Cow genome map
| Conread name: | Ss1.1-Utr1-UTR010024H07.5 |
| Conread position: | 257-417 |
| Cow position: | chr22:31817812-31817972 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 416-609 |
| Cow position: | chr22:31819019-31819212 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 133 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 33, 22 |
| Conread position: | 604-845 |
| Cow position: | chr22:31821426-31821667 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1236-1487 |
| Cow position: | chr22:31807001-31807252 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1323-1499 |
| Cow position: | chr22:31830369-31830545 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 145 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1659-1864 |
| Cow position: | chr22:31831735-31831940 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1850-2017 |
| Cow position: | chr22:31832824-31832991 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2139-2411 |
| Cow position: | chr22:31835873-31836145 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 57 |
| Conread position: | 2404-2546 |
| Cow position: | chr22:31836741-31836883 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2542-2661 |
| Cow position: | chr22:31838234-31838353 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2655-2799 |
| Cow position: | chr22:31841582-31841727 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 2792-2971 |
| Cow position: | chr22:31844467-31844646 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 137 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2968-3194 |
| Cow position: | chr22:31848898-31849124 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3391-3577 |
| Cow position: | chr22:31851301-31851487 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 161-613 |
| Cow position: | chr4:50494399-50493953 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 275 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 56, 42 |
| Conread position: | 257-413 |
| Cow position: | chr4:50490761-50490605 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 129 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 416-609 |
| Cow position: | chr4:50490527-50490334 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 159 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 604-851 |
| Cow position: | chr4:50490100-50489853 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1053-1195 |
| Cow position: | chr4:50488635-50488493 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1190-1324 |
| Cow position: | chr4:50488238-50488104 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1323-1500 |
| Cow position: | chr4:50488021-50487844 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1496-1660 |
| Cow position: | chr4:50487286-50487122 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 104, 110 |
| Conread position: | 1659-1864 |
| Cow position: | chr4:50487016-50486811 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1862-2017 |
| Cow position: | chr4:50486364-50486209 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2151-2411 |
| Cow position: | chr4:50485457-50485197 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2403-2547 |
| Cow position: | chr4:50485107-50484963 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2438-2599 |
| Cow position: | chr4:50488025-50487864 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2511-2664 |
| Cow position: | chr4:50484737-50484582 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 2792-2971 |
| Cow position: | chr4:50483690-50483511 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2982-3198 |
| Cow position: | chr4:50483357-50483141 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3189-3396 |
| Cow position: | chr4:50482503-50482290 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 21, 13 |
| Conread position: | 3391-3581 |
| Cow position: | chr4:50482181-50481991 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-136 |
| Cow position: | chrX:14351679-14351546 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 126 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 134-259 |
| Cow position: | chrX:14351170-14351045 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 250-417 |
| Cow position: | chrX:14350964-14350796 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 152 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 416-609 |
| Cow position: | chrX:14350192-14349999 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 604-855 |
| Cow position: | chrX:14347609-14347358 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 854-951 |
| Cow position: | chrX:14347252-14347155 (view UCSC Genome Browser custom track) |
| Alignm length: | 98 |
| Alignm identity: | 84 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 950-1080 |
| Cow position: | chrX:14346973-14346844 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 1053-1195 |
| Cow position: | chrX:14346782-14346640 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 133 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1192-1324 |
| Cow position: | chrX:14346537-14346405 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1284-1501 |
| Cow position: | chrX:14342402-14342185 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 176, 105 |
| Conread position: | 1323-1499 |
| Cow position: | chrX:14346225-14346049 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 162 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1495-1660 |
| Cow position: | chrX:14345958-14345793 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 153 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1699-1873 |
| Cow position: | chrX:14345695-14345523 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 162 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 0 |
| Conread position: | 1861-2017 |
| Cow position: | chrX:14345457-14345301 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 147 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2016-2137 |
| Cow position: | chrX:14345186-14345065 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 108 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2139-2406 |
| Cow position: | chrX:14344943-14344676 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2404-2552 |
| Cow position: | chrX:14344547-14344400 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 139 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 0 |
| Conread position: | 2541-2661 |
| Cow position: | chrX:14344244-14344124 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2658-2798 |
| Cow position: | chrX:14343601-14343461 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 135 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2792-2974 |
| Cow position: | chrX:14342751-14342569 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2968-3191 |
| Cow position: | chrX:14342410-14342187 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3391-3903 |
| Cow position: | chrX:14341694-14341205 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 325, 266 |