Cow genome map

Conread name: Ss1.1-Thy1-THY010205B09.5

Conread position: 20-426
Cow position: chr1:69374770-69374382 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 29

Conread position: 120-426
Cow position: chr1:30516494-30516800 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 142-431
Cow position: chr1:6621091-6621380 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 159

Conread position: 8-426
Cow position: chr10:69640102-69639687 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 42

Conread position: 23-426
Cow position: chr10:15825846-15825443 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 26

Conread position: 23-426
Cow position: chr10:45269906-45270306 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 26

Conread position: 20-426
Cow position: chr11:7724215-7724621 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 29

Conread position: 51-426
Cow position: chr11:43057929-43058304 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 63-426
Cow position: chr11:68582200-68581837 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 142-431
Cow position: chr11:82946836-82947125 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 159

Conread position: 315-426
Cow position: chr11:16255176-16255287 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 102
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 20-426
Cow position: chr12:30861750-30861344 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 29

Conread position: 48-426
Cow position: chr12:1662196-1662574 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 48-426
Cow position: chr12:1673621-1673999 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 72-426
Cow position: chr12:1636192-1635810 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 267
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 24, 0

Conread position: 23-335
Cow position: chr13:27850691-27850378 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 26

Conread position: 48-426
Cow position: chr13:7598936-7599308 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 48-426
Cow position: chr13:52263849-52263471 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 326-426
Cow position: chr13:42559945-42560045 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 92
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 307-428
Cow position: chr14:7028314-7028191 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 96
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 17, 0

Conread position: 20-426
Cow position: chr15:35507110-35506718 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 29

Conread position: 48-426
Cow position: chr15:11070395-11070017 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 63-426
Cow position: chr15:14106155-14106518 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 195-429
Cow position: chr15:46718116-46717882 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 15-426
Cow position: chr16:49012058-49011647 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 34

Conread position: 20-426
Cow position: chr16:49773452-49773858 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 29

Conread position: 20-426
Cow position: chr16:52573310-52573715 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 29

Conread position: 20-426
Cow position: chr17:36084450-36084044 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 29

Conread position: 1-426
Cow position: chr18:46143329-46143753 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 50

Conread position: 20-426
Cow position: chr19:6987725-6987323 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 29

Conread position: 20-426
Cow position: chr19:29154097-29154503 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 29

Conread position: 20-426
Cow position: chr19:41835209-41834806 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 29

Conread position: 20-426
Cow position: chr2:58003360-58002957 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 29

Conread position: 219-426
Cow position: chr2:9225249-9225456 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 20-426
Cow position: chr20:28491493-28491898 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 29

Conread position: 159-404
Cow position: chr20:5115426-5115671 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 158
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 226-426
Cow position: chr20:37397972-37397772 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 177
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 20-426
Cow position: chr22:41852857-41852452 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 30

Conread position: 255-426
Cow position: chr22:41962300-41962475 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 150
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 0

Conread position: 25-435
Cow position: chr23:24170520-24170929 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 45-439
Cow position: chr23:25804038-25804430 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 386, 0

Conread position: 48-426
Cow position: chr23:24185732-24186110 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 48-435
Cow position: chr23:24223257-24223644 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 78-430
Cow position: chr23:26337828-26338179 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 81-426
Cow position: chr23:26341282-26340937 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 237-426
Cow position: chr23:35659464-35659653 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 168
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 261-426
Cow position: chr23:5740794-5740629 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 148
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 85-426
Cow position: chr24:40172648-40172989 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 334-426
Cow position: chr26:29165765-29165857 (view UCSC Genome Browser custom track)
Alignm length: 93
Alignm identity: 83
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 71-426
Cow position: chr27:26613730-26614085 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 201-426
Cow position: chr27:27865541-27865766 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 286-426
Cow position: chr28:27049905-27050045 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 125
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 0, 0

Conread position: 20-426
Cow position: chr29:1838818-1839224 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 29

Conread position: 3-424
Cow position: chr3:1077409-1077830 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 47

Conread position: 7-448
Cow position: chr3:62459309-62458868 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 29

Conread position: 45-426
Cow position: chr3:62478433-62478052 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 45-429
Cow position: chr3:17591902-17592286 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 47-429
Cow position: chr3:17614441-17614823 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 47-429
Cow position: chr3:17624755-17624373 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 48-429
Cow position: chr3:17645420-17645801 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 48-432
Cow position: chr3:62448578-62448962 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 48-441
Cow position: chr3:62431042-62430649 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 296-426
Cow position: chr3:56588624-56588752 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 115
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 67, 0

Conread position: 459-823
Cow position: chr3:62456022-62455648 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 0

Conread position: 20-426
Cow position: chr4:15926025-15925619 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 29

Conread position: 189-431
Cow position: chr4:64390607-64390849 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 273-426
Cow position: chr4:35724460-35724307 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 135
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 0, 0

Conread position: 20-426
Cow position: chr5:13917403-13916997 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 29

Conread position: 54-426
Cow position: chr5:31548158-31548530 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 321-426
Cow position: chr5:8026503-8026398 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 95
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 349-426
Cow position: chr5:45989719-45989642 (view UCSC Genome Browser custom track)
Alignm length: 78
Alignm identity: 72
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 20-426
Cow position: chr6:7483608-7484013 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 29

Conread position: 20-426
Cow position: chr6:56962142-56962549 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 29

Conread position: 45-426
Cow position: chr6:39764562-39764181 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 48-426
Cow position: chr6:39755834-39755456 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 76-426
Cow position: chr6:20715440-20715790 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 201-346
Cow position: chr6:37164862-37165007 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 131
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 0, 0

Conread position: 20-426
Cow position: chr7:13894804-13894398 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 29

Conread position: 42-284
Cow position: chr7:2968612-2968375 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 166
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 145, 14

Conread position: 48-429
Cow position: chr7:2957920-2958301 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 189-426
Cow position: chr8:11335272-11335035 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 255-426
Cow position: chr8:36912090-36911919 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 147
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 93-426
Cow position: chr9:36521591-36521258 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 185-426
Cow position: chr9:35746073-35746314 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 18-426
Cow position: chrX:6377811-6378219 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 31

Conread position: 154-426
Cow position: chrX:22916340-22916068 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 155-425
Cow position: chrX:15369346-15369613 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 177
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 202, 0

Conread position: 176-396
Cow position: chrX:16572722-16572502 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 153
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 0, 0