Non-Coding RNA Search

Cow genome map


           Conread name:
           Ss1.1-Tra1-TCH01F040013.5
        

               Conread position:
               834-1012
               

               Cow position:
               chr1:66465266-66465444 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               125
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               164, 20
               

               Conread position:
               840-1026
               

               Cow position:
               chr1:31114831-31115018 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               132
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               158, 0
               

               Conread position:
               844-1013
               

               Cow position:
               chr1:12861886-12862054 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               121
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               159, 53
               

               Conread position:
               844-1034
               

               Cow position:
               chr1:46317462-46317652 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               132
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               154, 98
               

               Conread position:
               857-1031
               

               Cow position:
               chr1:15947511-15947685 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               128
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               141, 87
               

               Conread position:
               860-1015
               

               Cow position:
               chr1:12524822-12524976 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               114
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               138, 10
               

               Conread position:
               860-1015
               

               Cow position:
               chr1:12572222-12572376 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               117
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               138, 10
               

               Conread position:
               869-996
               

               Cow position:
               chr1:19907884-19908010 (view UCSC Genome Browser custom track)
               

               Alignm length:
               129
               

               Alignm identity:
               100
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               7, 12
               

               Conread position:
               836-1029
               

               Cow position:
               chr10:59667434-59667244 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               138
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               156, 19
               

               Conread position:
               841-1034
               

               Cow position:
               chr10:64134195-64134388 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               132
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               152, 102
               

               Conread position:
               842-1026
               

               Cow position:
               chr10:29738309-29738493 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               130
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               77, 71
               

               Conread position:
               842-1036
               

               Cow position:
               chr10:39580897-39580704 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               145
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               32, 40
               

               Conread position:
               843-999
               

               Cow position:
               chr10:9126276-9126432 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               114
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               65, 106
               

               Conread position:
               843-1027
               

               Cow position:
               chr10:39574818-39574999 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               128
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               100, 0
               

               Conread position:
               844-1031
               

               Cow position:
               chr10:44838697-44838882 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               136
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               154, 36
               

               Conread position:
               845-1022
               

               Cow position:
               chr10:5289282-5289459 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               129
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               153, 98
               

               Conread position:
               849-1022
               

               Cow position:
               chr10:55735957-55736130 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               127
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               149, 31
               

               Conread position:
               857-1022
               

               Cow position:
               chr10:10089414-10089579 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               127
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               140, 86
               

               Conread position:
               860-1026
               

               Cow position:
               chr10:52987390-52987224 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               120
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               134, 83
               

               Conread position:
               842-995
               

               Cow position:
               chr11:9600271-9600119 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               113
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               34, 39
               

               Conread position:
               842-1036
               

               Cow position:
               chr11:17090841-17091032 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               138
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               156, 26
               

               Conread position:
               842-1075
               

               Cow position:
               chr11:29542673-29542902 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               159
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               157, 39
               

               Conread position:
               844-1025
               

               Cow position:
               chr11:38807891-38808070 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               132
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               154, 36
               

               Conread position:
               844-1027
               

               Cow position:
               chr11:57584885-57585067 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               131
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               154, 100
               

               Conread position:
               851-1015
               

               Cow position:
               chr11:49791577-49791739 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               124
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               147, 28
               

               Conread position:
               851-1022
               

               Cow position:
               chr11:59129658-59129487 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               122
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               9, 93
               

               Conread position:
               853-1026
               

               Cow position:
               chr11:18883016-18883186 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               123
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               88, 0
               

               Conread position:
               880-1028
               

               Cow position:
               chr11:39662348-39662495 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               111
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               118, 62
               

               Conread position:
               841-1068
               

               Cow position:
               chr12:45646745-45646971 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               154
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               156, 107
               

               Conread position:
               832-1034
               

               Cow position:
               chr13:39847632-39847435 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               143
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               166, 22
               

               Conread position:
               839-1022
               

               Cow position:
               chr13:61597223-61597406 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               131
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               159, 103
               

               Conread position:
               842-1013
               

               Cow position:
               chr13:980495-980324 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               123
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               136, 12
               

