Cow genome map
| Conread name: | Ss1.1-Utr1-UTR010019H08.5.5 |
| Conread position: | 71-245 |
| Cow position: | chr11:21613178-21613352 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 71-276 |
| Cow position: | chr11:15691789-15691590 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 164, 0 |
| Conread position: | 298-473 |
| Cow position: | chr11:21613177-21613352 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 139 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 298-504 |
| Cow position: | chr11:15691790-15691590 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 165, 0 |
| Conread position: | 526-701 |
| Cow position: | chr11:21613177-21613352 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 139 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 526-732 |
| Cow position: | chr11:15691790-15691590 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 165, 0 |
| Conread position: | 754-929 |
| Cow position: | chr11:21613177-21613352 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 138 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 754-960 |
| Cow position: | chr11:15691790-15691590 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 165, 0 |
| Conread position: | 982-1157 |
| Cow position: | chr11:21613177-21613352 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 138 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 982-1188 |
| Cow position: | chr11:15691790-15691590 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 165, 0 |
| Conread position: | 1210-1385 |
| Cow position: | chr11:21613177-21613352 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 139 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1210-1410 |
| Cow position: | chr11:15691790-15691596 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 165, 0 |
| Conread position: | 126-297 |
| Cow position: | chr12:462710-462881 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 377-525 |
| Cow position: | chr12:462733-462881 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 130 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 605-753 |
| Cow position: | chr12:462733-462881 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 130 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 833-981 |
| Cow position: | chr12:462733-462881 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 129 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1061-1209 |
| Cow position: | chr12:462733-462881 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 129 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1289-1449 |
| Cow position: | chr12:462733-462892 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 136 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 157, 0 |
| Conread position: | 71-267 |
| Cow position: | chr16:55144561-55144367 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 80, 95 |
| Conread position: | 298-495 |
| Cow position: | chr16:55144562-55144367 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 79, 104 |
| Conread position: | 526-723 |
| Cow position: | chr16:55144562-55144367 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 79, 104 |
| Conread position: | 754-951 |
| Cow position: | chr16:55144562-55144367 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 79, 104 |
| Conread position: | 982-1179 |
| Cow position: | chr16:55144562-55144367 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 79, 104 |
| Conread position: | 1210-1407 |
| Cow position: | chr16:55144562-55144367 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 79, 104 |
| Conread position: | 56-297 |
| Cow position: | chr17:27755517-27755758 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 61-1434 |
| Cow position: | chr17:26093198-26091825 (view UCSC Genome Browser custom track) |
| Alignm length: | 1374 |
| Alignm identity: | 1298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 71-1437 |
| Cow position: | chr17:26092048-26090682 (view UCSC Genome Browser custom track) |
| Alignm length: | 1367 |
| Alignm identity: | 1288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 71-1437 |
| Cow position: | chr17:26092276-26090910 (view UCSC Genome Browser custom track) |
| Alignm length: | 1367 |
| Alignm identity: | 1290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 71-1437 |
| Cow position: | chr17:26092504-26091138 (view UCSC Genome Browser custom track) |
| Alignm length: | 1367 |
| Alignm identity: | 1291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 71-1437 |
| Cow position: | chr17:26092732-26091366 (view UCSC Genome Browser custom track) |
| Alignm length: | 1367 |
| Alignm identity: | 1289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 71-1437 |
| Cow position: | chr17:26092960-26091594 (view UCSC Genome Browser custom track) |
| Alignm length: | 1367 |
| Alignm identity: | 1290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 71-1512 |
| Cow position: | chr17:26091820-26090378 (view UCSC Genome Browser custom track) |
| Alignm length: | 1443 |
| Alignm identity: | 1364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 1369, 0 |
| Conread position: | 158-297 |
| Cow position: | chr17:17083173-17083311 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 287-525 |
| Cow position: | chr17:27755519-27755758 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 299-1437 |
| Cow position: | chr17:26093188-26092050 (view UCSC Genome Browser custom track) |
| Alignm length: | 1139 |
| Alignm identity: | 1074 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 399-525 |
| Cow position: | chr17:17083185-17083311 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 109 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 515-753 |
| Cow position: | chr17:27755519-27755758 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 627-753 |
| Cow position: | chr17:17083185-17083311 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 109 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 743-981 |
| Cow position: | chr17:27755519-27755758 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 855-981 |
| Cow position: | chr17:17083185-17083311 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 109 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 971-1209 |
