Cow genome map
| Conread name: | Ss1.1-Utr1-UTR01A100094.5 |
| Conread position: | 15-502 |
| Cow position: | chr1:11838323-11838797 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 16 |
| Conread position: | 502-796 |
| Cow position: | chr1:84471599-84471896 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 47, 136 |
| Conread position: | 502-796 |
| Cow position: | chr1:97974494-97974798 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 201 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 7, 32 |
| Conread position: | 508-786 |
| Cow position: | chr1:5463520-5463795 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 41, 144 |
| Conread position: | 526-689 |
| Cow position: | chr1:86844657-86844819 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 125 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 23, 128 |
| Conread position: | 538-668 |
| Cow position: | chr1:11839200-11839327 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 12, 79 |
| Conread position: | 498-669 |
| Cow position: | chr10:15184603-15184770 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 129 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 51, 134 |
| Conread position: | 502-708 |
| Cow position: | chr10:43289935-43290146 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 8, 79 |
| Conread position: | 508-674 |
| Cow position: | chr10:26125089-26125254 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 44, 25 |
| Conread position: | 508-713 |
| Cow position: | chr10:26021847-26021646 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 44, 131 |
| Conread position: | 501-670 |
| Cow position: | chr11:40297852-40297689 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 74, 78 |
| Conread position: | 508-656 |
| Cow position: | chr11:58609865-58610014 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 41, 96 |
| Conread position: | 507-663 |
| Cow position: | chr12:31849904-31850055 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 42, 26 |
| Conread position: | 508-633 |
| Cow position: | chr12:4383074-4382947 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 101 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 498-663 |
| Cow position: | chr13:5927396-5927557 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 12, 51 |
| Conread position: | 500-667 |
| Cow position: | chr13:16127739-16127573 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 10, 106 |
| Conread position: | 558-796 |
| Cow position: | chr13:26601987-26602220 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 216, 77 |
| Conread position: | 498-648 |
| Cow position: | chr14:7717363-7717514 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 502-636 |
| Cow position: | chr14:39752386-39752521 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 47, 11 |
| Conread position: | 508-785 |
| Cow position: | chr14:43351047-43351330 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 195 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 41, 53 |
| Conread position: | 493-670 |
| Cow position: | chr15:20911877-20911701 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 55, 89 |
| Conread position: | 500-648 |
| Cow position: | chr15:41810309-41810156 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 508-629 |
| Cow position: | chr15:1856835-1856957 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 41, 11 |
| Conread position: | 502-648 |
| Cow position: | chr16:844260-844408 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 506-679 |
| Cow position: | chr16:15871990-15871815 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 508-785 |
| Cow position: | chr18:53740413-53740693 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 204 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 41, 5 |
| Conread position: | 499-686 |
| Cow position: | chr2:65751456-65751640 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 11, 143 |
| Conread position: | 501-796 |
| Cow position: | chr2:5987668-5987370 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 48, 163 |
| Conread position: | 505-667 |
| Cow position: | chr2:73234941-73235102 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 9, 137 |
| Conread position: | 509-637 |
| Cow position: | chr2:14979562-14979691 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 99 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 501-638 |
| Cow position: | chr20:10781199-10781061 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 9, 70 |
| Conread position: | 508-788 |
| Cow position: | chr20:12309114-12309396 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 190 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 42, 157 |
| Conread position: | 508-796 |
| Cow position: | chr20:31066677-31066391 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 44, 156 |
| Conread position: | 492-636 |
| Cow position: | chr21:6954793-6954937 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 57, 105 |
| Conread position: | 492-679 |
| Cow position: | chr21:41218963-41219148 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 28, 148 |
| Conread position: | 500-680 |
| Cow position: | chr22:40140850-40141034 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 10, 108 |
| Conread position: | 508-796 |
| Cow position: | chr23:37805397-37805691 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 40, 207 |
| Conread position: | 499-788 |
| Cow position: | chr25:30587169-30587467 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 51, 237 |
| Conread position: | 500-689 |
| Cow position: | chr28:4894245-4894054 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 500-635 |
| Cow position: | chr3:2482517-2482379 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 501-772 |
| Cow position: | chr3:10170201-10170462 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 48, 32 |
| Conread position: | 502-798 |
| Cow position: | chr3:37561018-37561312 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 209 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 8, 154 |
| Conread position: | 508-682 |
| Cow position: | chr3:22368273-22368447 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 128 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 41, 60 |
| Conread position: | 495-679 |
| Cow position: | chr4:51035219-51035032 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 54, 13 |
| Conread position: | 500-681 |
| Cow position: | chr4:54333101-54332914 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 525-721 |
| Cow position: | chr4:43716409-43716594 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 24, 8 |
| Conread position: | 531-796 |
| Cow position: | chr4:48012609-48012350 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 181 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 127, 108 |
| Conread position: | 497-687 |
| Cow position: | chr5:3983128-3982941 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 138 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 30, 144 |
| Conread position: | 500-670 |
| Cow position: | chr5:38903067-38902897 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 10, 101 |
| Conread position: | 499-669 |
| Cow position: | chr6:68250867-68250696 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 50, 143 |
| Conread position: | 508-788 |
| Cow position: | chr6:12307592-12307878 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 25, 176 |
| Conread position: | 508-647 |
| Cow position: | chr7:52826500-52826641 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 107 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 508-681 |
| Cow position: | chr8:40131019-40131191 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 44, 24 |
| Conread position: | 508-683 |
| Cow position: | chr8:51515096-51514924 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 129 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 39, 97 |