               Conread position:
               842-1025
               

               Cow position:
               chr13:40733706-40733886 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               130
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               32, 39
               

               Conread position:
               842-1036
               

               Cow position:
               chr13:49628100-49628290 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               142
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               74, 103
               

               Conread position:
               844-1031
               

               Cow position:
               chr13:61810725-61810910 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               139
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               16, 10
               

               Conread position:
               849-1037
               

               Cow position:
               chr13:59643961-59644149 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               136
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               35, 95
               

               Conread position:
               862-1027
               

               Cow position:
               chr13:39040085-39040247 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               120
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               136, 7
               

               Conread position:
               6-657
               

               Cow position:
               chr14:39572614-39573261 (view UCSC Genome Browser custom track)
               

               Alignm length:
               658
               

               Alignm identity:
               560
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               376, 27
               

               Conread position:
               655-1191
               

               Cow position:
               chr14:39573284-39573808 (view UCSC Genome Browser custom track)
               

               Alignm length:
               539
               

               Alignm identity:
               438
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               245, 288
               

               Conread position:
               840-1036
               

               Cow position:
               chr14:13016154-13015957 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               138
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               88, 98
               

               Conread position:
               846-1036
               

               Cow position:
               chr14:46971196-46971007 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               135
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               152, 51
               

               Conread position:
               883-1074
               

               Cow position:
               chr14:14788054-14787864 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               137
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               112, 22
               

               Conread position:
               838-1025
               

               Cow position:
               chr15:13604029-13603841 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               138
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               5, 9
               

               Conread position:
               842-1026
               

               Cow position:
               chr15:23416371-23416194 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               134
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               156, 12
               

               Conread position:
               842-1028
               

               Cow position:
               chr15:17248429-17248611 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               133
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               155, 102
               

               Conread position:
               859-1041
               

               Cow position:
               chr15:53184037-53184219 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               131
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               88, 77
               

               Conread position:
               880-1036
               

               Cow position:
               chr15:13541194-13541349 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               124
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               103, 16
               

               Conread position:
               830-1030
               

               Cow position:
               chr16:22169752-22169950 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               143
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               168, 13
               

               Conread position:
               831-1023
               

               Cow position:
               chr16:39691967-39692156 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               136
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               167, 5
               

               Conread position:
               833-991
               

               Cow position:
               chr16:2077411-2077254 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               116
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               110, 0
               

               Conread position:
               838-1030
               

               Cow position:
               chr16:37391647-37391839 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               132
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               160, 106
               

               Conread position:
               840-1027
               

               Cow position:
               chr16:19045214-19045030 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               135
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               158, 100
               

               Conread position:
               842-1022
               

               Cow position:
               chr16:23144454-23144635 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               132
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               74, 97
               

               Conread position:
               842-1074
               

               Cow position:
               chr16:38944368-38944594 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               160
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               93, 0
               

               Conread position:
               843-1026
               

               Cow position:
               chr16:32106600-32106778 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               133
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               155, 12
               

               Conread position:
               846-1068
               

               Cow position:
               chr16:30182892-30183118 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               160
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               151, 97
               

               Conread position:
               855-1022
               

               Cow position:
               chr16:53819788-53819948 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               125
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               112, 41
               

               Conread position:
               858-1022
               

               Cow position:
               chr16:35057597-35057761 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               118
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               140, 85
               

               Conread position:
               861-1030
               

               Cow position:
               chr16:28048323-28048155 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               126
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               137, 82
               

               Conread position:
               842-1027
               

               Cow position:
               chr17:43502009-43501820 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               135
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               90, 84
               

               Conread position:
               844-1015
               

               Cow position:
               chr17:19150153-19150324 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               125
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               153, 99
               

               Conread position:
               845-1015
               

               Cow position:
               chr17:33310822-33310990 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               122
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               153, 33
               

               Conread position:
               850-1028
               

               Cow position:
               chr17:31269592-31269414 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               133
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               143, 96
               

               Conread position:
               850-1030
               

               Cow position:
               chr17:37762046-37762226 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               132
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               145, 94
               

