Cow genome map
| Conread name: | Ss1.1-Utr1-UTR010025C01.5 |
| Conread position: | 393-775 |
| Cow position: | chr1:69374742-69374378 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 465-775 |
| Cow position: | chr1:30516494-30516804 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 481-769 |
| Cow position: | chr1:6621082-6621373 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 168 |
| Conread position: | 393-775 |
| Cow position: | chr10:15825821-15825439 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 393-775 |
| Cow position: | chr10:45269931-45270310 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 0 |
| Conread position: | 394-778 |
| Cow position: | chr10:69640061-69639680 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 250, 0 |
| Conread position: | 393-775 |
| Cow position: | chr11:7724243-7724625 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 396-774 |
| Cow position: | chr11:43057929-43058307 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 408-775 |
| Cow position: | chr11:68582200-68581833 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 481-769 |
| Cow position: | chr11:82946827-82947118 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 168 |
| Conread position: | 660-775 |
| Cow position: | chr11:16255176-16255291 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 106 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 393-775 |
| Cow position: | chr12:1662196-1662578 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 393-775 |
| Cow position: | chr12:30861722-30861340 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 393-777 |
| Cow position: | chr12:1673621-1674005 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 417-774 |
| Cow position: | chr12:1636192-1635807 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 268 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 24, 81 |
| Conread position: | 393-680 |
| Cow position: | chr13:27850666-27850378 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 393-775 |
| Cow position: | chr13:7598936-7599312 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 393-775 |
| Cow position: | chr13:52263849-52263467 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 671-775 |
| Cow position: | chr13:42559945-42560049 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 96 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 390-775 |
| Cow position: | chr15:11070398-11070013 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 393-775 |
| Cow position: | chr15:35507082-35506714 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 232, 0 |
| Conread position: | 408-775 |
| Cow position: | chr15:14106155-14106522 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 540-771 |
| Cow position: | chr15:46718116-46717885 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 393-775 |
| Cow position: | chr16:49012025-49011643 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 393-775 |
| Cow position: | chr16:49773480-49773862 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 393-775 |
| Cow position: | chr16:52573338-52573719 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 393-775 |
| Cow position: | chr17:36084422-36084040 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 393-775 |
| Cow position: | chr18:46143378-46143757 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 393-775 |
| Cow position: | chr19:6987697-6987319 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 0 |
| Conread position: | 393-775 |
| Cow position: | chr19:29154125-29154507 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 393-775 |
| Cow position: | chr19:41835181-41834802 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 0 |
| Conread position: | 393-775 |
| Cow position: | chr2:58003332-58002953 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 196, 0 |
| Conread position: | 564-775 |
| Cow position: | chr2:9225249-9225460 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 393-775 |
| Cow position: | chr20:28491521-28491902 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 571-775 |
| Cow position: | chr20:37397972-37397768 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 394-775 |
| Cow position: | chr22:41852829-41852448 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 600-775 |
| Cow position: | chr22:41962300-41962479 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 155 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 95-783 |
| Cow position: | chr23:24170244-24170932 (view UCSC Genome Browser custom track) |
| Alignm length: | 689 |
| Alignm identity: | 598 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 393-771 |
| Cow position: | chr23:25804041-25804419 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 393-775 |
| Cow position: | chr23:24185732-24186114 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 393-783 |
| Cow position: | chr23:24223257-24223647 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 413-778 |
| Cow position: | chr23:26337817-26338182 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 426-777 |
| Cow position: | chr23:26341282-26340931 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 582-775 |
| Cow position: | chr23:35659464-35659657 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 606-775 |
| Cow position: | chr23:5740794-5740625 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 152 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 783-1178 |
| Cow position: | chr23:24177424-24177815 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 240 |
| Conread position: | 430-775 |
| Cow position: | chr24:40172648-40172993 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 679-775 |
| Cow position: | chr26:29165765-29165861 (view UCSC Genome Browser custom track) |
| Alignm length: | 97 |
| Alignm identity: | 86 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 416-775 |
| Cow position: | chr27:26613730-26614089 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 545-775 |
| Cow position: | chr27:27865540-27865770 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 631-775 |
| Cow position: | chr28:27049905-27050049 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 129 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 393-775 |
| Cow position: | chr29:1838846-1839228 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 387-769 |
| Cow position: | chr3:17614436-17614818 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 387-769 |
| Cow position: | chr3:17624760-17624378 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 388-769 |
| Cow position: | chr3:17591900-17592281 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 390-769 |
| Cow position: | chr3:62459271-62458892 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 393-769 |
| Cow position: | chr3:62431042-62430666 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 393-769 |
| Cow position: | chr3:62448578-62448954 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 393-774 |
| Cow position: | chr3:62478430-62478049 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 393-780 |
| Cow position: | chr3:1077455-1077842 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 381, 198 |
| Conread position: | 393-785 |
| Cow position: | chr3:17645420-17645813 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 388, 0 |
| Conread position: | 641-775 |
| Cow position: | chr3:56588624-56588756 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 393-775 |
| Cow position: | chr4:15925997-15925615 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 534-769 |
| Cow position: | chr4:64390607-64390842 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 618-775 |
| Cow position: | chr4:35724460-35724303 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 140 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 393-775 |
| Cow position: | chr5:13917375-13916993 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 399-775 |
| Cow position: | chr5:31548158-31548534 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 666-775 |
| Cow position: | chr5:8026503-8026394 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 694-775 |
| Cow position: | chr5:45989719-45989638 (view UCSC Genome Browser custom track) |
| Alignm length: | 82 |
| Alignm identity: | 75 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 393-774 |
| Cow position: | chr6:39755834-39755453 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 393-775 |
| Cow position: | chr6:7483636-7484017 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 393-775 |
| Cow position: | chr6:56962170-56962553 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 242, 0 |
| Conread position: | 393-783 |
| Cow position: | chr6:39764559-39764169 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 421-775 |
| Cow position: | chr6:20715440-20715794 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 546-695 |
| Cow position: | chr6:37164862-37165011 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 133 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 393-771 |
| Cow position: | chr7:2957920-2958298 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 393-775 |
| Cow position: | chr7:13894776-13894394 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 534-775 |
| Cow position: | chr8:11335272-11335031 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 600-775 |
| Cow position: | chr8:36912090-36911915 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 152 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 438-775 |
| Cow position: | chr9:36521591-36521254 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 530-775 |
| Cow position: | chr9:35746073-35746318 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 393-775 |
| Cow position: | chrX:6377841-6378223 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 426-776 |
| Cow position: | chrX:15369276-15369619 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 225 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 37, 46 |
| Conread position: | 499-775 |
| Cow position: | chrX:22916340-22916064 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 521-739 |
| Cow position: | chrX:16572722-16572504 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 0, 0 |