Cow genome map
| Conread name: | Ss1.1-Utr1-UTR010005B06.5 |
| Conread position: | 105-430 |
| Cow position: | chr10:9029980-9029651 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 32, 152 |
| Conread position: | 107-428 |
| Cow position: | chr10:19044347-19044031 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 120, 38 |
| Conread position: | 171-430 |
| Cow position: | chr10:5800096-5799839 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 56, 46 |
| Conread position: | 238-430 |
| Cow position: | chr10:25966142-25966332 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 34, 49 |
| Conread position: | 252-423 |
| Cow position: | chr10:24758158-24758328 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 66, 75 |
| Conread position: | 2-346 |
| Cow position: | chr11:11320651-11320307 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 248 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 94, 66 |
| Conread position: | 5-321 |
| Cow position: | chr11:65172591-65172910 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 41, 16 |
| Conread position: | 1-356 |
| Cow position: | chr12:31808571-31808201 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 247 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 56, 22 |
| Conread position: | 11-291 |
| Cow position: | chr12:12195720-12195440 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 200 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 89, 16 |
| Conread position: | 105-357 |
| Cow position: | chr12:28676845-28677108 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 32, 126 |
| Conread position: | 176-314 |
| Cow position: | chr12:26361790-26361926 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 51, 70 |
| Conread position: | 1-342 |
| Cow position: | chr13:33254453-33254119 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 135, 151 |
| Conread position: | 104-360 |
| Cow position: | chr13:49857250-49856994 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 33, 26 |
| Conread position: | 176-326 |
| Cow position: | chr13:60287490-60287639 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 172-379 |
| Cow position: | chr14:6726178-6725974 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 30, 65 |
| Conread position: | 207-430 |
| Cow position: | chr14:31366176-31365956 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 20, 34 |
| Conread position: | 179-433 |
| Cow position: | chr15:48315674-48315425 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 48, 60 |
| Conread position: | 262-430 |
| Cow position: | chr15:13981926-13982091 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 67, 98 |
| Conread position: | 105-357 |
| Cow position: | chr16:25596756-25597010 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 32, 108 |
| Conread position: | 171-326 |
| Cow position: | chr16:27970654-27970500 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 56, 29 |
| Conread position: | 176-430 |
| Cow position: | chr16:46126709-46126457 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 151, 24 |
| Conread position: | 200-430 |
| Cow position: | chr16:52456154-52456385 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 19, 178 |
| Conread position: | 147-425 |
| Cow position: | chr17:11684423-11684144 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 192 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 19, 128 |
| Conread position: | 59-434 |
| Cow position: | chr18:338834-339214 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 252 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 37, 12 |
| Conread position: | 63-429 |
| Cow position: | chr18:39957042-39957421 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 263 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 41, 71 |
| Conread position: | 176-314 |
| Cow position: | chr18:51209116-51208978 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 182-317 |
| Cow position: | chr18:18484992-18484854 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 39-324 |
| Cow position: | chr19:31270138-31269851 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 201 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 17, 44 |
| Conread position: | 105-430 |
| Cow position: | chr19:44983882-44983559 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 43, 143 |
| Conread position: | 2-422 |
| Cow position: | chr20:34113462-34113875 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 266 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 8, 90 |
| Conread position: | 9-355 |
| Cow position: | chr20:27388416-27388072 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 250 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 87, 14 |
| Conread position: | 105-281 |
| Cow position: | chr20:42059870-42060051 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 134 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 30, 22 |
| Conread position: | 144-360 |
| Cow position: | chr20:29563027-29563244 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 150 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 85, 61 |
| Conread position: | 1-356 |
| Cow position: | chr21:1041882-1042247 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 245 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 59, 16 |
| Conread position: | 11-232 |
| Cow position: | chr21:36394105-36394328 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 94, 15 |
| Conread position: | 104-324 |
| Cow position: | chr21:36003319-36003104 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 121, 8 |
| Conread position: | 13-437 |
| Cow position: | chr22:7505362-7504929 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 285 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 33, 19 |
