
               
chr19:28936590-28936802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
84, 5
               

               
Conread position:
               
1337-1587
               

               
Cow position:
               
chr19:48936017-48936270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
10, 43
               

               
Conread position:
               
1338-1583
               

               
Cow position:
               
chr19:11801482-11801234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
80, 40
               

               
Conread position:
               
1339-1639
               

               
Cow position:
               
chr19:44202052-44201744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
85, 10
               

               
Conread position:
               
1356-1649
               

               
Cow position:
               
chr19:42213422-42213135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
73, 30
               

               
Conread position:
               
1214-1649
               

               
Cow position:
               
chr2:59911456-59911892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
56, 44
               

               
Conread position:
               
1245-1649
               

               
Cow position:
               
chr2:38776738-38776321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
32, 24
               

               
Conread position:
               
1274-1640
               

               
Cow position:
               
chr2:6923904-6923549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
291, 149
               

               
Conread position:
               
1275-1566
               

               
Cow position:
               
chr2:81382198-81381908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
162, 82
               

               
Conread position:
               
1275-1650
               

               
Cow position:
               
chr2:60219066-60219448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
21, 120
               

               
Conread position:
               
1276-1648
               

               
Cow position:
               
chr2:65362716-65363079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
22, 113
               

               
Conread position:
               
1320-1640
               

               
Cow position:
               
chr2:74289521-74289855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
96, 67
               

               
Conread position:
               
1339-1621
               

               
Cow position:
               
chr2:65337486-65337200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
98, 48
               

               
Conread position:
               
1345-1653
               

               
Cow position:
               
chr2:33124196-33124515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
91, 42
               

               
Conread position:
               
1501-1642
               

               
Cow position:
               
chr2:33729412-33729556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
1227-1639
               

               
Cow position:
               
chr20:37386282-37386685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
19, 196
               

               
Conread position:
               
1236-1649
               

               
Cow position:
               
chr20:24124219-24124633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
35, 21
               

               
Conread position:
               
1240-1649
               

               
Cow position:
               
chr20:5111950-5112363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
27, 59
               

               
Conread position:
               
1269-1571
               

               
Cow position:
               
chr20:32593187-32593483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
7, 45
               

               
Conread position:
               
1275-1422
               

               
Cow position:
               
chr20:13402487-13402633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
1275-1649
               

               
Cow position:
               
chr20:2161092-2160714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
46, 120
               

               
Conread position:
               
1305-1612
               

               
Cow position:
               
chr20:2898880-2899190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
33, 47
               

               
Conread position:
               
1320-1649
               

               
Cow position:
               
chr20:26487402-26487071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
115, 104
               

               
Conread position:
               
1268-1648
               

               
Cow position:
               
chr21:23886072-23885698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 26
               

               
Conread position:
               
1276-1654
               

               
Cow position:
               
chr21:42582674-42583032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
228, 24
               

               
Conread position:
               
1339-1649
               

               
Cow position:
               
chr21:41516532-41516847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
88, 18
               

               
Conread position:
               
1342-1638
               

               
Cow position:
               
chr21:1064276-1064580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
82, 13
               

               
Conread position:
               
1500-1643
               

               
Cow position:
               
chr21:7528471-7528330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
59, 129
               

               
Conread position:
               
1279-1640
               

               
Cow position:
               
chr22:9062282-9062637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
119, 33
               

               
Conread position:
               
1293-1599
               

               
Cow position:
               
chr22:32940625-32940949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
94, 130
               

               
Conread position:
               
1498-1649
               

               
Cow position:
               
chr22:16118479-16118632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
1327-1630
               

               
Cow position:
               
chr23:9213168-9213470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
128, 30
               

               
Conread position:
               
1271-1649
               

               
Cow position:
               
chr24:37932757-37933120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
20, 63
               

               
Conread position:
               
1288-1571
               

               
Cow position:
               
chr24:22035638-22035926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
127, 99
               

               
Conread position:
               
1331-1648
               

               
Cow position:
               
chr24:38328939-38329267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
85, 172
               

