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Cow genome map

           
Conread name:
           
Ss1.1-Tra1-TCH01F120100.5
        

               
Conread position:
               
101-374
               

               
Cow position:
               
chr10:11959563-11959294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
37, 19
               

               
Conread position:
               
310-860
               

               
Cow position:
               
chr10:49308131-49308677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 69
               

               
Conread position:
               
348-523
               

               
Cow position:
               
chr10:24301140-24300963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
11, 86
               

               
Conread position:
               
362-774
               

               
Cow position:
               
chr10:20385365-20384959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
21, 42
               

               
Conread position:
               
362-839
               

               
Cow position:
               
chr10:10414423-10414890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
54, 21
               

               
Conread position:
               
369-944
               

               
Cow position:
               
chr10:41353307-41352737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
585
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 139
               

               
Conread position:
               
382-819
               

               
Cow position:
               
chr10:40747334-40747761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 67
               

               
Conread position:
               
382-821
               

               
Cow position:
               
chr10:44517104-44516666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 177
               

               
Conread position:
               
383-664
               

               
Cow position:
               
chr10:38524813-38525092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
33, 145
               

               
Conread position:
               
384-704
               

               
Cow position:
               
chr10:55284708-55285016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
245, 63
               

               
Conread position:
               
384-860
               

               
Cow position:
               
chr10:29068172-29068632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
67, 32
               

               
Conread position:
               
385-557
               

               
Cow position:
               
chr10:2076882-2076707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
31, 45
               

               
Conread position:
               
385-752
               

               
Cow position:
               
chr10:41512318-41511959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
31, 119
               

               
Conread position:
               
385-774
               

               
Cow position:
               
chr10:34319347-34318959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
31, 175
               

               
Conread position:
               
385-782
               

               
Cow position:
               
chr10:15864308-15863921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
31, 88
               

               
Conread position:
               
385-794
               

               
Cow position:
               
chr10:21902676-21902276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
31, 124
               

               
Conread position:
               
390-790
               

               
Cow position:
               
chr10:3546452-3546070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
26, 143
               

               
Conread position:
               
458-812
               

               
Cow position:
               
chr10:28892916-28892562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
280, 103
               

               
Conread position:
               
464-1174
               

               
Cow position:
               
chr10:42108127-42108843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
735
               

               
Alignm identity:
               
469
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 81
               

               
Conread position:
               
471-860
               

               
Cow position:
               
chr10:8329221-8328843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
122, 14
               

               
Conread position:
               
487-894
               

               
Cow position:
               
chr10:39583323-39582915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 72
               

               
Conread position:
               
647-848
               

               
Cow position:
               
chr10:67600559-67600766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
719-1084
               

               
Cow position:
               
chr10:42746753-42747122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
38, 69
               

               
Conread position:
               
869-1166
               

               
Cow position:
               
chr10:38525434-38525735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
78, 108
               

               
Conread position:
               
92-370
               

               
Cow position:
               
chr11:9977569-9977303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
139, 16
               

               
Conread position:
               
98-365
               

               
Cow position:
               
chr11:72817-72559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
126, 16
               

               
Conread position:
               
108-369
               

               
Cow position:
               
chr11:35130643-35130911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
46, 249
               

               
Conread position:
               
109-374
               

               
Cow position:
               
chr11:3254122-3253855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
45, 81
               

               
Conread position:
               
125-375
               

               
Cow position:
               
chr11:13581796-13581544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
29, 49
               

               
Conread position:
               
135-358
               

               
Cow position:
               
chr11:56672119-56672339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
14, 52
               

               
Conread position:
               
169-371
               

               
Cow position:
               
chr11:12047041-12047236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
28, 68
               

               
Conread position:
               
169-371
               

               
Cow position:
               
chr11:43009450-43009651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
38, 95
               

               
Conread position:
               
169-375
               

               
Cow position:
               
chr11:45547736-45547942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
34, 115
               

               
Conread position:
               
205-373
               

               
Cow position:
               
chr11:49838813-49838982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
25, 104
               

               
Conread position:
               
353-855
               

               
Cow position:
               
chr11:32285930-32285460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
246, 23
               

               
Conread position:
               
362-848
               

               
Cow position:
               
chr11:42427211-42427681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
54, 190
               

               
Conread position:
               
370-731
               

               
Cow position:
               
chr11:30134450-30134098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
46, 7
               

               
Conread position:
               
382-791
               

               
Cow position:
               
chr11:72015128-72015527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
34, 47
               

               
Conread position:
               
382-857
               

               
Cow position:
               
chr11:59629241-59628788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
74, 10
               

               
Conread position:
               
383-1070
               

               
Cow position:
               
chr11:28051762-28051116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
691
               

               
Alignm identity:
               
477
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 19
               

               
Conread position:
               
384-795
               

               
Cow position:
               
chr11:8249878-8249477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
32, 93
               

               
Conread position:
               
385-612
               

               
Cow position:
               
chr11:25178844-25179069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
31, 148
               

               
Conread position:
               
385-790
               

               
Cow position:
               
chr11:17911425-17911025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
31, 22
               

               
Conread position:
               
386-848
               

               
Cow position:
               
chr11:27282055-27282515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
30, 140
               

               
Conread position:
               
387-727
               

               
Cow position:
               
chr11:7684650-7684977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
29, 97
               

               
Conread position:
               
389-743
               

               
Cow position:
               
chr11:24241359-24241705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
11, 111
               

               
Conread position:
               
398-536
               

               
Cow position:
               
chr11:49077981-49077841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
435-726
               

               
Cow position:
               
chr11:13930991-13931276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
75, 91
               

               
Conread position:
               
442-860
               

               
Cow position:
               
chr11:10864590-10865012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
148, 122
               

               
Conread position:
               
465-819
               

               
Cow position:
               
chr11:21439910-21440262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
99, 63
               

               
Conread position:
               
97-370
               

               
Cow position:
               
chr12:47442527-47442795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
57, 24
               

               
Conread position:
               
198-383
               

               
Cow position:
               
chr12:23493897-23493709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
28, 54
               

               
Conread position:
               
380-550
               

               
Cow position:
               
chr12:21498547-21498718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
36, 156
               

               
Conread position:
               
385-747
               

               
Cow position:
               
chr12:26526051-26526407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
31, 170
               

               
Conread position:
               
386-774
               

               
Cow position:
               
chr12:346171-346562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
124, 27
               

               
Conread position:
               
402-850
               

               
Cow position:
               
chr12:15957011-15956567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
74, 16
               