               Conread position:
               854-1031
               

               Cow position:
               chr17:34012585-34012409 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               127
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               22, 28
               

               Conread position:
               854-1031
               

               Cow position:
               chr17:38133029-38132858 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               128
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               144, 79
               

               Conread position:
               873-1022
               

               Cow position:
               chr17:26850361-26850509 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               111
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               125, 8
               

               Conread position:
               841-1015
               

               Cow position:
               chr18:14210662-14210489 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               126
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               22, 15
               

               Conread position:
               843-1031
               

               Cow position:
               chr18:9908413-9908599 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               135
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               155, 62
               

               Conread position:
               843-1071
               

               Cow position:
               chr18:21716875-21717102 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               167
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               24, 101
               

               Conread position:
               844-1021
               

               Cow position:
               chr18:18647486-18647662 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               134
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               154, 99
               

               Conread position:
               849-1014
               

               Cow position:
               chr18:30977248-30977084 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               118
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               91, 0
               

               Conread position:
               849-1029
               

               Cow position:
               chr18:6581071-6580889 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               132
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               111, 94
               

               Conread position:
               864-1036
               

               Cow position:
               chr18:53753903-53754072 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               124
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               134, 12
               

               Conread position:
               838-1036
               

               Cow position:
               chr19:13579736-13579538 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               137
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               158, 105
               

               Conread position:
               842-1012
               

               Cow position:
               chr19:11588416-11588586 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               128
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               10, 98
               

               Conread position:
               842-1026
               

               Cow position:
               chr19:39774794-39774610 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               132
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               156, 102
               

               Conread position:
               844-1031
               

               Cow position:
               chr19:8697652-8697465 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               131
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               118, 99
               

               Conread position:
               847-1043
               

               Cow position:
               chr19:12563272-12563076 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               138
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               150, 96
               

               Conread position:
               850-1030
               

               Cow position:
               chr19:44117-44295 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               127
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               147, 7
               

               Conread position:
               791-1030
               

               Cow position:
               chr2:60050143-60050382 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               132
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               200, 152
               

               Conread position:
               821-1013
               

               Cow position:
               chr2:27340326-27340129 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               138
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               119, 0
               

               Conread position:
               821-1036
               

               Cow position:
               chr2:66603596-66603383 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               149
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               177, 49
               

               Conread position:
               837-1031
               

               Cow position:
               chr2:72102687-72102881 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               143
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               161, 104
               

               Conread position:
               843-994
               

               Cow position:
               chr2:14413130-14413279 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               116
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               16, 9
               

               Conread position:
               850-1034
               

               Cow position:
               chr2:66290699-66290511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               134
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               148, 57
               

               Conread position:
               852-1027
               

               Cow position:
               chr2:66056999-66056824 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               127
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               146, 91
               

               Conread position:
               854-1015
               

               Cow position:
               chr2:12875899-12876053 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               121
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               144, 14
               

               Conread position:
               844-1030
               

               Cow position:
               chr20:23112566-23112380 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               133
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               5, 11
               

               Conread position:
               844-1031
               

               Cow position:
               chr20:21369805-21369621 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               131
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               154, 24
               

               Conread position:
               831-1015
               

               Cow position:
               chr21:35814636-35814823 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               133
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               15, 115
               

               Conread position:
               838-1026
               

               Cow position:
               chr21:47688206-47688395 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               139
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               7, 44
               

               Conread position:
               842-1036
               

               Cow position:
               chr21:8594609-8594799 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               142
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               156, 12
               

               Conread position:
               844-1015
               

               Cow position:
               chr21:14115477-14115642 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               127
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               153, 28
               

               Conread position:
               854-1026
               

               Cow position:
               chr21:2402683-2402513 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               127
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               89, 0
               

               Conread position:
               854-1033
               

               Cow position:
               chr21:25502315-25502139 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               130
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               143, 72
               

               Conread position:
               855-1030
               

               Cow position:
               chr21:18362217-18362393 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               127
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               128, 88
               

               Conread position:
               858-1027
               

               Cow position:
               chr21:38003254-38003421 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               133
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               18, 10
               