               
Conread position:
               
1339-1639
               

               
Cow position:
               
chr24:41852628-41852943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
99, 10
               

               
Conread position:
               
1339-1580
               

               
Cow position:
               
chr25:28585569-28585320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
87, 112
               

               
Conread position:
               
1404-1651
               

               
Cow position:
               
chr25:23351576-23351821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
35, 10
               

               
Conread position:
               
1471-1640
               

               
Cow position:
               
chr25:7236593-7236765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
1494-1647
               

               
Cow position:
               
chr25:10422348-10422195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1499-1649
               

               
Cow position:
               
chr25:2246698-2246854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
1235-1639
               

               
Cow position:
               
chr26:8688056-8688476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
22, 43
               

               
Conread position:
               
1270-1582
               

               
Cow position:
               
chr26:13089290-13088974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
24, 119
               

               
Conread position:
               
1276-1597
               

               
Cow position:
               
chr26:29525884-29525558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
147, 116
               

               
Conread position:
               
1342-1634
               

               
Cow position:
               
chr26:34465539-34465243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
71, 16
               

               
Conread position:
               
1365-1637
               

               
Cow position:
               
chr26:20479692-20479414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
61, 245
               

               
Conread position:
               
1236-1640
               

               
Cow position:
               
chr27:9951402-9950999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
24, 88
               

               
Conread position:
               
1320-1649
               

               
Cow position:
               
chr27:17330534-17330205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
94, 67
               

               
Conread position:
               
1218-1428
               

               
Cow position:
               
chr28:5148841-5148630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
46, 95
               

               
Conread position:
               
1231-1649
               

               
Cow position:
               
chr28:21448170-21448590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
5, 53
               

               
Conread position:
               
1269-1640
               

               
Cow position:
               
chr28:25974133-25974505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
158, 112
               

               
Conread position:
               
1270-1556
               

               
Cow position:
               
chr28:24369279-24368990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
106, 47
               

               
Conread position:
               
1311-1649
               

               
Cow position:
               
chr28:13869530-13869883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
121, 295
               

               
Conread position:
               
1241-1584
               

               
Cow position:
               
chr29:38625830-38625484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
16, 155
               

               
Conread position:
               
1271-1649
               

               
Cow position:
               
chr29:20658675-20659055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
132, 84
               

               
Conread position:
               
1283-1601
               

               
Cow position:
               
chr29:33631316-33631636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
73, 183
               

               
Conread position:
               
1295-1656
               

               
Cow position:
               
chr29:12166657-12167023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
138, 84
               

               
Conread position:
               
1303-1600
               

               
Cow position:
               
chr29:38255849-38255552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
121, 15
               

               
Conread position:
               
1339-1639
               

               
Cow position:
               
chr29:19509787-19509489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
82, 129
               

               
Conread position:
               
1344-1616
               

               
Cow position:
               
chr29:32201697-32201416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
93, 43
               

               
Conread position:
               
1511-1639
               

               
Cow position:
               
chr29:41016024-41016151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
1217-1648
               

               
Cow position:
               
chr3:72129231-72129657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
203, 49
               

               
Conread position:
               
1236-1637
               

               
Cow position:
               
chr3:59495698-59495295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
24, 78
               

               
Conread position:
               
1241-1649
               

               
Cow position:
               
chr3:74775776-74775371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
32, 80
               

               
Conread position:
               
1245-1649
               

               
Cow position:
               
chr3:40140646-40140240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
25, 137
               

               
Conread position:
               
1275-1634
               

               
Cow position:
               
chr3:53156242-53156603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
47, 26
               

               
Conread position:
               
1275-1639
               

               
Cow position:
               
chr3:79053090-79053449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
225, 37
               

               
Conread position:
               
1275-1649
               

               
Cow position:
               
chr3:15403660-15403280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
136, 37
               

               
Conread position:
               
1282-1578
               

               
Cow position:
               
chr3:55124749-55125053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
142, 117
               

               
Conread position:
               
1311-1583
               

               
Cow position:
               
chr3:69874251-69873984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
106, 77
               