               
Conread position:
               
171-371
               

               
Cow position:
               
chr13:24581815-24581613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
30, 84
               

               
Conread position:
               
175-364
               

               
Cow position:
               
chr13:1559334-1559523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
23, 117
               

               
Conread position:
               
385-782
               

               
Cow position:
               
chr13:34110544-34110928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
31, 66
               

               
Conread position:
               
385-805
               

               
Cow position:
               
chr13:60649523-60649930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
32, 17
               

               
Conread position:
               
386-557
               

               
Cow position:
               
chr13:33281014-33280842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
387-558
               

               
Cow position:
               
chr13:19744155-19744324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
29, 109
               

               
Conread position:
               
387-573
               

               
Cow position:
               
chr13:56315752-56315572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
29, 120
               

               
Conread position:
               
459-715
               

               
Cow position:
               
chr13:47858565-47858815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
111, 83
               

               
Conread position:
               
641-848
               

               
Cow position:
               
chr13:49194100-49193891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
154, 0
               

               
Conread position:
               
650-917
               

               
Cow position:
               
chr13:15081954-15081685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
13, 112
               

               
Conread position:
               
380-934
               

               
Cow position:
               
chr14:23531532-23530982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
567
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
38, 24
               

               
Conread position:
               
380-1176
               

               
Cow position:
               
chr14:38144504-38145299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
817
               

               
Alignm identity:
               
559
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 13
               

               
Conread position:
               
381-566
               

               
Cow position:
               
chr14:43550904-43551093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
381-702
               

               
Cow position:
               
chr14:45235010-45235329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
35, 24
               

               
Conread position:
               
382-551
               

               
Cow position:
               
chr14:47919747-47919918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
382-1171
               

               
Cow position:
               
chr14:46787857-46787065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
820
               

               
Alignm identity:
               
538
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 161
               

               
Conread position:
               
383-857
               

               
Cow position:
               
chr14:34773868-34774323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
33, 98
               

               
Conread position:
               
383-1135
               

               
Cow position:
               
chr14:34215319-34216072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
779
               

               
Alignm identity:
               
501
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 52
               

               
Conread position:
               
385-781
               

               
Cow position:
               
chr14:18415467-18415854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
244, 35
               

               
Conread position:
               
385-813
               

               
Cow position:
               
chr14:36185589-36185165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
31, 177
               

               
Conread position:
               
385-847
               

               
Cow position:
               
chr14:33400784-33401241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
31, 67
               

               
Conread position:
               
385-848
               

               
Cow position:
               
chr14:37415409-37414947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 179
               

               
Conread position:
               
385-857
               

               
Cow position:
               
chr14:44578843-44579317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
31, 168
               

               
Conread position:
               
386-848
               

               
Cow position:
               
chr14:45191007-45190554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
30, 50
               

               
Conread position:
               
395-722
               

               
Cow position:
               
chr14:38056632-38056310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
21, 140
               

               
Conread position:
               
396-794
               

               
Cow position:
               
chr14:35926757-35927140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
20, 59
               

               
Conread position:
               
402-775
               

               
Cow position:
               
chr14:36348752-36348386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
15, 63
               

               
Conread position:
               
429-706
               

               
Cow position:
               
chr14:44674502-44674772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
205, 60
               

               
Conread position:
               
453-790
               

               
Cow position:
               
chr14:35602530-35602864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
20, 84
               

               
Conread position:
               
598-884
               

               
Cow position:
               
chr14:47919920-47920204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
39, 61
               

               
Conread position:
               
619-854
               

               
Cow position:
               
chr14:47941084-47940848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
10, 92
               

               
Conread position:
               
98-336
               

               
Cow position:
               
chr15:8700045-8699810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
55, 10
               

               
Conread position:
               
98-367
               

               
Cow position:
               
chr15:20837667-20837932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
56, 16
               

               
Conread position:
               
98-369
               

               
Cow position:
               
chr15:5911071-5910795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
40, 60
               

               
Conread position:
               
98-376
               

               
Cow position:
               
chr15:53336282-53336550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
140, 10
               

               
Conread position:
               
98-387
               

               
Cow position:
               
chr15:6781184-6780899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
56, 10
               

               
Conread position:
               
114-370
               

               
Cow position:
               
chr15:13081830-13082090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
39, 109
               

               
Conread position:
               
120-371
               

               
Cow position:
               
chr15:12899558-12899812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
34, 112
               

               
Conread position:
               
134-377
               

               
Cow position:
               
chr15:14374256-14374010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
62, 12
               

               
Conread position:
               
162-357
               

               
Cow position:
               
chr15:39439727-39439530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
169-371
               

               
Cow position:
               
chr15:34394771-34394574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
28, 115
               

               
Conread position:
               
170-370
               

               
Cow position:
               
chr15:27595316-27595111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
40, 12
               

               
Conread position:
               
332-532
               

               
Cow position:
               
chr15:4894867-4895065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
40, 29
               

               
Conread position:
               
367-990
               

               
Cow position:
               
chr15:8406135-8406745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
632
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
49, 12
               

               
Conread position:
               
377-752
               

               
Cow position:
               
chr15:5076841-5076461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 310
               

               
Conread position:
               
381-731
               

               
Cow position:
               
chr15:6613416-6613758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
35, 132
               

               
Conread position:
               
384-549
               

               
Cow position:
               
chr15:36095035-36094873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
32, 23
               

               
Conread position:
               
385-559
               

               
Cow position:
               
chr15:11300085-11299913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
31, 50
               

               
Conread position:
               
385-573
               

               
Cow position:
               
chr15:12612617-12612805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
31, 151
               

               
Conread position:
               
385-745
               

               
Cow position:
               
chr15:40061413-40061756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
155, 22
               

               
Conread position:
               
385-877
               

               
Cow position:
               
chr15:12362590-12363078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
31, 103
               

               
Conread position:
               
389-821
               

               
Cow position:
               
chr15:42860841-42860417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
131, 138
               

               
Conread position:
               
392-804
               

               
Cow position:
               
chr15:4633027-4632628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
25, 145
               

               
Conread position:
               
394-794
               

               
Cow position:
               
chr15:23263965-23264353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
22, 69
               

               
Conread position:
               
36-378
               

               
Cow position:
               
chr16:48403288-48403629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
38, 49
               

               
Conread position:
               
98-375
               

               
Cow position:
               
chr16:36157715-36157985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
60, 10
               

               
Conread position:
               
