Cow genome map

Conread name: Ss1.1-Thy1-THY010012H06.5

Conread position: 241-528
Cow position: chr19:33974138-33974420 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 186
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 13, 94

Conread position: 279-523
Cow position: chr19:33814845-33815095 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 174
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 55, 133

Conread position: 348-512
Cow position: chr19:33829406-33829573 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 120
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 52, 0

Conread position: 396-528
Cow position: chr19:33898622-33898754 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 115
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 396-528
Cow position: chr19:33911294-33911426 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 102
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 396-528
Cow position: chr19:33927624-33927756 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 108
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 399-492
Cow position: chr19:33695751-33695844 (view UCSC Genome Browser custom track)
Alignm length: 94
Alignm identity: 80
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 676-846
Cow position: chr19:33975611-33975780 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 133
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 163, 0

Conread position: 677-840
Cow position: chr19:33816410-33816573 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 137
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 681-840
Cow position: chr19:33772631-33772790 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 136
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 0, 0

Conread position: 707-837
Cow position: chr19:33900224-33900354 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 102
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 835-989
Cow position: chr19:33832418-33832572 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 118
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 835-989
Cow position: chr19:33900604-33900758 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 111
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 835-989
Cow position: chr19:33931157-33931311 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 111
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 1117-1339
Cow position: chr19:33589462-33589683 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 158
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 7, 0

Conread position: 1124-1336
Cow position: chr19:33835696-33835908 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 144
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 1124-1341
Cow position: chr19:33710052-33710269 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 146
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 1124-1341
Cow position: chr19:33761400-33761617 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 149
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 1124-1341
Cow position: chr19:33902662-33902879 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 149
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 1124-1341
Cow position: chr19:33933282-33933499 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 143
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 1125-1336
Cow position: chr19:33976996-33977206 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 145
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 6, 0

Conread position: 1131-1338
Cow position: chr19:33774139-33774346 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 152
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 1145-1341
Cow position: chr19:33604870-33605066 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 140
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 34, 26

Conread position: 5-596
Cow position: chr23:370782-371384 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 530
Alignm E-value: 0
Alignm gaps (pig, cow): 343, 21

Conread position: 21-356
Cow position: chr23:339400-339729 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 196, 40

Conread position: 167-596
Cow position: chr23:327295-327727 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 59

Conread position: 209-596
Cow position: chr23:454337-454724 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 22

Conread position: 275-596
Cow position: chr23:441184-441509 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 269

Conread position: 283-596
Cow position: chr23:339621-339936 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 19

Conread position: 324-596
Cow position: chr23:318259-318531 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 213, 229

Conread position: 330-596
Cow position: chr23:384671-384940 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 185
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 68, 26

Conread position: 351-596
Cow position: chr23:432056-432301 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 389-596
Cow position: chr23:484698-484905 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 144
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 391-596
Cow position: chr23:597749-597954 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 146
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 18, 5

Conread position: 396-596
Cow position: chr23:472610-472811 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 141
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 13, 0

Conread position: 396-596
Cow position: chr23:547937-548138 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 142
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 13, 167

Conread position: 396-596
Cow position: chr23:581586-581787 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 137
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 13, 0

Conread position: 396-596
Cow position: chr23:621084-621285 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 142
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 13, 0

Conread position: 413-596
Cow position: chr23:516495-516678 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 131
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 106, 140

Conread position: 595-681
Cow position: chr23:328786-328872 (view UCSC Genome Browser custom track)
Alignm length: 87
Alignm identity: 79
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 595-681
Cow position: chr23:372603-372689 (view UCSC Genome Browser custom track)
Alignm length: 87
Alignm identity: 80
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 595-693
Cow position: chr23:320850-320946 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 84
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 88, 0

Conread position: 634-837
Cow position: chr23:434239-434440 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 161
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 48, 8

Conread position: 644-840
Cow position: chr23:623378-623574 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 140
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 10, 18

