Cow genome map
| Conread name: | Ss1.1-Utr1-UTR010020C11.5 |
| Conread position: | 486-660 |
| Cow position: | chr10:37379757-37379927 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 19, 28 |
| Conread position: | 487-658 |
| Cow position: | chr10:11083837-11083673 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 137, 28 |
| Conread position: | 488-642 |
| Cow position: | chr10:5379077-5378927 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 135, 29 |
| Conread position: | 490-647 |
| Cow position: | chr10:69262933-69262781 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 91, 27 |
| Conread position: | 490-653 |
| Cow position: | chr10:41069371-41069528 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 134, 27 |
| Conread position: | 490-661 |
| Cow position: | chr10:40877174-40877340 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 134, 27 |
| Conread position: | 490-656 |
| Cow position: | chr11:28220735-28220897 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 134, 24 |
| Conread position: | 490-660 |
| Cow position: | chr11:20035898-20036060 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 134, 27 |
| Conread position: | 493-660 |
| Cow position: | chr11:37969086-37968926 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 135, 18 |
| Conread position: | 494-660 |
| Cow position: | chr11:55933782-55933617 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 130, 60 |
| Conread position: | 498-662 |
| Cow position: | chr11:48682679-48682841 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 126, 27 |
| Conread position: | 517-662 |
| Cow position: | chr11:76697224-76697366 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 110 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 107, 26 |
| Conread position: | 517-660 |
| Cow position: | chr12:9591872-9591729 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 107, 41 |
| Conread position: | 517-660 |
| Cow position: | chr12:28867598-28867742 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 74, 32 |
| Conread position: | 519-652 |
| Cow position: | chr12:26549176-26549045 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 103, 20 |
| Conread position: | 483-653 |
| Cow position: | chr13:17564835-17564666 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 35, 46 |
| Conread position: | 490-638 |
| Cow position: | chr13:17776057-17776199 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 133, 24 |
| Conread position: | 490-697 |
| Cow position: | chr13:58810121-58810327 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 134, 64 |
| Conread position: | 494-661 |
| Cow position: | chr13:15720451-15720619 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 63, 34 |
| Conread position: | 525-681 |
| Cow position: | chr13:19296745-19296901 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 99, 18 |
| Conread position: | 483-660 |
| Cow position: | chr14:37708212-37708039 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 94, 32 |
| Conread position: | 482-644 |
| Cow position: | chr15:41451840-41452007 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 5, 73 |
| Conread position: | 484-662 |
| Cow position: | chr15:12776676-12776856 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 5, 73 |
| Conread position: | 487-662 |
| Cow position: | chr15:43843021-43842847 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 29, 53 |
| Conread position: | 490-655 |
| Cow position: | chr15:15397507-15397663 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 490-662 |
| Cow position: | chr15:10496598-10496429 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 134, 25 |
| Conread position: | 484-662 |
| Cow position: | chr16:19051495-19051321 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 140, 41 |
| Conread position: | 489-647 |
| Cow position: | chr16:13264034-13264186 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 135, 26 |
| Conread position: | 494-653 |
| Cow position: | chr16:17415748-17415906 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 130, 59 |
| Conread position: | 495-648 |
| Cow position: | chr17:33061780-33061630 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 129, 48 |
| Conread position: | 490-659 |
| Cow position: | chr18:35748812-35748649 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 138, 24 |
| Conread position: | 494-647 |
| Cow position: | chr18:16676748-16676597 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 28, 24 |
| Conread position: | 487-637 |
| Cow position: | chr19:11204283-11204132 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 35, 70 |
| Conread position: | 490-656 |
| Cow position: | chr19:15875835-15875996 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 134, 25 |
| Conread position: | 488-657 |
| Cow position: | chr2:72282864-72283029 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 136, 24 |
| Conread position: | 494-662 |
| Cow position: | chr21:38680697-38680863 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 130, 23 |
| Conread position: | 497-662 |
| Cow position: | chr21:7575273-7575114 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 126, 20 |
| Conread position: | 489-648 |
| Cow position: | chr22:17601759-17601913 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 494-662 |
| Cow position: | chr22:7307677-7307516 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 132 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 130, 21 |
| Conread position: | 497-662 |
| Cow position: | chr22:10780643-10780481 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 127, 23 |
| Conread position: | 483-677 |
| Cow position: | chr23:33205044-33205231 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 141, 33 |
| Conread position: | 489-662 |
