Cow genome map
| Conread name: | Ss1.1-Thy1-THY010093B04.5 |
| Conread position: | 61-1407 |
| Cow position: | chr10:46593786-46592449 (view UCSC Genome Browser custom track) |
| Alignm length: | 1347 |
| Alignm identity: | 1063 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 446, 0 |
| Conread position: | 361-1105 |
| Cow position: | chr11:85446426-85445682 (view UCSC Genome Browser custom track) |
| Alignm length: | 755 |
| Alignm identity: | 447 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 214, 230 |
| Conread position: | 361-1116 |
| Cow position: | chr12:27341074-27340320 (view UCSC Genome Browser custom track) |
| Alignm length: | 772 |
| Alignm identity: | 456 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 44, 27 |
| Conread position: | 355-1118 |
| Cow position: | chr13:37744715-37743952 (view UCSC Genome Browser custom track) |
| Alignm length: | 776 |
| Alignm identity: | 463 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 198, 204 |
| Conread position: | 463-1117 |
| Cow position: | chr16:19694549-19695172 (view UCSC Genome Browser custom track) |
| Alignm length: | 657 |
| Alignm identity: | 470 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 487, 41 |
| Conread position: | 63-295 |
| Cow position: | chr17:45720976-45721207 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 0 |
| Conread position: | 63-295 |
| Cow position: | chr17:45743201-45742970 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 0 |
| Conread position: | 286-435 |
| Cow position: | chr17:45721677-45721826 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 323-435 |
| Cow position: | chr17:45756649-45756539 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 432-808 |
| Cow position: | chr17:45756454-45756078 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 432-1121 |
| Cow position: | chr17:45721911-45722600 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 609 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1115-1410 |
| Cow position: | chr17:45724418-45724713 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 320-1118 |
| Cow position: | chr18:15605511-15606309 (view UCSC Genome Browser custom track) |
| Alignm length: | 810 |
| Alignm identity: | 485 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 29 |
| Conread position: | 63-291 |
| Cow position: | chr2:65193177-65192949 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 63-291 |
| Cow position: | chr2:65209447-65209675 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 286-435 |
| Cow position: | chr2:65192641-65192492 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 140 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 286-435 |
| Cow position: | chr2:65209977-65210126 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 435-574 |
| Cow position: | chr2:65192248-65192109 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 133 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 437-1403 |
| Cow position: | chr2:65210870-65211836 (view UCSC Genome Browser custom track) |
| Alignm length: | 968 |
| Alignm identity: | 896 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 945, 938 |
| Conread position: | 966-2083 |
| Cow position: | chr2:65192058-65190952 (view UCSC Genome Browser custom track) |
| Alignm length: | 1122 |
| Alignm identity: | 1000 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 1056, 497 |
| Conread position: | 91-1407 |
| Cow position: | chr21:17711515-17712831 (view UCSC Genome Browser custom track) |
| Alignm length: | 1318 |
| Alignm identity: | 1092 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 1287, 1303 |
| Conread position: | 1164-1402 |
| Cow position: | chr21:9888466-9888691 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 334-1116 |
| Cow position: | chr23:20802293-20801511 (view UCSC Genome Browser custom track) |
| Alignm length: | 794 |
| Alignm identity: | 463 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 241, 266 |
| Conread position: | 348-1105 |
| Cow position: | chr23:31822142-31821383 (view UCSC Genome Browser custom track) |
| Alignm length: | 769 |
| Alignm identity: | 461 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 5, 241 |
| Conread position: | 348-1105 |
| Cow position: | chr23:31858000-31857242 (view UCSC Genome Browser custom track) |
| Alignm length: | 767 |
| Alignm identity: | 458 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 5, 241 |
| Conread position: | 356-1118 |
| Cow position: | chr24:29219718-29218957 (view UCSC Genome Browser custom track) |
| Alignm length: | 777 |
| Alignm identity: | 477 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 5 |
| Conread position: | 61-719 |
| Cow position: | chr5:17899875-17899217 (view UCSC Genome Browser custom track) |
| Alignm length: | 659 |
| Alignm identity: | 558 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 63-291 |
| Cow position: | chr5:22167233-22167005 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 63-291 |
| Cow position: | chr5:22179216-22178988 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 63-291 |
| Cow position: | chr5:22299571-22299799 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 63-291 |
| Cow position: | chr5:22341745-22341973 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 63-291 |
| Cow position: | chr5:67437375-67437147 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 123, 98 |
| Conread position: | 165-1407 |
| Cow position: | chr5:22300263-22301504 (view UCSC Genome Browser custom track) |
| Alignm length: | 1244 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 1213, 854 |
| Conread position: | 286-435 |
| Cow position: | chr5:22166868-22166719 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 286-435 |
| Cow position: | chr5:22178851-22178702 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 286-435 |
| Cow position: | chr5:22299937-22300086 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 286-435 |
| Cow position: | chr5:22342111-22342260 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 286-435 |
| Cow position: | chr5:24450359-24450508 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 286-435 |
| Cow position: | chr5:67435682-67435533 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 437-1406 |
| Cow position: | chr5:22164636-22163667 (view UCSC Genome Browser custom track) |
| Alignm length: | 970 |
| Alignm identity: | 822 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 437-1406 |
| Cow position: | chr5:24452594-24453563 (view UCSC Genome Browser custom track) |
| Alignm length: | 970 |
| Alignm identity: | 822 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 437-1407 |
| Cow position: | chr5:22342624-22343594 (view UCSC Genome Browser custom track) |
| Alignm length: | 971 |
| Alignm identity: | 824 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 445-1118 |
| Cow position: | chr5:67434072-67433399 (view UCSC Genome Browser custom track) |
| Alignm length: | 674 |
| Alignm identity: | 593 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1115-1405 |
| Cow position: | chr5:67429369-67429079 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1160-1406 |
| Cow position: | chr5:17899223-17898977 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 164 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1217-1406 |
| Cow position: | chr5:22176401-22176212 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 160 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 50-1406 |
| Cow position: | chr7:293006-291667 (view UCSC Genome Browser custom track) |
| Alignm length: | 1365 |
| Alignm identity: | 1071 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 829, 134 |
| Conread position: | 351-1105 |
| Cow position: | chr7:13895720-13896473 (view UCSC Genome Browser custom track) |
| Alignm length: | 764 |
| Alignm identity: | 450 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 224, 10 |