Conread position: 668-843
Cow position: chr23:442460-442635 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 146
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 0, 0

Conread position: 672-840
Cow position: chr23:321052-321220 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 163
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 675-840
Cow position: chr23:485982-486147 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 121
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 676-837
Cow position: chr23:340592-340753 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 137
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 0, 0

Conread position: 676-840
Cow position: chr23:373206-373370 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 159
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 677-840
Cow position: chr23:329461-329624 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 150
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 677-840
Cow position: chr23:474034-474197 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 126
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 677-840
Cow position: chr23:493753-493916 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 124
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 677-840
Cow position: chr23:548748-548911 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 122
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 677-840
Cow position: chr23:582486-582649 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 120
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 680-837
Cow position: chr23:601053-601210 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 115
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 680-840
Cow position: chr23:456232-456393 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 139
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 85, 0

Conread position: 680-842
Cow position: chr23:535861-536023 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 115
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 682-837
Cow position: chr23:517991-518146 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 112
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 835-988
Cow position: chr23:486409-486562 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 116
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 36, 40

Conread position: 835-994
Cow position: chr23:549683-549842 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 115
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 835-994
Cow position: chr23:602074-602233 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 116
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 835-994
Cow position: chr23:624714-624873 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 116
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 835-998
Cow position: chr23:322355-322518 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 159
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 835-998
Cow position: chr23:340853-341016 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 132
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 835-998
Cow position: chr23:373515-373678 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 156
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 835-998
Cow position: chr23:434743-434906 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 120
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 82, 77

Conread position: 835-998
Cow position: chr23:443110-443273 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 125
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 835-998
Cow position: chr23:456576-456739 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 124
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 835-1005
Cow position: chr23:330425-330595 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 159
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 849-994
Cow position: chr23:584150-584295 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 106
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 974-1155
Cow position: chr23:331182-331361 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 156
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 26

Conread position: 997-1124
Cow position: chr23:373760-373887 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 120
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 0, 0

Conread position: 997-1124
Cow position: chr23:435016-435143 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 101
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 997-1124
Cow position: chr23:443357-443484 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 99
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 997-1136
Cow position: chr23:323094-323233 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 116
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 1124-1333
Cow position: chr23:388448-388657 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 143
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 62, 48

Conread position: 1124-1339
Cow position: chr23:443655-443870 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 167
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 52, 46

Conread position: 1124-1339
Cow position: chr23:457048-457263 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 171
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 105

Conread position: 1124-1339
Cow position: chr23:497165-497380 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 157
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 1124-1339
Cow position: chr23:537380-537595 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 150
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 1124-1339
Cow position: chr23:562285-562500 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 159
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 1124-1339
Cow position: chr23:584690-584905 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 158
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 1124-1339
Cow position: chr23:602628-602843 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 160
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 0, 0

Conread position: 1124-1339
Cow position: chr23:625268-625483 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 157
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 1124-1345
Cow position: chr23:323468-323689 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 177
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 105

Conread position: 1124-1345
Cow position: chr23:331428-331649 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1124-1345
Cow position: chr23:341546-341767 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1124-1345
Cow position: chr23:373985-374206 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1124-1349
Cow position: chr23:435274-435499 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 164
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 1131-1339
Cow position: chr23:475302-475510 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 159
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 1132-1339
Cow position: chr23:487411-487618 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 155
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 1208-1339
Cow position: chr23:519416-519547 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 98
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 1396-1640
Cow position: chr23:374778-375037 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 0

Conread position: 412-590
Cow position: chr5:20418263-20418438 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 128
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 86, 81

Conread position: 564-838
Cow position: chr7:267384-267662 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 183
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 90, 182

Conread position: 410-1139
Cow position: chr8:32240512-32239783 (view UCSC Genome Browser custom track)
Alignm length: 745
Alignm identity: 438
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 274, 125

Conread position: 734-1079
Cow position: chr8:32205491-32205839 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 234
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 87, 96