162-374
               

               
Cow position:
               
chr16:26518181-26517971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
45, 7
               

               
Conread position:
               
382-579
               

               
Cow position:
               
chr16:5586914-5587109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
34, 60
               

               
Conread position:
               
382-664
               

               
Cow position:
               
chr16:333682-333968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
34, 122
               

               
Conread position:
               
382-783
               

               
Cow position:
               
chr16:13651728-13651334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
37, 154
               

               
Conread position:
               
382-993
               

               
Cow position:
               
chr16:20433104-20433716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
628
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 86
               

               
Conread position:
               
384-777
               

               
Cow position:
               
chr16:29030384-29030764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
49, 23
               

               
Conread position:
               
385-514
               

               
Cow position:
               
chr16:36234604-36234475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
30, 99
               

               
Conread position:
               
385-549
               

               
Cow position:
               
chr16:14439846-14440010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
31, 21
               

               
Conread position:
               
385-715
               

               
Cow position:
               
chr16:5747894-5747572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
31, 153
               

               
Conread position:
               
385-729
               

               
Cow position:
               
chr16:5886498-5886837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
31, 101
               

               
Conread position:
               
385-790
               

               
Cow position:
               
chr16:42052553-42052164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
31, 67
               

               
Conread position:
               
385-813
               

               
Cow position:
               
chr16:32933615-32934038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
31, 97
               

               
Conread position:
               
385-848
               

               
Cow position:
               
chr16:47779336-47779783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 167
               

               
Conread position:
               
385-860
               

               
Cow position:
               
chr16:5646853-5647319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
31, 50
               

               
Conread position:
               
385-1049
               

               
Cow position:
               
chr16:43749136-43748497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
671
               

               
Alignm identity:
               
424
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
33, 27
               

               
Conread position:
               
387-860
               

               
Cow position:
               
chr16:27716263-27715815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
29, 63
               

               
Conread position:
               
387-986
               

               
Cow position:
               
chr16:27002890-27003483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
607
               

               
Alignm identity:
               
400
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 118
               

               
Conread position:
               
401-821
               

               
Cow position:
               
chr16:25184129-25184548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
15, 158
               

               
Conread position:
               
455-789
               

               
Cow position:
               
chr16:55060893-55060558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
10, 49
               

               
Conread position:
               
644-840
               

               
Cow position:
               
chr16:15748190-15748386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
106, 117
               

               
Conread position:
               
99-374
               

               
Cow position:
               
chr17:31470837-31470572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
103, 9
               

               
Conread position:
               
114-371
               

               
Cow position:
               
chr17:20812938-20812679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
57, 91
               

               
Conread position:
               
152-364
               

               
Cow position:
               
chr17:10286469-10286254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
169-366
               

               
Cow position:
               
chr17:21352992-21353188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
46, 36
               

               
Conread position:
               
359-932
               

               
Cow position:
               
chr17:13494805-13495347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
577
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
275, 56
               

               
Conread position:
               
381-837
               

               
Cow position:
               
chr17:18191726-18192166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 26
               

               
Conread position:
               
385-848
               

               
Cow position:
               
chr17:31202370-31201911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
214, 95
               

               
Conread position:
               
386-794
               

               
Cow position:
               
chr17:38616168-38616570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
30, 21
               

               
Conread position:
               
387-848
               

               
Cow position:
               
chr17:2145486-2145937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
29, 56
               

               
Conread position:
               
388-806
               

               
Cow position:
               
chr17:20023183-20023592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
30, 25
               

               
Conread position:
               
454-860
               

               
Cow position:
               
chr17:2586520-2586924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
145, 97
               

               
Conread position:
               
534-795
               

               
Cow position:
               
chr17:1535534-1535276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
101, 16
               

               
Conread position:
               
98-371
               

               
Cow position:
               
chr18:33264235-33264497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
128, 10
               

               
Conread position:
               
100-395
               

               
Cow position:
               
chr18:29748269-29747979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
53, 8
               

               
Conread position:
               
130-368
               

               
Cow position:
               
chr18:40193194-40193428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
23, 43
               

               
Conread position:
               
170-370
               

               
Cow position:
               
chr18:31117-31314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
58, 12
               

               
Conread position:
               
170-371
               

               
Cow position:
               
chr18:53865624-53865424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
31, 47
               

               
Conread position:
               
385-520
               

               
Cow position:
               
chr18:46848702-46848566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
31, 51
               

               
Conread position:
               
385-729
               

               
Cow position:
               
chr18:45935816-45936151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
30, 126
               

               
Conread position:
               
385-743
               

               
Cow position:
               
chr18:54374793-54374439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
31, 169
               

               
Conread position:
               
385-849
               

               
Cow position:
               
chr18:48546431-48546887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
31, 180
               

               
Conread position:
               
386-712
               

               
Cow position:
               
chr18:11369072-11368749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
30, 176
               

               
Conread position:
               
641-848
               

               
Cow position:
               
chr18:24985727-24985518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
182, 0
               

               
Conread position:
               
98-358
               

               
Cow position:
               
chr19:53130061-53129798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
56, 23
               

               
Conread position:
               
99-298
               

               
Cow position:
               
chr19:5726176-5726376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
54, 9
               

               
Conread position:
               
110-352
               

               
Cow position:
               
chr19:15041624-15041861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
44, 30
               

               
Conread position:
               
162-366
               

               
Cow position:
               
chr19:30943267-30943472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
38, 130
               

               
Conread position:
               
207-371
               

               
Cow position:
               
chr19:45574419-45574584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
104, 15
               

               
Conread position:
               
380-794
               

               
Cow position:
               
chr19:6551153-6551556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
36, 15
               

               
Conread position:
               
381-848
               

               
Cow position:
               
chr19:30926042-30926503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 180
               

               
Conread position:
               
382-747
               

               
Cow position:
               
chr19:11522933-11522574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
34, 179
               

               
Conread position:
               
383-744
               

               
Cow position:
               
chr19:18488268-18487916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
32, 145
               

               
Conread position:
               
385-559
               

               
Cow position:
               
chr19:36474379-36474553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
31, 67
               

               
Conread position:
               
389-774
               

               
Cow position:
               
chr19:35316708-35316325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
28, 148
               

               
Conread position:
               
391-856
               

               
Cow position:
               
chr19:15951879-15952330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
155, 25
               

               
Conread position:
               
415-794
               

               
Cow position:
               
chr19:33652332-33652705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
13, 79
               

               
Conread position:
               
449-715
               

               
Cow position:
               
chr19:6714542-6714279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
158, 77
               