               
Conread position:
               
1318-1422
               

               
Cow position:
               
chr3:40110791-40110688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
105
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
1327-1639
               

               
Cow position:
               
chr3:74257470-74257786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
6, 89
               

               
Conread position:
               
1330-1640
               

               
Cow position:
               
chr3:64842841-64842524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
118, 63
               

               
Conread position:
               
1339-1626
               

               
Cow position:
               
chr3:64746010-64746299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
75, 52
               

               
Conread position:
               
1353-1647
               

               
Cow position:
               
chr3:18707129-18706825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
71, 222
               

               
Conread position:
               
1412-1636
               

               
Cow position:
               
chr3:72777704-72777929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
55, 12
               

               
Conread position:
               
1470-1649
               

               
Cow position:
               
chr3:17601416-17601235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
1232-1559
               

               
Cow position:
               
chr4:38720280-38719949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
59, 27
               

               
Conread position:
               
1235-1603
               

               
Cow position:
               
chr4:34930696-34930334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
22, 51
               

               
Conread position:
               
1235-1649
               

               
Cow position:
               
chr4:7253107-7253525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
200, 77
               

               
Conread position:
               
1271-1640
               

               
Cow position:
               
chr4:49848553-49848919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
18, 71
               

               
Conread position:
               
1275-1640
               

               
Cow position:
               
chr4:33471190-33470816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
16, 44
               

               
Conread position:
               
1275-1649
               

               
Cow position:
               
chr4:2638987-2638613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
181, 15
               

               
Conread position:
               
1288-1649
               

               
Cow position:
               
chr4:19259426-19259068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
141, 99
               

               
Conread position:
               
1339-1596
               

               
Cow position:
               
chr4:12690141-12689891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
97, 48
               

               
Conread position:
               
1342-1649
               

               
Cow position:
               
chr4:38837592-38837910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
73, 15
               

               
Conread position:
               
1469-1649
               

               
Cow position:
               
chr4:37618399-37618571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
27, 100
               

               
Conread position:
               
1482-1658
               

               
Cow position:
               
chr4:38619215-38619394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
13, 22
               

               
Conread position:
               
1235-1615
               

               
Cow position:
               
chr5:2305608-2306009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
93, 77
               

               
Conread position:
               
1235-1640
               

               
Cow position:
               
chr5:32982638-32983047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
181, 77
               

               
Conread position:
               
1244-1592
               

               
Cow position:
               
chr5:69290603-69290259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
20, 32
               

               
Conread position:
               
1244-1639
               

               
Cow position:
               
chr5:24343376-24343774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
20, 101
               

               
Conread position:
               
1245-1649
               

               
Cow position:
               
chr5:21665639-21665229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
11, 142
               

               
Conread position:
               
1269-1593
               

               
Cow position:
               
chr5:72182835-72182509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
27, 120
               

               
Conread position:
               
1273-1649
               

               
Cow position:
               
chr5:19599644-19600011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
16, 40
               

               
Conread position:
               
1295-1648
               

               
Cow position:
               
chr5:29119771-29120129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
121, 71
               

               
Conread position:
               
1339-1649
               

               
Cow position:
               
chr5:53920496-53920181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
78, 48
               

               
Conread position:
               
1476-1640
               

               
Cow position:
               
chr5:46487812-46487648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
24, 65
               

               
Conread position:
               
1235-1557
               

               
Cow position:
               
chr6:36666403-36666727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
201, 35
               

               
Conread position:
               
1283-1632
               

               
Cow position:
               
chr6:15251716-15251363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
141, 29
               

               
Conread position:
               
1285-1639
               

               
Cow position:
               
chr6:49110031-49110390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
139, 161
               

               
Conread position:
               
1288-1451
               

               
Cow position:
               
chr6:30522294-30522131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
145, 96
               

               
Conread position:
               
1300-1581
               

               
Cow position:
               
chr6:41665890-41666174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
132, 55
               

               
Conread position:
               