| Cow position: | chr23:7005426-7005592 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 135, 29 |
| Conread position: | 12-521 |
| Cow position: | chr24:7389224-7389727 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 49 |
| Conread position: | 486-634 |
| Cow position: | chr24:23219570-23219711 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 490-660 |
| Cow position: | chr24:32679054-32679218 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 55, 25 |
| Conread position: | 493-662 |
| Cow position: | chr24:20204991-20204824 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 131, 21 |
| Conread position: | 484-662 |
| Cow position: | chr25:8527175-8527347 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 139, 31 |
| Conread position: | 490-634 |
| Cow position: | chr25:11992193-11992056 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 111 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 134, 27 |
| Conread position: | 490-659 |
| Cow position: | chr25:2412490-2412325 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 134, 27 |
| Conread position: | 495-724 |
| Cow position: | chr25:35165424-35165647 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 140, 23 |
| Conread position: | 516-661 |
| Cow position: | chr25:16944307-16944162 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 11, 43 |
| Conread position: | 500-665 |
| Cow position: | chr26:27569051-27569213 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 126 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 124, 18 |
| Conread position: | 490-638 |
| Cow position: | chr27:26594535-26594681 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 134, 27 |
| Conread position: | 498-662 |
| Cow position: | chr27:4363061-4362898 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 26, 47 |
| Conread position: | 494-662 |
| Cow position: | chr28:23603050-23602885 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 130, 36 |
| Conread position: | 516-653 |
| Cow position: | chr29:3776871-3776736 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 108, 33 |
| Conread position: | 482-688 |
| Cow position: | chr3:58167100-58166905 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 142, 33 |
| Conread position: | 487-647 |
| Cow position: | chr3:10972319-10972480 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 30, 71 |
| Conread position: | 494-634 |
| Cow position: | chr3:79051307-79051443 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 109 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 130, 19 |
| Conread position: | 494-724 |
| Cow position: | chr3:39223632-39223413 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 91, 23 |
| Conread position: | 481-662 |
| Cow position: | chr4:14219560-14219734 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 143, 33 |
| Conread position: | 489-652 |
| Cow position: | chr4:24496694-24496857 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 25, 66 |
| Conread position: | 489-662 |
| Cow position: | chr4:10434273-10434449 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 32, 67 |
| Conread position: | 520-644 |
| Cow position: | chr4:30571885-30572009 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 99 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 7, 35 |
| Conread position: | 476-637 |
| Cow position: | chr5:48097552-48097394 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 135, 44 |
| Conread position: | 487-643 |
| Cow position: | chr6:45743042-45742894 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 510-662 |
| Cow position: | chr6:24265890-24265741 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 114, 9 |
| Conread position: | 487-662 |
| Cow position: | chr7:21922425-21922250 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 131 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 36, 28 |
| Conread position: | 494-653 |
| Cow position: | chr7:5516419-5516266 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 130, 25 |
| Conread position: | 486-661 |
| Cow position: | chr8:11934774-11934601 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 71, 29 |
| Conread position: | 490-662 |
| Cow position: | chr8:25246177-25246342 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 125, 24 |
| Conread position: | 492-651 |
| Cow position: | chr8:29639950-29639793 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 132, 51 |
| Conread position: | 500-653 |
| Cow position: | chr8:51510344-51510192 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 114 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 12, 55 |
| Conread position: | 508-661 |
| Cow position: | chr8:5933392-5933234 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 53, 12 |
| Conread position: | 520-662 |
| Cow position: | chr8:61208308-61208168 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 104, 25 |
| Conread position: | 520-724 |
| Cow position: | chr8:51950143-51949945 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 180, 36 |
| Conread position: | 493-652 |
| Cow position: | chr9:44481048-44480891 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 30, 51 |
| Conread position: | 517-656 |
| Cow position: | chr9:42795155-42795017 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 106 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 107, 37 |
| Conread position: | 446-660 |
| Cow position: | chrX:20370773-20370562 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 13, 73 |
| Conread position: | 489-661 |
| Cow position: | chrX:25361528-25361355 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 35, 67 |
| Conread position: | 490-647 |
| Cow position: | chrX:10990126-10989971 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 134, 27 |