               
Conread position:
               
98-369
               

               
Cow position:
               
chr2:53374761-53375033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
43, 22
               

               
Conread position:
               
98-377
               

               
Cow position:
               
chr2:50456896-50456623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
77, 8
               

               
Conread position:
               
108-340
               

               
Cow position:
               
chr2:39254616-39254382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
50, 58
               

               
Conread position:
               
158-368
               

               
Cow position:
               
chr2:324858-324652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
13, 9
               

               
Conread position:
               
169-369
               

               
Cow position:
               
chr2:51365485-51365282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
176-380
               

               
Cow position:
               
chr2:46403226-46403024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
21, 60
               

               
Conread position:
               
193-371
               

               
Cow position:
               
chr2:51442938-51442755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
10, 51
               

               
Conread position:
               
307-784
               

               
Cow position:
               
chr2:6240280-6240756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
63, 16
               

               
Conread position:
               
321-775
               

               
Cow position:
               
chr2:37792782-37792348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
95, 15
               

               
Conread position:
               
335-860
               

               
Cow position:
               
chr2:36562421-36562939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
533
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
52, 11
               

               
Conread position:
               
373-790
               

               
Cow position:
               
chr2:7900011-7900421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
43, 12
               

               
Conread position:
               
373-1171
               

               
Cow position:
               
chr2:49404189-49404986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
817
               

               
Alignm identity:
               
534
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 70
               

               
Conread position:
               
382-860
               

               
Cow position:
               
chr2:30939987-30940451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
34, 16
               

               
Conread position:
               
382-860
               

               
Cow position:
               
chr2:60381208-60381695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
34, 131
               

               
Conread position:
               
383-793
               

               
Cow position:
               
chr2:63294770-63294367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
33, 24
               

               
Conread position:
               
385-556
               

               
Cow position:
               
chr2:36359198-36359369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
31, 117
               

               
Conread position:
               
385-708
               

               
Cow position:
               
chr2:46467722-46467407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
31, 60
               

               
Conread position:
               
385-745
               

               
Cow position:
               
chr2:74394609-74394256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
31, 67
               

               
Conread position:
               
385-753
               

               
Cow position:
               
chr2:75678043-75677686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
31, 150
               

               
Conread position:
               
385-848
               

               
Cow position:
               
chr2:42335770-42335317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
31, 84
               

               
Conread position:
               
385-860
               

               
Cow position:
               
chr2:73189620-73190075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
31, 94
               

               
Conread position:
               
386-819
               

               
Cow position:
               
chr2:26657319-26656893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 77
               

               
Conread position:
               
628-857
               

               
Cow position:
               
chr2:34614114-34614333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
148, 30
               

               
Conread position:
               
40-310
               

               
Cow position:
               
chr20:928268-928006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
100, 25
               

               
Conread position:
               
98-353
               

               
Cow position:
               
chr20:24480393-24480648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
62, 8
               

               
Conread position:
               
101-377
               

               
Cow position:
               
chr20:28301972-28302252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
56, 74
               

               
Conread position:
               
120-367
               

               
Cow position:
               
chr20:36786963-36786717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
24, 14
               

               
Conread position:
               
189-373
               

               
Cow position:
               
chr20:35767509-35767690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
74, 67
               

               
Conread position:
               
385-772
               

               
Cow position:
               
chr20:28591756-28592135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
35, 79
               

               
Conread position:
               
387-794
               

               
Cow position:
               
chr20:20250813-20250410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
23, 8
               

               
Conread position:
               
390-734
               

               
Cow position:
               
chr20:24513594-24513934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
26, 125
               

               
Conread position:
               
395-685
               

               
Cow position:
               
chr20:19028938-19028653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
21, 12
               

               
Conread position:
               
395-1046
               

               
Cow position:
               
chr20:8997720-8997093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
657
               

               
Alignm identity:
               
434
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 167
               

               
Conread position:
               
480-1060
               

               
Cow position:
               
chr20:32119686-32120243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
588
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 46
               

               
Conread position:
               
544-847
               

               
Cow position:
               
chr20:8750532-8750837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
14, 38
               

               
Conread position:
               
634-1045
               

               
Cow position:
               
chr20:29573657-29573239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
105, 18
               

               
Conread position:
               
94-328
               

               
Cow position:
               
chr21:47035345-47035109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
60, 27
               

               
Conread position:
               
96-354
               

               
Cow position:
               
chr21:39282108-39281855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
42, 62
               

               
Conread position:
               
98-359
               

               
Cow position:
               
chr21:10280371-10280636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
55, 11
               

               
Conread position:
               
127-367
               

               
Cow position:
               
chr21:4196930-4196690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
27, 157
               

               
Conread position:
               
134-384
               

               
Cow position:
               
chr21:13270072-13270321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
57, 135
               

               
Conread position:
               
152-368
               

               
Cow position:
               
chr21:4297865-4298081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
159, 43
               

               
Conread position:
               
188-357
               

               
Cow position:
               
chr21:31430215-31430392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
208-382
               

               
Cow position:
               
chr21:961776-961947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
12, 51
               

               
Conread position:
               
350-520
               

               
Cow position:
               
chr21:33391586-33391757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
44, 26
               

               
Conread position:
               
384-860
               

               
Cow position:
               
chr21:44285514-44285972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
245, 23
               

               
Conread position:
               
385-794
               

               
Cow position:
               
chr21:3982832-3983237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
91, 31
               

               
Conread position:
               
396-848
               

               
Cow position:
               
chr21:20746159-20745705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
20, 143
               

               
Conread position:
               
396-850
               

               
Cow position:
               
chr21:35577626-35577181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
20, 76
               

               
Conread position:
               
401-848
               

               
Cow position:
               
chr21:15273676-15274117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
15, 109
               

               
Conread position:
               
101-379
               

               
Cow position:
               
chr22:8486324-8486602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
53, 14
               

               
Conread position:
               
351-848
               

               
Cow position:
               
chr22:35687537-35687042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
18, 121
               

               
Conread position:
               
370-533
               

               
Cow position:
               
chr22:28660736-28660570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
44, 66
               

               
Conread position:
               
378-558
               

               
Cow position:
               
chr22:19587576-19587395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
38, 151
               

               
Conread position:
               
385-553
               

               
Cow position:
               
chr22:33208647-33208812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
31, 41
               

               
Conread position:
               
385-623
               

               
Cow position:
               
chr22:14826667-14826430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
31, 25
               

               
Conread position:
               