| Cow position: | chr17:27755519-27755758 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 1083-1209 |
| Cow position: | chr17:17083185-17083311 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 109 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1199-1449 |
| Cow position: | chr17:27755519-27755769 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 248 |
| Conread position: | 1311-1449 |
| Cow position: | chr17:17083185-17083322 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 116 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 135, 0 |
| Conread position: | 71-300 |
| Cow position: | chr18:4477918-4477693 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 276-528 |
| Cow position: | chr18:4477941-4477693 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 504-756 |
| Cow position: | chr18:4477941-4477693 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 732-984 |
| Cow position: | chr18:4477941-4477693 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 960-1212 |
| Cow position: | chr18:4477941-4477693 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1188-1509 |
| Cow position: | chr18:4477941-4477623 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 251, 52 |
| Conread position: | 70-981 |
| Cow position: | chr19:23764692-23763781 (view UCSC Genome Browser custom track) |
| Alignm length: | 912 |
| Alignm identity: | 814 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 299-1209 |
| Cow position: | chr19:23764691-23763781 (view UCSC Genome Browser custom track) |
| Alignm length: | 911 |
| Alignm identity: | 820 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 527-1449 |
| Cow position: | chr19:23764691-23763770 (view UCSC Genome Browser custom track) |
| Alignm length: | 923 |
| Alignm identity: | 825 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 919, 0 |
| Conread position: | 71-297 |
| Cow position: | chr24:27055483-27055710 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 170 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 161, 0 |
| Conread position: | 289-525 |
| Cow position: | chr24:27055472-27055710 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 178 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 517-753 |
| Cow position: | chr24:27055472-27055710 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 178 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 745-981 |
| Cow position: | chr24:27055472-27055710 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 178 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 973-1209 |
| Cow position: | chr24:27055472-27055710 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 178 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 1201-1422 |
| Cow position: | chr24:27055472-27055695 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 172 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 298-504 |
| Cow position: | chr26:15317977-15317776 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 526-732 |
| Cow position: | chr26:15317977-15317776 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 754-960 |
| Cow position: | chr26:15317977-15317776 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 982-1188 |
| Cow position: | chr26:15317977-15317776 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 1210-1414 |
| Cow position: | chr26:15317977-15317778 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 71-279 |
| Cow position: | chr3:16890607-16890815 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 298-507 |
| Cow position: | chr3:16890606-16890815 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 164 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 526-735 |
| Cow position: | chr3:16890606-16890815 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 164 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 754-963 |
| Cow position: | chr3:16890606-16890815 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 163 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 982-1191 |
| Cow position: | chr3:16890606-16890815 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 163 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1210-1413 |
| Cow position: | chr3:16890606-16890809 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 160 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1347-1480 |
| Cow position: | chr3:1803285-1803421 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 71-174 |
| Cow position: | chr7:2025316-2025419 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 90 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 298-402 |
| Cow position: | chr7:2025315-2025419 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 90 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 526-630 |
| Cow position: | chr7:2025315-2025419 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 90 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 754-858 |
| Cow position: | chr7:2025315-2025419 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 91 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 982-1086 |
| Cow position: | chr7:2025315-2025419 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 91 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1210-1314 |
| Cow position: | chr7:2025315-2025419 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 92 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 71-296 |
| Cow position: | chr8:57981996-57982221 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 171 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 298-524 |
| Cow position: | chr8:57981995-57982221 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 526-752 |
| Cow position: | chr8:57981995-57982221 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 754-980 |
| Cow position: | chr8:57981995-57982221 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 982-1208 |
| Cow position: | chr8:57981995-57982221 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1210-1413 |
| Cow position: | chr8:57981995-57982198 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 165 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |