Cow genome map
| Conread name: | Ss1.1-Tra1-TCH01H120011.5.5 |
| Conread position: | 267-661 |
| Cow position: | chr13:19897105-19897500 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 10 |
| Conread position: | 816-981 |
| Cow position: | chr13:19900947-19901112 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1106-1327 |
| Cow position: | chr13:19902269-19902490 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 166 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 348-643 |
| Cow position: | chr19:37394104-37394399 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 816-1003 |
| Cow position: | chr19:37396469-37396659 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 167, 0 |
| Conread position: | 1106-1327 |
| Cow position: | chr19:37398255-37398476 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 56 |
| Conread position: | 11-661 |
| Cow position: | chr2:64444186-64443541 (view UCSC Genome Browser custom track) |
| Alignm length: | 651 |
| Alignm identity: | 611 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 721-818 |
| Cow position: | chr2:64442375-64442278 (view UCSC Genome Browser custom track) |
| Alignm length: | 98 |
| Alignm identity: | 95 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 816-982 |
| Cow position: | chr2:64442161-64441995 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 153 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 975-1117 |
| Cow position: | chr2:64441832-64441691 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 129 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 1106-1327 |
| Cow position: | chr2:64441454-64441233 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1369-1455 |
| Cow position: | chr2:64438216-64438130 (view UCSC Genome Browser custom track) |
| Alignm length: | 87 |
| Alignm identity: | 82 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1452-2280 |
| Cow position: | chr2:64437922-64437120 (view UCSC Genome Browser custom track) |
| Alignm length: | 833 |
| Alignm identity: | 700 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 218 |
| Conread position: | 346-1175 |
| Cow position: | chr26:17694497-17695341 (view UCSC Genome Browser custom track) |
| Alignm length: | 851 |
| Alignm identity: | 546 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 236 |
| Conread position: | 851-982 |
| Cow position: | chr5:24472054-24472182 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 1106-1327 |
| Cow position: | chr5:24472518-24472739 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1166-1327 |
| Cow position: | chr5:19986788-19986626 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 1166-1327 |
| Cow position: | chr5:20005586-20005424 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 1166-1327 |
| Cow position: | chr5:20023217-20023055 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 1166-1327 |
| Cow position: | chr5:20057248-20057086 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 116 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 1172-1327 |
| Cow position: | chr5:20374622-20374467 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1173-1327 |
| Cow position: | chr5:19570182-19570028 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1173-1327 |
| Cow position: | chr5:19881403-19881249 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1177-1327 |
| Cow position: | chr5:19818700-19818850 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 108 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1177-1327 |
| Cow position: | chr5:20259032-20258882 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 109 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1189-1327 |
| Cow position: | chr5:19897594-19897456 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1190-1327 |
| Cow position: | chr5:19849053-19848916 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1190-1327 |
| Cow position: | chr5:20131379-20131242 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1190-1327 |
| Cow position: | chr5:20191460-20191323 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1191-1327 |
| Cow position: | chr5:20074310-20074174 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 101 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1213-1327 |
| Cow position: | chr5:19746451-19746565 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 91 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1213-1327 |
| Cow position: | chr5:20093747-20093633 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 91 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1213-1327 |
| Cow position: | chr5:20227262-20227148 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 93 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1213-1327 |
| Cow position: | chr5:20281183-20281069 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1213-1327 |
| Cow position: | chr5:20298255-20298141 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1213-1327 |
| Cow position: | chr5:20314649-20314535 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 340-1144 |
| Cow position: | chr8:32205110-32205923 (view UCSC Genome Browser custom track) |
| Alignm length: | 817 |
| Alignm identity: | 525 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 256 |
| Conread position: | 395-1175 |
| Cow position: | chr8:32240517-32239728 (view UCSC Genome Browser custom track) |
| Alignm length: | 795 |
| Alignm identity: | 487 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 139 |