| Conread position: | 34-345 |
| Cow position: | chr22:22187811-22188128 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 210 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 22, 43 |
| Conread position: | 149-318 |
| Cow position: | chr22:30690254-30690086 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 79, 25 |
| Conread position: | 149-436 |
| Cow position: | chr22:39131751-39132039 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 77, 114 |
| Conread position: | 179-318 |
| Cow position: | chr22:26829294-26829434 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 186-324 |
| Cow position: | chr22:23793782-23793644 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 41, 53 |
| Conread position: | 249-428 |
| Cow position: | chr22:28871990-28871809 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 189-437 |
| Cow position: | chr23:10664277-10664029 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 38, 110 |
| Conread position: | 41-418 |
| Cow position: | chr24:12891150-12891535 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 255 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 41, 89 |
| Conread position: | 154-326 |
| Cow position: | chr26:4162041-4162214 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 160-313 |
| Cow position: | chr26:13929278-13929125 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 64, 112 |
| Conread position: | 45-314 |
| Cow position: | chr27:25894094-25893824 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 185 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 7, 33 |
| Conread position: | 45-318 |
| Cow position: | chr28:29240171-29240447 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 7, 21 |
| Conread position: | 177-280 |
| Cow position: | chr28:16521107-16521004 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 86 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 50, 23 |
| Conread position: | 143-418 |
| Cow position: | chr29:21442881-21442602 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 22, 30 |
| Conread position: | 247-422 |
| Cow position: | chr29:23314662-23314485 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 125 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 84, 8 |
| Conread position: | 1-426 |
| Cow position: | chr5:34478579-34478987 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 226, 142 |
| Conread position: | 176-434 |
| Cow position: | chr5:4496935-4497196 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 1-404 |
| Cow position: | chr6:56354354-56354769 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 279 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 119, 99 |
| Conread position: | 4-431 |
| Cow position: | chr6:20436925-20437369 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 289 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 55, 79 |
| Conread position: | 103-336 |
| Cow position: | chr6:1565111-1565347 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 29, 19 |
| Conread position: | 104-430 |
| Cow position: | chr6:60111478-60111151 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 225 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 47, 37 |
| Conread position: | 105-313 |
| Cow position: | chr7:52268227-52268010 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 32, 51 |
| Conread position: | 106-430 |
| Cow position: | chr7:9618926-9618597 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 220 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 31, 155 |
| Conread position: | 153-393 |
| Cow position: | chr7:45349074-45348832 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 74, 65 |
| Conread position: | 178-357 |
| Cow position: | chr7:62300041-62300222 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 176-406 |
| Cow position: | chr8:18779278-18779501 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 146, 8 |
| Conread position: | 42-428 |
| Cow position: | chr9:53067753-53067378 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 252 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 80, 38 |
| Conread position: | 59-423 |
| Cow position: | chr9:35887168-35886813 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 259 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 46, 81 |
| Conread position: | 105-430 |
| Cow position: | chr9:13329155-13328828 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 32, 83 |
| Conread position: | 172-428 |
| Cow position: | chr9:19563794-19563523 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 249-429 |
| Cow position: | chr9:14866062-14865880 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 112, 78 |
| Conread position: | 64-430 |
| Cow position: | chrX:16926212-16925834 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 77, 42 |
| Conread position: | 104-419 |
| Cow position: | chrX:43837156-43837466 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 213 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 35, 92 |
| Conread position: | 105-318 |
| Cow position: | chrX:86080-86301 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 32, 157 |
| Conread position: | 105-408 |
| Cow position: | chrX:38943335-38943023 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 32, 154 |
| Conread position: | 149-318 |
| Cow position: | chrX:32583119-32582958 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 90, 103 |
| Conread position: | 173-417 |
| Cow position: | chrX:1133074-1133322 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 54, 198 |
| Conread position: | 249-428 |
| Cow position: | chrX:799763-799582 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 79, 0 |