               Conread position:
               860-1027
               

               Cow position:
               chr21:41085654-41085486 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               120
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               132, 0
               

               Conread position:
               836-1032
               

               Cow position:
               chr22:43137724-43137531 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               142
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               119, 7
               

               Conread position:
               838-1022
               

               Cow position:
               chr22:35569087-35568902 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               130
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               27, 106
               

               Conread position:
               839-1029
               

               Cow position:
               chr22:32425273-32425462 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               138
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               31, 42
               

               Conread position:
               842-1015
               

               Cow position:
               chr22:30295136-30294963 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               126
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               156, 97
               

               Conread position:
               843-1000
               

               Cow position:
               chr22:13086577-13086420 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               118
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               30, 38
               

               Conread position:
               842-1027
               

               Cow position:
               chr23:2115036-2114851 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               136
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               155, 101
               

               Conread position:
               849-1044
               

               Cow position:
               chr23:18619905-18619713 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               138
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               149, 74
               

               Conread position:
               833-1027
               

               Cow position:
               chr24:35168455-35168647 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               134
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               165, 25
               

               Conread position:
               842-1036
               

               Cow position:
               chr24:34422840-34423027 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               135
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               844-997
               

               Cow position:
               chr24:12282737-12282585 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               110
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               100, 0
               

               Conread position:
               844-1034
               

               Cow position:
               chr24:17818892-17818703 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               131
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               154, 10
               

               Conread position:
               832-1022
               

               Cow position:
               chr25:21490470-21490275 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               137
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               111, 0
               

               Conread position:
               836-1030
               

               Cow position:
               chr25:13559137-13559331 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               144
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               160, 107
               

               Conread position:
               841-1031
               

               Cow position:
               chr25:32353554-32353357 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               139
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               28, 109
               

               Conread position:
               842-1027
               

               Cow position:
               chr25:14905197-14905009 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               132
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               80, 102
               

               Conread position:
               842-1069
               

               Cow position:
               chr25:20220197-20220422 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               163
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               35, 39
               

               Conread position:
               844-1025
               

               Cow position:
               chr25:11995644-11995464 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               131
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               154, 99
               

               Conread position:
               844-1026
               

               Cow position:
               chr25:31592400-31592220 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               134
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               154, 71
               

               Conread position:
               844-1059
               

               Cow position:
               chr25:15707085-15707295 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               150
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               154, 24
               

               Conread position:
               858-1033
               

               Cow position:
               chr25:22569930-22569754 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               131
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               140, 18
               

               Conread position:
               859-1015
               

               Cow position:
               chr25:7019077-7018924 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               116
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               136, 84
               

               Conread position:
               861-1026
               

               Cow position:
               chr25:21244357-21244522 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               118
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               140, 82
               

               Conread position:
               842-995
               

               Cow position:
               chr26:12643649-12643498 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               114
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               8, 13
               

               Conread position:
               843-1031
               

               Cow position:
               chr26:16103021-16102831 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               136
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               155, 71
               

               Conread position:
               816-1027
               

               Cow position:
               chr27:26891714-26891500 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               149
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               15, 69
               

               Conread position:
               844-1030
               

               Cow position:
               chr27:27183780-27183596 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               133
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               30, 37
               

               Conread position:
               854-1027
               

               Cow position:
               chr27:17445269-17445444 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               131
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               40, 33
               

               Conread position:
               842-1030
               

               Cow position:
               chr28:30393621-30393813 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               136
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               145, 102
               

               Conread position:
               836-1036
               

               Cow position:
               chr29:7741016-7741213 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               141
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               174, 42
               

               Conread position:
               836-1036
               

               Cow position:
               chr29:7741696-7741892 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               147
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               140, 42
               

               Conread position:
               842-1030
               

               Cow position:
               chr29:36812180-36812362 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               136
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               35, 12
               

               Conread position:
               844-1026
               

               Cow position:
               chr29:18064398-18064215 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               128
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               153, 105
               

               Conread position:
               846-1027
               

               Cow position:
               chr29:30434152-30434332 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               126
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               151, 99
               

