Cow genome map
| Conread name: | Ss1.1-Utr1-UTR010043D01.5.5 |
| Conread position: | 207-983 |
| Cow position: | chr1:89000436-88999623 (view UCSC Genome Browser custom track) |
| Alignm length: | 817 |
| Alignm identity: | 638 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 291 |
| Conread position: | 1155-1315 |
| Cow position: | chr1:85963485-85963643 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 104, 27 |
| Conread position: | 1162-1346 |
| Cow position: | chr10:6665229-6665408 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 158 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 64 |
| Conread position: | 48-545 |
| Cow position: | chr11:77267093-77266590 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 144 |
| Conread position: | 155-237 |
| Cow position: | chr11:78272128-78272210 (view UCSC Genome Browser custom track) |
| Alignm length: | 83 |
| Alignm identity: | 75 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 285-545 |
| Cow position: | chr11:78274117-78274385 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 559-1179 |
| Cow position: | chr11:77266556-77265927 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 497 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 62 |
| Conread position: | 559-1179 |
| Cow position: | chr11:78274419-78275044 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 504 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 65 |
| Conread position: | 1162-1351 |
| Cow position: | chr11:77265729-77265542 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 166 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 64 |
| Conread position: | 1162-1402 |
| Cow position: | chr11:78275242-78275476 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 159 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 129, 64 |
| Conread position: | 1487-1716 |
| Cow position: | chr11:78275508-78275737 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1012-1187 |
| Cow position: | chr14:30723562-30723733 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 39, 73 |
| Conread position: | 824-1179 |
| Cow position: | chr15:23713674-23713320 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 168 |
| Conread position: | 1155-1348 |
| Cow position: | chr15:31004698-31004886 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 163 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 75 |
| Conread position: | 1158-1345 |
| Cow position: | chr18:12592448-12592268 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 162 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 68 |
| Conread position: | 1162-1349 |
| Cow position: | chr18:46529681-46529497 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 162 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 64 |
| Conread position: | 720-1173 |
| Cow position: | chr2:65331772-65332208 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 7 |
| Conread position: | 892-1183 |
| Cow position: | chr21:35594909-35594626 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 138 |
| Conread position: | 1155-1309 |
| Cow position: | chr22:21195854-21196007 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 138, 71 |
| Conread position: | 1155-1351 |
| Cow position: | chr22:40122201-40122011 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 71 |
| Conread position: | 1162-1350 |
| Cow position: | chr22:37976794-37976977 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 162 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 64 |
| Conread position: | 1155-1350 |
| Cow position: | chr23:40267800-40267611 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 7, 38 |
| Conread position: | 679-1185 |
| Cow position: | chr26:14567761-14567247 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 232 |
| Conread position: | 588-1179 |
| Cow position: | chr28:12369077-12368490 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 466 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 35 |
| Conread position: | 966-1179 |
| Cow position: | chr3:13572584-13572377 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 87, 25 |
| Conread position: | 1153-1349 |
| Cow position: | chr5:24463795-24463988 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 169 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 73 |
| Conread position: | 1090-1312 |
| Cow position: | chr7:14193236-14193458 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 66 |
| Conread position: | 1155-1350 |
| Cow position: | chr7:39077319-39077124 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 169 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 71 |
| Conread position: | 1162-1351 |
| Cow position: | chr8:49363010-49362825 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 164 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 64 |
| Conread position: | 865-1179 |
| Cow position: | chr9:64279733-64280055 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 233 |
| Conread position: | 1162-1350 |
| Cow position: | chrX:29754184-29754369 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 162 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 64 |