1320-1578
               

               
Cow position:
               
chr6:39446292-39446552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
104, 137
               

               
Conread position:
               
1471-1663
               

               
Cow position:
               
chr6:59942446-59942249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
1489-1648
               

               
Cow position:
               
chr6:32799010-32799171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
1238-1609
               

               
Cow position:
               
chr7:3527145-3526771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
26, 38
               

               
Conread position:
               
1239-1621
               

               
Cow position:
               
chr7:3529859-3529475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
198, 26
               

               
Conread position:
               
1254-1584
               

               
Cow position:
               
chr7:57842942-57842607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
19, 80
               

               
Conread position:
               
1360-1567
               

               
Cow position:
               
chr7:15964569-15964787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
74, 20
               

               
Conread position:
               
1393-1648
               

               
Cow position:
               
chr7:46911129-46910872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
19, 74
               

               
Conread position:
               
1471-1649
               

               
Cow position:
               
chr7:30969490-30969309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
1240-1440
               

               
Cow position:
               
chr8:44828506-44828308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
30, 25
               

               
Conread position:
               
1244-1639
               

               
Cow position:
               
chr8:35772831-35772450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
285, 22
               

               
Conread position:
               
1244-1648
               

               
Cow position:
               
chr8:53002450-53002037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
20, 32
               

               
Conread position:
               
1269-1637
               

               
Cow position:
               
chr8:58575983-58575612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
165, 154
               

               
Conread position:
               
1271-1431
               

               
Cow position:
               
chr8:57059953-57060113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
29, 117
               

               
Conread position:
               
1272-1589
               

               
Cow position:
               
chr8:53515544-53515866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
26, 12
               

               
Conread position:
               
1296-1639
               

               
Cow position:
               
chr8:29535807-29535459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
27, 16
               

               
Conread position:
               
1303-1649
               

               
Cow position:
               
chr8:49249299-49248962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
124, 30
               

               
Conread position:
               
1327-1578
               

               
Cow position:
               
chr8:20618981-20618734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
97, 109
               

               
Conread position:
               
1335-1643
               

               
Cow position:
               
chr8:28421576-28421277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
207, 52
               

               
Conread position:
               
1406-1643
               

               
Cow position:
               
chr8:61158546-61158307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
46, 60
               

               
Conread position:
               
1241-1639
               

               
Cow position:
               
chr9:14203185-14203592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
21, 35
               

               
Conread position:
               
1241-1639
               

               
Cow position:
               
chr9:59398837-59398435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
14, 66
               

               
Conread position:
               
1269-1649
               

               
Cow position:
               
chr9:14370383-14370012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
216, 65
               

               
Conread position:
               
1271-1649
               

               
Cow position:
               
chr9:36999330-36998968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
21, 88
               

               
Conread position:
               
1230-1576
               

               
Cow position:
               
chrX:9268652-9268294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
34, 163
               

               
Conread position:
               
1234-1648
               

               
Cow position:
               
chrX:11907037-11906608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
30, 268
               

               
Conread position:
               
1241-1649
               

               
Cow position:
               
chrX:42266727-42267126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
31, 42
               

               
Conread position:
               
1268-1640
               

               
Cow position:
               
chrX:11328573-11328219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
22, 43
               

               
Conread position:
               
1269-1600
               

               
Cow position:
               
chrX:32758386-32758049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
60, 123
               

               
Conread position:
               
1279-1608
               

               
Cow position:
               
chrX:25174056-25173721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
12, 29
               

               
Conread position:
               
1301-1576
               

               
Cow position:
               
chrX:41930659-41930924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
193, 86
               

               
Conread position:
               
1325-1575
               

               
Cow position:
               
chrX:27959587-27959836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
127, 62
               

               
Conread position:
               
1327-1639
               

               
Cow position:
               
chrX:30917776-30917470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
102, 55
               

               
Conread position:
               
1343-1644
               

               
Cow position:
               
chrX:41389861-41390162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
93, 43
               

               
Conread position:
               
1350-1639
               

               
Cow position:
               
chrX:30930077-30930371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
74, 50