Cow genome map
| Conread name: | Ss1.1-Thy1-THY010075H09.5 |
| Conread position: | 5-244 |
| Cow position: | chr1:5583557-5583312 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 28 |
| Conread position: | 57-226 |
| Cow position: | chr1:57946744-57946915 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 145 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 154, 0 |
| Conread position: | 301-482 |
| Cow position: | chr1:45099742-45099545 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 1-244 |
| Cow position: | chr10:14881954-14882223 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 61, 35 |
| Conread position: | 1-124 |
| Cow position: | chr11:69862618-69862493 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 107 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 61, 32 |
| Conread position: | 1-244 |
| Cow position: | chr11:44868166-44867918 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 32 |
| Conread position: | 7-244 |
| Cow position: | chr11:40091798-40091555 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 16 |
| Conread position: | 118-244 |
| Cow position: | chr11:41482694-41482565 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 93, 17 |
| Conread position: | 249-407 |
| Cow position: | chr11:44867680-44867522 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 16, 59 |
| Conread position: | 451-540 |
| Cow position: | chr11:44865664-44865575 (view UCSC Genome Browser custom track) |
| Alignm length: | 90 |
| Alignm identity: | 81 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-221 |
| Cow position: | chr13:2618551-2618331 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 32 |
| Conread position: | 1-192 |
| Cow position: | chr14:10036153-10035960 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 163 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 32 |
| Conread position: | 1-182 |
| Cow position: | chr15:34043713-34043896 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 61, 32 |
| Conread position: | 1-152 |
| Cow position: | chr16:15727676-15727829 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 61, 32 |
| Conread position: | 1-242 |
| Cow position: | chr16:48541106-48540876 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 21 |
| Conread position: | 5-244 |
| Cow position: | chr17:15080154-15079910 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 28 |
| Conread position: | 5-244 |
| Cow position: | chr18:173905-173659 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 28 |
| Conread position: | 64-244 |
| Cow position: | chr19:6888344-6888160 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 151 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 147, 0 |
| Conread position: | 102-227 |
| Cow position: | chr19:8863123-8863250 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 5-244 |
| Cow position: | chr2:11447747-11447503 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 28 |
| Conread position: | 5-245 |
| Cow position: | chr20:40099458-40099212 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 30 |
| Conread position: | 1-258 |
| Cow position: | chr21:13778559-13778297 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 32 |
| Conread position: | 224-403 |
| Cow position: | chr21:2873843-2873668 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 149 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 44, 18 |
| Conread position: | 8-244 |
| Cow position: | chr22:32910555-32910788 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 54, 25 |
| Conread position: | 71-245 |
| Cow position: | chr22:41027858-41027680 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 140, 0 |
| Conread position: | 87-227 |
| Cow position: | chr23:30730126-30730268 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 119 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 125, 0 |
| Conread position: | 1-227 |
| Cow position: | chr24:36798818-36799048 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 26 |
| Conread position: | 1-244 |
| Cow position: | chr24:16363765-16363518 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 32 |
| Conread position: | 34-244 |
| Cow position: | chr24:7009734-7009516 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 70-244 |
| Cow position: | chr24:41884673-41884847 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 20, 102 |
| Conread position: | 102-226 |
| Cow position: | chr24:30508594-30508721 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 12-227 |
| Cow position: | chr25:9110706-9110487 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 172 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 50, 21 |
| Conread position: | 67-227 |
| Cow position: | chr25:16236469-16236308 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 130 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 144, 24 |
| Conread position: | 27-227 |
| Cow position: | chr26:188692-188487 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 133 |
| Conread position: | 1-241 |
| Cow position: | chr27:1760247-1759997 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 13 |
| Conread position: | 1-244 |
| Cow position: | chr28:19044236-19043987 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 32 |
| Conread position: | 36-227 |
| Cow position: | chr28:9263355-9263550 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 157 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 37-227 |
| Cow position: | chr28:16435309-16435113 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 166 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 224-540 |
| Cow position: | chr28:16434905-16434575 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 20 |
| Conread position: | 1-244 |
| Cow position: | chr29:1950406-1950160 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 32 |
| Conread position: | 1-244 |
| Cow position: | chr29:38742882-38742635 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 22 |
| Conread position: | 1-244 |
| Cow position: | chr3:8067543-8067293 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 80 |
| Conread position: | 4-244 |
| Cow position: | chr3:81652488-81652732 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 29 |
| Conread position: | 5-227 |
| Cow position: | chr3:77326617-77326391 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 28 |
| Conread position: | 29-244 |
| Cow position: | chr3:81562957-81563180 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 58-244 |
| Cow position: | chr3:47250190-47250001 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 154 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 153, 59 |
| Conread position: | 1-244 |
| Cow position: | chr4:27788832-27788582 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 32 |
| Conread position: | 6-241 |
| Cow position: | chr5:18757025-18757265 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 27 |
| Conread position: | 84-244 |
| Cow position: | chr5:73007367-73007531 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 6-244 |
| Cow position: | chr6:69318773-69319018 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 28 |
| Conread position: | 13-244 |
| Cow position: | chr6:58706267-58706035 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 63, 42 |
| Conread position: | 24-224 |
| Cow position: | chr6:37119864-37119659 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 202 |
| Conread position: | 1-227 |
| Cow position: | chr7:2414296-2414071 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 9 |
| Conread position: | 1-233 |
| Cow position: | chr7:57503572-57503810 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 22 |
| Conread position: | 224-482 |
| Cow position: | chr7:19607631-19607902 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 20 |
| Conread position: | 35-244 |
| Cow position: | chr9:53611895-53611677 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 4-189 |
| Cow position: | chrX:48110412-48110225 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 59, 30 |