385-676
               

               
Cow position:
               
chr22:15493464-15493745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
31, 171
               

               
Conread position:
               
385-681
               

               
Cow position:
               
chr22:27334085-27334373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
27, 175
               

               
Conread position:
               
385-783
               

               
Cow position:
               
chr22:9463917-9464300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
30, 23
               

               
Conread position:
               
385-848
               

               
Cow position:
               
chr22:35142630-35143086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
31, 160
               

               
Conread position:
               
386-993
               

               
Cow position:
               
chr22:23808512-23807914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
614
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 173
               

               
Conread position:
               
395-795
               

               
Cow position:
               
chr22:44473361-44473768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
29, 144
               

               
Conread position:
               
530-860
               

               
Cow position:
               
chr22:33349704-33350033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
69, 30
               

               
Conread position:
               
596-1098
               

               
Cow position:
               
chr22:28660528-28660018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
44, 10
               

               
Conread position:
               
134-395
               

               
Cow position:
               
chr23:23842758-23843017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
17, 25
               

               
Conread position:
               
167-367
               

               
Cow position:
               
chr23:8302754-8302554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
6, 93
               

               
Conread position:
               
358-1080
               

               
Cow position:
               
chr23:19016246-19016959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
733
               

               
Alignm identity:
               
478
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 108
               

               
Conread position:
               
366-735
               

               
Cow position:
               
chr23:3492073-3491724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
50, 7
               

               
Conread position:
               
377-790
               

               
Cow position:
               
chr23:29475189-29474787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
39, 90
               

               
Conread position:
               
385-793
               

               
Cow position:
               
chr23:16484084-16483684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
31, 153
               

               
Conread position:
               
385-848
               

               
Cow position:
               
chr23:2018830-2019283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 150
               

               
Conread position:
               
385-860
               

               
Cow position:
               
chr23:16054200-16054673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
31, 93
               

               
Conread position:
               
387-848
               

               
Cow position:
               
chr23:16618627-16618182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
29, 57
               

               
Conread position:
               
395-850
               

               
Cow position:
               
chr23:11278291-11278737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
23, 41
               

               
Conread position:
               
76-369
               

               
Cow position:
               
chr24:39666911-39666623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
20, 39
               

               
Conread position:
               
98-369
               

               
Cow position:
               
chr24:26798834-26798565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
8, 18
               

               
Conread position:
               
382-745
               

               
Cow position:
               
chr24:38289972-38290326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
226, 46
               

               
Conread position:
               
382-846
               

               
Cow position:
               
chr24:12290866-12290412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
433, 34
               

               
Conread position:
               
382-848
               

               
Cow position:
               
chr24:38005761-38005317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
34, 61
               

               
Conread position:
               
385-745
               

               
Cow position:
               
chr24:38633720-38634074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
27, 82
               

               
Conread position:
               
387-753
               

               
Cow position:
               
chr24:32329433-32329786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
29, 9
               

               
Conread position:
               
610-848
               

               
Cow position:
               
chr24:17304898-17304658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
26, 153
               

               
Conread position:
               
170-371
               

               
Cow position:
               
chr25:18014727-18014528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
15, 113
               

               
Conread position:
               
185-360
               

               
Cow position:
               
chr25:11523413-11523590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
18, 169
               

               
Conread position:
               
382-745
               

               
Cow position:
               
chr25:15362546-15362904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
34, 178
               

               
Conread position:
               
461-794
               

               
Cow position:
               
chr25:12836910-12836582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 103
               

               
Conread position:
               
542-774
               

               
Cow position:
               
chr25:11266335-11266565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
93, 18
               

               
Conread position:
               
607-1130
               

               
Cow position:
               
chr25:18256902-18256377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
533
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 17
               

               
Conread position:
               
1-200
               

               
Cow position:
               
chr26:35300076-35299887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
91, 14
               

               
Conread position:
               
263-704
               

               
Cow position:
               
chr26:35299861-35299444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 50
               

               
Conread position:
               
341-1118
               

               
Cow position:
               
chr26:6515057-6515830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
797
               

               
Alignm identity:
               
511
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 167
               

               
Conread position:
               
384-793
               

               
Cow position:
               
chr26:12583521-12583110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
32, 165
               

               
Conread position:
               
385-789
               

               
Cow position:
               
chr26:1318193-1317794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
31, 91
               

               
Conread position:
               
385-819
               

               
Cow position:
               
chr26:12662839-12663270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
31, 101
               

               
Conread position:
               
395-846
               

               
Cow position:
               
chr26:14511482-14511038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
21, 64
               

               
Conread position:
               
382-690
               

               
Cow position:
               
chr27:5905635-5905936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
241, 34
               

               
Conread position:
               
385-848
               

               
Cow position:
               
chr27:31270001-31270449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
74, 35
               

               
Conread position:
               
91-355
               

               
Cow position:
               
chr28:11027434-11027173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
55, 83
               

               
Conread position:
               
98-369
               

               
Cow position:
               
chr28:5401885-5401623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
56, 11
               

               
Conread position:
               
98-369
               

               
Cow position:
               
chr28:29448017-29447753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
56, 10
               

               
Conread position:
               
115-369
               

               
Cow position:
               
chr28:27126660-27126907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
88, 23
               

               
Conread position:
               
126-375
               

               
Cow position:
               
chr28:28435809-28436058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
6, 52
               

               
Conread position:
               
364-814
               

               
Cow position:
               
chr28:21927859-21928301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
52, 21
               

               
Conread position:
               
378-1151
               

               
Cow position:
               
chr28:6659009-6658235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
795
               

               
Alignm identity:
               
519
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 154
               

               
Conread position:
               
381-1137
               

               
Cow position:
               
chr28:29093647-29092908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
765
               

               
Alignm identity:
               
511
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 55
               

               
Conread position:
               
384-585
               

               
Cow position:
               
chr28:7936190-7936382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
32, 53
               

               
Conread position:
               
385-500
               

               
Cow position:
               
chr28:12653083-12652967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
385-828
               

               
Cow position:
               
chr28:8335020-8335443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
31, 98
               

               
Conread position:
               
385-848
               

               
Cow position:
               
chr28:22543420-22543880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 101
               

               
Conread position:
               
386-884
               

               
Cow position:
               
chr28:6232986-6232503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
30, 37
               

               
Conread position:
               
387-790
               

               
Cow position:
               
chr28:10652272-10651879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
29, 139
               

               
Conread position:
               
404-764
               

               
Cow position:
               
chr28:28876774-28876427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
415-793
               

