Cow genome map
| Conread name: | Ss1.1-Tra1-TCH01D040102.5.5 |
| Conread position: | 125-1480 |
| Cow position: | chr10:46593786-46592440 (view UCSC Genome Browser custom track) |
| Alignm length: | 1356 |
| Alignm identity: | 1223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 446, 0 |
| Conread position: | 425-1169 |
| Cow position: | chr11:85446426-85445682 (view UCSC Genome Browser custom track) |
| Alignm length: | 758 |
| Alignm identity: | 440 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 163, 175 |
| Conread position: | 324-1180 |
| Cow position: | chr12:27341175-27340320 (view UCSC Genome Browser custom track) |
| Alignm length: | 872 |
| Alignm identity: | 505 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 180, 190 |
| Conread position: | 527-1181 |
| Cow position: | chr16:19694549-19695172 (view UCSC Genome Browser custom track) |
| Alignm length: | 657 |
| Alignm identity: | 465 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 396, 41 |
| Conread position: | 127-345 |
| Cow position: | chr17:45720976-45721194 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 127-345 |
| Cow position: | chr17:45743201-45742983 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 350-500 |
| Cow position: | chr17:45721677-45721827 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 387-500 |
| Cow position: | chr17:45756649-45756538 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 93 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 499-872 |
| Cow position: | chr17:45756451-45756078 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 499-1186 |
| Cow position: | chr17:45721914-45722601 (view UCSC Genome Browser custom track) |
| Alignm length: | 688 |
| Alignm identity: | 573 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1179-1478 |
| Cow position: | chr17:45724418-45724714 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 286, 0 |
| Conread position: | 384-1182 |
| Cow position: | chr18:15605511-15606309 (view UCSC Genome Browser custom track) |
| Alignm length: | 812 |
| Alignm identity: | 469 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 203, 213 |
| Conread position: | 64-354 |
| Cow position: | chr2:65209386-65209674 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 127-354 |
| Cow position: | chr2:65193177-65192950 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 350-500 |
| Cow position: | chr2:65192641-65192491 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 350-500 |
| Cow position: | chr2:65209977-65210127 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 131 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 499-1479 |
| Cow position: | chr2:65210868-65211851 (view UCSC Genome Browser custom track) |
| Alignm length: | 984 |
| Alignm identity: | 848 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 958, 0 |
| Conread position: | 501-636 |
| Cow position: | chr2:65192246-65192111 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 121 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1030-1466 |
| Cow position: | chr2:65192058-65191622 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 154-1480 |
| Cow position: | chr21:17711514-17712840 (view UCSC Genome Browser custom track) |
| Alignm length: | 1327 |
| Alignm identity: | 1251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1227-1640 |
| Cow position: | chr21:9888464-9888866 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 373, 62 |
| Conread position: | 389-1180 |
| Cow position: | chr23:20802302-20801511 (view UCSC Genome Browser custom track) |
| Alignm length: | 808 |
| Alignm identity: | 484 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 199, 206 |
| Conread position: | 419-1182 |
| Cow position: | chr24:29219720-29218957 (view UCSC Genome Browser custom track) |
| Alignm length: | 777 |
| Alignm identity: | 450 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 169, 181 |
| Conread position: | 1324-1454 |
| Cow position: | chr25:10730645-10730517 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 107 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 37-134 |
| Cow position: | chr5:22340302-22340397 (view UCSC Genome Browser custom track) |
| Alignm length: | 98 |
| Alignm identity: | 89 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 125-783 |
| Cow position: | chr5:17899875-17899217 (view UCSC Genome Browser custom track) |
| Alignm length: | 659 |
| Alignm identity: | 636 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 127-354 |
| Cow position: | chr5:22167233-22167006 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 127-354 |
| Cow position: | chr5:22179216-22178989 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 127-354 |
| Cow position: | chr5:22299571-22299798 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 127-354 |
| Cow position: | chr5:22341745-22341972 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 127-354 |
| Cow position: | chr5:67437375-67437148 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 177 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 121, 100 |
| Conread position: | 229-1480 |
| Cow position: | chr5:22300263-22301513 (view UCSC Genome Browser custom track) |
| Alignm length: | 1252 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 854, 0 |
| Conread position: | 350-500 |
| Cow position: | chr5:22166868-22166718 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 143 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 350-500 |
| Cow position: | chr5:22178851-22178701 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 143 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 350-500 |
| Cow position: | chr5:22299937-22300087 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 148 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 350-500 |
| Cow position: | chr5:22342111-22342261 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 148 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 350-500 |
| Cow position: | chr5:24450359-24450509 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 143 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 350-500 |
| Cow position: | chr5:67435682-67435532 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 495-1645 |
| Cow position: | chr5:22342618-22343758 (view UCSC Genome Browser custom track) |
| Alignm length: | 1155 |
| Alignm identity: | 1087 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 1103, 1021 |
| Conread position: | 499-1460 |
| Cow position: | chr5:22164638-22163677 (view UCSC Genome Browser custom track) |
| Alignm length: | 962 |
| Alignm identity: | 913 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 499-1460 |
| Cow position: | chr5:24452592-24453553 (view UCSC Genome Browser custom track) |
| Alignm length: | 962 |
| Alignm identity: | 917 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 509-1182 |
| Cow position: | chr5:67434072-67433399 (view UCSC Genome Browser custom track) |
| Alignm length: | 674 |
| Alignm identity: | 548 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1179-1484 |
| Cow position: | chr5:67429369-67429070 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 0 |
| Conread position: | 1224-1460 |
| Cow position: | chr5:17899223-17898987 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1281-1460 |
| Cow position: | chr5:22176401-22176222 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 166 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 163-364 |
| Cow position: | chr6:43623328-43623525 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 37-1640 |
| Cow position: | chr7:293082-291508 (view UCSC Genome Browser custom track) |
| Alignm length: | 1616 |
| Alignm identity: | 1420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 903, 44 |