Cow genome map
| Conread name: | Ss1.1-Tra1-TCH01F030097.5 |
| Conread position: | 174-500 |
| Cow position: | chr10:1418770-1418453 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 51, 24 |
| Conread position: | 178-430 |
| Cow position: | chr10:15363756-15363500 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 192 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 41, 20 |
| Conread position: | 255-574 |
| Cow position: | chr10:14419333-14419014 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 242 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 94, 39 |
| Conread position: | 294-648 |
| Cow position: | chr10:6279388-6279748 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 255 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 60, 12 |
| Conread position: | 299-567 |
| Cow position: | chr10:69705587-69705308 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 39, 101 |
| Conread position: | 179-642 |
| Cow position: | chr11:21619104-21619566 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 323 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 46, 19 |
| Conread position: | 200-502 |
| Cow position: | chr11:41650083-41650376 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 25, 72 |
| Conread position: | 239-582 |
| Cow position: | chr11:35816152-35815795 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 247 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 13, 70 |
| Conread position: | 361-574 |
| Cow position: | chr11:49431504-49431290 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 27, 73 |
| Conread position: | 195-423 |
| Cow position: | chr12:16660443-16660212 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 165 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 16, 26 |
| Conread position: | 199-574 |
| Cow position: | chr12:9067835-9068194 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 100 |
| Conread position: | 200-421 |
| Cow position: | chr12:122283-122504 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 25, 122 |
| Conread position: | 200-636 |
| Cow position: | chr12:6863045-6862598 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 306 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 25, 163 |
| Conread position: | 204-559 |
| Cow position: | chr12:28022855-28022497 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 253 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 21, 159 |
| Conread position: | 178-438 |
| Cow position: | chr13:3014121-3013870 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 33, 13 |
| Conread position: | 186-714 |
| Cow position: | chr13:54054984-54055536 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 370 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 42, 91 |
| Conread position: | 200-618 |
| Cow position: | chr13:43226701-43227112 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 300 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 25, 59 |
| Conread position: | 200-620 |
| Cow position: | chr13:11515759-11515325 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 301 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 9, 134 |
| Conread position: | 175-502 |
| Cow position: | chr15:26062692-26062376 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 239 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 38, 46 |
| Conread position: | 178-399 |
| Cow position: | chr15:16656298-16656076 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 78, 184 |
| Conread position: | 270-582 |
| Cow position: | chr15:17179773-17180075 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 215 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 80, 91 |
| Conread position: | 164-502 |
| Cow position: | chr17:11308605-11308934 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 247 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 61, 20 |
| Conread position: | 184-498 |
| Cow position: | chr17:2806702-2807009 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 30 |
| Conread position: | 200-502 |
| Cow position: | chr17:13154844-13155139 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 200 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 25, 67 |
| Conread position: | 360-574 |
| Cow position: | chr17:35556843-35556626 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 28, 35 |
| Conread position: | 171-502 |
| Cow position: | chr18:4514078-4514405 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 9 |
| Conread position: | 178-435 |
| Cow position: | chr18:15873568-15873303 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 26, 181 |
| Conread position: | 198-503 |
| Cow position: | chr18:50785373-50785670 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 13, 145 |
| Conread position: | 198-510 |
| Cow position: | chr18:14711012-14710712 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 221 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 158, 50 |
| Conread position: | 224-430 |
| Cow position: | chr18:44006631-44006838 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 32, 140 |
| Conread position: | 261-504 |
| Cow position: | chr18:27471829-27472070 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 89, 20 |
| Conread position: | 262-713 |
| Cow position: | chr18:29316794-29316310 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 324 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 92, 99 |
| Conread position: | 427-642 |
| Cow position: | chr18:35666388-35666610 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 76, 80 |
| Conread position: | 174-565 |
| Cow position: | chr19:36161603-36161224 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 285 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 51, 24 |
| Conread position: | 364-644 |
| Cow position: | chr19:49322779-49323074 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 23, 188 |
| Conread position: | 200-430 |
| Cow position: | chr20:15951550-15951782 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 25, 154 |
| Conread position: | 178-425 |
| Cow position: | chr21:28845309-28845064 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 186 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 172, 23 |
| Conread position: | 195-430 |
| Cow position: | chr21:44670420-44670655 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 60, 72 |
| Conread position: | 172-503 |
| Cow position: | chr22:45537742-45537411 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 231 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 41, 99 |
| Conread position: | 174-616 |
| Cow position: | chr22:37822665-37823134 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 323 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 78, 17 |
| Conread position: | 184-425 |
| Cow position: | chr22:37775682-37775919 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 24, 31 |
| Conread position: | 264-574 |
| Cow position: | chr22:15734109-15734423 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 219 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 86, 98 |
| Conread position: | 273-502 |
| Cow position: | chr23:6327953-6327732 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 14, 86 |
| Conread position: | 354-502 |
| Cow position: | chr23:6097681-6097820 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 33, 80 |
| Conread position: | 178-502 |
| Cow position: | chr24:12880672-12880368 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 210, 26 |
| Conread position: | 182-501 |
| Cow position: | chr24:19812803-19813098 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 231 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 42, 182 |
| Conread position: | 224-613 |
| Cow position: | chr24:9910068-9909695 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 265 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 32, 138 |
| Conread position: | 178-377 |
| Cow position: | chr25:14337986-14338192 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 109, 42 |
| Conread position: | 232-562 |
| Cow position: | chr25:33270829-33270517 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 224 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 24, 93 |
| Conread position: | 311-585 |
| Cow position: | chr25:31175925-31176210 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 12, 105 |
| Conread position: | 503-647 |
| Cow position: | chr25:19019266-19019125 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 199-502 |
| Cow position: | chr26:31118423-31118125 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 21, 67 |
| Conread position: | 200-502 |
| Cow position: | chr26:30118839-30118543 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 222 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 25, 163 |
| Conread position: | 207-560 |
| Cow position: | chr26:26673352-26673707 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 259 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 18, 101 |
| Conread position: | 170-384 |
| Cow position: | chr28:20239071-20239286 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 5, 167 |
| Conread position: | 516-651 |
| Cow position: | chr28:4202993-4203133 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 55, 13 |
| Conread position: | 267-498 |
| Cow position: | chr29:45576326-45576107 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 131, 94 |
| Conread position: | 39-738 |
| Cow position: | chr9:60226435-60225703 (view UCSC Genome Browser custom track) |
| Alignm length: | 741 |
| Alignm identity: | 568 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 8 |
| Conread position: | 173-713 |
| Cow position: | chr9:26522942-26523498 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 376 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 52, 25 |
| Conread position: | 174-500 |
| Cow position: | chr9:42485455-42485776 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 237 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 77, 118 |
| Conread position: | 174-502 |
| Cow position: | chr9:26964112-26964450 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 241 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 28, 189 |
| Conread position: | 180-439 |
| Cow position: | chr9:33436002-33436259 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 68, 136 |
| Conread position: | 398-718 |
| Cow position: | chr9:20502228-20502574 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 227 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 200-429 |
| Cow position: | chrX:33154271-33154499 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 25, 14 |