               Conread position:
               849-1015
               

               Cow position:
               chr29:8587002-8586838 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               120
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               149, 19
               

               Conread position:
               837-1041
               

               Cow position:
               chr3:72402368-72402570 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               142
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               161, 106
               

               Conread position:
               839-1029
               

               Cow position:
               chr3:15745956-15745770 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               136
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               159, 8
               

               Conread position:
               841-1015
               

               Cow position:
               chr3:64714848-64714675 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               130
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               157, 102
               

               Conread position:
               841-1034
               

               Cow position:
               chr3:15384297-15384489 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               136
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               33, 43
               

               Conread position:
               842-1015
               

               Cow position:
               chr3:10615843-10616017 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               126
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               156, 92
               

               Conread position:
               843-1013
               

               Cow position:
               chr3:74234418-74234586 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               126
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               30, 39
               

               Conread position:
               844-1025
               

               Cow position:
               chr3:70350517-70350338 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               132
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               154, 61
               

               Conread position:
               845-1029
               

               Cow position:
               chr3:28279400-28279581 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               134
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               59, 13
               

               Conread position:
               849-1027
               

               Cow position:
               chr3:7544968-7544791 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               130
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               44, 95
               

               Conread position:
               854-1027
               

               Cow position:
               chr3:7376517-7376343 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               127
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               16, 90
               

               Conread position:
               858-1015
               

               Cow position:
               chr3:61671512-61671667 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               121
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               19, 24
               

               Conread position:
               860-1030
               

               Cow position:
               chr3:38004565-38004396 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               124
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               21, 14
               

               Conread position:
               869-1031
               

               Cow position:
               chr3:40000158-40000318 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               119
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               129, 122
               

               Conread position:
               843-1026
               

               Cow position:
               chr4:45553278-45553096 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               130
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               154, 106
               

               Conread position:
               843-1027
               

               Cow position:
               chr4:37039048-37039232 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               130
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               155, 109
               

               Conread position:
               837-1012
               

               Cow position:
               chr5:51158256-51158429 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               124
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               50, 0
               

               Conread position:
               838-1022
               

               Cow position:
               chr5:38874515-38874332 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               132
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               160, 106
               

               Conread position:
               838-1033
               

               Cow position:
               chr5:37401723-37401921 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               138
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               131, 105
               

               Conread position:
               839-1027
               

               Cow position:
               chr5:31059842-31060029 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               139
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               159, 104
               

               Conread position:
               844-1030
               

               Cow position:
               chr5:30357322-30357511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               139
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               26, 60
               

               Conread position:
               844-1036
               

               Cow position:
               chr5:18477783-18477592 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               138
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               154, 89
               

               Conread position:
               862-1030
               

               Cow position:
               chr5:48986069-48985904 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               127
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               56, 7
               

               Conread position:
               843-1022
               

               Cow position:
               chr6:40718655-40718828 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               129
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               155, 38
               

               Conread position:
               843-1026
               

               Cow position:
               chr6:24246504-24246684 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               129
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               155, 99
               

               Conread position:
               843-1030
               

               Cow position:
               chr6:35099869-35100056 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               134
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               141, 112
               

               Conread position:
               843-1036
               

               Cow position:
               chr6:52271863-52272052 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               137
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               100, 113
               

               Conread position:
               849-1015
               

               Cow position:
               chr6:5524672-5524838 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               122
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               148, 95
               

               Conread position:
               854-1025
               

               Cow position:
               chr6:48968975-48968803 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               129
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               144, 0
               

               Conread position:
               842-1027
               

               Cow position:
               chr7:54243830-54243647 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               134
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               156, 28
               

               Conread position:
               842-1069
               

               Cow position:
               chr7:29598592-29598368 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               163
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               14, 27
               

               Conread position:
               844-1027
               

               Cow position:
               chr7:12657988-12657805 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               133
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               153, 100
               

               Conread position:
               848-1020
               

               Cow position:
               chr7:37581120-37581290 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               125
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               150, 20
               

               Conread position:
               854-1030
               

               Cow position:
               chr7:51926531-51926360 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               127
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               144, 89
               