               
Cow position:
               
chr28:26005911-26006282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
184, 45
               

               
Conread position:
               
506-821
               

               
Cow position:
               
chr28:12652345-12652037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
85, 9
               

               
Conread position:
               
95-370
               

               
Cow position:
               
chr29:32948588-32948869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
19, 155
               

               
Conread position:
               
114-367
               

               
Cow position:
               
chr29:26463885-26463638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
107, 24
               

               
Conread position:
               
132-375
               

               
Cow position:
               
chr29:32576739-32576490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
22, 44
               

               
Conread position:
               
353-848
               

               
Cow position:
               
chr29:4216398-4216878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
63, 17
               

               
Conread position:
               
382-783
               

               
Cow position:
               
chr29:6470253-6470643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
34, 48
               

               
Conread position:
               
384-857
               

               
Cow position:
               
chr29:11840231-11840701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
32, 152
               

               
Conread position:
               
386-795
               

               
Cow position:
               
chr29:34753866-34753461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
30, 11
               

               
Conread position:
               
389-797
               

               
Cow position:
               
chr29:129931-130336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
27, 45
               

               
Conread position:
               
394-848
               

               
Cow position:
               
chr29:13647105-13647560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
24, 167
               

               
Conread position:
               
437-857
               

               
Cow position:
               
chr29:6770929-6771350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
104, 52
               

               
Conread position:
               
40-367
               

               
Cow position:
               
chr3:31564793-31565118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
56, 10
               

               
Conread position:
               
70-390
               

               
Cow position:
               
chr3:5501421-5501752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
26, 53
               

               
Conread position:
               
89-366
               

               
Cow position:
               
chr3:25500377-25500100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
64, 17
               

               
Conread position:
               
95-371
               

               
Cow position:
               
chr3:15733048-15732767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
68, 44
               

               
Conread position:
               
96-368
               

               
Cow position:
               
chr3:3771717-3771449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
130, 25
               

               
Conread position:
               
151-371
               

               
Cow position:
               
chr3:8237817-8238038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
52, 186
               

               
Conread position:
               
354-622
               

               
Cow position:
               
chr3:52688836-52689101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
62, 19
               

               
Conread position:
               
377-821
               

               
Cow position:
               
chr3:3908617-3908185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
39, 9
               

               
Conread position:
               
382-848
               

               
Cow position:
               
chr3:52860223-52860682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
34, 145
               

               
Conread position:
               
382-860
               

               
Cow position:
               
chr3:60211850-60211378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
34, 124
               

               
Conread position:
               
382-1150
               

               
Cow position:
               
chr3:45776942-45776163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
789
               

               
Alignm identity:
               
543
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 12
               

               
Conread position:
               
383-857
               

               
Cow position:
               
chr3:47298880-47299351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 144
               

               
Conread position:
               
385-555
               

               
Cow position:
               
chr3:34897086-34896915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
385-558
               

               
Cow position:
               
chr3:77441473-77441646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
31, 141
               

               
Conread position:
               
385-751
               

               
Cow position:
               
chr3:61275738-61276097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
31, 80
               

               
Conread position:
               
385-774
               

               
Cow position:
               
chr3:6879821-6879436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
20, 96
               

               
Conread position:
               
385-847
               

               
Cow position:
               
chr3:27880535-27880079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 176
               

               
Conread position:
               
385-859
               

               
Cow position:
               
chr3:30927936-30928402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 17
               

               
Conread position:
               
387-743
               

               
Cow position:
               
chr3:27631791-27632149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
29, 196
               

               
Conread position:
               
398-860
               

               
Cow position:
               
chr3:54344039-54343566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
18, 85
               

               
Conread position:
               
409-796
               

               
Cow position:
               
chr3:83701833-83701451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
7, 102
               

               
Conread position:
               
594-796
               

               
Cow position:
               
chr3:56706525-56706324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
35, 48
               

               
Conread position:
               
98-371
               

               
Cow position:
               
chr4:49892776-49893047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
57, 10
               

               
Conread position:
               
100-368
               

               
Cow position:
               
chr4:27770228-27770488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
53, 8
               

               
Conread position:
               
114-371
               

               
Cow position:
               
chr4:47148228-47148493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
39, 53
               

               
Conread position:
               
167-367
               

               
Cow position:
               
chr4:6255885-6256084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
29, 21
               

               
Conread position:
               
185-363
               

               
Cow position:
               
chr4:38928308-38928485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
23, 121
               

               
Conread position:
               
205-370
               

               
Cow position:
               
chr4:59517729-59517565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
106, 55
               

               
Conread position:
               
374-774
               

               
Cow position:
               
chr4:54966165-54966557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
42, 30
               

               
Conread position:
               
377-536
               

               
Cow position:
               
chr4:51408548-51408389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
39, 155
               

               
Conread position:
               
380-565
               

               
Cow position:
               
chr4:14549427-14549612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
5, 105
               

               
Conread position:
               
385-848
               

               
Cow position:
               
chr4:25733948-25734404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
29, 100
               

               
Conread position:
               
387-848
               

               
Cow position:
               
chr4:41779160-41778698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
29, 45
               

               
Conread position:
               
387-1078
               

               
Cow position:
               
chr4:59358531-59357856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
702
               

               
Alignm identity:
               
431
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
30, 56
               

               
Conread position:
               
40-404
               

               
Cow position:
               
chr5:31544541-31544890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
104, 29
               

               
Conread position:
               
94-371
               

               
Cow position:
               
chr5:44216156-44216434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
49, 27
               

               
Conread position:
               
99-371
               

               
Cow position:
               
chr5:39416877-39417158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
44, 9
               

               
Conread position:
               
152-369
               

               
Cow position:
               
chr5:15682862-15682643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
177-371
               

               
Cow position:
               
chr5:53614045-53614237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
17, 52
               

               
Conread position:
               
183-371
               

               
Cow position:
               
chr5:68472210-68472020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
33, 178
               

               
Conread position:
               
334-532
               

               
Cow position:
               
chr5:29125167-29124967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
24, 102
               

               
Conread position:
               
357-848
               

               
Cow position:
               
chr5:14879002-14878510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
59, 18
               

               
Conread position:
               
378-520
               

               
Cow position:
               
chr5:27844359-27844216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
380-865
               

               
Cow position:
               
chr5:27486306-27486780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
5, 52
               

               
Conread position:
               
382-744
               

               
Cow position:
               
chr5:49128038-49128392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
34, 49
               

