Cow genome map
| Conread name: | Ss1.1-Utr1-UTR010061H09.5 |
| Conread position: | 122-1229 |
| Cow position: | chr1:93219644-93218527 (view UCSC Genome Browser custom track) |
| Alignm length: | 1125 |
| Alignm identity: | 889 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 232 |
| Conread position: | 306-1227 |
| Cow position: | chr1:63254709-63255624 (view UCSC Genome Browser custom track) |
| Alignm length: | 924 |
| Alignm identity: | 557 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 444, 438 |
| Conread position: | 105-225 |
| Cow position: | chr10:19088060-19087940 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 101 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 223-550 |
| Cow position: | chr10:19086812-19086485 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 546-715 |
| Cow position: | chr10:19085776-19085607 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 144 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 697-904 |
| Cow position: | chr10:19085497-19085290 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 898-1085 |
| Cow position: | chr10:19084515-19084328 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 150 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1084-1233 |
| Cow position: | chr10:19083781-19083632 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 133 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 352-464 |
| Cow position: | chr11:9335607-9335719 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 462-565 |
| Cow position: | chr11:9335971-9336076 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 548-711 |
| Cow position: | chr11:9337776-9337939 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 153 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 710-904 |
| Cow position: | chr11:9338701-9338895 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 898-1098 |
| Cow position: | chr11:9340532-9340732 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1084-1293 |
| Cow position: | chr11:9343069-9343278 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 115-1227 |
| Cow position: | chr16:36112546-36111440 (view UCSC Genome Browser custom track) |
| Alignm length: | 1116 |
| Alignm identity: | 681 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 604, 578 |
| Conread position: | 462-928 |
| Cow position: | chr19:45155242-45154777 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 446, 0 |
| Conread position: | 739-1169 |
| Cow position: | chr19:26728369-26727945 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 290 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 22, 42 |
| Conread position: | 903-1085 |
| Cow position: | chr19:45154694-45154512 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 150 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1084-1242 |
| Cow position: | chr19:45154425-45154263 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 140 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 146, 0 |
| Conread position: | 321-893 |
| Cow position: | chr22:38195947-38195390 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 350 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 73, 69 |
| Conread position: | 122-380 |
| Cow position: | chr24:27075939-27076197 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 11, 7 |
| Conread position: | 209-468 |
| Cow position: | chr25:37061273-37061534 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 462-904 |
| Cow position: | chr25:37061968-37062410 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 105-225 |
| Cow position: | chr26:5421795-5421675 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 223-359 |
| Cow position: | chr26:5420326-5420189 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 134, 0 |
| Conread position: | 352-464 |
| Cow position: | chr26:5417264-5417152 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 528-656 |
| Cow position: | chr26:14057000-14057128 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 547-715 |
| Cow position: | chr26:5414389-5414221 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 146 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 708-911 |
| Cow position: | chr26:5412437-5412234 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 903-1085 |
| Cow position: | chr26:5410967-5410785 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 154 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1084-1228 |
| Cow position: | chr26:5408175-5408031 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 121 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 96-225 |
| Cow position: | chr28:456075-456207 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 222-550 |
| Cow position: | chr28:456309-456637 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 547-714 |
| Cow position: | chr28:456737-456904 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 146 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 706-904 |
| Cow position: | chr28:456997-457195 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 903-1085 |
| Cow position: | chr28:457289-457471 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 156 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1084-1230 |
| Cow position: | chr28:457556-457702 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 96-1227 |
| Cow position: | chr3:54413006-54414137 (view UCSC Genome Browser custom track) |
| Alignm length: | 1132 |
| Alignm identity: | 898 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 314-896 |
| Cow position: | chr7:14383642-14383069 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 359 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 7, 88 |