               Conread position:
               855-1030
               

               Cow position:
               chr7:55977090-55976913 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               127
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               15, 90
               

               Conread position:
               864-1008
               

               Cow position:
               chr7:52601294-52601151 (view UCSC Genome Browser custom track)
               

               Alignm length:
               146
               

               Alignm identity:
               108
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               134, 79
               

               Conread position:
               873-1030
               

               Cow position:
               chr7:8046992-8046838 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               116
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               125, 7
               

               Conread position:
               887-1044
               

               Cow position:
               chr7:9051145-9050987 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               119
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               93, 49
               

               Conread position:
               838-1015
               

               Cow position:
               chr8:25635961-25635788 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               133
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               39, 43
               

               Conread position:
               842-1035
               

               Cow position:
               chr8:34573078-34572885 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               140
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               40, 102
               

               Conread position:
               852-1031
               

               Cow position:
               chr8:9728717-9728893 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               129
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               146, 72
               

               Conread position:
               855-1027
               

               Cow position:
               chr8:33461628-33461800 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               130
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               31, 89
               

               Conread position:
               858-1030
               

               Cow position:
               chr8:14601320-14601492 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               126
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               140, 91
               

               Conread position:
               833-1022
               

               Cow position:
               chr9:32724883-32724697 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               133
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               172, 9
               

               Conread position:
               843-1013
               

               Cow position:
               chr9:28606973-28606804 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               121
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               155, 54
               

               Conread position:
               858-1031
               

               Cow position:
               chr9:40553280-40553108 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               131
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               81, 70
               

               Conread position:
               862-1051
               

               Cow position:
               chr9:54673990-54674181 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               138
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               12, 19
               

               Conread position:
               835-984
               

               Cow position:
               chrX:10898383-10898236 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               112
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               20, 0
               

               Conread position:
               838-1027
               

               Cow position:
               chrX:43469818-43469636 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               137
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               160, 104
               

               Conread position:
               841-1027
               

               Cow position:
               chrX:42292126-42291939 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               130
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               24, 80
               

               Conread position:
               842-1016
               

               Cow position:
               chrX:24559622-24559447 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               126
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               32, 39
               

               Conread position:
               842-1022
               

               Cow position:
               chrX:43324025-43323845 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               129
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               56, 102
               

               Conread position:
               842-1031
               

               Cow position:
               chrX:41193480-41193668 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               143
               

               Alignm E-value:
               8e-33
               

               Alignm gaps (pig, cow):
               156, 101
               

               Conread position:
               842-1067
               

               Cow position:
               chrX:42018813-42019032 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               158
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               156, 101
               

               Conread position:
               844-1027
               

               Cow position:
               chrX:41998901-41999083 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               128
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               154, 99
               

               Conread position:
               844-1031
               

               Cow position:
               chrX:38203250-38203063 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               132
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               154, 99
               

               Conread position:
               855-1043
               

               Cow position:
               chrX:31780833-31781024 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               140
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               143, 88
               

               Conread position:
               858-1036
               

               Cow position:
               chrX:46228404-46228226 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               129
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               16, 23
               