               
Conread position:
               
382-848
               

               
Cow position:
               
chr5:51950499-51950957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
34, 115
               

               
Conread position:
               
382-859
               

               
Cow position:
               
chr5:24149472-24149951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 178
               

               
Conread position:
               
382-1088
               

               
Cow position:
               
chr5:7371574-7370870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
718
               

               
Alignm identity:
               
511
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 177
               

               
Conread position:
               
384-656
               

               
Cow position:
               
chr5:57906644-57906909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
245, 29
               

               
Conread position:
               
384-821
               

               
Cow position:
               
chr5:6185395-6185818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
32, 64
               

               
Conread position:
               
384-860
               

               
Cow position:
               
chr5:50158610-50159071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
32, 23
               

               
Conread position:
               
385-555
               

               
Cow position:
               
chr5:61564291-61564461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
31, 99
               

               
Conread position:
               
385-735
               

               
Cow position:
               
chr5:7504810-7504464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
31, 22
               

               
Conread position:
               
385-735
               

               
Cow position:
               
chr5:52432061-52432404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
26, 47
               

               
Conread position:
               
385-783
               

               
Cow position:
               
chr5:27957749-27958139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
31, 70
               

               
Conread position:
               
385-793
               

               
Cow position:
               
chr5:39248589-39248190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
31, 22
               

               
Conread position:
               
385-794
               

               
Cow position:
               
chr5:27062404-27062005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
31, 45
               

               
Conread position:
               
385-833
               

               
Cow position:
               
chr5:26071641-26071199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
244, 22
               

               
Conread position:
               
385-848
               

               
Cow position:
               
chr5:658511-658975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
31, 117
               

               
Conread position:
               
385-848
               

               
Cow position:
               
chr5:29439388-29438939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
31, 64
               

               
Conread position:
               
385-850
               

               
Cow position:
               
chr5:27684606-27684127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 47
               

               
Conread position:
               
385-860
               

               
Cow position:
               
chr5:34166032-34166498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
36, 70
               

               
Conread position:
               
387-772
               

               
Cow position:
               
chr5:31996655-31997033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
242, 149
               

               
Conread position:
               
454-797
               

               
Cow position:
               
chr5:4351636-4351978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
56, 63
               

               
Conread position:
               
605-943
               

               
Cow position:
               
chr5:27843013-27842672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
21, 67
               

               
Conread position:
               
633-935
               

               
Cow position:
               
chr5:3552167-3551869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
79, 101
               

               
Conread position:
               
636-1021
               

               
Cow position:
               
chr5:58096247-58096632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
107, 19
               

               
Conread position:
               
745-1045
               

               
Cow position:
               
chr5:54110023-54110319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
78, 197
               

               
Conread position:
               
750-1176
               

               
Cow position:
               
chr5:33994039-33994469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
73, 121
               

               
Conread position:
               
99-367
               

               
Cow position:
               
chr6:50138039-50138310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
48, 7
               

               
Conread position:
               
183-370
               

               
Cow position:
               
chr6:11740287-11740476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
12, 158
               

               
Conread position:
               
212-381
               

               
Cow position:
               
chr6:6814910-6815080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
147, 98
               

               
Conread position:
               
319-549
               

               
Cow position:
               
chr6:51188982-51189211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
10, 29
               

               
Conread position:
               
380-875
               

               
Cow position:
               
chr6:1890005-1889513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
15, 20
               

               
Conread position:
               
382-789
               

               
Cow position:
               
chr6:16666166-16666554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
34, 46
               

               
Conread position:
               
382-935
               

               
Cow position:
               
chr6:25355809-25356357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
566
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 87
               

               
Conread position:
               
382-939
               

               
Cow position:
               
chr6:66537571-66538129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
574
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 59
               

               
Conread position:
               
384-876
               

               
Cow position:
               
chr6:60510165-60510657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
32, 135
               

               
Conread position:
               
385-795
               

               
Cow position:
               
chr6:38230698-38231099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
31, 22
               

               
Conread position:
               
385-850
               

               
Cow position:
               
chr6:41151491-41151951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
30, 174
               

               
Conread position:
               
386-712
               

               
Cow position:
               
chr6:47957535-47957860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
30, 15
               

               
Conread position:
               
387-790
               

               
Cow position:
               
chr6:43808698-43808308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
29, 141
               

               
Conread position:
               
396-848
               

               
Cow position:
               
chr6:48366520-48366958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
197, 20
               

               
Conread position:
               
405-703
               

               
Cow position:
               
chr6:12679462-12679758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
11, 154
               

               
Conread position:
               
639-1045
               

               
Cow position:
               
chr6:18575022-18574622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
118, 48
               

               
Conread position:
               
98-355
               

               
Cow position:
               
chr7:67506134-67506394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
56, 16
               

               
Conread position:
               
98-371
               

               
Cow position:
               
chr7:986520-986787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
135, 8
               

               
Conread position:
               
98-371
               

               
Cow position:
               
chr7:28635153-28635423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
47, 8
               

               
Conread position:
               
99-371
               

               
Cow position:
               
chr7:31634108-31634379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
99, 9
               

               
Conread position:
               
177-371
               

               
Cow position:
               
chr7:32191765-32191574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
20, 76
               

               
Conread position:
               
205-371
               

               
Cow position:
               
chr7:22661007-22660840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
17, 63
               

               
Conread position:
               
339-726
               

               
Cow position:
               
chr7:20108564-20108179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
37, 20
               

               
Conread position:
               
377-1077
               

               
Cow position:
               
chr7:11424824-11424120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
716
               

               
Alignm identity:
               
493
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 183
               

               
Conread position:
               
380-864
               

               
Cow position:
               
chr7:26929951-26929470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
34, 64
               

               
Conread position:
               
382-572
               

               
Cow position:
               
chr7:62681829-62681644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
35, 75
               

               
Conread position:
               
382-664
               

               
Cow position:
               
chr7:59135095-59135377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
34, 48
               

               
Conread position:
               
382-759
               

               
Cow position:
               
chr7:31863315-31863688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
34, 145
               

               
Conread position:
               
383-857
               

               
Cow position:
               
chr7:749517-749984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
33, 122
               

               
Conread position:
               
385-761
               

               
Cow position:
               
chr7:22678393-22678772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
31, 108
               

               
Conread position:
               
385-821
               

               
Cow position:
               
chr7:24484993-24485424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
31, 51
               

               
Conread position:
               
385-859
               

               
Cow position:
               
chr7:25248741-25249212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
28, 100
               

