Cow genome map
| Conread name: | Ss1.1-Utr1-UTR010032H09.5.5 |
| Conread position: | 293-445 |
| Cow position: | chr19:33898622-33898775 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 147, 0 |
| Conread position: | 293-447 |
| Cow position: | chr19:33911294-33911448 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 293-447 |
| Cow position: | chr19:33927624-33927778 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 120 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 573-734 |
| Cow position: | chr19:33831061-33831223 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 577-734 |
| Cow position: | chr19:33900197-33900354 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 581-734 |
| Cow position: | chr19:33975619-33975772 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 587-734 |
| Cow position: | chr19:33772640-33772787 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 130 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 587-737 |
| Cow position: | chr19:33928782-33928932 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 594-734 |
| Cow position: | chr19:33816430-33816570 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 127 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 746-887 |
| Cow position: | chr19:33773653-33773795 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 1014-1279 |
| Cow position: | chr19:33589462-33589728 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 225, 7 |
| Conread position: | 1021-1213 |
| Cow position: | chr19:33933282-33933474 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1021-1230 |
| Cow position: | chr19:33835696-33835905 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1021-1230 |
| Cow position: | chr19:33976994-33977203 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1021-1236 |
| Cow position: | chr19:33902662-33902877 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1021-1246 |
| Cow position: | chr19:33604849-33605074 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1029-1235 |
| Cow position: | chr19:33774140-33774346 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 146 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1029-1235 |
| Cow position: | chr19:33817345-33817551 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 20-503 |
| Cow position: | chr23:431844-432311 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 143-493 |
| Cow position: | chr23:318172-318531 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 156 |
| Conread position: | 235-493 |
| Cow position: | chr23:327463-327727 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 56 |
| Conread position: | 236-493 |
| Cow position: | chr23:371127-371384 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 49 |
| Conread position: | 236-493 |
| Cow position: | chr23:441249-441509 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 0 |
| Conread position: | 236-493 |
| Cow position: | chr23:454464-454724 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 41 |
| Conread position: | 260-493 |
| Cow position: | chr23:384701-384940 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 263-505 |
| Cow position: | chr23:472578-472823 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 175 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 22, 171 |
| Conread position: | 267-493 |
| Cow position: | chr23:581558-581787 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 160 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 9, 174 |
| Conread position: | 293-493 |
| Cow position: | chr23:484704-484905 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 5, 146 |
| Conread position: | 296-493 |
| Cow position: | chr23:339739-339936 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 166 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 305-493 |
| Cow position: | chr23:547950-548138 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 140, 133 |
| Conread position: | 305-493 |
| Cow position: | chr23:597766-597954 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 128, 144 |
| Conread position: | 305-493 |
| Cow position: | chr23:621097-621285 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 128, 144 |
| Conread position: | 492-578 |
| Cow position: | chr23:433975-434061 (view UCSC Genome Browser custom track) |
| Alignm length: | 87 |
| Alignm identity: | 86 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 565-771 |
| Cow position: | chr23:442460-442669 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 0 |
| Conread position: | 572-734 |
| Cow position: | chr23:485982-486144 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 573-734 |
| Cow position: | chr23:321056-321217 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 143 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 573-734 |
| Cow position: | chr23:373206-373367 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 143 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 573-737 |
| Cow position: | chr23:340592-340756 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 147 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 574-734 |
| Cow position: | chr23:329461-329621 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 143 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 574-734 |
| Cow position: | chr23:474034-474194 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 574-734 |
| Cow position: | chr23:493753-493913 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 574-734 |
| Cow position: | chr23:548748-548908 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 574-734 |
| Cow position: | chr23:582486-582646 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 574-734 |
| Cow position: | chr23:623411-623571 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 577-734 |
| Cow position: | chr23:434283-434440 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 144 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 577-734 |
| Cow position: | chr23:535861-536018 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 116 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 577-737 |
| Cow position: | chr23:601053-601213 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 580-734 |
| Cow position: | chr23:517992-518146 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 581-734 |
| Cow position: | chr23:456236-456390 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 138 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 732-886 |
| Cow position: | chr23:330425-330579 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 117 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 77, 82 |
| Conread position: | 732-892 |
| Cow position: | chr23:322355-322515 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 77, 82 |
| Conread position: | 732-892 |
| Cow position: | chr23:373515-373675 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 732-893 |
| Cow position: | chr23:434743-434904 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 151 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 732-893 |
| Cow position: | chr23:474739-474900 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 755-892 |
| Cow position: | chr23:456599-456736 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 101 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 892-1021 |
| Cow position: | chr23:323092-323221 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 892-1021 |
| Cow position: | chr23:456825-456954 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 102 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 895-1021 |
| Cow position: | chr23:373761-373887 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 895-1021 |
| Cow position: | chr23:443358-443484 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 895-1021 |
| Cow position: | chr23:475002-475128 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 100 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 36, 27 |
| Conread position: | 895-1029 |
| Cow position: | chr23:331207-331343 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 107 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 895-1032 |
| Cow position: | chr23:435017-435154 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 131 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 982-1392 |
| Cow position: | chr23:435235-435651 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 299, 409 |
| Conread position: | 1021-1230 |
| Cow position: | chr23:388448-388657 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1021-1240 |
| Cow position: | chr23:323468-323687 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1021-1240 |
| Cow position: | chr23:331428-331647 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 164 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1021-1240 |
| Cow position: | chr23:341546-341765 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1021-1240 |
| Cow position: | chr23:373985-374204 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 164 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1021-1241 |
| Cow position: | chr23:443655-443875 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1021-1242 |
| Cow position: | chr23:487403-487624 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1021-1242 |
| Cow position: | chr23:562285-562506 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1021-1242 |
| Cow position: | chr23:584690-584911 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1021-1242 |
| Cow position: | chr23:602628-602849 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1021-1242 |
| Cow position: | chr23:625268-625489 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1021-1245 |
| Cow position: | chr23:457048-457272 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1021-1246 |
| Cow position: | chr23:497165-497390 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1029-1242 |
| Cow position: | chr23:475303-475516 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1049-1246 |
| Cow position: | chr23:537408-537605 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 310-488 |
| Cow position: | chr5:20418264-20418439 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 79, 86 |
| Conread position: | 581-782 |
| Cow position: | chr5:20419590-20419793 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 89, 85 |
| Conread position: | 458-736 |
| Cow position: | chr7:267381-267663 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 93, 185 |