               Conread position:
               861-1015
               

               Cow position:
               chrX:42480140-42480293 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               115
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               137, 82
Conread position:	834-1012
Cow position:	chr1:66465266-66465444 (view UCSC Genome Browser custom track)
Alignm length:	180
Alignm identity:	125
Alignm E-value:	2e-21
Alignm gaps (pig, cow):	164, 20
Conread position:	840-1026
Cow position:	chr1:31114831-31115018 (view UCSC Genome Browser custom track)
Alignm length:	188
Alignm identity:	132
Alignm E-value:	2e-25
Alignm gaps (pig, cow):	158, 0
Conread position:	844-1013
Cow position:	chr1:12861886-12862054 (view UCSC Genome Browser custom track)
Alignm length:	171
Alignm identity:	121
Alignm E-value:	5e-21
Alignm gaps (pig, cow):	159, 53
Conread position:	844-1034
Cow position:	chr1:46317462-46317652 (view UCSC Genome Browser custom track)
Alignm length:	192
Alignm identity:	132
Alignm E-value:	2e-22
Alignm gaps (pig, cow):	154, 98
Conread position:	857-1031
Cow position:	chr1:15947511-15947685 (view UCSC Genome Browser custom track)
Alignm length:	176
Alignm identity:	128
Alignm E-value:	3e-26
Alignm gaps (pig, cow):	141, 87
Conread position:	860-1015
Cow position:	chr1:12524822-12524976 (view UCSC Genome Browser custom track)
Alignm length:	157
Alignm identity:	114
Alignm E-value:	5e-21
Alignm gaps (pig, cow):	138, 10
Conread position:	869-996
Cow position:	chr1:19907884-19908010 (view UCSC Genome Browser custom track)
Alignm length:	129
Alignm identity:	100
Alignm E-value:	5e-21
Alignm gaps (pig, cow):	7, 12
Conread position:	836-1029
Cow position:	chr10:59667434-59667244 (view UCSC Genome Browser custom track)
Alignm length:	195
Alignm identity:	138
Alignm E-value:	4e-24
Alignm gaps (pig, cow):	156, 19
Conread position:	841-1034
Cow position:	chr10:64134195-64134388 (view UCSC Genome Browser custom track)
Alignm length:	195
Alignm identity:	132
Alignm E-value:	3e-21
Alignm gaps (pig, cow):	152, 102
Conread position:	842-1026
Cow position:	chr10:29738309-29738493 (view UCSC Genome Browser custom track)
Alignm length:	187
Alignm identity:	130
Alignm E-value:	3e-21
Alignm gaps (pig, cow):	77, 71
Conread position:	842-1036
Cow position:	chr10:39580897-39580704 (view UCSC Genome Browser custom track)
Alignm length:	197
Alignm identity:	145
Alignm E-value:	8e-30
Alignm gaps (pig, cow):	32, 40
Conread position:	843-999
Cow position:	chr10:9126276-9126432 (view UCSC Genome Browser custom track)
Alignm length:	158
Alignm identity:	114
Alignm E-value:	1e-21
Alignm gaps (pig, cow):	65, 106
Conread position:	843-1027
Cow position:	chr10:39574818-39574999 (view UCSC Genome Browser custom track)
Alignm length:	185
Alignm identity:	128
Alignm E-value:	1e-21
Alignm gaps (pig, cow):	100, 0
Conread position:	844-1031
Cow position:	chr10:44838697-44838882 (view UCSC Genome Browser custom track)
Alignm length:	189
Alignm identity:	136
Alignm E-value:	5e-26
Alignm gaps (pig, cow):	154, 36
Conread position:	845-1022
Cow position:	chr10:5289282-5289459 (view UCSC Genome Browser custom track)
Alignm length:	179
Alignm identity:	129
Alignm E-value:	5e-26
Alignm gaps (pig, cow):	153, 98
Conread position:	849-1022
Cow position:	chr10:55735957-55736130 (view UCSC Genome Browser custom track)
Alignm length:	176
Alignm identity:	127
Alignm E-value:	1e-23
Alignm gaps (pig, cow):	149, 31
Conread position:	857-1022
Cow position:	chr10:10089414-10089579 (view UCSC Genome Browser custom track)
Alignm length:	167
Alignm identity:	127
Alignm E-value:	8e-30
Alignm gaps (pig, cow):	140, 86
Conread position:	860-1026
Cow position:	chr10:52987390-52987224 (view UCSC Genome Browser custom track)
Alignm length:	168
Alignm identity:	120
Alignm E-value:	1e-22
Alignm gaps (pig, cow):	134, 83
Conread position:	842-995
Cow position:	chr11:9600271-9600119 (view UCSC Genome Browser custom track)
Alignm length:	155
Alignm identity:	113
Alignm E-value:	4e-21
Alignm gaps (pig, cow):	34, 39
Conread position:	842-1075
Cow position:	chr11:29542673-29542902 (view UCSC Genome Browser custom track)
Alignm length:	235
Alignm identity:	159
Alignm E-value:	2e-24
Alignm gaps (pig, cow):	157, 39