               
Conread position:
               
387-684
               

               
Cow position:
               
chr7:27558876-27559167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
29, 140
               

               
Conread position:
               
392-793
               

               
Cow position:
               
chr7:63962745-63962334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
24, 89
               

               
Conread position:
               
393-706
               

               
Cow position:
               
chr7:47115199-47114888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
24, 167
               

               
Conread position:
               
467-848
               

               
Cow position:
               
chr7:37020424-37020803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
102, 29
               

               
Conread position:
               
468-860
               

               
Cow position:
               
chr7:18446601-18446215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
175, 17
               

               
Conread position:
               
634-850
               

               
Cow position:
               
chr7:54868822-54868603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
150, 0
               

               
Conread position:
               
89-383
               

               
Cow position:
               
chr8:2550728-2551028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
59, 40
               

               
Conread position:
               
98-332
               

               
Cow position:
               
chr8:47743928-47744162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
55, 10
               

               
Conread position:
               
98-343
               

               
Cow position:
               
chr8:29276982-29276729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
56, 16
               

               
Conread position:
               
98-392
               

               
Cow position:
               
chr8:40422261-40422564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
56, 10
               

               
Conread position:
               
99-371
               

               
Cow position:
               
chr8:56464268-56464530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
104, 7
               

               
Conread position:
               
177-371
               

               
Cow position:
               
chr8:27377917-27378114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
8, 187
               

               
Conread position:
               
382-857
               

               
Cow position:
               
chr8:1976249-1976710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
34, 89
               

               
Conread position:
               
383-557
               

               
Cow position:
               
chr8:48369565-48369740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
385-680
               

               
Cow position:
               
chr8:12714625-12714916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
31, 167
               

               
Conread position:
               
385-775
               

               
Cow position:
               
chr8:32484015-32483632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 173
               

               
Conread position:
               
385-794
               

               
Cow position:
               
chr8:45695691-45695287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
33, 153
               

               
Conread position:
               
386-794
               

               
Cow position:
               
chr8:21204414-21204811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
100, 21
               

               
Conread position:
               
443-744
               

               
Cow position:
               
chr8:12545615-12545314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
20, 44
               

               
Conread position:
               
98-371
               

               
Cow position:
               
chr9:7534888-7535164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
61, 10
               

               
Conread position:
               
116-371
               

               
Cow position:
               
chr9:34440057-34439798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
28, 87
               

               
Conread position:
               
180-371
               

               
Cow position:
               
chr9:12373336-12373530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
193-371
               

               
Cow position:
               
chr9:22702419-22702237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
349-780
               

               
Cow position:
               
chr9:26089509-26089089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
67, 16
               

               
Conread position:
               
377-860
               

               
Cow position:
               
chr9:4029382-4028902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 30
               

               
Conread position:
               
378-1143
               

               
Cow position:
               
chr9:14359701-14358962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
785
               

               
Alignm identity:
               
515
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 187
               

               
Conread position:
               
381-744
               

               
Cow position:
               
chr9:14962994-14962640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
35, 145
               

               
Conread position:
               
384-498
               

               
Cow position:
               
chr9:9633534-9633649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
385-561
               

               
Cow position:
               
chr9:39991300-39991474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
31, 133
               

               
Conread position:
               
385-813
               

               
Cow position:
               
chr9:2006745-2006327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
214, 31
               

               
Conread position:
               
385-845
               

               
Cow position:
               
chr9:2112254-2112705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
31, 101
               

               
Conread position:
               
385-848
               

               
Cow position:
               
chr9:19076898-19077367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
29, 51
               

               
Conread position:
               
385-863
               

               
Cow position:
               
chr9:59423823-59424297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
15, 175
               

               
Conread position:
               
386-797
               

               
Cow position:
               
chr9:52568624-52569030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
30, 134
               

               
Conread position:
               
416-848
               

               
Cow position:
               
chr9:34109425-34109003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
42, 47
               

               
Conread position:
               
423-860
               

               
Cow position:
               
chr9:26713977-26713547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
202, 137
               

               
Conread position:
               
37-358
               

               
Cow position:
               
chrX:18869133-18868796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
52, 32
               

               
Conread position:
               
87-376
               

               
Cow position:
               
chrX:27354669-27354393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
66, 19
               

               
Conread position:
               
98-367
               

               
Cow position:
               
chrX:32010041-32009768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
56, 10
               

               
Conread position:
               
98-370
               

               
Cow position:
               
chrX:18136138-18135876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
43, 16
               

               
Conread position:
               
113-475
               

               
Cow position:
               
chrX:36646158-36646518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
42, 59
               

               
Conread position:
               
129-370
               

               
Cow position:
               
chrX:1697578-1697335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
15, 40
               

               
Conread position:
               
136-369
               

               
Cow position:
               
chrX:20701587-20701350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
13, 117
               

               
Conread position:
               
162-382
               

               
Cow position:
               
chrX:29867760-29867536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
31, 5
               

               
Conread position:
               
170-371
               

               
Cow position:
               
chrX:27677591-27677794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
28, 198
               

               
Conread position:
               
197-371
               

               
Cow position:
               
chrX:7887054-7886874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
206-343
               

               
Cow position:
               
chrX:18939863-18939725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
14, 31
               

               
Conread position:
               
382-572
               

               
Cow position:
               
chrX:24140882-24140693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
34, 170
               

               
Conread position:
               
384-848
               

               
Cow position:
               
chrX:22133724-22133263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 23
               

               
Conread position:
               
385-537
               

               
Cow position:
               
chrX:40115983-40116135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
31, 101
               

               
Conread position:
               
385-728
               

               
Cow position:
               
chrX:34986538-34986871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
31, 95
               

               
Conread position:
               
385-743
               

               
Cow position:
               
chrX:31033687-31034036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
31, 22
               

               
Conread position:
               
385-794
               

               
Cow position:
               
chrX:17672623-17672220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
31, 101
               

               
Conread position:
               
385-848
               

               
Cow position:
               
chrX:13050382-13050841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
31, 20
               

               
Conread position:
               
387-729
               

               
Cow position:
               
chrX:11742192-11742524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
29, 63
               

               
Conread position:
               
396-860
               

               
Cow position:
               
chrX:30372111-30371662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
20, 55
               

               
Conread position:
               
430-864
               

               
Cow position:
               
chrX:24374946-24375375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
206, 105
               

               
Conread position:
               
595-794
               

               
Cow position:
               
chrX:21272304-21272109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
38, 12